BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0218.18
(330 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SFR4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4 63 1e-09
SFRC_RAT (Q9JKL7) Splicing factor, arginine/serine-rich 12 (Seri... 60 1e-08
SFRC_HUMAN (Q8WXA9) Splicing factor, arginine/serine-rich 12 (Se... 60 1e-08
SFRB_HUMAN (Q05519) Splicing factor arginine/serine-rich 11 (Arg... 59 2e-08
SFRC_MOUSE (Q8BZX4) Splicing factor, arginine/serine-rich 12 (Se... 57 6e-08
SFRF_HUMAN (O95104) Splicing factor, arginine/serine-rich 15 (CT... 56 1e-07
CYL2_BOVIN (Q28092) Cylicin II (Multiple-band polypeptide II) 56 1e-07
SFR4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pre... 55 2e-07
SSRP_CAEEL (P41848) Probable structure-specific recognition prot... 55 3e-07
RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U... 55 3e-07
CBX8_HUMAN (Q9HC52) Chromobox protein homolog 8 (Polycomb 3 homo... 54 4e-07
HIR3_HUMAN (Q9BW71) HIRA-interacting protein 3 54 7e-07
SFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attac... 53 9e-07
Y553_HUMAN (Q9UKJ3) Hypothetical protein KIAA0553 53 1e-06
RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U... 51 3e-06
SFRG_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (Su... 51 5e-06
PPIG_RAT (O55035) Peptidyl-prolyl cis-trans isomerase G (EC 5.2.... 51 5e-06
CYP1_BRUMA (Q27450) Peptidylprolyl isomerase 1 (EC 5.2.1.8) (Pep... 50 6e-06
PR16_HUMAN (Q92620) Pre-mRNA splicing factor ATP-dependent RNA h... 50 8e-06
YNE1_CAEEL (P30640) Hypothetical protein R08D7.1 in chromosome III 50 1e-05
>SFR4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4
Length = 489
Score = 62.8 bits (151), Expect = 1e-09
Identities = 65/278 (23%), Positives = 100/278 (35%), Gaps = 32/278 (11%)
Query: 2 SHRDSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGG 61
SH S S+ RHS+ R R G + R R R R + R R +
Sbjct: 190 SHSRSRSRSRHSRKSRS-------RSGSSKSSHSKSRSRSRSGSHSRSKSRSRSQSRSRS 242
Query: 62 GAGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPP---KHSAQPPRSRSYYQHA 118
++P+ +D ++ S+ S KS DH E SA +S S +H
Sbjct: 243 KKEKSRSPS-KDNKS-----RSRSRSPDKSRSKSKDHAEDKLQNNDSAGKAKSHSPSRHD 296
Query: 119 ERGNTEQVGRSAGRREAGGKAFAQSKENSERVE------TSQSREQRDEKSQAKLDDNLH 172
+ + R A + A+S+E S E S+SR + +S+ K
Sbjct: 297 SKSRSRSQERRAEEERRRSVSRARSQEKSRSQEKSLLKSRSRSRSRSRSRSKDKRKGRKR 356
Query: 173 RRDGSPERKDDPPSNTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDH--PPERNERK 230
RD S R +RK + R+ K+ S + K TDH P R+ K
Sbjct: 357 SRDESRSRSRSKSERSRKHSSKRDSKVSSSSSSSK--------KKKDTDHSRSPSRSVSK 408
Query: 231 EERSGNPRHLERHEKQIAGDRAPNRSEGRRDGFSSRAR 268
E +R + APN R +S+++
Sbjct: 409 EREHAKAESGQRGSRAEGESEAPNPEPRARSRSTSKSK 446
Score = 61.6 bits (148), Expect = 3e-09
Identities = 53/262 (20%), Positives = 92/262 (34%), Gaps = 7/262 (2%)
Query: 2 SHRDSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGG 61
SH S S+ R R K R K ++ R R R ++ R + D++ N
Sbjct: 226 SHSRSKSRSRSQSRSRSKKEKS-RSPSKDNKSRSRSRSPDKSRSKSKDHAEDKLQNNDSA 284
Query: 62 GAGGDQNPTDRDQRNLPPPPHSKQESV---GAGDKKSNDHQEPPKHSAQPPRSRSYYQHA 118
G +P+ D ++ + E +S + + S RSRS +
Sbjct: 285 GKAKSHSPSRHDSKSRSRSQERRAEEERRRSVSRARSQEKSRSQEKSLLKSRSRSRSRSR 344
Query: 119 ERGNTEQVGRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRRDGSP 178
R ++ GR R E+ ++ ++S+ + + S+ S K D H R SP
Sbjct: 345 SRSKDKRKGRKRSRDESRSRSRSKSERSRKHSSKRDSKVSSSSSSSKKKKDTDHSR--SP 402
Query: 179 ERK-DDPPSNTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDHPPERNERKEERSGNP 237
R + + R + +G+S NP S + R +S +
Sbjct: 403 SRSVSKEREHAKAESGQRGSRAEGESEAPNPEPRARSRSTSKSKPNVPAESRSRSKSASK 462
Query: 238 RHLERHEKQIAGDRAPNRSEGR 259
+ R+P+RS R
Sbjct: 463 TRSRSKSPSRSASRSPSRSRSR 484
Score = 45.8 bits (107), Expect = 1e-04
Identities = 52/234 (22%), Positives = 89/234 (37%), Gaps = 22/234 (9%)
Query: 91 GDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGRREAGGKAFAQSKENSERV 150
G ++ + HS RSR + R + + S R + + ++SK S
Sbjct: 178 GSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSHSRSKSRSRSQ 237
Query: 151 ETSQSREQRDEKSQAKLDDNLHR-RDGSPERKDDPPSNTRKRPAFREKKIQGDSGDANPA 209
S+S++ EKS++ DN R R SP++ S ++ + +K DS +
Sbjct: 238 SRSRSKK---EKSRSPSKDNKSRSRSRSPDK-----SRSKSKDHAEDKLQNNDSAGKAKS 289
Query: 210 VSTERVKASHTDHPPERNERKEERSGNPRHLER-----HEKQIAGDRAPNRSEGRRDGFS 264
S R + ER +E R R + EK + R+ +RS R
Sbjct: 290 HSPSRHDSKSRSRSQERRAEEERRRSVSRARSQEKSRSQEKSLLKSRSRSRSRSR----- 344
Query: 265 SRARYGGSGGNNNDRGRDKFNARQGYHPIKTRTEKWKHDLFQEADNDPVPKNED 318
SR++ G R RD+ +R ++R K D + + K +D
Sbjct: 345 SRSKDKRKG---RKRSRDESRSRSRSKSERSRKHSSKRDSKVSSSSSSSKKKKD 395
Score = 30.4 bits (67), Expect = 6.4
Identities = 28/118 (23%), Positives = 40/118 (33%), Gaps = 18/118 (15%)
Query: 8 SKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGAGGDQ 67
S R SK S + ++D R R +ERE R G A G+
Sbjct: 376 SSKRDSKVSSSSSSSKKKKDTDHSRSPSRSVSKEREHAKAESGQR-------GSRAEGES 428
Query: 68 ---NP--------TDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSY 114
NP T + + N+P S+ +S +S S RSRS+
Sbjct: 429 EAPNPEPRARSRSTSKSKPNVPAESRSRSKSASKTRSRSKSPSRSASRSPSRSRSRSH 486
>SFRC_RAT (Q9JKL7) Splicing factor, arginine/serine-rich 12
(Serine-arginine-rich splicing regulatory protein 86)
(SRrp86) (SR-related protein of 86 kDa)
Length = 494
Score = 59.7 bits (143), Expect = 1e-08
Identities = 50/239 (20%), Positives = 93/239 (37%), Gaps = 17/239 (7%)
Query: 4 RDSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGA 63
R S S+ R ++ K R +++RE++++R++ERE+ ERG+++D+
Sbjct: 252 RKSRSRSRSRDKRKDTREKVKERVKEREREKEKEREKEREKDKERGKNKDKDREKEKDHE 311
Query: 64 GGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNT 123
+++Q + + KK + PP+ RSRS A R
Sbjct: 312 KERDKEKEKEQDKDKEREKDRSKEADEKRKKEKKSRTPPRSYNSSRRSRS----ASRERR 367
Query: 124 EQVGRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHR---------- 173
+ RS+ R K + S +E++ EK + + D R
Sbjct: 368 RRRSRSSSRSPRTSKTIKRKSSRSPSPRGRNKKEKKREKERDHISDRRERERSTSTKKSS 427
Query: 174 --RDGSPE-RKDDPPSNTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDHPPERNER 229
RDG + K + P ++ + + D+ + + A + E KA H + ER
Sbjct: 428 SDRDGKEKVEKTNTPVKEKEHSKEADSTVSTDADEKDTARTEEESKAQHNGNCQPHEER 486
Score = 52.4 bits (124), Expect = 2e-06
Identities = 58/268 (21%), Positives = 102/268 (37%), Gaps = 39/268 (14%)
Query: 2 SHRDSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGG 61
SH S S+ R + R +R R R +DR R + + R + R
Sbjct: 197 SHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRARSKSPHKKRSKSR------- 249
Query: 62 GAGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERG 121
