Lotus
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0218.18
         (330 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

SFR4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4            63  1e-09
SFRC_RAT (Q9JKL7) Splicing factor, arginine/serine-rich 12 (Seri...    60  1e-08
SFRC_HUMAN (Q8WXA9) Splicing factor, arginine/serine-rich 12 (Se...    60  1e-08
SFRB_HUMAN (Q05519) Splicing factor arginine/serine-rich 11 (Arg...    59  2e-08
SFRC_MOUSE (Q8BZX4) Splicing factor, arginine/serine-rich 12 (Se...    57  6e-08
SFRF_HUMAN (O95104) Splicing factor, arginine/serine-rich 15 (CT...    56  1e-07
CYL2_BOVIN (Q28092) Cylicin II (Multiple-band polypeptide II)          56  1e-07
SFR4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pre...    55  2e-07
SSRP_CAEEL (P41848) Probable structure-specific recognition prot...    55  3e-07
RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U...    55  3e-07
CBX8_HUMAN (Q9HC52) Chromobox protein homolog 8 (Polycomb 3 homo...    54  4e-07
HIR3_HUMAN (Q9BW71) HIRA-interacting protein 3                         54  7e-07
SFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attac...    53  9e-07
Y553_HUMAN (Q9UKJ3) Hypothetical protein KIAA0553                      53  1e-06
RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U...    51  3e-06
SFRG_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (Su...    51  5e-06
PPIG_RAT (O55035) Peptidyl-prolyl cis-trans isomerase G (EC 5.2....    51  5e-06
CYP1_BRUMA (Q27450) Peptidylprolyl isomerase 1 (EC 5.2.1.8) (Pep...    50  6e-06
PR16_HUMAN (Q92620) Pre-mRNA splicing factor ATP-dependent RNA h...    50  8e-06
YNE1_CAEEL (P30640) Hypothetical protein R08D7.1 in chromosome III     50  1e-05

>SFR4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4
          Length = 489

 Score = 62.8 bits (151), Expect = 1e-09
 Identities = 65/278 (23%), Positives = 100/278 (35%), Gaps = 32/278 (11%)

Query: 2   SHRDSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGG 61
           SH  S S+ RHS+  R        R G       + R R R     R + R R  +    
Sbjct: 190 SHSRSRSRSRHSRKSRS-------RSGSSKSSHSKSRSRSRSGSHSRSKSRSRSQSRSRS 242

Query: 62  GAGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPP---KHSAQPPRSRSYYQHA 118
                ++P+ +D ++      S+  S      KS DH E       SA   +S S  +H 
Sbjct: 243 KKEKSRSPS-KDNKS-----RSRSRSPDKSRSKSKDHAEDKLQNNDSAGKAKSHSPSRHD 296

Query: 119 ERGNTEQVGRSAGRREAGGKAFAQSKENSERVE------TSQSREQRDEKSQAKLDDNLH 172
            +  +    R A        + A+S+E S   E       S+SR +   +S+ K      
Sbjct: 297 SKSRSRSQERRAEEERRRSVSRARSQEKSRSQEKSLLKSRSRSRSRSRSRSKDKRKGRKR 356

Query: 173 RRDGSPERKDDPPSNTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDH--PPERNERK 230
            RD S  R       +RK  + R+ K+   S  +         K   TDH   P R+  K
Sbjct: 357 SRDESRSRSRSKSERSRKHSSKRDSKVSSSSSSSK--------KKKDTDHSRSPSRSVSK 408

Query: 231 EERSGNPRHLERHEKQIAGDRAPNRSEGRRDGFSSRAR 268
           E         +R  +      APN     R   +S+++
Sbjct: 409 EREHAKAESGQRGSRAEGESEAPNPEPRARSRSTSKSK 446



 Score = 61.6 bits (148), Expect = 3e-09
 Identities = 53/262 (20%), Positives = 92/262 (34%), Gaps = 7/262 (2%)

Query: 2   SHRDSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGG 61
           SH  S S+ R     R    K  R   K ++ R R R  ++ R   +    D++  N   
Sbjct: 226 SHSRSKSRSRSQSRSRSKKEKS-RSPSKDNKSRSRSRSPDKSRSKSKDHAEDKLQNNDSA 284

Query: 62  GAGGDQNPTDRDQRNLPPPPHSKQESV---GAGDKKSNDHQEPPKHSAQPPRSRSYYQHA 118
           G     +P+  D ++       + E          +S +     + S    RSRS  +  
Sbjct: 285 GKAKSHSPSRHDSKSRSRSQERRAEEERRRSVSRARSQEKSRSQEKSLLKSRSRSRSRSR 344

Query: 119 ERGNTEQVGRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRRDGSP 178
            R   ++ GR   R E+  ++ ++S+ + +      S+      S  K  D  H R  SP
Sbjct: 345 SRSKDKRKGRKRSRDESRSRSRSKSERSRKHSSKRDSKVSSSSSSSKKKKDTDHSR--SP 402

Query: 179 ERK-DDPPSNTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDHPPERNERKEERSGNP 237
            R       + +     R  + +G+S   NP         S +        R   +S + 
Sbjct: 403 SRSVSKEREHAKAESGQRGSRAEGESEAPNPEPRARSRSTSKSKPNVPAESRSRSKSASK 462

Query: 238 RHLERHEKQIAGDRAPNRSEGR 259
                     +  R+P+RS  R
Sbjct: 463 TRSRSKSPSRSASRSPSRSRSR 484



 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 52/234 (22%), Positives = 89/234 (37%), Gaps = 22/234 (9%)

Query: 91  GDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGRREAGGKAFAQSKENSERV 150
           G ++   +     HS    RSR   +   R  + +   S  R  +   + ++SK  S   
Sbjct: 178 GSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSHSRSKSRSRSQ 237

Query: 151 ETSQSREQRDEKSQAKLDDNLHR-RDGSPERKDDPPSNTRKRPAFREKKIQGDSGDANPA 209
             S+S++   EKS++   DN  R R  SP++     S ++ +    +K    DS     +
Sbjct: 238 SRSRSKK---EKSRSPSKDNKSRSRSRSPDK-----SRSKSKDHAEDKLQNNDSAGKAKS 289

Query: 210 VSTERVKASHTDHPPERNERKEERSGNPRHLER-----HEKQIAGDRAPNRSEGRRDGFS 264
            S  R  +       ER   +E R    R   +      EK +   R+ +RS  R     
Sbjct: 290 HSPSRHDSKSRSRSQERRAEEERRRSVSRARSQEKSRSQEKSLLKSRSRSRSRSR----- 344

Query: 265 SRARYGGSGGNNNDRGRDKFNARQGYHPIKTRTEKWKHDLFQEADNDPVPKNED 318
           SR++    G     R RD+  +R      ++R    K D    + +    K +D
Sbjct: 345 SRSKDKRKG---RKRSRDESRSRSRSKSERSRKHSSKRDSKVSSSSSSSKKKKD 395



 Score = 30.4 bits (67), Expect = 6.4
 Identities = 28/118 (23%), Positives = 40/118 (33%), Gaps = 18/118 (15%)

Query: 8   SKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGAGGDQ 67
           S  R SK     S  + ++D    R   R   +ERE        R       G  A G+ 
Sbjct: 376 SSKRDSKVSSSSSSSKKKKDTDHSRSPSRSVSKEREHAKAESGQR-------GSRAEGES 428

Query: 68  ---NP--------TDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSY 114
              NP        T + + N+P    S+ +S      +S         S    RSRS+
Sbjct: 429 EAPNPEPRARSRSTSKSKPNVPAESRSRSKSASKTRSRSKSPSRSASRSPSRSRSRSH 486


>SFRC_RAT (Q9JKL7) Splicing factor, arginine/serine-rich 12
           (Serine-arginine-rich splicing regulatory protein 86)
           (SRrp86) (SR-related protein of 86 kDa)
          Length = 494

 Score = 59.7 bits (143), Expect = 1e-08
 Identities = 50/239 (20%), Positives = 93/239 (37%), Gaps = 17/239 (7%)

Query: 4   RDSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGA 63
           R S S+ R     ++   K   R  +++RE++++R++ERE+  ERG+++D+         
Sbjct: 252 RKSRSRSRSRDKRKDTREKVKERVKEREREKEKEREKEREKDKERGKNKDKDREKEKDHE 311

Query: 64  GGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNT 123
                  +++Q         + +      KK    + PP+      RSRS    A R   
Sbjct: 312 KERDKEKEKEQDKDKEREKDRSKEADEKRKKEKKSRTPPRSYNSSRRSRS----ASRERR 367

Query: 124 EQVGRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHR---------- 173
            +  RS+ R     K   +    S        +E++ EK +  + D   R          
Sbjct: 368 RRRSRSSSRSPRTSKTIKRKSSRSPSPRGRNKKEKKREKERDHISDRRERERSTSTKKSS 427

Query: 174 --RDGSPE-RKDDPPSNTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDHPPERNER 229
             RDG  +  K + P   ++     +  +  D+ + + A + E  KA H  +     ER
Sbjct: 428 SDRDGKEKVEKTNTPVKEKEHSKEADSTVSTDADEKDTARTEEESKAQHNGNCQPHEER 486



 Score = 52.4 bits (124), Expect = 2e-06
 Identities = 58/268 (21%), Positives = 102/268 (37%), Gaps = 39/268 (14%)

Query: 2   SHRDSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGG 61
           SH  S S+       R    +   R    +R R R +DR R +   + R + R       
Sbjct: 197 SHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRARSKSPHKKRSKSR------- 249

Query: 62  GAGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERG 121
                                 K  S      K  D +E  K   +  R R   +  E+ 
Sbjct: 250 -------------------ERRKSRSRSRSRDKRKDTREKVKERVK-EREREKEKEREKE 289

Query: 122 NTEQVGRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRRDGSPERK 181
             +   R   + +   K     KE  +  E  Q +++  EK ++K  D   +++   ++ 
Sbjct: 290 REKDKERGKNKDKDREKEKDHEKERDKEKEKEQDKDKEREKDRSKEADEKRKKE---KKS 346

Query: 182 DDPP----SNTRKRPAFRE-KKIQGDSGDANPAVS-TERVKASHTDHPPERNERKEERSG 235
             PP    S+ R R A RE ++ +  S   +P  S T + K+S +  P  RN+++++R  
Sbjct: 347 RTPPRSYNSSRRSRSASRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRGRNKKEKKREK 406

Query: 236 NPRHL-ERHEKQIAGDRAPNRSEGRRDG 262
              H+ +R E++     +  +S   RDG
Sbjct: 407 ERDHISDRRERE--RSTSTKKSSSDRDG 432



 Score = 47.0 bits (110), Expect = 7e-05
 Identities = 69/331 (20%), Positives = 116/331 (34%), Gaps = 26/331 (7%)

Query: 5   DSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERER------GSERGRDRDRVTTN 58
           D   K+ HS       P+   +   ++ E    R RE +         E G+  +R    
Sbjct: 135 DRPLKINHSNNAIVKPPEMTPQAAAKELEEVMKRVREAQSFISAAIEPESGKSNER---- 190

Query: 59  GGGGAGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHA 118
                GG      R +       HS+++       K          S Q  R+RS   H 
Sbjct: 191 ----KGGRSRSHTRSKSRSSSKSHSRRKR---SQSKHRSRSHNRSRSRQKDRARSKSPHK 243

Query: 119 ERGNTEQVGRSAGRREAGGKAFAQSKENSERV-ETSQSREQRDEKSQAKLDDNLHRRDGS 177
           +R  + +  +S  R  +  K     ++  ERV E  + +E+  EK + K  +    +D  
Sbjct: 244 KRSKSRERRKSRSRSRSRDKRKDTREKVKERVKEREREKEKEREKEREKDKERGKNKDKD 303