K S K D +E K + R R + E+
Sbjct: 250 -------------------ERRKSRSRSRSRDKRKDTREKVKERVK-EREREKEKEREKE 289
Query: 122 NTEQVGRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRRDGSPERK 181
+ R + + K KE + E Q +++ EK ++K D +++ ++
Sbjct: 290 REKDKERGKNKDKDREKEKDHEKERDKEKEKEQDKDKEREKDRSKEADEKRKKE---KKS 346
Query: 182 DDPP----SNTRKRPAFRE-KKIQGDSGDANPAVS-TERVKASHTDHPPERNERKEERSG 235
PP S+ R R A RE ++ + S +P S T + K+S + P RN+++++R
Sbjct: 347 RTPPRSYNSSRRSRSASRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRGRNKKEKKREK 406
Query: 236 NPRHL-ERHEKQIAGDRAPNRSEGRRDG 262
H+ +R E++ + +S RDG
Sbjct: 407 ERDHISDRRERE--RSTSTKKSSSDRDG 432
Score = 47.0 bits (110), Expect = 7e-05
Identities = 69/331 (20%), Positives = 116/331 (34%), Gaps = 26/331 (7%)
Query: 5 DSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERER------GSERGRDRDRVTTN 58
D K+ HS P+ + ++ E R RE + E G+ +R
Sbjct: 135 DRPLKINHSNNAIVKPPEMTPQAAAKELEEVMKRVREAQSFISAAIEPESGKSNER---- 190
Query: 59 GGGGAGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHA 118
GG R + HS+++ K S Q R+RS H
Sbjct: 191 ----KGGRSRSHTRSKSRSSSKSHSRRKR---SQSKHRSRSHNRSRSRQKDRARSKSPHK 243
Query: 119 ERGNTEQVGRSAGRREAGGKAFAQSKENSERV-ETSQSREQRDEKSQAKLDDNLHRRDGS 177
+R + + +S R + K ++ ERV E + +E+ EK + K + +D
Sbjct: 244 KRSKSRERRKSRSRSRSRDKRKDTREKVKERVKEREREKEKEREKEREKDKERGKNKDKD 303
Query: 178 PERKDDPPSNTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDHPPERNERKEERSGNP 237
E++ D K + K + D + +R K + PP R+ RS +
Sbjct: 304 REKEKDHEKERDKEKEKEQDKDKEREKDRSKEADEKRKKEKKSRTPP-RSYNSSRRSRSA 362
Query: 238 RHLERHEKQIAGDRAPNRSE--GRRDGFSSRARYGGSGGNNNDRGRDKFNARQGYHPIKT 295
R + + R+P S+ R+ S R ++ RD + R+ T
Sbjct: 363 SRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRGRNKKEKKREKERDHISDRR-ERERST 421
Query: 296 RTEKWKHDL----FQEADNDPVPKNEDDQIA 322
T+K D E N PV + E + A
Sbjct: 422 STKKSSSDRDGKEKVEKTNTPVKEKEHSKEA 452
>SFRC_HUMAN (Q8WXA9) Splicing factor, arginine/serine-rich 12
(Serine-arginine-rich splicing regulatory protein 86)
(SRrp86) (Splicing regulatory protein 508) (SRrp508)
Length = 508
Score = 59.7 bits (143), Expect = 1e-08
Identities = 53/241 (21%), Positives = 94/241 (38%), Gaps = 10/241 (4%)
Query: 6 SDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGAGG 65
S S R + D K R ++DRE++R+R++ERE+ ERG+++DR
Sbjct: 253 SRSHSRDKRKDTREKIKEKERVKEKDREKEREREKEREKEKERGKNKDRDKEREKDREKD 312
Query: 66 DQNPTDRDQRNLPPPPHSKQ---------ESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQ 116
+ +R++ K+ E K+ ++ ++ K S PPRS + +
Sbjct: 313 KEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRSKEIDEKRKKDKKSRTPPRSYNASR 372
Query: 117 HAERGNTEQVGRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRRDG 176
+ + E+ R + + K S R + +SR ++D+K + + D RR+
Sbjct: 373 RSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERDHISERRER 432
Query: 177 SPERKDDPPSNTRKRPAFREKKIQG-DSGDANPAVSTERVKASHTDHPPERNERKEERSG 235
SN R EK + N + K P E K + +G
Sbjct: 433 ERSTSMRKSSNDRDGKEKLEKNSTSLKEKEHNKEPDSSVSKEVDDKDAPRTEENKIQHNG 492
Query: 236 N 236
N
Sbjct: 493 N 493
Score = 59.7 bits (143), Expect = 1e-08
Identities = 69/328 (21%), Positives = 129/328 (39%), Gaps = 41/328 (12%)
Query: 2 SHRDSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGG 61
SH S S+ R + R +R R R +DR R + + R + R
Sbjct: 194 SHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKKRSKSRERRK--- 250
Query: 62 GAGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERG 121
RD+R ++E V D++ +E + + R ++ + ER
Sbjct: 251 ---SRSRSHSRDKRKDTREKIKEKERVKEKDREKEREREKEREK-EKERGKNKDRDKERE 306
Query: 122 NTEQVGRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRRDGSPERK 181
+ + R K K+ + E Q +E+ EK ++K D ++D ++
Sbjct: 307 KDREKDKEKDREREREK--EHEKDRDKEKEKEQDKEKEREKDRSKEIDEKRKKD---KKS 361
Query: 182 DDPP----SNTRKRPAFRE-KKIQGDSGDANPAVS-TERVKASHTDHPPERNERKEERSG 235
PP ++ R R + RE ++ + S +P S T + K+S + P RN++ ++R
Sbjct: 362 RTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREK 421
Query: 236 NPRHL-ERHEKQIAGDRAPNRSEGRRDGFSSRARYGGSGGNNNDR-GRDKFNARQGYHPI 293
H+ ER E++ RS R ++NDR G++K
Sbjct: 422 ERDHISERRERE--------RSTSMRK-------------SSNDRDGKEKLEKNSTSLKE 460
Query: 294 KTRTEKWKHDLFQEADNDPVPKNEDDQI 321
K ++ + +E D+ P+ E+++I
Sbjct: 461 KEHNKEPDSSVSKEVDDKDAPRTEENKI 488
Score = 35.4 bits (80), Expect = 0.20
Identities = 39/186 (20%), Positives = 66/186 (34%), Gaps = 22/186 (11%)
Query: 127 GRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRRDGSPERKDDPPS 186
G+S R+ GG++ + ++ S S SR +R + N R R+ P
Sbjct: 182 GKSNERK--GGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPH 239
Query: 187 NTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDHPPERNERKEERSGNPRHLERHEKQ 246
+KR RE++ + R K + E++ KE R ER +++
Sbjct: 240 --KKRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKEKDREKERE----REKEREKEK 293
Query: 247 IAGDRAPNRSEGRRDGFSSRARYGGSGGNNNDRGRDKFNARQGYHPIKTRTEKWK-HDLF 305
G E +D D+ +D+ R+ H EK K D
Sbjct: 294 ERGKNKDRDKEREKD-------------REKDKEKDREREREKEHEKDRDKEKEKEQDKE 340
Query: 306 QEADND 311
+E + D
Sbjct: 341 KEREKD 346
>SFRB_HUMAN (Q05519) Splicing factor arginine/serine-rich 11
(Arginine-rich 54 kDa nuclear protein) (p54)
Length = 484
Score = 58.5 bits (140), Expect = 2e-08
Identities = 60/244 (24%), Positives = 94/244 (37%), Gaps = 23/244 (9%)
Query: 7 DSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGAGGD 66
+ K RHS R S R RR R R R R R R R + R R R
Sbjct: 243 EEKRRHS---RSRSRSRRRRTPSSSRHR-RSRSRSRRRSHSKSRSRRR-----------S 287
Query: 67 QNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQV 126
++P R + S+ S DKK D ++ K S PP+S Y A R +
Sbjct: 288 KSPRRRRSHSRERGRRSRSTSK-TRDKKKEDKEK--KRSKTPPKS---YSTARRSRSASR 341
Query: 127 GRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRRDGSPERKDDPPS 186
R R +G ++ K S + + S+S R K + K D + R ER
Sbjct: 342 ERRRRRSRSGTRS--PKKPRSPKRKLSRSPSPRRHKKEKKKDKDKERSRDERERSTSKKK 399
Query: 187 NTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDHPPERNERKEERSGNPRHLERHEKQ 246
++ + RE+K + D + + + ++ E+K +G+P+ E ++
Sbjct: 400 KSKDKEKDRERKSESDKDVKQVTRDYDEEEQGYDSEKEKKEEKKPIETGSPKTKECSVEK 459
Query: 247 IAGD 250
GD
Sbjct: 460 GTGD 463
Score = 50.4 bits (119), Expect = 6e-06
Identities = 49/241 (20%), Positives = 89/241 (36%), Gaps = 28/241 (11%)
Query: 4 RDSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSE----RGRDRDRVTTNG 59
R S S+ R S+ R PS R+RR + R R + R R R R R+R +
Sbjct: 247 RHSRSRSR-SRRRRTPSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSRERGRRSR 305
Query: 60 GGGAGGDQNPTDRDQRNLPPPPHS--------------KQESVGAGDKKSNDHQEPPKHS 105
D+ D++++ PP S ++ +G + + P +
Sbjct: 306 STSKTRDKKKEDKEKKRSKTPPKSYSTARRSRSASRERRRRRSRSGTRSPKKPRSPKRKL 365
Query: 106 AQPPRSRSYYQHAERGNTEQVGRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQA 165
++ P R + + ++ ++ R R K ++ KE +S +D K
Sbjct: 366 SRSPSPRRHKKEKKKDKDKERSRDERERSTSKKKKSKDKEKDRE---RKSESDKDVKQVT 422
Query: 166 K-LDDNLHRRDGSPERKDDPPSNTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDHPP 224
+ D+ D E+K++ P +E ++ +GD S K + DH
Sbjct: 423 RDYDEEEQGYDSEKEKKEEKKPIETGSPKTKECSVEKGTGD-----SLRESKVNGDDHHE 477
Query: 225 E 225
E
Sbjct: 478 E 478
Score = 40.8 bits (94), Expect = 0.005
Identities = 55/226 (24%), Positives = 87/226 (38%), Gaps = 38/226 (16%)
Query: 92 DKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGRREAGGKAFAQSKENSERVE 151
DKK +E +HS RSRS + + + RS RR + K+ ++ + S R
Sbjct: 240 DKK----EEKRRHSRS--RSRSRRRRTPSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRR 293
Query: 152 TSQSREQ----------RD------EKSQAKLDDNLHRRDGSPERKDDPPSNTRKRPAFR 195
S SRE+ RD EK ++K + S R+ S R+R R
Sbjct: 294 RSHSRERGRRSRSTSKTRDKKKEDKEKKRSKTPPKSY----STARRSRSASRERRRRRSR 349
Query: 196 EKKIQGDSGDANPAVSTERVKASHTDHPPERNERKEERSGNPRHLERHEKQIAGDRAPNR 255
SG +P K + P R +KE++ + R E+ +R+ ++
Sbjct: 350 -------SGTRSPK-KPRSPKRKLSRSPSPRRHKKEKKKDKDKERSRDER----ERSTSK 397
Query: 256 SEGRRDGFSSRARYGGSGGNNNDRGRDKFNARQGYHPIKTRTEKWK 301
+ +D R R S + RD QGY K + E+ K
Sbjct: 398 KKKSKDKEKDRERKSESDKDVKQVTRDYDEEEQGYDSEKEKKEEKK 443
Score = 31.6 bits (70), Expect = 2.9
Identities = 44/176 (25%), Positives = 65/176 (36%), Gaps = 16/176 (9%)
Query: 129 SAGRREAGGKAFAQSKENSE---RVETSQSREQRDEKSQAKLDDNLHRRDGSPERKDDPP 185
+AG K+ SKE E RV +QS + K + H R S R+ P
Sbjct: 202 AAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEKRRHSRSRSRSRRRRTP 261
Query: 186 SNTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDHPPERNERKEERSGNPRHLERHEK 245
S++R R + + + S + S R K+ P R ER R +
Sbjct: 262 SSSRHRRSRSRSRRRSHS----KSRSRRRSKS-----PRRRRSHSRERGRRSRSTSKTRD 312
Query: 246 QIAGDRAPNRSEGRRDGFSSRARYGGSGGNNNDRGRDKFNARQGYHPIKTRTEKWK 301
+ D+ RS+ +S+ AR S R R + R P K R+ K K
Sbjct: 313 KKKEDKEKKRSKTPPKSYST-ARRSRSASRERRRRRSRSGTRS---PKKPRSPKRK 364
>SFRC_MOUSE (Q8BZX4) Splicing factor, arginine/serine-rich 12
(Serine-arginine-rich splicing regulatory protein 86)
(SRrp86)
Length = 494
Score = 57.0 bits (136), Expect = 6e-08
Identities = 53/254 (20%), Positives = 107/254 (41%), Gaps = 25/254 (9%)
Query: 4 RDSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGA 63
R S S+ R ++ K R +++RE++R+R+++RE+ ERG+++D+
Sbjct: 252 RKSRSRSRSRDKRKDTREKVKERVKEKEREKEREREKDREKDKERGKNKDKDREK----- 306
Query: 64 GGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNT 123
+ +RD+ K+ K++++ ++ K S PPRS N
Sbjct: 307 -EKDHEKERDKEKEKEQDKDKEREKDR-SKETDEKRKKEKKSRTPPRSY---------NA 355
Query: 124 EQVGRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRRDGSPERKDD 183
+ RS R + +S+ +S TS++ +++ +S + N +++ E++ D
Sbjct: 356 SRRSRSTSRE----RRRRRSRSSSRSPRTSKTVKRKSSRSPSPRGRN--KKEKKREKERD 409
Query: 184 PPSNTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDHPPERN---ERKEERSGNPRHL 240
S+ R+R K D V +H E + + + G+PR
Sbjct: 410 HISDRRERERSTSTKKSSGDRDGKEKVEKSTTPVKEKEHSKESDATVSKAADEKGSPRTE 469
Query: 241 ERHEKQIAGDRAPN 254
+ + Q G+ PN
Sbjct: 470 DEGKVQHNGNCQPN 483
Score = 52.4 bits (124), Expect = 2e-06
Identities = 56/268 (20%), Positives = 102/268 (37%), Gaps = 39/268 (14%)
Query: 2 SHRDSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGG 61
SH S S+ R + R +R R R +DR R + + R + R
Sbjct: 197 SHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKKRSKSR------- 249
Query: 62 GAGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERG 121
K S K D +E K + + R + E+
Sbjct: 250 -------------------ERRKSRSRSRSRDKRKDTREKVKERVK-EKEREKEREREKD 289
Query: 122 NTEQVGRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRRDGSPERK 181
+ R + + K KE + E Q +++ EK ++K D +++ ++
Sbjct: 290 REKDKERGKNKDKDREKEKDHEKERDKEKEKEQDKDKEREKDRSKETDEKRKKE---KKS 346
Query: 182 DDPP----SNTRKRPAFRE-KKIQGDSGDANPAVS-TERVKASHTDHPPERNERKEERSG 235
PP ++ R R RE ++ + S +P S T + K+S + P RN+++++R
Sbjct: 347 RTPPRSYNASRRSRSTSRERRRRRSRSSSRSPRTSKTVKRKSSRSPSPRGRNKKEKKREK 406
Query: 236 NPRHL-ERHEKQIAGDRAPNRSEGRRDG 262
H+ +R E++ + +S G RDG
Sbjct: 407 ERDHISDRRERE--RSTSTKKSSGDRDG 432
Score = 48.1 bits (113), Expect = 3e-05
Identities = 47/233 (20%), Positives = 95/233 (40%), Gaps = 14/233 (6%)
Query: 94 KSNDHQEPPKHSAQPPRSRSYYQ-HAERGNTEQVGRSAGRREAGGKAFAQSKENSERVET 152
KSN+ + S +SRS + H+ R ++ RS + + + + S +
Sbjct: 186 KSNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKKR 245
Query: 153 SQSREQRDEKSQAKLDDNLHRRDGSPERKDDPPSNTRKRPAFREKKIQGDSGDANPAVST 212
S+SRE+R +S+++ D R+D + K+ R++ REK + D +
Sbjct: 246 SKSRERRKSRSRSRSRDK--RKDTREKVKERVKEKEREKEREREKDREKDKERGK---NK 300
Query: 213 ERVKASHTDHPPERNERKEERSGNPRHLERHEKQIAGDRAPNRSEGRRDGFSSRARYGGS 272
++ + DH ER++ KE+ + E+ DR+ E R+ SR
Sbjct: 301 DKDREKEKDHEKERDKEKEKEQDKDKEREK-------DRSKETDEKRKKEKKSRTPPRSY 353
Query: 273 GGNNNDRGRDKFNARQGYHPIKTRTEKWKHDLFQEADNDPVPKNEDDQIAKLE 325
+ R + R+ +R+ + + +++ P P+ + + K E
Sbjct: 354 NASRRSRSTSRERRRRRSRS-SSRSPRTSKTVKRKSSRSPSPRGRNKKEKKRE 405
Score = 47.0 bits (110), Expect = 7e-05
Identities = 71/348 (20%), Positives = 120/348 (34%), Gaps = 44/348 (12%)
Query: 5 DSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERER------GSERGRDRDRVTTN 58
D K+ HS P+ + ++ E R RE + E G+ +R
Sbjct: 135 DRPLKINHSNNAIVKPPEMTPQAAAKELEEVMKRVREAQSFISAAIEPESGKSNER---- 190
Query: 59 GGGGAGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHA 118
GG R + HS+++ K S Q R RS H
Sbjct: 191 ----KGGRSRSHTRSKSRSSSKSHSRRKR---SQSKHRSRSHNRSRSRQKDRRRSKSPHK 243
Query: 119 ERGNTEQVGRSAGRREAGGKAFAQSKENSERVETSQSREQRD---------------EKS 163
+R + + +S R + K ++ ERV+ + ++R+ +K
Sbjct: 244 KRSKSRERRKSRSRSRSRDKRKDTREKVKERVKEKEREKEREREKDREKDKERGKNKDKD 303
Query: 164 QAKLDDNLHRRDGSPERKDDPPSNTRK-RPAFREKKIQGDSGDANPAVSTERVKASHTDH 222
+ K D+ RD E++ D K R ++K + + P S + S +
Sbjct: 304 REKEKDHEKERDKEKEKEQDKDKEREKDRSKETDEKRKKEKKSRTPPRSYNASRRSRSTS 363
Query: 223 PPERNERKEERSGNPR---HLERHEKQIAGDRAPNRSEGR----RDGFSSRARYGGSGGN 275
R R S +PR ++R + R N+ E + RD S R S
Sbjct: 364 RERRRRRSRSSSRSPRTSKTVKRKSSRSPSPRGRNKKEKKREKERDHISDRRERERSTST 423
Query: 276 NNDRG-RD-KFNARQGYHPIKTRTEKWKHD--LFQEADNDPVPKNEDD 319
G RD K + P+K + + D + + AD P+ ED+
Sbjct: 424 KKSSGDRDGKEKVEKSTTPVKEKEHSKESDATVSKAADEKGSPRTEDE 471
>SFRF_HUMAN (O95104) Splicing factor, arginine/serine-rich 15
(CTD-binding SR-like protein RA4) (Fragment)
Length = 1157