Query: 178 PERKDDPPSNTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDHPPERNERKEERSGNP 237
            E++ D      K     + K +    D +     +R K   +  PP R+     RS + 
Sbjct: 304 REKEKDHEKERDKEKEKEQDKDKEREKDRSKEADEKRKKEKKSRTPP-RSYNSSRRSRSA 362

Query: 238 RHLERHEKQIAGDRAPNRSE--GRRDGFSSRARYGGSGGNNNDRGRDKFNARQGYHPIKT 295
               R  +  +  R+P  S+   R+   S   R         ++ RD  + R+      T
Sbjct: 363 SRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRGRNKKEKKREKERDHISDRR-ERERST 421

Query: 296 RTEKWKHDL----FQEADNDPVPKNEDDQIA 322
            T+K   D       E  N PV + E  + A
Sbjct: 422 STKKSSSDRDGKEKVEKTNTPVKEKEHSKEA 452


>SFRC_HUMAN (Q8WXA9) Splicing factor, arginine/serine-rich 12
           (Serine-arginine-rich splicing regulatory protein 86)
           (SRrp86) (Splicing regulatory protein 508) (SRrp508)
          Length = 508

 Score = 59.7 bits (143), Expect = 1e-08
 Identities = 53/241 (21%), Positives = 94/241 (38%), Gaps = 10/241 (4%)

Query: 6   SDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGAGG 65
           S S  R  + D     K   R  ++DRE++R+R++ERE+  ERG+++DR           
Sbjct: 253 SRSHSRDKRKDTREKIKEKERVKEKDREKEREREKEREKEKERGKNKDRDKEREKDREKD 312

Query: 66  DQNPTDRDQRNLPPPPHSKQ---------ESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQ 116
            +   +R++         K+         E      K+ ++ ++  K S  PPRS +  +
Sbjct: 313 KEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRSKEIDEKRKKDKKSRTPPRSYNASR 372

Query: 117 HAERGNTEQVGRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRRDG 176
            +   + E+  R +       +     K  S R  + +SR ++D+K + + D    RR+ 
Sbjct: 373 RSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERDHISERRER 432

Query: 177 SPERKDDPPSNTRKRPAFREKKIQG-DSGDANPAVSTERVKASHTDHPPERNERKEERSG 235
                    SN R      EK        + N    +   K       P   E K + +G
Sbjct: 433 ERSTSMRKSSNDRDGKEKLEKNSTSLKEKEHNKEPDSSVSKEVDDKDAPRTEENKIQHNG 492

Query: 236 N 236
           N
Sbjct: 493 N 493



 Score = 59.7 bits (143), Expect = 1e-08
 Identities = 69/328 (21%), Positives = 129/328 (39%), Gaps = 41/328 (12%)

Query: 2   SHRDSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGG 61
           SH  S S+       R    +   R    +R R R +DR R +   + R + R       
Sbjct: 194 SHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKKRSKSRERRK--- 250

Query: 62  GAGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERG 121
                     RD+R        ++E V   D++    +E  +   +  R ++  +  ER 
Sbjct: 251 ---SRSRSHSRDKRKDTREKIKEKERVKEKDREKEREREKEREK-EKERGKNKDRDKERE 306

Query: 122 NTEQVGRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRRDGSPERK 181
              +  +   R     K     K+  +  E  Q +E+  EK ++K  D   ++D   ++ 
Sbjct: 307 KDREKDKEKDREREREK--EHEKDRDKEKEKEQDKEKEREKDRSKEIDEKRKKD---KKS 361

Query: 182 DDPP----SNTRKRPAFRE-KKIQGDSGDANPAVS-TERVKASHTDHPPERNERKEERSG 235
             PP    ++ R R + RE ++ +  S   +P  S T + K+S +  P  RN++ ++R  
Sbjct: 362 RTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREK 421

Query: 236 NPRHL-ERHEKQIAGDRAPNRSEGRRDGFSSRARYGGSGGNNNDR-GRDKFNARQGYHPI 293
              H+ ER E++        RS   R              ++NDR G++K          
Sbjct: 422 ERDHISERRERE--------RSTSMRK-------------SSNDRDGKEKLEKNSTSLKE 460

Query: 294 KTRTEKWKHDLFQEADNDPVPKNEDDQI 321
           K   ++    + +E D+   P+ E+++I
Sbjct: 461 KEHNKEPDSSVSKEVDDKDAPRTEENKI 488



 Score = 35.4 bits (80), Expect = 0.20
 Identities = 39/186 (20%), Positives = 66/186 (34%), Gaps = 22/186 (11%)

Query: 127 GRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRRDGSPERKDDPPS 186
           G+S  R+  GG++ + ++  S     S SR +R +        N  R      R+   P 
Sbjct: 182 GKSNERK--GGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPH 239

Query: 187 NTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDHPPERNERKEERSGNPRHLERHEKQ 246
             +KR   RE++       +       R K    +   E++  KE      R  ER +++
Sbjct: 240 --KKRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKEKDREKERE----REKEREKEK 293

Query: 247 IAGDRAPNRSEGRRDGFSSRARYGGSGGNNNDRGRDKFNARQGYHPIKTRTEKWK-HDLF 305
             G       E  +D                D+ +D+   R+  H      EK K  D  
Sbjct: 294 ERGKNKDRDKEREKD-------------REKDKEKDREREREKEHEKDRDKEKEKEQDKE 340

Query: 306 QEADND 311
           +E + D
Sbjct: 341 KEREKD 346


>SFRB_HUMAN (Q05519) Splicing factor arginine/serine-rich 11
           (Arginine-rich 54 kDa nuclear protein) (p54)
          Length = 484

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 60/244 (24%), Positives = 94/244 (37%), Gaps = 23/244 (9%)

Query: 7   DSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGAGGD 66
           + K RHS   R  S  R RR     R R R R R R R   + R R R            
Sbjct: 243 EEKRRHS---RSRSRSRRRRTPSSSRHR-RSRSRSRRRSHSKSRSRRR-----------S 287

Query: 67  QNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQV 126
           ++P  R   +      S+  S    DKK  D ++  K S  PP+S   Y  A R  +   
Sbjct: 288 KSPRRRRSHSRERGRRSRSTSK-TRDKKKEDKEK--KRSKTPPKS---YSTARRSRSASR 341

Query: 127 GRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRRDGSPERKDDPPS 186
            R   R  +G ++    K  S + + S+S   R  K + K D +  R     ER      
Sbjct: 342 ERRRRRSRSGTRS--PKKPRSPKRKLSRSPSPRRHKKEKKKDKDKERSRDERERSTSKKK 399

Query: 187 NTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDHPPERNERKEERSGNPRHLERHEKQ 246
            ++ +   RE+K + D          +  +  +     ++ E+K   +G+P+  E   ++
Sbjct: 400 KSKDKEKDRERKSESDKDVKQVTRDYDEEEQGYDSEKEKKEEKKPIETGSPKTKECSVEK 459

Query: 247 IAGD 250
             GD
Sbjct: 460 GTGD 463



 Score = 50.4 bits (119), Expect = 6e-06
 Identities = 49/241 (20%), Positives = 89/241 (36%), Gaps = 28/241 (11%)

Query: 4   RDSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSE----RGRDRDRVTTNG 59
           R S S+ R S+  R PS  R+RR   + R R   + R R R       R   R+R   + 
Sbjct: 247 RHSRSRSR-SRRRRTPSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSRERGRRSR 305

Query: 60  GGGAGGDQNPTDRDQRNLPPPPHS--------------KQESVGAGDKKSNDHQEPPKHS 105
                 D+   D++++    PP S              ++    +G +     + P +  
Sbjct: 306 STSKTRDKKKEDKEKKRSKTPPKSYSTARRSRSASRERRRRRSRSGTRSPKKPRSPKRKL 365

Query: 106 AQPPRSRSYYQHAERGNTEQVGRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQA 165
           ++ P  R + +  ++   ++  R    R    K  ++ KE        +S   +D K   
Sbjct: 366 SRSPSPRRHKKEKKKDKDKERSRDERERSTSKKKKSKDKEKDRE---RKSESDKDVKQVT 422

Query: 166 K-LDDNLHRRDGSPERKDDPPSNTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDHPP 224
           +  D+     D   E+K++        P  +E  ++  +GD     S    K +  DH  
Sbjct: 423 RDYDEEEQGYDSEKEKKEEKKPIETGSPKTKECSVEKGTGD-----SLRESKVNGDDHHE 477

Query: 225 E 225
           E
Sbjct: 478 E 478



 Score = 40.8 bits (94), Expect = 0.005
 Identities = 55/226 (24%), Positives = 87/226 (38%), Gaps = 38/226 (16%)

Query: 92  DKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGRREAGGKAFAQSKENSERVE 151
           DKK    +E  +HS    RSRS  +     +  +  RS  RR +  K+ ++ +  S R  
Sbjct: 240 DKK----EEKRRHSRS--RSRSRRRRTPSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRR 293

Query: 152 TSQSREQ----------RD------EKSQAKLDDNLHRRDGSPERKDDPPSNTRKRPAFR 195
            S SRE+          RD      EK ++K     +    S  R+    S  R+R   R
Sbjct: 294 RSHSRERGRRSRSTSKTRDKKKEDKEKKRSKTPPKSY----STARRSRSASRERRRRRSR 349

Query: 196 EKKIQGDSGDANPAVSTERVKASHTDHPPERNERKEERSGNPRHLERHEKQIAGDRAPNR 255
                  SG  +P       K   +  P  R  +KE++    +   R E+    +R+ ++
Sbjct: 350 -------SGTRSPK-KPRSPKRKLSRSPSPRRHKKEKKKDKDKERSRDER----ERSTSK 397

Query: 256 SEGRRDGFSSRARYGGSGGNNNDRGRDKFNARQGYHPIKTRTEKWK 301
            +  +D    R R   S  +     RD     QGY   K + E+ K
Sbjct: 398 KKKSKDKEKDRERKSESDKDVKQVTRDYDEEEQGYDSEKEKKEEKK 443



 Score = 31.6 bits (70), Expect = 2.9
 Identities = 44/176 (25%), Positives = 65/176 (36%), Gaps = 16/176 (9%)

Query: 129 SAGRREAGGKAFAQSKENSE---RVETSQSREQRDEKSQAKLDDNLHRRDGSPERKDDPP 185
           +AG      K+   SKE  E   RV  +QS      +   K +   H R  S  R+   P
Sbjct: 202 AAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEKRRHSRSRSRSRRRRTP 261

Query: 186 SNTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDHPPERNERKEERSGNPRHLERHEK 245
           S++R R +    + +  S     + S  R K+     P  R     ER    R   +   
Sbjct: 262 SSSRHRRSRSRSRRRSHS----KSRSRRRSKS-----PRRRRSHSRERGRRSRSTSKTRD 312

Query: 246 QIAGDRAPNRSEGRRDGFSSRARYGGSGGNNNDRGRDKFNARQGYHPIKTRTEKWK 301
           +   D+   RS+     +S+ AR   S      R R +   R    P K R+ K K
Sbjct: 313 KKKEDKEKKRSKTPPKSYST-ARRSRSASRERRRRRSRSGTRS---PKKPRSPKRK 364


>SFRC_MOUSE (Q8BZX4) Splicing factor, arginine/serine-rich 12
           (Serine-arginine-rich splicing regulatory protein 86)
           (SRrp86)
          Length = 494

 Score = 57.0 bits (136), Expect = 6e-08
 Identities = 53/254 (20%), Positives = 107/254 (41%), Gaps = 25/254 (9%)