Score = 56.2 bits (134), Expect = 1e-07
Identities = 46/179 (25%), Positives = 66/179 (36%), Gaps = 21/179 (11%)
Query: 60 GGGAGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAE 119
GG G P DRD R PP +Q A + Q+ P S QPP ++ Q
Sbjct: 935 GGPGPGPGGPEDRDGRQQPPQQPQQQPQPQAPQQPQQQQQQQPPPSQQPPPTQQQPQQFR 994
Query: 120 RGNTEQVGRSAGRREAGGKAFA--------------QSKENSERVETSQSREQRDEKSQA 165
N +Q + G ++F ++NS R R D
Sbjct: 995 NDNRQQFNSGRDQERFGRRSFGNRVENDRERYGNRNDDRDNSNRDRREWGRRSPDRDRHR 1054
Query: 166 KLDDNLHRRDGSPERKDDPPSNTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDHPP 224
L++ R G +R+ D +R R + REK + G P V T+R + T PP
Sbjct: 1055 DLEERNRRSSGHRDRERD----SRDRESRREK--EEARGKEKPEV-TDRAGGNKTVEPP 1106
Score = 35.8 bits (81), Expect = 0.15
Identities = 25/120 (20%), Positives = 52/120 (42%), Gaps = 9/120 (7%)
Query: 18 EPSPKRYRRDGKQDRERDRDRDR--ERERGSERGRDRDRVTTNGGGGAGGDQNPTDRDQR 75
+ P+++R D +Q RD++R R G+ DR+R G D++ ++RD+R
Sbjct: 987 QQQPQQFRNDNRQQFNSGRDQERFGRRSFGNRVENDRERY-----GNRNDDRDNSNRDRR 1041
Query: 76 --NLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGRR 133
P + + +++S+ H++ + S R + + E R+ G +
Sbjct: 1042 EWGRRSPDRDRHRDLEERNRRSSGHRDRERDSRDRESRREKEEARGKEKPEVTDRAGGNK 1101
Score = 30.4 bits (67), Expect = 6.4
Identities = 27/104 (25%), Positives = 40/104 (37%), Gaps = 3/104 (2%)
Query: 2 SHRDSDSKLRHSKFDR-EPSPKRY--RRDGKQDRERDRDRDRERERGSERGRDRDRVTTN 58
S RD + R S +R E +RY R D + + RDR R +R RD +
Sbjct: 1003 SGRDQERFGRRSFGNRVENDRERYGNRNDDRDNSNRDRREWGRRSPDRDRHRDLEERNRR 1062
Query: 59 GGGGAGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPP 102
G +++ DR+ R K++ N EPP
Sbjct: 1063 SSGHRDRERDSRDRESRREKEEARGKEKPEVTDRAGGNKTVEPP 1106
>CYL2_BOVIN (Q28092) Cylicin II (Multiple-band polypeptide II)
Length = 488
Score = 56.2 bits (134), Expect = 1e-07
Identities = 69/343 (20%), Positives = 134/343 (38%), Gaps = 46/343 (13%)
Query: 8 SKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRER---ERGSER---GRDRDRVTTNGGG 61
SK + K D + K+ R+D K+ +E + + E+ E+G+++ G + + T + G
Sbjct: 148 SKAKEEKPDEKKDLKKERKDSKKGKESATESEDEKAGAEKGAKKDRKGSKKGKETPSDSG 207
Query: 62 GAGGDQNPTDRDQRNLPPPPHSKQESVG-AGDKKSNDHQEPPKHSAQPPRSRSYYQHAER 120
GD + + S ES G GD K +D + K ++ + + E+
Sbjct: 208 SEKGDAKKDSKKSKKDSKGKESATESEGEKGDAKKDD--KKGKKGSKKGKESATESEGEK 265
Query: 121 GNTEQVGRSAGRREAGGKAFAQSKENSE--------------RVETSQSREQRDEKSQAK 166
G+ ++ + + GK A E + + + E EK AK
Sbjct: 266 GDAKKDDKKGKKGSKKGKESATESEGEKGDAKKDDKKGKKGSKKGKESATESEGEKGDAK 325
Query: 167 LDDNLHRRDGSPERKDDPPSNTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDHPPER 226
DD ++ ++ S K A ++ K +G G S + + D +
Sbjct: 326 KDDKKGKKGSKKGKESATESEGEKGDAKKDDK-KGKKGSKKGKESDSKAEGDKGD---AK 381
Query: 227 NERKEERSGNPRHLERHEKQIAGDRAPNRSEG-RRDGFSSRA--RYGGSGGNNNDRGRDK 283
+ K+++ G+ + G + SEG ++D +A + G D +DK
Sbjct: 382 KDDKKDKKGSKK----------GKESATESEGEKKDSKKDKAGKKDPTKAGEKGDESKDK 431
Query: 284 FNARQGYHPIKTRTEKWKHDLFQEADNDPVPKNEDDQIAKLEA 326
+A+ K ++K K D + + + PK+ + AK +A
Sbjct: 432 KDAK------KKDSKKEKKDEKKPGEAESEPKDSAKKDAKKDA 468
Score = 44.7 bits (104), Expect = 3e-04
Identities = 49/261 (18%), Positives = 102/261 (38%), Gaps = 34/261 (13%)
Query: 5 DSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGAG 64
DS S+ +K D + S K + GK+ + ++ ++G+ + +
Sbjct: 205 DSGSEKGDAKKDSKKSKKDSK--GKESATESEGEKGDAKKDDKKGKKGSKKGKESATESE 262
Query: 65 GDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTE 124
G++ +D + +ES + + D ++ K + + + + TE
Sbjct: 263 GEKGDAKKDDKKGKKGSKKGKESATESEGEKGDAKKDDK------KGKKGSKKGKESATE 316
Query: 125 QVGRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRRDGSPERKDDP 184
G ++ K SK+ E + E EK AK DD ++ GS + K+
Sbjct: 317 SEGEKGDAKKDDKKGKKGSKKGKE-----SATESEGEKGDAKKDDKKGKK-GSKKGKES- 369
Query: 185 PSNTRKRPAFREKKIQGDSGDA-----NPAVSTERVKASHTDHPPERNERKEERSGNPRH 239
+ K +GD GDA +++ K S T+ E+ + K++++G
Sbjct: 370 -----------DSKAEGDKGDAKKDDKKDKKGSKKGKESATESEGEKKDSKKDKAGKKDP 418
Query: 240 LERHEKQIAGDRAPNRSEGRR 260
+ EK GD + ++ + ++
Sbjct: 419 TKAGEK---GDESKDKKDAKK 436
Score = 36.6 bits (83), Expect = 0.089
Identities = 40/213 (18%), Positives = 87/213 (40%), Gaps = 25/213 (11%)
Query: 4 RDSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRER----------ERGSERGRDRD 53
++S ++ K D + K+ ++ K+ +E + + E+ ++GS++G++
Sbjct: 255 KESATESEGEKGDAKKDDKKGKKGSKKGKESATESEGEKGDAKKDDKKGKKGSKKGKES- 313
Query: 54 RVTTNGGGGAGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRS 113
T G G + + ++ S ES G D ++ K S + S S
Sbjct: 314 --ATESEGEKGDAKKDDKKGKKGSKKGKESATESEGEKGDAKKDDKKGKKGSKKGKESDS 371
Query: 114 YYQHAERGNTEQVGRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHR 173
+ G+ + + + G K +S SE + +++ +K K + +
Sbjct: 372 KAE----GDKGDAKKDDKKDKKGSKKGKESATESEGEKKDSKKDKAGKKDPTKAGE---K 424
Query: 174 RDGSPERKDDPPSNTRKRPAFREKKIQGDSGDA 206
D S ++KD +K+ + +EKK + G+A
Sbjct: 425 GDESKDKKD-----AKKKDSKKEKKDEKKPGEA 452
Score = 31.6 bits (70), Expect = 2.9
Identities = 28/152 (18%), Positives = 61/152 (39%), Gaps = 12/152 (7%)
Query: 142 QSKENSER----VETSQSREQRDEKSQAKLDDNLHRRDGSPERKDDPPSNTRKRPAFREK 197
+SKE+ ++ E+ S+E+ + S+AK + ++D ERKD + ++
Sbjct: 123 KSKEDKDKSDSEAESIVSKEKPRKLSKAKEEKPDEKKDLKKERKDSKKGKESATES-EDE 181
Query: 198 KIQGDSGDANPAVSTERVKASHTDHPPERNERKEERSGNPRHLERHEKQIAGDRAPNRSE 257
K + G +++ K + +D E+ + K++ ++ +K G + SE
Sbjct: 182 KAGAEKGAKKDRKGSKKGKETPSDSGSEKGDAKKDS-------KKSKKDSKGKESATESE 234
Query: 258 GRRDGFSSRARYGGSGGNNNDRGRDKFNARQG 289
G + + G G + +G
Sbjct: 235 GEKGDAKKDDKKGKKGSKKGKESATESEGEKG 266
>SFR4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4
(Pre-mRNA splicing factor SRP75) (SRP001LB)
Length = 494
Score = 55.5 bits (132), Expect = 2e-07
Identities = 51/271 (18%), Positives = 100/271 (36%), Gaps = 14/271 (5%)
Query: 2 SHRDSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRD----RVTT 57
S S S+ R R S R +++ + +++ R R G R + +D ++
Sbjct: 220 SRSRSGSRSRSKSRSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQN 279
Query: 58 NGGGGAGGDQNPT-------DRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPR 110
N G ++P+ R + K+ SV G + ++ S
Sbjct: 280 NDNVGKPKSRSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGG 339
Query: 111 SRSYYQHAERGNTEQVGRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDN 170
SRS + + ++ GR R E+ ++ ++SK R S+ + + K +D
Sbjct: 340 SRSRSRSRSKSKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDT 399
Query: 171 LHRRDGSPERKDDPPSNTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDHPPE--RNE 228
+ SP R K + +++ +G+S +A T S++ P
Sbjct: 400 DRSQSRSPSRSVSKEREHAKSES-SQREGRGESENAGTNQETRSRSRSNSKSKPNLPSES 458
Query: 229 RKEERSGNPRHLERHEKQIAGDRAPNRSEGR 259
R +S + + + R+P+RS R
Sbjct: 459 RSRSKSASKTRSRSKSRSRSASRSPSRSRSR 489
Score = 48.9 bits (115), Expect = 2e-05
Identities = 56/239 (23%), Positives = 91/239 (37%), Gaps = 19/239 (7%)
Query: 82 HSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGRRE-----AG 136
HS+ S +KS K S RSRS R + +S R + +
Sbjct: 191 HSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRSKKEKSRSP 250
Query: 137 GKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHR-RDGSPER---KDDPPSNTRKRP 192
K ++S+ +S S+S++Q +EK Q +DN+ + + SP R K S +++R
Sbjct: 251 SKEKSRSRSHSAGKSRSKSKDQAEEKIQN--NDNVGKPKSRSPSRHKSKSKSRSRSQERR 308
Query: 193 AFREKKIQGDSG-----DANPAVSTERVKASHTDHPPERNERKEERSGNPRHLERHEKQI 247
EK+ G + S R K R++ K++R G R E +
Sbjct: 309 VEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKSKDKRKGRKRSREESRSR- 367
Query: 248 AGDRAPNRSEGRRDGFSSRARYGGSGGNNNDRGRDKFNARQGYHPIKTRTEKWKHDLFQ 306
R+ ++SE R S R GS D+ +R + E K + Q
Sbjct: 368 --SRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSVSKEREHAKSESSQ 424
Score = 46.6 bits (109), Expect = 9e-05
Identities = 42/172 (24%), Positives = 65/172 (37%), Gaps = 11/172 (6%)
Query: 2 SHRDSDSKLRHSKFDREPSPKRY-----RRDGKQDRERDRDRDRER---ERGSERGRDRD 53
S R S S+ R R S R R+ K+ RE R R R R ER +RG RD
Sbjct: 326 SLRQSRSRSRSKGGSRSRSRSRSKSKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRD 385
Query: 54 RVTTNGGGGAGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRS 113
+ G + TDR Q P SK+ + + + +++ +RS
Sbjct: 386 ---SKAGSSKKKKKEDTDRSQSRSPSRSVSKEREHAKSESSQREGRGESENAGTNQETRS 442
Query: 114 YYQHAERGNTEQVGRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQA 165
+ + S R ++ K ++SK S S SR + S++
Sbjct: 443 RSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRSRSRSHSRS 494
Score = 42.7 bits (99), Expect = 0.001
Identities = 52/234 (22%), Positives = 90/234 (38%), Gaps = 19/234 (8%)
Query: 91 GDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGRREAGGKAFAQSKENSERV 150
G ++ + HS RSR H+ + + RS + + K+ ++S+ S
Sbjct: 178 GSRRRRSYSRSRSHSRSRSRSR----HSRKSRS----RSGSSKSSHSKSRSRSRSGSRSR 229
Query: 151 ETSQSREQRDEKSQAKLDDNLHRRDGSPERKDDPPSNTRKRPAFREKKIQGDSGDANP-- 208
S+SR Q +S+ K ++ S R + K E+KIQ + P
Sbjct: 230 SKSRSRSQSRSRSK-KEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKS 288
Query: 209 -AVSTERVKASHTDHPPERNERKEERSGNPRHLERHEKQIAGDRAPNRSEGRRDGFSSRA 267
+ S + K+ ER +EE+ G+ EK + R+ +RS+G G SR+
Sbjct: 289 RSPSRHKSKSKSRSRSQERRV-EEEKRGSVSRGRSQEKSLRQSRSRSRSKG---GSRSRS 344
Query: 268 RYGGSGGN---NNDRGRDKFNARQGYHPIKTRTEKWKHDLFQEADNDPVPKNED 318
R + R R++ +R R+ K +A + K ED
Sbjct: 345 RSRSKSKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKED 398
>SSRP_CAEEL (P41848) Probable structure-specific recognition protein
1 (SSRP1) (Recombination signal sequence recognition
protein)
Length = 697
Score = 54.7 bits (130), Expect = 3e-07
Identities = 53/254 (20%), Positives = 104/254 (40%), Gaps = 21/254 (8%)
Query: 5 DSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGAG 64
DSD +D + K+ + D + + D E + GSE+ + G G
Sbjct: 461 DSDDDSTDEDYDLDKDIKKKKEDKESSEGTGSEPDDEYDSGSEQD--------SSGTGES 512
Query: 65 GDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTE 124
+ D + P K+E +KK + K P R+ S Y +
Sbjct: 513 EPDSEQDVPSKRRKGEPKEKREKKEKREKKEGKKGKKDKDPNAPKRATSAYMQWFLASRN 572
Query: 125 QVGRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRRDGSPERKDDP 184
++ +E G +K+ + +T S +++ + +A+ D + + ++ RK+ P
Sbjct: 573 EL------KEDGDSVADVAKKGGAKWKTMSSDDKKKWEEKAEEDKSRYEKEMKEYRKNGP 626
Query: 185 PSNTRKRPAFR-EKKIQGDSGDANPAVSTERVKASHTDHPPERNERKEERSGNPRHLERH 243
PS++ K + + KK G S ++ A+S E + S +D + +K+E+ P+ E
Sbjct: 627 PSSSSKPSSSKTSKKSSGPS--SSKAISKEYI--SDSDDSDDEEPKKKEKKAAPK--EES 680
Query: 244 EKQIAGDRAPNRSE 257
E+ G + S+
Sbjct: 681 EESNNGSDGSDESD 694
>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1
snRNP 70 kDa) (snRNP70) (U1-70K)
Length = 427
Score = 54.7 bits (130), Expect = 3e-07
Identities = 42/143 (29%), Positives = 66/143 (45%), Gaps = 15/143 (10%)
Query: 17 REPSPKRYRRDGKQDRERD--RDRDRERERGSERGRDRDRVTTNGGGGAGGDQNPTDRDQ 74
RE R R G +DR+RD RDRDR R+RG RDRDR G + DR +
Sbjct: 295 REDKHHRDRDQGGRDRDRDSRRDRDRTRDRGDRDRRDRDR-----GRDRTSRDHDRDRSR 349
Query: 75 RNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGRRE 134
+ + E G G + D ++ +P +R YY+ ++G+T++ + E
Sbjct: 350 KKERDYEGGEYEHEGGGRSRERD----AEYRGEPEETRGYYED-DQGDTDRYSHRYDKME 404
Query: 135 AGGKAFAQSKENSERVETSQSRE 157
+ + + S+R S+SRE
Sbjct: 405 EDDFRYEREYKRSKR---SESRE 424
Score = 40.8 bits (94), Expect = 0.005
Identities = 50/221 (22%), Positives = 86/221 (38%), Gaps = 18/221 (8%)
Query: 27 DGKQ---DRERDRDRDRERERGSERGRDRDRVTTNGGGGAGGDQNPTDRDQRNLPP--PP 81
DG++ D ER R R R G RV GG G+Q P R ++ P P
Sbjct: 205 DGRRVLVDVERGRTVPNWRPRRLGGGLGTSRV--GGGEEIVGEQQPQGRTSQSEEPSRPR 262
Query: 82 HSKQESVGAGDKKSND----HQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGRREAGG 137
+++S G ++ H++P + S PR +++ ++G ++ S R+
Sbjct: 263 EEREKSREKGKERERSRELSHEQPRERSRDRPREDKHHRDRDQGGRDRDRDSRRDRDRTR 322
Query: 138 KAFAQSKENSERVETSQSREQRDEKSQAKLDD----NLHRRDGSPERKDDPPSNTRKRPA 193
+ + + +R SR+ ++S+ K D G R+ D + R P
Sbjct: 323 DRGDRDRRDRDRGRDRTSRDHDRDRSRKKERDYEGGEYEHEGGGRSRERD--AEYRGEPE 380
Query: 194 FREKKIQGDSGDANPAVSTERVKASHTDHPPERNERKEERS 234
+ D GD + S K D ER ++ +RS
Sbjct: 381 ETRGYYEDDQGDTD-RYSHRYDKMEEDDFRYEREYKRSKRS 420
Score = 32.3 bits (72), Expect = 1.7
Identities = 35/167 (20%), Positives = 63/167 (36%), Gaps = 11/167 (6%)
Query: 18 EPSPKRYRRDGKQDRERDRDRDRERERGSERGRDR----DRVTTNGGGGAGGDQNPTDRD 73
E P+ ++ +R++ RE+G ER R R ++ D++ DRD
Sbjct: 245 EQQPQGRTSQSEEPSRPREEREKSREKGKERERSRELSHEQPRERSRDRPREDKHHRDRD 304
Query: 74 QRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQH-AERGNTEQVGRSAGR 132
Q S+++ D+ D ++ + R R+ H +R ++ G
Sbjct: 305 QGGRDRDRDSRRDRDRTRDRGDRDRRDRDR-----GRDRTSRDHDRDRSRKKERDYEGGE 359
Query: 133 REAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRRDGSPE 179
E G ++ ++ R E ++R E Q D HR D E
Sbjct: 360 YEHEGGGRSRERDAEYRGEPEETRGYY-EDDQGDTDRYSHRYDKMEE 405
>CBX8_HUMAN (Q9HC52) Chromobox protein homolog 8 (Polycomb 3
homolog) (Pc3) (HPC3) (Rectachrome 1)
Length = 389
Score = 54.3 bits (129), Expect = 4e-07
Identities = 42/132 (31%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 17 REPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTT------NGGGGAGGDQNPT 70
R +P+ RD +DRERDR+R+RERER ER R+R+R T+ + G + + P
Sbjct: 143 RAEAPRDRDRDRDRDRERDRERERERERERERERERERGTSRVDDKPSSPGDSSKKRGPK 202