Query: 4   RDSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGA 63
           R S S+ R     ++   K   R  +++RE++R+R+++RE+  ERG+++D+         
Sbjct: 252 RKSRSRSRSRDKRKDTREKVKERVKEKEREKEREREKDREKDKERGKNKDKDREK----- 306

Query: 64  GGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNT 123
               +  +RD+         K+       K++++ ++  K S  PPRS          N 
Sbjct: 307 -EKDHEKERDKEKEKEQDKDKEREKDR-SKETDEKRKKEKKSRTPPRSY---------NA 355

Query: 124 EQVGRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRRDGSPERKDD 183
            +  RS  R     +   +S+ +S    TS++ +++  +S +    N  +++   E++ D
Sbjct: 356 SRRSRSTSRE----RRRRRSRSSSRSPRTSKTVKRKSSRSPSPRGRN--KKEKKREKERD 409

Query: 184 PPSNTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDHPPERN---ERKEERSGNPRHL 240
             S+ R+R      K      D    V          +H  E +    +  +  G+PR  
Sbjct: 410 HISDRRERERSTSTKKSSGDRDGKEKVEKSTTPVKEKEHSKESDATVSKAADEKGSPRTE 469

Query: 241 ERHEKQIAGDRAPN 254
           +  + Q  G+  PN
Sbjct: 470 DEGKVQHNGNCQPN 483



 Score = 52.4 bits (124), Expect = 2e-06
 Identities = 56/268 (20%), Positives = 102/268 (37%), Gaps = 39/268 (14%)

Query: 2   SHRDSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGG 61
           SH  S S+       R    +   R    +R R R +DR R +   + R + R       
Sbjct: 197 SHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKKRSKSR------- 249

Query: 62  GAGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERG 121
                                 K  S      K  D +E  K   +  + R   +  E+ 
Sbjct: 250 -------------------ERRKSRSRSRSRDKRKDTREKVKERVK-EKEREKEREREKD 289

Query: 122 NTEQVGRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRRDGSPERK 181
             +   R   + +   K     KE  +  E  Q +++  EK ++K  D   +++   ++ 
Sbjct: 290 REKDKERGKNKDKDREKEKDHEKERDKEKEKEQDKDKEREKDRSKETDEKRKKE---KKS 346

Query: 182 DDPP----SNTRKRPAFRE-KKIQGDSGDANPAVS-TERVKASHTDHPPERNERKEERSG 235
             PP    ++ R R   RE ++ +  S   +P  S T + K+S +  P  RN+++++R  
Sbjct: 347 RTPPRSYNASRRSRSTSRERRRRRSRSSSRSPRTSKTVKRKSSRSPSPRGRNKKEKKREK 406

Query: 236 NPRHL-ERHEKQIAGDRAPNRSEGRRDG 262
              H+ +R E++     +  +S G RDG
Sbjct: 407 ERDHISDRRERE--RSTSTKKSSGDRDG 432



 Score = 48.1 bits (113), Expect = 3e-05
 Identities = 47/233 (20%), Positives = 95/233 (40%), Gaps = 14/233 (6%)

Query: 94  KSNDHQEPPKHSAQPPRSRSYYQ-HAERGNTEQVGRSAGRREAGGKAFAQSKENSERVET 152
           KSN+ +     S    +SRS  + H+ R  ++   RS     +  +   + +  S   + 
Sbjct: 186 KSNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKKR 245

Query: 153 SQSREQRDEKSQAKLDDNLHRRDGSPERKDDPPSNTRKRPAFREKKIQGDSGDANPAVST 212
           S+SRE+R  +S+++  D   R+D   + K+      R++   REK  + D        + 
Sbjct: 246 SKSRERRKSRSRSRSRDK--RKDTREKVKERVKEKEREKEREREKDREKDKERGK---NK 300

Query: 213 ERVKASHTDHPPERNERKEERSGNPRHLERHEKQIAGDRAPNRSEGRRDGFSSRARYGGS 272
           ++ +    DH  ER++ KE+     +  E+       DR+    E R+    SR      
Sbjct: 301 DKDREKEKDHEKERDKEKEKEQDKDKEREK-------DRSKETDEKRKKEKKSRTPPRSY 353

Query: 273 GGNNNDRGRDKFNARQGYHPIKTRTEKWKHDLFQEADNDPVPKNEDDQIAKLE 325
             +   R   +   R+      +R+ +    + +++   P P+  + +  K E
Sbjct: 354 NASRRSRSTSRERRRRRSRS-SSRSPRTSKTVKRKSSRSPSPRGRNKKEKKRE 405



 Score = 47.0 bits (110), Expect = 7e-05
 Identities = 71/348 (20%), Positives = 120/348 (34%), Gaps = 44/348 (12%)

Query: 5   DSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERER------GSERGRDRDRVTTN 58
           D   K+ HS       P+   +   ++ E    R RE +         E G+  +R    
Sbjct: 135 DRPLKINHSNNAIVKPPEMTPQAAAKELEEVMKRVREAQSFISAAIEPESGKSNER---- 190

Query: 59  GGGGAGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHA 118
                GG      R +       HS+++       K          S Q  R RS   H 
Sbjct: 191 ----KGGRSRSHTRSKSRSSSKSHSRRKR---SQSKHRSRSHNRSRSRQKDRRRSKSPHK 243

Query: 119 ERGNTEQVGRSAGRREAGGKAFAQSKENSERVETSQSREQRD---------------EKS 163
           +R  + +  +S  R  +  K     ++  ERV+  +  ++R+               +K 
Sbjct: 244 KRSKSRERRKSRSRSRSRDKRKDTREKVKERVKEKEREKEREREKDREKDKERGKNKDKD 303

Query: 164 QAKLDDNLHRRDGSPERKDDPPSNTRK-RPAFREKKIQGDSGDANPAVSTERVKASHTDH 222
           + K  D+   RD   E++ D      K R    ++K + +     P  S    + S +  
Sbjct: 304 REKEKDHEKERDKEKEKEQDKDKEREKDRSKETDEKRKKEKKSRTPPRSYNASRRSRSTS 363

Query: 223 PPERNERKEERSGNPR---HLERHEKQIAGDRAPNRSEGR----RDGFSSRARYGGSGGN 275
              R  R    S +PR    ++R   +    R  N+ E +    RD  S R     S   
Sbjct: 364 RERRRRRSRSSSRSPRTSKTVKRKSSRSPSPRGRNKKEKKREKERDHISDRRERERSTST 423

Query: 276 NNDRG-RD-KFNARQGYHPIKTRTEKWKHD--LFQEADNDPVPKNEDD 319
               G RD K    +   P+K +    + D  + + AD    P+ ED+
Sbjct: 424 KKSSGDRDGKEKVEKSTTPVKEKEHSKESDATVSKAADEKGSPRTEDE 471


>SFRF_HUMAN (O95104) Splicing factor, arginine/serine-rich 15
            (CTD-binding SR-like protein RA4) (Fragment)
          Length = 1157

 Score = 56.2 bits (134), Expect = 1e-07
 Identities = 46/179 (25%), Positives = 66/179 (36%), Gaps = 21/179 (11%)

Query: 60   GGGAGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAE 119
            GG   G   P DRD R  PP    +Q    A  +     Q+ P  S QPP ++   Q   
Sbjct: 935  GGPGPGPGGPEDRDGRQQPPQQPQQQPQPQAPQQPQQQQQQQPPPSQQPPPTQQQPQQFR 994

Query: 120  RGNTEQVGRSAGRREAGGKAFA--------------QSKENSERVETSQSREQRDEKSQA 165
              N +Q      +   G ++F                 ++NS R      R   D     
Sbjct: 995  NDNRQQFNSGRDQERFGRRSFGNRVENDRERYGNRNDDRDNSNRDRREWGRRSPDRDRHR 1054

Query: 166  KLDDNLHRRDGSPERKDDPPSNTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDHPP 224
             L++   R  G  +R+ D    +R R + REK  +   G   P V T+R   + T  PP
Sbjct: 1055 DLEERNRRSSGHRDRERD----SRDRESRREK--EEARGKEKPEV-TDRAGGNKTVEPP 1106



 Score = 35.8 bits (81), Expect = 0.15
 Identities = 25/120 (20%), Positives = 52/120 (42%), Gaps = 9/120 (7%)

Query: 18   EPSPKRYRRDGKQDRERDRDRDR--ERERGSERGRDRDRVTTNGGGGAGGDQNPTDRDQR 75
            +  P+++R D +Q     RD++R   R  G+    DR+R      G    D++ ++RD+R
Sbjct: 987  QQQPQQFRNDNRQQFNSGRDQERFGRRSFGNRVENDRERY-----GNRNDDRDNSNRDRR 1041

Query: 76   --NLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGRR 133
                  P   +   +   +++S+ H++  + S      R   +   +   E   R+ G +
Sbjct: 1042 EWGRRSPDRDRHRDLEERNRRSSGHRDRERDSRDRESRREKEEARGKEKPEVTDRAGGNK 1101



 Score = 30.4 bits (67), Expect = 6.4
 Identities = 27/104 (25%), Positives = 40/104 (37%), Gaps = 3/104 (2%)

Query: 2    SHRDSDSKLRHSKFDR-EPSPKRY--RRDGKQDRERDRDRDRERERGSERGRDRDRVTTN 58
            S RD +   R S  +R E   +RY  R D + +  RDR     R    +R RD +     
Sbjct: 1003 SGRDQERFGRRSFGNRVENDRERYGNRNDDRDNSNRDRREWGRRSPDRDRHRDLEERNRR 1062

Query: 59   GGGGAGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPP 102
              G    +++  DR+ R        K++         N   EPP
Sbjct: 1063 SSGHRDRERDSRDRESRREKEEARGKEKPEVTDRAGGNKTVEPP 1106


>CYL2_BOVIN (Q28092) Cylicin II (Multiple-band polypeptide II)
          Length = 488

 Score = 56.2 bits (134), Expect = 1e-07
 Identities = 69/343 (20%), Positives = 134/343 (38%), Gaps = 46/343 (13%)

Query: 8   SKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRER---ERGSER---GRDRDRVTTNGGG 61
           SK +  K D +   K+ R+D K+ +E   + + E+   E+G+++   G  + + T +  G
Sbjct: 148 SKAKEEKPDEKKDLKKERKDSKKGKESATESEDEKAGAEKGAKKDRKGSKKGKETPSDSG 207

Query: 62  GAGGDQNPTDRDQRNLPPPPHSKQESVG-AGDKKSNDHQEPPKHSAQPPRSRSYYQHAER 120
              GD     +  +       S  ES G  GD K +D  +  K  ++  +  +     E+
Sbjct: 208 SEKGDAKKDSKKSKKDSKGKESATESEGEKGDAKKDD--KKGKKGSKKGKESATESEGEK 265

Query: 121 GNTEQVGRSAGRREAGGKAFAQSKENSE--------------RVETSQSREQRDEKSQAK 166
           G+ ++  +   +    GK  A   E  +              +     + E   EK  AK
Sbjct: 266 GDAKKDDKKGKKGSKKGKESATESEGEKGDAKKDDKKGKKGSKKGKESATESEGEKGDAK 325

Query: 167 LDDNLHRRDGSPERKDDPPSNTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDHPPER 226
            DD   ++     ++    S   K  A ++ K +G  G      S  + +    D    +
Sbjct: 326 KDDKKGKKGSKKGKESATESEGEKGDAKKDDK-KGKKGSKKGKESDSKAEGDKGD---AK 381

Query: 227 NERKEERSGNPRHLERHEKQIAGDRAPNRSEG-RRDGFSSRA--RYGGSGGNNNDRGRDK 283
            + K+++ G+ +          G  +   SEG ++D    +A  +     G   D  +DK
Sbjct: 382 KDDKKDKKGSKK----------GKESATESEGEKKDSKKDKAGKKDPTKAGEKGDESKDK 431