Query: 71 DRDQRNLPPPPHSKQESVGAGD-KKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVG-- 127
R + P + S G G+ K + P + + P S Q A R +++ V
Sbjct: 203 PRKELPDPSQRPLGEPSAGLGEYLKGRKLDDTPSGAGKFPAGHSVIQLARRQDSDLVQCG 262
Query: 128 -RSAGRREAGGK 138
S EA GK
Sbjct: 263 VTSPSSAEATGK 274
>HIR3_HUMAN (Q9BW71) HIRA-interacting protein 3
Length = 556
Score = 53.5 bits (127), Expect = 7e-07
Identities = 61/289 (21%), Positives = 117/289 (40%), Gaps = 51/289 (17%)
Query: 17 REPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGAGGDQNPTDRDQRN 76
+E +P+R + ++ + +R RD +RG E + ++ G + T +
Sbjct: 128 KEENPRRASKAVEESSDEERQRDLPAQRGEESSEEEEK----------GYKGKTRK---- 173
Query: 77 LPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGRREA- 135
K Q P K S ++R + +E E V R+A + E
Sbjct: 174 ----------------KPVVKKQAPGKASVSRKQAR---EESEESEAEPVQRTAKKVEGN 214
Query: 136 -GGKAFAQSKENSERVETSQSREQRDEK-SQAKLDDNLHRRDGSPERKDDPPSNTRKRPA 193
G K+ +S++ SE +Q +EQR+E+ + + +++ + D P + SN R++ A
Sbjct: 215 KGTKSLKESEQESEEEILAQKKEQREEEVEEEEKEEDEEKGDWKPRTR----SNGRRKSA 270
Query: 194 FREKKIQGDS------GDANPAVSTERVKASHTDHPPERNERKEERSGNPRHLERHEKQI 247
E+ + S GD++ + +S D +R E +R R + K++
Sbjct: 271 REERSCKQKSQAKRLLGDSDSEEEQKEAASSGDDSGRDR-EPPVQRKSEDRTQLKGGKRL 329
Query: 248 AGDRAPNRSEGRRD----GFSSRARYGGSGGNNNDRGRDKFNARQGYHP 292
+G G+ + G AR G + G +D R+ ++ G P
Sbjct: 330 SGSSEDEEDSGKGEPTAKGSRKMARLGSTSGEESDLEREVSDSEAGGGP 378
>SFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold
attachment factor B1) (SAF-B) (HSP27 estrogen response
element-TATA box-binding protein) (HSP27
ERE-TATA-binding protein)
Length = 915
Score = 53.1 bits (126), Expect = 9e-07
Identities = 62/297 (20%), Positives = 116/297 (38%), Gaps = 28/297 (9%)
Query: 6 SDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGAGG 65
S K ++ ++ S KR DGK+++ + DR +R + R D + G G
Sbjct: 478 SVEKAKNEPVGKKTSDKR-DSDGKKEKSSNSDRSTNLKRDDKCDRKDDAKKGDDGSGE-- 534
Query: 66 DQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQ 125
+DQ + P P + + +G + + K P S ER + Q
Sbjct: 535 ----KSKDQDDQKPGPSERSRATKSGSRGTERTVVMDKSKGVPVISVKTSGSKERASKSQ 590
Query: 126 VGRSAGRREAGGKAFAQSKE-----NSERVETSQSREQRDEKSQAKLDDNLHRRDGSPER 180
+SA R + +F + KE +SE + R +R+++ QA+ + R
Sbjct: 591 DRKSASREKRSVVSFDKVKEPRKSRDSESHSRVRERSEREQRMQAQWEREERER------ 644
Query: 181 KDDPPSNTRKRPAFREKKIQGDSGDANPAVSTERVKASH-TDHPPERNERKEERSGNPRH 239
R+R AF+ ++++ + + + ER+ H ER R+ E +
Sbjct: 645 ----LEIARERLAFQRQRLERERME-RERLERERMHVEHERRREQERIHREREELRRQQE 699
Query: 240 LERHEKQIAGDRAPNRSEGRRDGFSSRARYGGSGGNNNDRGRDKFNARQGYHPIKTR 296
L +++ R P + R D + A+ G ++R FN ++ +H R
Sbjct: 700 LRYEQERRPAVRRPYDLDRRDDAYWPEAKRAGL----DERYHSDFNRQERFHDFDHR 752
>Y553_HUMAN (Q9UKJ3) Hypothetical protein KIAA0553
Length = 1089
Score = 52.8 bits (125), Expect = 1e-06
Identities = 64/283 (22%), Positives = 101/283 (35%), Gaps = 29/283 (10%)
Query: 19 PSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGAGGDQNPTDRDQRNLP 78
P+P R RR + D +R R E GS +D GGG Q+ R +
Sbjct: 328 PAPPRRRRRAQDDSQR---RSLPAEEGSSGKKDE-------GGGGSSSQDHGGRKHKGEL 377
Query: 79 PPP-------------HSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQ 125
PP S + +GD+ S+D H P + + + G+
Sbjct: 378 PPSSCQRRAGTKRSSRSSHRSQPSSGDEDSDDASSHRLHQKSPSQYSEEEEEEDSGSEHS 437
Query: 126 VGRS-AGRREAGGKAFAQSKENSERVETSQSREQRDEK-SQAKLDDNLHRRDGSPERKDD 183
RS +GRR + ++ +S +S + QS R S D R +R D
Sbjct: 438 RSRSRSGRRHSSHRSSRRSYSSSSDASSDQSCYSRQRSYSDDSYSDYSDRSRRHSKRSHD 497
Query: 184 PPSNTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDHPPERN-ERKEERSGN---PRH 239
+ R K+ + S D + ++S + ++ H ER+ R RS + R
Sbjct: 498 SDDSDYASSKHRSKRHKYSSSDDDYSLSCSQSRSRSRSHTRERSRSRGRSRSSSCSRSRS 557
Query: 240 LERHEKQIAGDRAPNRSEGRRDGFSSRARYGGSGGNNNDRGRD 282
R A +RS R S+R+ SG G +
Sbjct: 558 KRRSRSTTAHSWQRSRSYSRDRSRSTRSPSQRSGSRKRSWGHE 600
Score = 43.9 bits (102), Expect = 6e-04
Identities = 49/207 (23%), Positives = 78/207 (37%), Gaps = 19/207 (9%)
Query: 84 KQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGRREAGGKAFAQS 143
K + +G+ K +P +P +S+ E G + V S GR +A A S
Sbjct: 178 KPKDIGSSSKDHLQGLDP----GEPNKSK------EVGGKKIVRSSGGRMDAPASGSACS 227
Query: 144 KENSERVETSQSREQRDE----KSQAKLDDNLHRRDGSPERKDDPPSNTRKRPAFREKKI 199
N + S E D S+ + HR E K + + EK
Sbjct: 228 GLNKQEPGGSHGSETEDTGRSLPSKKERSGKSHRHKKKKEHKKSSKHKRKPKADTEEKSS 287
Query: 200 QGDSGDANPAVSTERVKASHTDHPP--ERNERKEER-SGNPRHLERHEKQIAGDRAPNRS 256
+ +SG+ + + K + + P ER + E SG+P R + A D + RS
Sbjct: 288 KAESGEKSKKRKKRKRKKNKSSAPADSERGPKPEPPGSGSPAPPRRRRR--AQDDSQRRS 345
Query: 257 EGRRDGFSSRARYGGSGGNNNDRGRDK 283
+G S + GG G ++ D G K
Sbjct: 346 LPAEEGSSGKKDEGGGGSSSQDHGGRK 372
Score = 43.1 bits (100), Expect = 0.001
Identities = 62/275 (22%), Positives = 107/275 (38%), Gaps = 31/275 (11%)
Query: 61 GGAGGDQNPTDRDQRNLPPPPHSKQESVGAGD--KKSNDHQEPPKHSAQPPR-SRSYYQH 117
GG+ G + T+ R+LP SK+E G KK +H++ KH +P +
Sbjct: 235 GGSHGSE--TEDTGRSLP----SKKERSGKSHRHKKKKEHKKSSKHKRKPKADTEEKSSK 288
Query: 118 AERGNTEQVGRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRR--- 174
AE G + + R++ A A S E + E S + + + D+ RR
Sbjct: 289 AESGEKSKKRKKRKRKKNKSSAPADS-ERGPKPEPPGSGSPAPPRRRRRAQDDSQRRSLP 347
Query: 175 --DGSPERKDD--PPSNTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDHPPERNERK 230
+GS +KD+ S+++ + K S A + ++SH P +E
Sbjct: 348 AEEGSSGKKDEGGGGSSSQDHGGRKHKGELPPSSCQRRAGTKRSSRSSHRSQPSSGDEDS 407
Query: 231 EERSGNPRHL--------ERHEKQIAGDRAPNRS-EGRRDGF--SSRARYGGSGGNNNDR 279
++ S + H E E+ + + +RS GRR SSR Y S ++D+
Sbjct: 408 DDASSHRLHQKSPSQYSEEEEEEDSGSEHSRSRSRSGRRHSSHRSSRRSYSSSSDASSDQ 467
Query: 280 ---GRDKFNARQGYHPIKTRTEKWKHDLFQEADND 311
R + + Y R+ + D+D
Sbjct: 468 SCYSRQRSYSDDSYSDYSDRSRRHSKRSHDSDDSD 502
Score = 32.3 bits (72), Expect = 1.7
Identities = 57/211 (27%), Positives = 73/211 (34%), Gaps = 48/211 (22%)
Query: 5 DSD---SKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGG 61
DSD SK R + S Y Q R R R RER R RGR R +
Sbjct: 500 DSDYASSKHRSKRHKYSSSDDDYSLSCSQSRSRSRSHTRERSRS--RGRSRSSSCSR--- 554
Query: 62 GAGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERG 121
+ +R+ HS Q S +S + P + S R RS+ G
Sbjct: 555 --------SRSKRRSRSTTAHSWQRSRSYSRDRSRSTRSPSQRSGS--RKRSW------G 598
Query: 122 NTEQVGRSAGRREAGGKAFAQSKENSERVETSQS----REQRDEKSQAKLDDNLHRRDGS 177
+ R +GRR+ F +SK + SQS R R E K DD G
Sbjct: 599 HESPEERHSGRRD-----FIRSK-----IYRSQSPHYFRSGRGE-GPGKKDDG----RGD 643
Query: 178 PERKDDPPSNTRKRPAFREKKIQGDSGDANP 208
+ PPS R G GD +P
Sbjct: 644 DSKATGPPSQNSNIGTGR-----GSEGDCSP 669
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1
snRNP 70 kDa) (snRNP70) (U1-70K)
Length = 437