Query: 284 FNARQGYHPIKTRTEKWKHDLFQEADNDPVPKNEDDQIAKLEA 326
            +A+      K  ++K K D  +  + +  PK+   + AK +A
Sbjct: 432 KDAK------KKDSKKEKKDEKKPGEAESEPKDSAKKDAKKDA 468



 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 49/261 (18%), Positives = 102/261 (38%), Gaps = 34/261 (13%)

Query: 5   DSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGAG 64
           DS S+   +K D + S K  +  GK+          + ++  ++G+   +        + 
Sbjct: 205 DSGSEKGDAKKDSKKSKKDSK--GKESATESEGEKGDAKKDDKKGKKGSKKGKESATESE 262

Query: 65  GDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTE 124
           G++    +D +         +ES    + +  D ++  K      + +   +  +   TE
Sbjct: 263 GEKGDAKKDDKKGKKGSKKGKESATESEGEKGDAKKDDK------KGKKGSKKGKESATE 316

Query: 125 QVGRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRRDGSPERKDDP 184
             G     ++   K    SK+  E      + E   EK  AK DD   ++ GS + K+  
Sbjct: 317 SEGEKGDAKKDDKKGKKGSKKGKE-----SATESEGEKGDAKKDDKKGKK-GSKKGKES- 369

Query: 185 PSNTRKRPAFREKKIQGDSGDA-----NPAVSTERVKASHTDHPPERNERKEERSGNPRH 239
                      + K +GD GDA          +++ K S T+   E+ + K++++G    
Sbjct: 370 -----------DSKAEGDKGDAKKDDKKDKKGSKKGKESATESEGEKKDSKKDKAGKKDP 418

Query: 240 LERHEKQIAGDRAPNRSEGRR 260
            +  EK   GD + ++ + ++
Sbjct: 419 TKAGEK---GDESKDKKDAKK 436



 Score = 36.6 bits (83), Expect = 0.089
 Identities = 40/213 (18%), Positives = 87/213 (40%), Gaps = 25/213 (11%)

Query: 4   RDSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRER----------ERGSERGRDRD 53
           ++S ++    K D +   K+ ++  K+ +E   + + E+          ++GS++G++  
Sbjct: 255 KESATESEGEKGDAKKDDKKGKKGSKKGKESATESEGEKGDAKKDDKKGKKGSKKGKES- 313

Query: 54  RVTTNGGGGAGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRS 113
              T   G  G  +    + ++       S  ES G       D ++  K S +   S S
Sbjct: 314 --ATESEGEKGDAKKDDKKGKKGSKKGKESATESEGEKGDAKKDDKKGKKGSKKGKESDS 371

Query: 114 YYQHAERGNTEQVGRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHR 173
             +    G+     +   + + G K   +S   SE  +    +++  +K   K  +   +
Sbjct: 372 KAE----GDKGDAKKDDKKDKKGSKKGKESATESEGEKKDSKKDKAGKKDPTKAGE---K 424

Query: 174 RDGSPERKDDPPSNTRKRPAFREKKIQGDSGDA 206
            D S ++KD      +K+ + +EKK +   G+A
Sbjct: 425 GDESKDKKD-----AKKKDSKKEKKDEKKPGEA 452



 Score = 31.6 bits (70), Expect = 2.9
 Identities = 28/152 (18%), Positives = 61/152 (39%), Gaps = 12/152 (7%)

Query: 142 QSKENSER----VETSQSREQRDEKSQAKLDDNLHRRDGSPERKDDPPSNTRKRPAFREK 197
           +SKE+ ++     E+  S+E+  + S+AK +    ++D   ERKD          +  ++
Sbjct: 123 KSKEDKDKSDSEAESIVSKEKPRKLSKAKEEKPDEKKDLKKERKDSKKGKESATES-EDE 181

Query: 198 KIQGDSGDANPAVSTERVKASHTDHPPERNERKEERSGNPRHLERHEKQIAGDRAPNRSE 257
           K   + G       +++ K + +D   E+ + K++        ++ +K   G  +   SE
Sbjct: 182 KAGAEKGAKKDRKGSKKGKETPSDSGSEKGDAKKDS-------KKSKKDSKGKESATESE 234

Query: 258 GRRDGFSSRARYGGSGGNNNDRGRDKFNARQG 289
           G +       + G  G         +    +G
Sbjct: 235 GEKGDAKKDDKKGKKGSKKGKESATESEGEKG 266


>SFR4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4
           (Pre-mRNA splicing factor SRP75) (SRP001LB)
          Length = 494

 Score = 55.5 bits (132), Expect = 2e-07
 Identities = 51/271 (18%), Positives = 100/271 (36%), Gaps = 14/271 (5%)

Query: 2   SHRDSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRD----RVTT 57
           S   S S+ R     R  S  R +++  +   +++ R R    G  R + +D    ++  
Sbjct: 220 SRSRSGSRSRSKSRSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQN 279

Query: 58  NGGGGAGGDQNPT-------DRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPR 110
           N   G    ++P+        R +         K+ SV  G  +    ++    S     
Sbjct: 280 NDNVGKPKSRSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGG 339

Query: 111 SRSYYQHAERGNTEQVGRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDN 170
           SRS  +   +   ++ GR   R E+  ++ ++SK    R   S+   +     + K +D 
Sbjct: 340 SRSRSRSRSKSKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDT 399

Query: 171 LHRRDGSPERKDDPPSNTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDHPPE--RNE 228
              +  SP R         K  +  +++ +G+S +A     T     S++   P      
Sbjct: 400 DRSQSRSPSRSVSKEREHAKSES-SQREGRGESENAGTNQETRSRSRSNSKSKPNLPSES 458

Query: 229 RKEERSGNPRHLERHEKQIAGDRAPNRSEGR 259
           R   +S +        +  +  R+P+RS  R
Sbjct: 459 RSRSKSASKTRSRSKSRSRSASRSPSRSRSR 489



 Score = 48.9 bits (115), Expect = 2e-05
 Identities = 56/239 (23%), Positives = 91/239 (37%), Gaps = 19/239 (7%)

Query: 82  HSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGRRE-----AG 136
           HS+  S     +KS       K S    RSRS      R  +    +S  R +     + 
Sbjct: 191 HSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRSKKEKSRSP 250

Query: 137 GKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHR-RDGSPER---KDDPPSNTRKRP 192
            K  ++S+ +S     S+S++Q +EK Q   +DN+ + +  SP R   K    S +++R 
Sbjct: 251 SKEKSRSRSHSAGKSRSKSKDQAEEKIQN--NDNVGKPKSRSPSRHKSKSKSRSRSQERR 308

Query: 193 AFREKKIQGDSG-----DANPAVSTERVKASHTDHPPERNERKEERSGNPRHLERHEKQI 247
              EK+     G         + S  R K         R++ K++R G  R  E    + 
Sbjct: 309 VEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKSKDKRKGRKRSREESRSR- 367

Query: 248 AGDRAPNRSEGRRDGFSSRARYGGSGGNNNDRGRDKFNARQGYHPIKTRTEKWKHDLFQ 306
              R+ ++SE  R   S R    GS         D+  +R     +    E  K +  Q
Sbjct: 368 --SRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSVSKEREHAKSESSQ 424



 Score = 46.6 bits (109), Expect = 9e-05
 Identities = 42/172 (24%), Positives = 65/172 (37%), Gaps = 11/172 (6%)

Query: 2   SHRDSDSKLRHSKFDREPSPKRY-----RRDGKQDRERDRDRDRER---ERGSERGRDRD 53
           S R S S+ R     R  S  R      R+  K+ RE  R R R R   ER  +RG  RD
Sbjct: 326 SLRQSRSRSRSKGGSRSRSRSRSKSKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRD 385

Query: 54  RVTTNGGGGAGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRS 113
              +  G      +  TDR Q   P    SK+      +    + +   +++     +RS
Sbjct: 386 ---SKAGSSKKKKKEDTDRSQSRSPSRSVSKEREHAKSESSQREGRGESENAGTNQETRS 442

Query: 114 YYQHAERGNTEQVGRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQA 165
             +   +        S  R ++  K  ++SK  S     S SR +    S++
Sbjct: 443 RSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRSRSRSHSRS 494



 Score = 42.7 bits (99), Expect = 0.001
 Identities = 52/234 (22%), Positives = 90/234 (38%), Gaps = 19/234 (8%)

Query: 91  GDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGRREAGGKAFAQSKENSERV 150
           G ++   +     HS    RSR    H+ +  +    RS   + +  K+ ++S+  S   
Sbjct: 178 GSRRRRSYSRSRSHSRSRSRSR----HSRKSRS----RSGSSKSSHSKSRSRSRSGSRSR 229

Query: 151 ETSQSREQRDEKSQAKLDDNLHRRDGSPERKDDPPSNTRKRPAFREKKIQGDSGDANP-- 208
             S+SR Q   +S+ K       ++ S  R      +  K     E+KIQ +     P  
Sbjct: 230 SKSRSRSQSRSRSK-KEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKS 288

Query: 209 -AVSTERVKASHTDHPPERNERKEERSGNPRHLERHEKQIAGDRAPNRSEGRRDGFSSRA 267
            + S  + K+       ER   +EE+ G+       EK +   R+ +RS+G   G  SR+
Sbjct: 289 RSPSRHKSKSKSRSRSQERRV-EEEKRGSVSRGRSQEKSLRQSRSRSRSKG---GSRSRS 344

Query: 268 RYGGSGGN---NNDRGRDKFNARQGYHPIKTRTEKWKHDLFQEADNDPVPKNED 318
           R      +      R R++  +R        R+ K       +A +    K ED
Sbjct: 345 RSRSKSKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKED 398


>SSRP_CAEEL (P41848) Probable structure-specific recognition protein
           1 (SSRP1) (Recombination signal sequence recognition
           protein)
          Length = 697

 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 53/254 (20%), Positives = 104/254 (40%), Gaps = 21/254 (8%)

Query: 5   DSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGAG 64
           DSD       +D +   K+ + D +       + D E + GSE+         + G G  
Sbjct: 461 DSDDDSTDEDYDLDKDIKKKKEDKESSEGTGSEPDDEYDSGSEQD--------SSGTGES 512

Query: 65  GDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTE 124
              +  D   +     P  K+E     +KK     +  K    P R+ S Y      +  
Sbjct: 513 EPDSEQDVPSKRRKGEPKEKREKKEKREKKEGKKGKKDKDPNAPKRATSAYMQWFLASRN 572

Query: 125 QVGRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRRDGSPERKDDP 184
           ++      +E G      +K+   + +T  S +++  + +A+ D + + ++    RK+ P
Sbjct: 573 EL------KEDGDSVADVAKKGGAKWKTMSSDDKKKWEEKAEEDKSRYEKEMKEYRKNGP 626

Query: 185 PSNTRKRPAFR-EKKIQGDSGDANPAVSTERVKASHTDHPPERNERKEERSGNPRHLERH 243
           PS++ K  + +  KK  G S  ++ A+S E +  S +D   +   +K+E+   P+  E  
Sbjct: 627 PSSSSKPSSSKTSKKSSGPS--SSKAISKEYI--SDSDDSDDEEPKKKEKKAAPK--EES 680

Query: 244 EKQIAGDRAPNRSE 257
           E+   G    + S+
Sbjct: 681 EESNNGSDGSDESD 694


>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1
           snRNP 70 kDa) (snRNP70) (U1-70K)
          Length = 427

 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 42/143 (29%), Positives = 66/143 (45%), Gaps = 15/143 (10%)