Score = 51.2 bits (121), Expect = 3e-06
Identities = 33/77 (42%), Positives = 40/77 (51%), Gaps = 14/77 (18%)
Query: 4 RDSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRER---ERGSERGRDRDRVTTNGG 60
RD D + R S R R+ ++DR+RDRDRDRE ERGSERGRD R GG
Sbjct: 348 RDRDRERRRSH--------RSERERRRDRDRDRDRDREHKRGERGSERGRDEAR---GGG 396
Query: 61 GGAGGDQNPTDRDQRNL 77
GG D R++
Sbjct: 397 GGQDNGLEGLGNDSRDM 413
Score = 48.9 bits (115), Expect = 2e-05
Identities = 43/151 (28%), Positives = 62/151 (40%), Gaps = 21/151 (13%)
Query: 4 RDSDSKLRHSKFD--REPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDR------V 55
RD + + R S+ R S R + + ++ RER +D+DR+R+R S R R+R R
Sbjct: 248 RDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKE 307
Query: 56 TTNGGGG------AGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPP 109
GGGG GD P D L P E G + D + H ++
Sbjct: 308 ELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKG----RDRDRERRRSHRSERE 363
Query: 110 RSRSYYQHAERGNTE---QVGRSAGRREAGG 137
R R + +R + G GR EA G
Sbjct: 364 RRRDRDRDRDRDREHKRGERGSERGRDEARG 394
Score = 43.1 bits (100), Expect = 0.001
Identities = 45/186 (24%), Positives = 77/186 (41%), Gaps = 22/186 (11%)
Query: 4 RDSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGA 63
R S L H DR+ +R R ++D+ER+R R R R+R R R RD+
Sbjct: 222 RPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDR-RRRSRSRDKEERRRSRER 280
Query: 64 GGDQNPTDRDQRNLPPPPHSKQESVGAGDKK--SNDHQEPPKHSAQPPRSRSYYQHAERG 121
D++ DR +R+ +++E + + D EP + PP + G
Sbjct: 281 SKDKD-RDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPP---------DDG 330
Query: 122 NTEQVGRSA--GRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRRD--GS 177
++G G E G + ++ R RE+R ++ + + D H+R GS
Sbjct: 331 PPGELGPDGPDGPEEKG-----RDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGS 385
Query: 178 PERKDD 183
+D+
Sbjct: 386 ERGRDE 391
Score = 42.4 bits (98), Expect = 0.002
Identities = 69/288 (23%), Positives = 106/288 (35%), Gaps = 58/288 (20%)
Query: 27 DGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGAGGDQNPTDRDQRNLPPPPHSKQE 86
DGK+ R D ER R + R R GGG G + D + R+
Sbjct: 165 DGKKIDGRRVLVDVERGRTVKGWRPRRL----GGGLGGTRRGGADVNIRH---------- 210
Query: 87 SVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGRREAGGKAFAQSKEN 146
+G ++ + E P S P R R + ER RS R + + ++S++
Sbjct: 211 ---SGRDDTSRYDERPGPSPLPHRDRDRDRERERRE-----RSRERDKERERRRSRSRDR 262
Query: 147 SERVETSQSREQRDEKSQAKLDDNLHRRDGSPERKDDPPSNTRKRPAFREKKIQGDSGDA 206
R + E+R + ++K D +R S R+ +R R+++++G GD
Sbjct: 263 RRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRE------RARRERERKEELRGGGGDM 316
Query: 207 NPAVSTERVKASHTDHPP------------------ERNERKEERSGNPRHLERHEKQIA 248
A +E A D PP +R R+ RS R +R +
Sbjct: 317 --AEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDR-- 372
Query: 249 GDRAPNRSEGRRDGFSSR--ARYGGSGGNNNDRG-----RDKFNARQG 289
DR G R R AR GG G +N G RD + +G
Sbjct: 373 -DRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSRDMYMESEG 419
Score = 33.1 bits (74), Expect = 0.98
Identities = 51/211 (24%), Positives = 83/211 (39%), Gaps = 32/211 (15%)
Query: 119 ERGNT------EQVGRSAGRREAGGKAFAQSKENSERVETSQSREQ----------RDEK 162
ERG T ++G G GG + +S R +TS+ E+ RD
Sbjct: 179 ERGRTVKGWRPRRLGGGLGGTRRGGADV--NIRHSGRDDTSRYDERPGPSPLPHRDRDRD 236
Query: 163 SQAKLDDNLHRRDGSPERKDDPPSNTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDH 222
+ + + RD ER+ + R+R R+K+ + S + + +R + S
Sbjct: 237 RERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSR 296
Query: 223 PPERNER--KEERSGNPRHLERHEKQIAGDRAPNRSEGRRDGFSSRARYGGSGGNNNDRG 280
R ER KEE G + E AGD P+ DG G G ++G
Sbjct: 297 ERARRERERKEELRGGGGDMA--EPSEAGDAPPD------DGPPGELGPDGPDG-PEEKG 347
Query: 281 RDKFNARQGYHPIKTRTEKWKHDLFQEADND 311
RD+ R+ H ++ E+ + D ++ D D
Sbjct: 348 RDRDRERRRSH--RSERER-RRDRDRDRDRD 375
>SFRG_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16
(Suppressor of white-apricot homolog 2) (Clk4
associating SR-related protein)
Length = 653
Score = 50.8 bits (120), Expect = 5e-06
Identities = 68/287 (23%), Positives = 109/287 (37%), Gaps = 23/287 (8%)
Query: 8 SKLRHSKFDREPSPKRYRRDGKQDRERDR--DRDRERERGSERGRDRDRVTTNGGGGAGG 65
S R S S + Y R G+ R R R R R R R R R R R ++GG G
Sbjct: 371 SSSRSSSRSSSRSRRGYYRSGRHARSRSRSWSRSRSRSRRYSRSRSRGRRHSDGGSRDGH 430
Query: 66 DQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQ 125
+ + + P S+ S +GD+ + P HS+ RS S+ R +
Sbjct: 431 RYSRSPARRGGYVPRRRSRSRS-RSGDRYKRGARGPRHHSSSHSRS-SWSLSPSR--SRS 486
Query: 126 VGRSAGRREAGGKAFAQSKENSERVETSQSREQ--RDEKSQA------KLDDNLHRRDGS 177
V RS R ++ ++ +QS S+ S RE+ R S A K + + G+
Sbjct: 487 VTRSGSRSQSRSRSRSQSHSQSQSHSPSPPREKLTRPAASPAVGEKLKKTEPAAGKETGA 546
Query: 178 PERKDDPPSNTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDHPPERNERKEERSGNP 237
+ K P + R +K + A + ++ H ER ER++E
Sbjct: 547 AKPKLTPQERLKLR---MQKALNRQFKADKKAAQEKMIQQEH-----ERQEREDELRAMA 598
Query: 238 RHLERHEKQ-IAGDRAPNRSEGRRDGFSSRARYGGSGGNNNDRGRDK 283
R + E++ +R + R S RY ++ R R +
Sbjct: 599 RKIRMKERERREKEREEWERQYSRQSRSPSPRYSREYSSSRRRSRSR 645
>PPIG_RAT (O55035) Peptidyl-prolyl cis-trans isomerase G (EC
5.2.1.8) (Peptidyl-prolyl isomerase G) (PPIase G)
(Rotamase G) (Cyclophilin G) (Matrin cyclophilin)
(Matrin-cyp)
Length = 752
Score = 50.8 bits (120), Expect = 5e-06
Identities = 62/273 (22%), Positives = 108/273 (38%), Gaps = 31/273 (11%)
Query: 21 PKRYRRDGKQDRERDRDRDRERERGSERGRDRDRV----TTNGGGGAGGDQNPTDRDQRN 76
P+RYR R R RDR R E ++ R ++G GD++ + + N
Sbjct: 336 PRRYRTPS---RSRSRDRFRRSETPPHWRQEMQRAQRMRVSSGERWIKGDKSELNEIKEN 392
Query: 77 LPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGRREAG 136
P K+ KK DH +H ++ P +R + + + + + R
Sbjct: 393 QRSPVRVKE-------KKITDH----RHMSESP-NRGIEKGGKVKDHKLESKERDIRRNS 440
Query: 137 GKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRRDGSPERKDDPPSNTRKRPAFRE 196
GK +K ++ S+SR + E+S++K D+ H R + + +E
Sbjct: 441 GKDDKYNKNKVKKRGKSKSRSKSKERSKSKERDSKHSRHEDKRVRSRSKERDHETTKEKE 500
Query: 197 KKIQGDSGDANPAVSTE---RVKASHTDHPPERNERKEERSGNPRHLER---HEKQIAGD 250
K++ D + S E +V++ +H +++ K+ R+ R ER K
Sbjct: 501 KQLDSKGKDQERSRSKENSKQVESKSNEHDHSKSKEKDRRA-QSRSRERDLTKSKHSYNS 559
Query: 251 RAPNRSEGRRDGFSSRARYGGSGGNNNDRGRDK 283
R RS R R+R S ++ DR R K
Sbjct: 560 RTRERSRSR-----DRSRRVRSRSHDRDRSRSK 587
Score = 47.8 bits (112), Expect = 4e-05
Identities = 69/299 (23%), Positives = 108/299 (36%), Gaps = 44/299 (14%)
Query: 2 SHRDSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERG-SERGRDRDR------ 54
S S SK R SK R KR R + +ERD + +E+E+ +G+D++R
Sbjct: 463 SKERSKSKERDSKHSRHED-KRVR---SRSKERDHETTKEKEKQLDSKGKDQERSRSKEN 518