Query: 17  REPSPKRYRRDGKQDRERD--RDRDRERERGSERGRDRDRVTTNGGGGAGGDQNPTDRDQ 74
           RE    R R  G +DR+RD  RDRDR R+RG    RDRDR     G       +  DR +
Sbjct: 295 REDKHHRDRDQGGRDRDRDSRRDRDRTRDRGDRDRRDRDR-----GRDRTSRDHDRDRSR 349

Query: 75  RNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGRRE 134
           +        + E  G G  +  D     ++  +P  +R YY+  ++G+T++      + E
Sbjct: 350 KKERDYEGGEYEHEGGGRSRERD----AEYRGEPEETRGYYED-DQGDTDRYSHRYDKME 404

Query: 135 AGGKAFAQSKENSERVETSQSRE 157
                + +  + S+R   S+SRE
Sbjct: 405 EDDFRYEREYKRSKR---SESRE 424



 Score = 40.8 bits (94), Expect = 0.005
 Identities = 50/221 (22%), Positives = 86/221 (38%), Gaps = 18/221 (8%)

Query: 27  DGKQ---DRERDRDRDRERERGSERGRDRDRVTTNGGGGAGGDQNPTDRDQRNLPP--PP 81
           DG++   D ER R     R R    G    RV   GG    G+Q P  R  ++  P  P 
Sbjct: 205 DGRRVLVDVERGRTVPNWRPRRLGGGLGTSRV--GGGEEIVGEQQPQGRTSQSEEPSRPR 262

Query: 82  HSKQESVGAGDKKSND----HQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGRREAGG 137
             +++S   G ++       H++P + S   PR   +++  ++G  ++   S   R+   
Sbjct: 263 EEREKSREKGKERERSRELSHEQPRERSRDRPREDKHHRDRDQGGRDRDRDSRRDRDRTR 322

Query: 138 KAFAQSKENSERVETSQSREQRDEKSQAKLDD----NLHRRDGSPERKDDPPSNTRKRPA 193
               + + + +R     SR+   ++S+ K  D          G   R+ D  +  R  P 
Sbjct: 323 DRGDRDRRDRDRGRDRTSRDHDRDRSRKKERDYEGGEYEHEGGGRSRERD--AEYRGEPE 380

Query: 194 FREKKIQGDSGDANPAVSTERVKASHTDHPPERNERKEERS 234
                 + D GD +   S    K    D   ER  ++ +RS
Sbjct: 381 ETRGYYEDDQGDTD-RYSHRYDKMEEDDFRYEREYKRSKRS 420



 Score = 32.3 bits (72), Expect = 1.7
 Identities = 35/167 (20%), Positives = 63/167 (36%), Gaps = 11/167 (6%)

Query: 18  EPSPKRYRRDGKQDRERDRDRDRERERGSERGRDR----DRVTTNGGGGAGGDQNPTDRD 73
           E  P+      ++      +R++ RE+G ER R R    ++           D++  DRD
Sbjct: 245 EQQPQGRTSQSEEPSRPREEREKSREKGKERERSRELSHEQPRERSRDRPREDKHHRDRD 304

Query: 74  QRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQH-AERGNTEQVGRSAGR 132
           Q        S+++     D+   D ++  +      R R+   H  +R   ++     G 
Sbjct: 305 QGGRDRDRDSRRDRDRTRDRGDRDRRDRDR-----GRDRTSRDHDRDRSRKKERDYEGGE 359

Query: 133 REAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRRDGSPE 179
            E  G   ++ ++   R E  ++R    E  Q   D   HR D   E
Sbjct: 360 YEHEGGGRSRERDAEYRGEPEETRGYY-EDDQGDTDRYSHRYDKMEE 405


>CBX8_HUMAN (Q9HC52) Chromobox protein homolog 8 (Polycomb 3
           homolog) (Pc3) (HPC3) (Rectachrome 1)
          Length = 389

 Score = 54.3 bits (129), Expect = 4e-07
 Identities = 42/132 (31%), Positives = 62/132 (46%), Gaps = 10/132 (7%)

Query: 17  REPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTT------NGGGGAGGDQNPT 70
           R  +P+   RD  +DRERDR+R+RERER  ER R+R+R T+      +  G +   + P 
Sbjct: 143 RAEAPRDRDRDRDRDRERDRERERERERERERERERERGTSRVDDKPSSPGDSSKKRGPK 202

Query: 71  DRDQRNLPPPPHSKQESVGAGD-KKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVG-- 127
            R +   P      + S G G+  K     + P  + + P   S  Q A R +++ V   
Sbjct: 203 PRKELPDPSQRPLGEPSAGLGEYLKGRKLDDTPSGAGKFPAGHSVIQLARRQDSDLVQCG 262

Query: 128 -RSAGRREAGGK 138
             S    EA GK
Sbjct: 263 VTSPSSAEATGK 274


>HIR3_HUMAN (Q9BW71) HIRA-interacting protein 3
          Length = 556

 Score = 53.5 bits (127), Expect = 7e-07
 Identities = 61/289 (21%), Positives = 117/289 (40%), Gaps = 51/289 (17%)

Query: 17  REPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGAGGDQNPTDRDQRN 76
           +E +P+R  +  ++  + +R RD   +RG E   + ++          G +  T +    
Sbjct: 128 KEENPRRASKAVEESSDEERQRDLPAQRGEESSEEEEK----------GYKGKTRK---- 173

Query: 77  LPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGRREA- 135
                           K     Q P K S    ++R   + +E    E V R+A + E  
Sbjct: 174 ----------------KPVVKKQAPGKASVSRKQAR---EESEESEAEPVQRTAKKVEGN 214

Query: 136 -GGKAFAQSKENSERVETSQSREQRDEK-SQAKLDDNLHRRDGSPERKDDPPSNTRKRPA 193
            G K+  +S++ SE    +Q +EQR+E+  + + +++  + D  P  +    SN R++ A
Sbjct: 215 KGTKSLKESEQESEEEILAQKKEQREEEVEEEEKEEDEEKGDWKPRTR----SNGRRKSA 270

Query: 194 FREKKIQGDS------GDANPAVSTERVKASHTDHPPERNERKEERSGNPRHLERHEKQI 247
             E+  +  S      GD++     +   +S  D   +R E   +R    R   +  K++
Sbjct: 271 REERSCKQKSQAKRLLGDSDSEEEQKEAASSGDDSGRDR-EPPVQRKSEDRTQLKGGKRL 329

Query: 248 AGDRAPNRSEGRRD----GFSSRARYGGSGGNNNDRGRDKFNARQGYHP 292
           +G        G+ +    G    AR G + G  +D  R+  ++  G  P
Sbjct: 330 SGSSEDEEDSGKGEPTAKGSRKMARLGSTSGEESDLEREVSDSEAGGGP 378


>SFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold
           attachment factor B1) (SAF-B) (HSP27 estrogen response
           element-TATA box-binding protein) (HSP27
           ERE-TATA-binding protein)
          Length = 915

 Score = 53.1 bits (126), Expect = 9e-07
 Identities = 62/297 (20%), Positives = 116/297 (38%), Gaps = 28/297 (9%)

Query: 6   SDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGAGG 65
           S  K ++    ++ S KR   DGK+++  + DR    +R  +  R  D    + G G   
Sbjct: 478 SVEKAKNEPVGKKTSDKR-DSDGKKEKSSNSDRSTNLKRDDKCDRKDDAKKGDDGSGE-- 534

Query: 66  DQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQ 125
                 +DQ +  P P  +  +  +G + +       K    P  S       ER +  Q
Sbjct: 535 ----KSKDQDDQKPGPSERSRATKSGSRGTERTVVMDKSKGVPVISVKTSGSKERASKSQ 590

Query: 126 VGRSAGRREAGGKAFAQSKE-----NSERVETSQSREQRDEKSQAKLDDNLHRRDGSPER 180
             +SA R +    +F + KE     +SE     + R +R+++ QA+ +     R      
Sbjct: 591 DRKSASREKRSVVSFDKVKEPRKSRDSESHSRVRERSEREQRMQAQWEREERER------ 644

Query: 181 KDDPPSNTRKRPAFREKKIQGDSGDANPAVSTERVKASH-TDHPPERNERKEERSGNPRH 239
                   R+R AF+ ++++ +  +    +  ER+   H      ER  R+ E     + 
Sbjct: 645 ----LEIARERLAFQRQRLERERME-RERLERERMHVEHERRREQERIHREREELRRQQE 699

Query: 240 LERHEKQIAGDRAPNRSEGRRDGFSSRARYGGSGGNNNDRGRDKFNARQGYHPIKTR 296
           L   +++    R P   + R D +   A+  G     ++R    FN ++ +H    R
Sbjct: 700 LRYEQERRPAVRRPYDLDRRDDAYWPEAKRAGL----DERYHSDFNRQERFHDFDHR 752


>Y553_HUMAN (Q9UKJ3) Hypothetical protein KIAA0553
          Length = 1089

 Score = 52.8 bits (125), Expect = 1e-06
 Identities = 64/283 (22%), Positives = 101/283 (35%), Gaps = 29/283 (10%)

Query: 19  PSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGAGGDQNPTDRDQRNLP 78
           P+P R RR  + D +R   R    E GS   +D        GGG    Q+   R  +   
Sbjct: 328 PAPPRRRRRAQDDSQR---RSLPAEEGSSGKKDE-------GGGGSSSQDHGGRKHKGEL 377

Query: 79  PPP-------------HSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQ 125
           PP               S +    +GD+ S+D      H   P +     +  + G+   
Sbjct: 378 PPSSCQRRAGTKRSSRSSHRSQPSSGDEDSDDASSHRLHQKSPSQYSEEEEEEDSGSEHS 437

Query: 126 VGRS-AGRREAGGKAFAQSKENSERVETSQSREQRDEK-SQAKLDDNLHRRDGSPERKDD 183
             RS +GRR +  ++  +S  +S    + QS   R    S     D   R     +R  D
Sbjct: 438 RSRSRSGRRHSSHRSSRRSYSSSSDASSDQSCYSRQRSYSDDSYSDYSDRSRRHSKRSHD 497

Query: 184 PPSNTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDHPPERN-ERKEERSGN---PRH 239
              +       R K+ +  S D + ++S  + ++    H  ER+  R   RS +    R 
Sbjct: 498 SDDSDYASSKHRSKRHKYSSSDDDYSLSCSQSRSRSRSHTRERSRSRGRSRSSSCSRSRS 557

Query: 240 LERHEKQIAGDRAPNRSEGRRDGFSSRARYGGSGGNNNDRGRD 282
             R     A     +RS  R    S+R+    SG      G +
Sbjct: 558 KRRSRSTTAHSWQRSRSYSRDRSRSTRSPSQRSGSRKRSWGHE 600



 Score = 43.9 bits (102), Expect = 6e-04
 Identities = 49/207 (23%), Positives = 78/207 (37%), Gaps = 19/207 (9%)

Query: 84  KQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGRREAGGKAFAQS 143
           K + +G+  K      +P     +P +S+      E G  + V  S GR +A     A S
Sbjct: 178 KPKDIGSSSKDHLQGLDP----GEPNKSK------EVGGKKIVRSSGGRMDAPASGSACS 227

Query: 144 KENSERVETSQSREQRDE----KSQAKLDDNLHRRDGSPERKDDPPSNTRKRPAFREKKI 199
             N +    S   E  D      S+ +     HR     E K       + +    EK  
Sbjct: 228 GLNKQEPGGSHGSETEDTGRSLPSKKERSGKSHRHKKKKEHKKSSKHKRKPKADTEEKSS 287

Query: 200 QGDSGDANPAVSTERVKASHTDHPP--ERNERKEER-SGNPRHLERHEKQIAGDRAPNRS 256
           + +SG+ +      + K + +  P   ER  + E   SG+P    R  +  A D +  RS
Sbjct: 288 KAESGEKSKKRKKRKRKKNKSSAPADSERGPKPEPPGSGSPAPPRRRRR--AQDDSQRRS 345

Query: 257 EGRRDGFSSRARYGGSGGNNNDRGRDK 283
               +G S +   GG G ++ D G  K
Sbjct: 346 LPAEEGSSGKKDEGGGGSSSQDHGGRK 372



 Score = 43.1 bits (100), Expect = 0.001
 Identities = 62/275 (22%), Positives = 107/275 (38%), Gaps = 31/275 (11%)

Query: 61  GGAGGDQNPTDRDQRNLPPPPHSKQESVGAGD--KKSNDHQEPPKHSAQPPR-SRSYYQH 117
           GG+ G +  T+   R+LP    SK+E  G     KK  +H++  KH  +P   +      
Sbjct: 235 GGSHGSE--TEDTGRSLP----SKKERSGKSHRHKKKKEHKKSSKHKRKPKADTEEKSSK 288

Query: 118 AERGNTEQVGRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRR--- 174
           AE G   +  +   R++    A A S E   + E   S      + + +  D+  RR   
Sbjct: 289 AESGEKSKKRKKRKRKKNKSSAPADS-ERGPKPEPPGSGSPAPPRRRRRAQDDSQRRSLP 347

Query: 175 --DGSPERKDD--PPSNTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDHPPERNERK 230
             +GS  +KD+    S+++     + K     S     A +    ++SH   P   +E  
Sbjct: 348 AEEGSSGKKDEGGGGSSSQDHGGRKHKGELPPSSCQRRAGTKRSSRSSHRSQPSSGDEDS 407

Query: 231 EERSGNPRHL--------ERHEKQIAGDRAPNRS-EGRRDGF--SSRARYGGSGGNNNDR 279
           ++ S +  H         E  E+    + + +RS  GRR     SSR  Y  S   ++D+
Sbjct: 408 DDASSHRLHQKSPSQYSEEEEEEDSGSEHSRSRSRSGRRHSSHRSSRRSYSSSSDASSDQ 467

Query: 280 ---GRDKFNARQGYHPIKTRTEKWKHDLFQEADND 311
               R +  +   Y     R+ +         D+D
Sbjct: 468 SCYSRQRSYSDDSYSDYSDRSRRHSKRSHDSDDSD 502



 Score = 32.3 bits (72), Expect = 1.7
 Identities = 57/211 (27%), Positives = 73/211 (34%), Gaps = 48/211 (22%)

Query: 5   DSD---SKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGG 61
           DSD   SK R  +     S   Y     Q R R R   RER R   RGR R    +    
Sbjct: 500 DSDYASSKHRSKRHKYSSSDDDYSLSCSQSRSRSRSHTRERSRS--RGRSRSSSCSR--- 554

Query: 62  GAGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERG 121
                   +   +R+     HS Q S      +S   + P + S    R RS+      G
Sbjct: 555 --------SRSKRRSRSTTAHSWQRSRSYSRDRSRSTRSPSQRSGS--RKRSW------G 598

Query: 122 NTEQVGRSAGRREAGGKAFAQSKENSERVETSQS----REQRDEKSQAKLDDNLHRRDGS 177
           +     R +GRR+     F +SK     +  SQS    R  R E    K DD      G 
Sbjct: 599 HESPEERHSGRRD-----FIRSK-----IYRSQSPHYFRSGRGE-GPGKKDDG----RGD 643

Query: 178 PERKDDPPSNTRKRPAFREKKIQGDSGDANP 208
             +   PPS        R     G  GD +P
Sbjct: 644 DSKATGPPSQNSNIGTGR-----GSEGDCSP 669


>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1
           snRNP 70 kDa) (snRNP70) (U1-70K)
          Length = 437

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 33/77 (42%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 4   RDSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRER---ERGSERGRDRDRVTTNGG 60
           RD D + R S         R  R+ ++DR+RDRDRDRE    ERGSERGRD  R    GG
Sbjct: 348 RDRDRERRRSH--------RSERERRRDRDRDRDRDREHKRGERGSERGRDEAR---GGG 396

Query: 61  GGAGGDQNPTDRDQRNL 77
           GG          D R++
Sbjct: 397 GGQDNGLEGLGNDSRDM 413



 Score = 48.9 bits (115), Expect = 2e-05
 Identities = 43/151 (28%), Positives = 62/151 (40%), Gaps = 21/151 (13%)

Query: 4   RDSDSKLRHSKFD--REPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDR------V 55
           RD + + R S+    R  S  R + + ++ RER +D+DR+R+R S R R+R R       
Sbjct: 248 RDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKE 307

Query: 56  TTNGGGG------AGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPP 109
              GGGG        GD  P D     L P      E  G    +  D +    H ++  
Sbjct: 308 ELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKG----RDRDRERRRSHRSERE 363

Query: 110 RSRSYYQHAERGNTE---QVGRSAGRREAGG 137
           R R   +  +R       + G   GR EA G
Sbjct: 364 RRRDRDRDRDRDREHKRGERGSERGRDEARG 394



 Score = 43.1 bits (100), Expect = 0.001
 Identities = 45/186 (24%), Positives = 77/186 (41%), Gaps = 22/186 (11%)

Query: 4   RDSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGA 63
           R   S L H   DR+   +R  R  ++D+ER+R R R R+R   R R RD+         
Sbjct: 222 RPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDR-RRRSRSRDKEERRRSRER 280

Query: 64  GGDQNPTDRDQRNLPPPPHSKQESVGAGDKK--SNDHQEPPKHSAQPPRSRSYYQHAERG 121
             D++  DR +R+      +++E     + +    D  EP +    PP         + G
Sbjct: 281 SKDKD-RDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPP---------DDG 330

Query: 122 NTEQVGRSA--GRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRRD--GS 177
              ++G     G  E G     + ++   R      RE+R ++ + +  D  H+R   GS
Sbjct: 331 PPGELGPDGPDGPEEKG-----RDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGS 385

Query: 178 PERKDD 183
              +D+
Sbjct: 386 ERGRDE 391



 Score = 42.4 bits (98), Expect = 0.002
 Identities = 69/288 (23%), Positives = 106/288 (35%), Gaps = 58/288 (20%)

Query: 27  DGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGAGGDQNPTDRDQRNLPPPPHSKQE 86
           DGK+   R    D ER R  +  R R      GGG  G  +   D + R+          
Sbjct: 165 DGKKIDGRRVLVDVERGRTVKGWRPRRL----GGGLGGTRRGGADVNIRH---------- 210

Query: 87  SVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGRREAGGKAFAQSKEN 146
              +G   ++ + E P  S  P R R   +  ER       RS  R +   +  ++S++ 
Sbjct: 211 ---SGRDDTSRYDERPGPSPLPHRDRDRDRERERRE-----RSRERDKERERRRSRSRDR 262

Query: 147 SERVETSQSREQRDEKSQAKLDDNLHRRDGSPERKDDPPSNTRKRPAFREKKIQGDSGDA 206
             R  +    E+R  + ++K  D   +R  S  R+        +R   R+++++G  GD 
Sbjct: 263 RRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRE------RARRERERKEELRGGGGDM 316

Query: 207 NPAVSTERVKASHTDHPP------------------ERNERKEERSGNPRHLERHEKQIA 248
             A  +E   A   D PP                  +R  R+  RS   R  +R   +  
Sbjct: 317 --AEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDR-- 372

Query: 249 GDRAPNRSEGRRDGFSSR--ARYGGSGGNNNDRG-----RDKFNARQG 289
            DR      G R     R  AR GG G +N   G     RD +   +G
Sbjct: 373 -DRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSRDMYMESEG 419



 Score = 33.1 bits (74), Expect = 0.98
 Identities = 51/211 (24%), Positives = 83/211 (39%), Gaps = 32/211 (15%)

Query: 119 ERGNT------EQVGRSAGRREAGGKAFAQSKENSERVETSQSREQ----------RDEK 162
           ERG T       ++G   G    GG     +  +S R +TS+  E+          RD  
Sbjct: 179 ERGRTVKGWRPRRLGGGLGGTRRGGADV--NIRHSGRDDTSRYDERPGPSPLPHRDRDRD 236

Query: 163 SQAKLDDNLHRRDGSPERKDDPPSNTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDH 222
            + +  +    RD   ER+     + R+R   R+K+ +  S + +     +R + S    
Sbjct: 237 RERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSR 296

Query: 223 PPERNER--KEERSGNPRHLERHEKQIAGDRAPNRSEGRRDGFSSRARYGGSGGNNNDRG 280
              R ER  KEE  G    +   E   AGD  P+      DG        G  G   ++G
Sbjct: 297 ERARRERERKEELRGGGGDMA--EPSEAGDAPPD------DGPPGELGPDGPDG-PEEKG 347

Query: 281 RDKFNARQGYHPIKTRTEKWKHDLFQEADND 311
           RD+   R+  H  ++  E+ + D  ++ D D
Sbjct: 348 RDRDRERRRSH--RSERER-RRDRDRDRDRD 375


>SFRG_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16
           (Suppressor of white-apricot homolog 2) (Clk4
           associating SR-related protein)
          Length = 653

 Score = 50.8 bits (120), Expect = 5e-06
 Identities = 68/287 (23%), Positives = 109/287 (37%), Gaps = 23/287 (8%)

Query: 8   SKLRHSKFDREPSPKRYRRDGKQDRERDR--DRDRERERGSERGRDRDRVTTNGGGGAGG 65
           S  R S      S + Y R G+  R R R   R R R R   R R R R  ++GG   G 
Sbjct: 371 SSSRSSSRSSSRSRRGYYRSGRHARSRSRSWSRSRSRSRRYSRSRSRGRRHSDGGSRDGH 430

Query: 66  DQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQ 125
             + +   +    P   S+  S  +GD+     + P  HS+   RS S+     R  +  
Sbjct: 431 RYSRSPARRGGYVPRRRSRSRS-RSGDRYKRGARGPRHHSSSHSRS-SWSLSPSR--SRS 486

Query: 126 VGRSAGRREAGGKAFAQSKENSERVETSQSREQ--RDEKSQA------KLDDNLHRRDGS 177
           V RS  R ++  ++ +QS   S+    S  RE+  R   S A      K +    +  G+
Sbjct: 487 VTRSGSRSQSRSRSRSQSHSQSQSHSPSPPREKLTRPAASPAVGEKLKKTEPAAGKETGA 546

Query: 178 PERKDDPPSNTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDHPPERNERKEERSGNP 237
            + K  P    + R    +K +         A   + ++  H     ER ER++E     
Sbjct: 547 AKPKLTPQERLKLR---MQKALNRQFKADKKAAQEKMIQQEH-----ERQEREDELRAMA 598

Query: 238 RHLERHEKQ-IAGDRAPNRSEGRRDGFSSRARYGGSGGNNNDRGRDK 283
           R +   E++    +R     +  R   S   RY     ++  R R +
Sbjct: 599 RKIRMKERERREKEREEWERQYSRQSRSPSPRYSREYSSSRRRSRSR 645


>PPIG_RAT (O55035) Peptidyl-prolyl cis-trans isomerase G (EC
           5.2.1.8) (Peptidyl-prolyl isomerase G) (PPIase G)
           (Rotamase G) (Cyclophilin G) (Matrin cyclophilin)
           (Matrin-cyp)
          Length = 752

 Score = 50.8 bits (120), Expect = 5e-06
 Identities = 62/273 (22%), Positives = 108/273 (38%), Gaps = 31/273 (11%)

Query: 21  PKRYRRDGKQDRERDRDRDRERERGSERGRDRDRV----TTNGGGGAGGDQNPTDRDQRN 76
           P+RYR      R R RDR R  E      ++  R      ++G     GD++  +  + N
Sbjct: 336 PRRYRTPS---RSRSRDRFRRSETPPHWRQEMQRAQRMRVSSGERWIKGDKSELNEIKEN 392

Query: 77  LPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGRREAG 136
              P   K+       KK  DH    +H ++ P +R   +  +  + +   +    R   
Sbjct: 393 QRSPVRVKE-------KKITDH----RHMSESP-NRGIEKGGKVKDHKLESKERDIRRNS 440

Query: 137 GKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRRDGSPERKDDPPSNTRKRPAFRE 196
           GK    +K   ++   S+SR +  E+S++K  D+ H R      +        +    +E
Sbjct: 441 GKDDKYNKNKVKKRGKSKSRSKSKERSKSKERDSKHSRHEDKRVRSRSKERDHETTKEKE 500

Query: 197 KKIQGDSGDANPAVSTE---RVKASHTDHPPERNERKEERSGNPRHLER---HEKQIAGD 250
           K++     D   + S E   +V++   +H   +++ K+ R+   R  ER     K     
Sbjct: 501 KQLDSKGKDQERSRSKENSKQVESKSNEHDHSKSKEKDRRA-QSRSRERDLTKSKHSYNS 559

Query: 251 RAPNRSEGRRDGFSSRARYGGSGGNNNDRGRDK 283
           R   RS  R      R+R   S  ++ DR R K
Sbjct: 560 RTRERSRSR-----DRSRRVRSRSHDRDRSRSK 587



 Score = 47.8 bits (112), Expect = 4e-05
 Identities = 69/299 (23%), Positives = 108/299 (36%), Gaps = 44/299 (14%)

Query: 2   SHRDSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERG-SERGRDRDR------ 54
           S   S SK R SK  R    KR R    + +ERD +  +E+E+    +G+D++R      
Sbjct: 463 SKERSKSKERDSKHSRHED-KRVR---SRSKERDHETTKEKEKQLDSKGKDQERSRSKEN 518

Query: 55  ---VTTNGGGGAGGDQNPTDR------DQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHS 105
              V +             DR       +R+L    HS         +  +  +     S
Sbjct: 519 SKQVESKSNEHDHSKSKEKDRRAQSRSRERDLTKSKHSYNSRTRERSRSRDRSRRVRSRS 578

Query: 106 AQPPRSRSYYQHAERGNTEQVGRSAGR-REAGGKAFAQSKENSERVETSQSREQRDEKSQ 164
               RSRS   H  R   EQ  R  GR R    +   +S+    R     SR    E+SQ
Sbjct: 579 HDRDRSRSKEYHRYR---EQEYRRRGRSRSRDRRTPGRSRSKDRRRRRRDSRSSEREESQ 635

Query: 165 AKLDDNLHRRDGSPERKDDPPSNTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDHPP 224
           +        R+    R  D  S+ RK  +  EK++   S D + + +  R K +  D  P
Sbjct: 636 S--------RNKEKYRSQDSKSSHRKENSEGEKRMYSKSRD-HSSSNNNREKKADIDQSP 686

Query: 225 ERNERKEERSGNPRHLERHEKQIAGDRAPNRSEGRRDGFSSRARYGGSGGNNNDRGRDK 283
               ++  +    +      ++    R+P   E ++           S G  ND   DK
Sbjct: 687 VSKTKQSSQDNEVKSSTLKNQEDEKTRSPVEKENQK-----------SKGQENDHVHDK 734



 Score = 47.0 bits (110), Expect = 7e-05
 Identities = 56/244 (22%), Positives = 94/244 (37%), Gaps = 25/244 (10%)

Query: 2   SHRDSDSKLRHSKFDREPSPKRYRRDGK-QDRERDRDRDRER----ERGSERGRDRDRVT 56
           S    +SK   SK +     K   +D + Q R R+RD  + +     R  ER R RDR  
Sbjct: 513 SRSKENSKQVESKSNEHDHSKSKEKDRRAQSRSRERDLTKSKHSYNSRTRERSRSRDRSR 572

Query: 57  TNGGGGAGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQ 116
                    D++ +    R      + +QE    G  +S D +        P RSRS  +
Sbjct: 573 RVRSRSHDRDRSRSKEYHR------YREQEYRRRGRSRSRDRR-------TPGRSRSKDR 619

Query: 117 HAERGNTEQVGRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRRDG 176
              R ++    R   +     K  +Q  ++S R E S+  ++   KS+     N + R+ 
Sbjct: 620 RRRRRDSRSSEREESQSRNKEKYRSQDSKSSHRKENSEGEKRMYSKSRDHSSSN-NNREK 678

Query: 177 SPERKDDPPSNTRKRPAFREKKI-----QGDSGDANPA-VSTERVKASHTDHPPERNERK 230
             +    P S T++     E K      Q D    +P     ++ K    DH  ++N++ 
Sbjct: 679 KADIDQSPVSKTKQSSQDNEVKSSTLKNQEDEKTRSPVEKENQKSKGQENDHVHDKNKKC 738

Query: 231 EERS 234
           +  S
Sbjct: 739 DHES 742



 Score = 46.2 bits (108), Expect = 1e-04
 Identities = 70/325 (21%), Positives = 120/325 (36%), Gaps = 43/325 (13%)

Query: 8   SKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGAGGDQ 67
           SK R    +R  S +R   D K  R  D+   R R R  ER  +  +         G DQ
Sbjct: 457 SKSRSKSKERSKSKER---DSKHSRHEDK---RVRSRSKERDHETTKEKEKQLDSKGKDQ 510

Query: 68  NPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVG 127
               R + N      SKQ      + KSN+H     HS    + R   +   R     + 
Sbjct: 511 E-RSRSKEN------SKQV-----ESKSNEHD----HSKSKEKDR---RAQSRSRERDLT 551

Query: 128 RSAGRREAGGKAFAQSKENSERVET-SQSREQRDEKSQAKLDDNLHRRDGSPERKD-DPP 185
           +S     +  +  ++S++ S RV + S  R++   K   +  +  +RR G    +D   P
Sbjct: 552 KSKHSYNSRTRERSRSRDRSRRVRSRSHDRDRSRSKEYHRYREQEYRRRGRSRSRDRRTP 611

Query: 186 SNTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDHPPERNERKEERSGNPRHLERHEK 245
             +R +   R ++   DS  +    S  R K  +     + + RKE   G  R    + K
Sbjct: 612 GRSRSKDRRRRRR---DSRSSEREESQSRNKEKYRSQDSKSSHRKENSEGEKR---MYSK 665

Query: 246 QIAGDRAPNRSEGRRDGFSSRARYGGSGGNNNDRGRDKFNARQG---YHPIKTRTEKWK- 301
                 + N  E + D   S          +N+        ++      P++   +K K 
Sbjct: 666 SRDHSSSNNNREKKADIDQSPVSKTKQSSQDNEVKSSTLKNQEDEKTRSPVEKENQKSKG 725

Query: 302 ------HDLFQEADNDPVPKNEDDQ 320
                 HD  ++ D++  P  ++D+
Sbjct: 726 QENDHVHDKNKKCDHESSPGTDEDK 750



 Score = 45.4 bits (106), Expect = 2e-04
 Identities = 41/192 (21%), Positives = 83/192 (42%), Gaps = 14/192 (7%)

Query: 4   RDSDSKLRHSKFDREPS-PKRYRRDGKQDRERDRDRDRERER---GSERGRDRDRVTTNG 59
           RD   ++R    DR+ S  K Y R  +Q+  R R R R R+R   G  R +DR R     
Sbjct: 568 RDRSRRVRSRSHDRDRSRSKEYHRYREQEYRR-RGRSRSRDRRTPGRSRSKDRRR----- 621

Query: 60  GGGAGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAE 119
                 D   ++R++         + +   +  +K N   E   +S     S S     +
Sbjct: 622 ---RRRDSRSSEREESQSRNKEKYRSQDSKSSHRKENSEGEKRMYSKSRDHSSSNNNREK 678

Query: 120 RGNTEQVGRSAGRREA-GGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRRDGSP 178
           + + +Q   S  ++ +   +  + + +N E  +T    E+ ++KS+ + +D++H ++   
Sbjct: 679 KADIDQSPVSKTKQSSQDNEVKSSTLKNQEDEKTRSPVEKENQKSKGQENDHVHDKNKKC 738

Query: 179 ERKDDPPSNTRK 190
           + +  P ++  K
Sbjct: 739 DHESSPGTDEDK 750



 Score = 31.2 bits (69), Expect = 3.7
 Identities = 40/206 (19%), Positives = 81/206 (38%), Gaps = 28/206 (13%)

Query: 109 PRSRSYYQHAERGNTEQVGRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKLD 168
           P+S+   +  +R  +     S+   ++   + +QS  +S   ET+   + R  K + + +
Sbjct: 179 PKSKVKKEEKKRHKSSS---SSSSSDSDSSSDSQSSSDSSDSETASEEKSRKRKKKHRKN 235

Query: 169 DNLHRRDGSPERKDDPPSNTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDHPPERNE 228
              H+++    +K      ++K P+    + + D+ DA P  ST R +    + PP    
Sbjct: 236 SRKHKKEKKKRKK------SKKSPS---SESEADNVDAQPQ-STVRPE----EIPPIPEN 281

Query: 229 RKEERSGNPR--HLERHEKQIAGDRAPNRSEGRRDGFSSRARYGGSGGNNNDRGRDKFNA 286
           R   R   P+    ER  ++   +R  N    +   +  R     SG     RG  ++  
Sbjct: 282 RFLMRKSPPKADDKERKNRERERERECNPPNSQPASYQRRFLVTRSGRKIKGRGPRRY-- 339

Query: 287 RQGYHPIKTRTEKWKHDLFQEADNDP 312
                  +T +     D F+ ++  P
Sbjct: 340 -------RTPSRSRSRDRFRRSETPP 358


>CYP1_BRUMA (Q27450) Peptidylprolyl isomerase 1 (EC 5.2.1.8)
           (Peptidylprolyl cis-trans isomerase 1) (PPIase 1)
           (Cyclophilin) (BmCYP-1)
          Length = 843

 Score = 50.4 bits (119), Expect = 6e-06
 Identities = 67/292 (22%), Positives = 114/292 (38%), Gaps = 35/292 (11%)

Query: 4   RDSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGA 63
           R SDSK    K DR+   K    DG++   R++  D +R+  S +    D   T      
Sbjct: 571 RKSDSKEHRGKTDRKHRSKSIEEDGRRSTSREKLDDLKRKETSGQKSQADSEQT-----V 625

Query: 64  GGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNT 123
               N  D +  N     + K + V + +K+ N+  E     A+  +S    Q       
Sbjct: 626 EAKTNVVDSNSDNSKMSVNGKLKEVSSTNKE-NEVSEQKDLKAESTKSEEIKQQV----- 679

Query: 124 EQVGRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRRDGSPERKDD 183
                   R++ GG+   + K N    E S+SR +R  +S  +   +  RR  S +R+  
Sbjct: 680 ----NEVSRKQKGGEKPKEHKRN----ERSRSRRRR-SRSNGRRRRSSSRRSRSRDRR-- 728

Query: 184 PPSNTRKRPAFREKKIQGDSGDANPA--------VSTERVKASHTDHPPERNERKEERSG 235
               +R R     ++ +G S    P         +  ER +    D   +R  R   RS 
Sbjct: 729 --HKSRSRSRGYVRRFEGWSRSRRPTRRELYDERMRRERERRRSFDRYSDR-RRTRSRSA 785

Query: 236 NPRHLERHEKQIAGDRAPNRSEGRRDGFSSRARYGGSGGNNNDRGRDKFNAR 287
             R  +RH ++ +  R+P+ S    +  SS +R   S   ++ R     ++R
Sbjct: 786 R-RDSDRHSRR-SRKRSPSSSSSSSESSSSDSRSTASSSASSKRSSSSDSSR 835



 Score = 43.5 bits (101), Expect = 7e-04
 Identities = 60/269 (22%), Positives = 101/269 (37%), Gaps = 34/269 (12%)

Query: 29  KQDRERDRDRDRERER-GSERGRDRDRVTTNGGGGAGGDQNPTDRDQRNLPPPPHSKQES 87
           K   E+ +   +  E+ G + GRD+  ++         D    DR  R      H   E 
Sbjct: 497 KMAEEKTKQEAKMLEKTGDKEGRDQKTISE----AKQKDSAEKDRQHRE-----HKNDEL 547

Query: 88  VGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGRREAGGKAFAQSK-EN 146
                +K +  Q   + +    R +S  +   RG T++  RS    E G ++ ++ K ++
Sbjct: 548 EKRAIEKQDKDQIVERDTGSKQRRKSDSKE-HRGKTDRKHRSKSIEEDGRRSTSREKLDD 606

Query: 147 SERVETSQSREQRDEKSQAK-----LDDNLHRRDGSPERKDDPPSNTRKRPAFREKKIQG 201
            +R ETS  + Q D +   +     +D N      S   K    S+T K     E+K   
Sbjct: 607 LKRKETSGQKSQADSEQTVEAKTNVVDSNSDNSKMSVNGKLKEVSSTNKENEVSEQK--- 663

Query: 202 DSGDANPAVSTERVKASHTDHPPERNERKEERSGNPRHLERHEKQIAGDRAPNRSEGRRD 261
                   +  E  K+           RK++    P+  +R+E+     R  +RS GRR 
Sbjct: 664 -------DLKAESTKSEEIKQQVNEVSRKQKGGEKPKEHKRNERS-RSRRRRSRSNGRRR 715

Query: 262 GFSSRARYGGSGGNNNDRGRDKFNARQGY 290
             SSR         + DR     +  +GY
Sbjct: 716 RSSSRR------SRSRDRRHKSRSRSRGY 738


>PR16_HUMAN (Q92620) Pre-mRNA splicing factor ATP-dependent RNA
           helicase PRP16 (EC 3.6.1.-) (ATP-dependent RNA helicase
           DHX38) (DEAH-box protein 38)
          Length = 1227

 Score = 50.1 bits (118), Expect = 8e-06
 Identities = 60/263 (22%), Positives = 101/263 (37%), Gaps = 49/263 (18%)

Query: 26  RDGKQDRERDRDRDRERERGS-ERGRDRDRVTTNGGGGAGGDQNPTDRDQ---RNLPPPP 81
           +D K+++ RDRD DR+R+R   +R R   R   +GG      +N  +  +   ++   P 
Sbjct: 152 KDWKKEKSRDRDYDRKRDRDERDRSRHSSRSERDGGSERSSRRNEPESPRHRPKDAATPS 211

Query: 82  HS--KQESVGAGDKKSNDHQEPP-------------------------KHSAQPPRSRSY 114
            S  ++E  G G  + +  + P                          K+S   P     
Sbjct: 212 RSTWEEEDSGYGSSRRSQWESPSPTPSYRDSERSHRLSTRDRDRSVRGKYSDDTPLPTPS 271

Query: 115 YQHAE-------RGNTEQVGRSAGRREAGGKAFA-QSKENSERVETSQSREQRDEKSQAK 166
           Y++ E        G+T ++ R  GRRE G +  +  ++E  ++ E  Q +  RD     +
Sbjct: 272 YKYNEWADDRRHLGSTPRLSRGRGRREEGEEGISFDTEEERQQWEDDQRQADRDWYMMDE 331

Query: 167 LDDNLHR------RDGSPERKDDPPSNTRKRPAFREKKIQGDSGDANPAVSTERVKASHT 220
             D  H        D    R+       +KR + + ++I  D    N    T R+  S  
Sbjct: 332 GYDEFHNPLAYSSEDYVRRREQHLHKQKQKRISAQRRQINED----NERWETNRMLTSGV 387

Query: 221 DHPPERNERKEERSGNPRHLERH 243
            H  E +E  EE +    HL  H
Sbjct: 388 VHRLEVDEDFEEDNAAKVHLMVH 410



 Score = 36.2 bits (82), Expect = 0.12
 Identities = 65/302 (21%), Positives = 104/302 (33%), Gaps = 42/302 (13%)

Query: 20  SPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGAGGDQNPTDRDQRNLPP 79
           S KR  R+ K D E  +       +  E  +D  +     GG   G     DR  R+   
Sbjct: 56  SLKRREREEKDDGEDKKKSKVSSYKDWEESKDDQKDAEEEGGDQAGQNIRKDRHYRSA-- 113

Query: 80  PPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGRREAGGKA 139
                               E P H      S  +++ + +       R   RRE G   
Sbjct: 114 ------------------RVETPSHPGGV--SEEFWERSRQ-------RERERREHG--V 144

Query: 140 FAQSKENSE-RVETSQSREQRDEKSQAKLDDNLH----RRDGSPER--KDDPPSNTRKRP 192
           +A SKE  + + E S+ R+   ++ + + D + H     RDG  ER  + + P + R RP
Sbjct: 145 YASSKEEKDWKKEKSRDRDYDRKRDRDERDRSRHSSRSERDGGSERSSRRNEPESPRHRP 204

Query: 193 --AFREKKIQGDSGDANPAVSTERVKASHTDHPPER-NERKEERSGNPRHLERHEKQIAG 249
             A    +   +  D+    S      S +  P  R +ER    S   R      K    
Sbjct: 205 KDAATPSRSTWEEEDSGYGSSRRSQWESPSPTPSYRDSERSHRLSTRDRDRSVRGKYSDD 264

Query: 250 DRAPNRSEGRRDGFSSRARYGGSGGNNNDRGRDKFNARQGYHPIKTRTEKWKHDLFQEAD 309
              P  S    +    R   G +   +  RGR +          +   ++W+ D  ++AD
Sbjct: 265 TPLPTPSYKYNEWADDRRHLGSTPRLSRGRGRREEGEEGISFDTEEERQQWEDDQ-RQAD 323

Query: 310 ND 311
            D
Sbjct: 324 RD 325


>YNE1_CAEEL (P30640) Hypothetical protein R08D7.1 in chromosome III
          Length = 458

 Score = 49.7 bits (117), Expect = 1e-05
 Identities = 42/199 (21%), Positives = 81/199 (40%), Gaps = 17/199 (8%)

Query: 8   SKLRHSKFDREPSPKRYRRDGKQD----RERDRDRDRERERGSERGRDRDRVTTNGGGGA 63
           S+ R+   +  P P R R D  +D    R R  D D    R S + R+      N     
Sbjct: 122 SRKRNDSDNSPPRPSRNRHDSDKDNSPPRRRRHDSDNSPPRPSRKIREESPSARNRRSPP 181

Query: 64  GGDQNPTDRDQRNLPPPPHSKQESVGA---------GDKKSNDHQEPPKHSAQPPRSRSY 114
              ++  D D  N PP   S+++S  +           ++ +D   PP+ S +    +  
Sbjct: 182 RTRRDRHDSD--NSPPRNRSRRDSDNSPPRRRPSSPARRRKDDDLSPPRKSRKIEEPKKI 239

Query: 115 YQHAERGNTEQVGRSAGRREAGGKAFAQSKENSERVETSQSR--EQRDEKSQAKLDDNLH 172
            +     +TE  GR+   + +G ++    KE S+++    S+  E+ D     +  D ++
Sbjct: 240 KKEEPDSDTETSGRTLEGKRSGLQSARDLKEESDKLRAKNSKMFEEMDTSVSGRFADTVY 299

Query: 173 RRDGSPERKDDPPSNTRKR 191
           R+  + ++  D   +  K+
Sbjct: 300 RQKQTKKKGKDSEEDQAKK 318



 Score = 36.6 bits (83), Expect = 0.089
 Identities = 41/184 (22%), Positives = 71/184 (38%), Gaps = 11/184 (5%)

Query: 73  DQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGR 132
           D  N PP P  K+        + + ++        PPR R   +H    +  +  R   R
Sbjct: 113 DSDNSPPRPSRKRNDSDNSPPRPSRNRHDSDKDNSPPRRR---RHDSDNSPPRPSRKI-R 168

Query: 133 REAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDN-LHRRDGSP--ERKDDPPSNTR 189
            E+      +S   + R            +S+   D++   RR  SP   RKDD  S  R
Sbjct: 169 EESPSARNRRSPPRTRRDRHDSDNSPPRNRSRRDSDNSPPRRRPSSPARRRKDDDLSPPR 228

Query: 190 KRPAFRE-KKIQGDSGDANPAVSTERVKASHTDHPPERNERKEE---RSGNPRHLERHEK 245
           K     E KKI+ +  D++   S   ++   +     R+ ++E    R+ N +  E  + 
Sbjct: 229 KSRKIEEPKKIKKEEPDSDTETSGRTLEGKRSGLQSARDLKEESDKLRAKNSKMFEEMDT 288

Query: 246 QIAG 249
            ++G
Sbjct: 289 SVSG 292



 Score = 36.2 bits (82), Expect = 0.12
 Identities = 59/282 (20%), Positives = 106/282 (36%), Gaps = 46/282 (16%)

Query: 1   MSHRDSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGG 60
           +S    D + +  K +++ +     R  ++D     D  + R+ GS+  R+   V     
Sbjct: 12  LSPASGDIEKKKKKKNKDKNKPSGLRLIEEDAFLSVDAAKTRDIGSDEEREEIEVLKQSV 71

Query: 61  GGA----GGDQNPTDRDQ-RNLPPPPHSKQESVGAGDKKSNDHQE-PPKHSAQ------- 107
             A    G  Q   + D  + + P P S   S   G ++ +D    PP+ S +       
Sbjct: 72  KKAKVVHGFKQTFAEVDAPKVIKPEPLSPDNSPPRGKRQRHDSDNSPPRPSRKRNDSDNS 131

Query: 108 PPRSRSYYQHAERGNTEQVGRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKL 167
           PPR       +++ N+    R   R ++       S++  E     +S   R+ +S  + 
Sbjct: 132 PPRPSRNRHDSDKDNSPPRRR---RHDSDNSPPRPSRKIRE-----ESPSARNRRSPPRT 183

Query: 168 DDNLHRRDGSP----ERKDDPPSNTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDHP 223
             + H  D SP     R+D   S  R+RP+   ++ + D                  D  
Sbjct: 184 RRDRHDSDNSPPRNRSRRDSDNSPPRRRPSSPARRRKDD------------------DLS 225

Query: 224 PERNERKEERSGNPRHLERHEKQIAGDRAPNRSEGRRDGFSS 265
           P R  RK E    P+ +++ E     + +    EG+R G  S
Sbjct: 226 PPRKSRKIEE---PKKIKKEEPDSDTETSGRTLEGKRSGLQS 264


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.307    0.128    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,036,042
Number of Sequences: 164201
Number of extensions: 2285960
Number of successful extensions: 12642
Number of sequences better than 10.0: 657
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 528
Number of HSP's that attempted gapping in prelim test: 8824
Number of HSP's gapped (non-prelim): 2233
length of query: 330
length of database: 59,974,054
effective HSP length: 111
effective length of query: 219
effective length of database: 41,747,743
effective search space: 9142755717
effective search space used: 9142755717
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 66 (30.0 bits)


Lotus: description of TM0218.18