Query: 55 ---VTTNGGGGAGGDQNPTDR------DQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHS 105
V + DR +R+L HS + + + S
Sbjct: 519 SKQVESKSNEHDHSKSKEKDRRAQSRSRERDLTKSKHSYNSRTRERSRSRDRSRRVRSRS 578
Query: 106 AQPPRSRSYYQHAERGNTEQVGRSAGR-REAGGKAFAQSKENSERVETSQSREQRDEKSQ 164
RSRS H R EQ R GR R + +S+ R SR E+SQ
Sbjct: 579 HDRDRSRSKEYHRYR---EQEYRRRGRSRSRDRRTPGRSRSKDRRRRRRDSRSSEREESQ 635
Query: 165 AKLDDNLHRRDGSPERKDDPPSNTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDHPP 224
+ R+ R D S+ RK + EK++ S D + + + R K + D P
Sbjct: 636 S--------RNKEKYRSQDSKSSHRKENSEGEKRMYSKSRD-HSSSNNNREKKADIDQSP 686
Query: 225 ERNERKEERSGNPRHLERHEKQIAGDRAPNRSEGRRDGFSSRARYGGSGGNNNDRGRDK 283
++ + + ++ R+P E ++ S G ND DK
Sbjct: 687 VSKTKQSSQDNEVKSSTLKNQEDEKTRSPVEKENQK-----------SKGQENDHVHDK 734
Score = 47.0 bits (110), Expect = 7e-05
Identities = 56/244 (22%), Positives = 94/244 (37%), Gaps = 25/244 (10%)
Query: 2 SHRDSDSKLRHSKFDREPSPKRYRRDGK-QDRERDRDRDRER----ERGSERGRDRDRVT 56
S +SK SK + K +D + Q R R+RD + + R ER R RDR
Sbjct: 513 SRSKENSKQVESKSNEHDHSKSKEKDRRAQSRSRERDLTKSKHSYNSRTRERSRSRDRSR 572
Query: 57 TNGGGGAGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQ 116
D++ + R + +QE G +S D + P RSRS +
Sbjct: 573 RVRSRSHDRDRSRSKEYHR------YREQEYRRRGRSRSRDRR-------TPGRSRSKDR 619
Query: 117 HAERGNTEQVGRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRRDG 176
R ++ R + K +Q ++S R E S+ ++ KS+ N + R+
Sbjct: 620 RRRRRDSRSSEREESQSRNKEKYRSQDSKSSHRKENSEGEKRMYSKSRDHSSSN-NNREK 678
Query: 177 SPERKDDPPSNTRKRPAFREKKI-----QGDSGDANPA-VSTERVKASHTDHPPERNERK 230
+ P S T++ E K Q D +P ++ K DH ++N++
Sbjct: 679 KADIDQSPVSKTKQSSQDNEVKSSTLKNQEDEKTRSPVEKENQKSKGQENDHVHDKNKKC 738
Query: 231 EERS 234
+ S
Sbjct: 739 DHES 742
Score = 46.2 bits (108), Expect = 1e-04
Identities = 70/325 (21%), Positives = 120/325 (36%), Gaps = 43/325 (13%)
Query: 8 SKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGAGGDQ 67
SK R +R S +R D K R D+ R R R ER + + G DQ
Sbjct: 457 SKSRSKSKERSKSKER---DSKHSRHEDK---RVRSRSKERDHETTKEKEKQLDSKGKDQ 510
Query: 68 NPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVG 127
R + N SKQ + KSN+H HS + R + R +
Sbjct: 511 E-RSRSKEN------SKQV-----ESKSNEHD----HSKSKEKDR---RAQSRSRERDLT 551
Query: 128 RSAGRREAGGKAFAQSKENSERVET-SQSREQRDEKSQAKLDDNLHRRDGSPERKD-DPP 185
+S + + ++S++ S RV + S R++ K + + +RR G +D P
Sbjct: 552 KSKHSYNSRTRERSRSRDRSRRVRSRSHDRDRSRSKEYHRYREQEYRRRGRSRSRDRRTP 611
Query: 186 SNTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDHPPERNERKEERSGNPRHLERHEK 245
+R + R ++ DS + S R K + + + RKE G R + K
Sbjct: 612 GRSRSKDRRRRRR---DSRSSEREESQSRNKEKYRSQDSKSSHRKENSEGEKR---MYSK 665
Query: 246 QIAGDRAPNRSEGRRDGFSSRARYGGSGGNNNDRGRDKFNARQG---YHPIKTRTEKWK- 301
+ N E + D S +N+ ++ P++ +K K
Sbjct: 666 SRDHSSSNNNREKKADIDQSPVSKTKQSSQDNEVKSSTLKNQEDEKTRSPVEKENQKSKG 725
Query: 302 ------HDLFQEADNDPVPKNEDDQ 320
HD ++ D++ P ++D+
Sbjct: 726 QENDHVHDKNKKCDHESSPGTDEDK 750
Score = 45.4 bits (106), Expect = 2e-04
Identities = 41/192 (21%), Positives = 83/192 (42%), Gaps = 14/192 (7%)
Query: 4 RDSDSKLRHSKFDREPS-PKRYRRDGKQDRERDRDRDRERER---GSERGRDRDRVTTNG 59
RD ++R DR+ S K Y R +Q+ R R R R R+R G R +DR R
Sbjct: 568 RDRSRRVRSRSHDRDRSRSKEYHRYREQEYRR-RGRSRSRDRRTPGRSRSKDRRR----- 621
Query: 60 GGGAGGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAE 119
D ++R++ + + + +K N E +S S S +
Sbjct: 622 ---RRRDSRSSEREESQSRNKEKYRSQDSKSSHRKENSEGEKRMYSKSRDHSSSNNNREK 678
Query: 120 RGNTEQVGRSAGRREA-GGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRRDGSP 178
+ + +Q S ++ + + + + +N E +T E+ ++KS+ + +D++H ++
Sbjct: 679 KADIDQSPVSKTKQSSQDNEVKSSTLKNQEDEKTRSPVEKENQKSKGQENDHVHDKNKKC 738
Query: 179 ERKDDPPSNTRK 190
+ + P ++ K
Sbjct: 739 DHESSPGTDEDK 750
Score = 31.2 bits (69), Expect = 3.7
Identities = 40/206 (19%), Positives = 81/206 (38%), Gaps = 28/206 (13%)
Query: 109 PRSRSYYQHAERGNTEQVGRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKLD 168
P+S+ + +R + S+ ++ + +QS +S ET+ + R K + + +
Sbjct: 179 PKSKVKKEEKKRHKSSS---SSSSSDSDSSSDSQSSSDSSDSETASEEKSRKRKKKHRKN 235
Query: 169 DNLHRRDGSPERKDDPPSNTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDHPPERNE 228
H+++ +K ++K P+ + + D+ DA P ST R + + PP
Sbjct: 236 SRKHKKEKKKRKK------SKKSPS---SESEADNVDAQPQ-STVRPE----EIPPIPEN 281
Query: 229 RKEERSGNPR--HLERHEKQIAGDRAPNRSEGRRDGFSSRARYGGSGGNNNDRGRDKFNA 286
R R P+ ER ++ +R N + + R SG RG ++
Sbjct: 282 RFLMRKSPPKADDKERKNRERERERECNPPNSQPASYQRRFLVTRSGRKIKGRGPRRY-- 339
Query: 287 RQGYHPIKTRTEKWKHDLFQEADNDP 312
+T + D F+ ++ P
Sbjct: 340 -------RTPSRSRSRDRFRRSETPP 358
>CYP1_BRUMA (Q27450) Peptidylprolyl isomerase 1 (EC 5.2.1.8)
(Peptidylprolyl cis-trans isomerase 1) (PPIase 1)
(Cyclophilin) (BmCYP-1)
Length = 843
Score = 50.4 bits (119), Expect = 6e-06
Identities = 67/292 (22%), Positives = 114/292 (38%), Gaps = 35/292 (11%)
Query: 4 RDSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGA 63
R SDSK K DR+ K DG++ R++ D +R+ S + D T
Sbjct: 571 RKSDSKEHRGKTDRKHRSKSIEEDGRRSTSREKLDDLKRKETSGQKSQADSEQT-----V 625
Query: 64 GGDQNPTDRDQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNT 123
N D + N + K + V + +K+ N+ E A+ +S Q
Sbjct: 626 EAKTNVVDSNSDNSKMSVNGKLKEVSSTNKE-NEVSEQKDLKAESTKSEEIKQQV----- 679
Query: 124 EQVGRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDNLHRRDGSPERKDD 183
R++ GG+ + K N E S+SR +R +S + + RR S +R+
Sbjct: 680 ----NEVSRKQKGGEKPKEHKRN----ERSRSRRRR-SRSNGRRRRSSSRRSRSRDRR-- 728
Query: 184 PPSNTRKRPAFREKKIQGDSGDANPA--------VSTERVKASHTDHPPERNERKEERSG 235
+R R ++ +G S P + ER + D +R R RS
Sbjct: 729 --HKSRSRSRGYVRRFEGWSRSRRPTRRELYDERMRRERERRRSFDRYSDR-RRTRSRSA 785
Query: 236 NPRHLERHEKQIAGDRAPNRSEGRRDGFSSRARYGGSGGNNNDRGRDKFNAR 287
R +RH ++ + R+P+ S + SS +R S ++ R ++R
Sbjct: 786 R-RDSDRHSRR-SRKRSPSSSSSSSESSSSDSRSTASSSASSKRSSSSDSSR 835
Score = 43.5 bits (101), Expect = 7e-04
Identities = 60/269 (22%), Positives = 101/269 (37%), Gaps = 34/269 (12%)
Query: 29 KQDRERDRDRDRERER-GSERGRDRDRVTTNGGGGAGGDQNPTDRDQRNLPPPPHSKQES 87
K E+ + + E+ G + GRD+ ++ D DR R H E
Sbjct: 497 KMAEEKTKQEAKMLEKTGDKEGRDQKTISE----AKQKDSAEKDRQHRE-----HKNDEL 547
Query: 88 VGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGRREAGGKAFAQSK-EN 146
+K + Q + + R +S + RG T++ RS E G ++ ++ K ++
Sbjct: 548 EKRAIEKQDKDQIVERDTGSKQRRKSDSKE-HRGKTDRKHRSKSIEEDGRRSTSREKLDD 606
Query: 147 SERVETSQSREQRDEKSQAK-----LDDNLHRRDGSPERKDDPPSNTRKRPAFREKKIQG 201
+R ETS + Q D + + +D N S K S+T K E+K
Sbjct: 607 LKRKETSGQKSQADSEQTVEAKTNVVDSNSDNSKMSVNGKLKEVSSTNKENEVSEQK--- 663
Query: 202 DSGDANPAVSTERVKASHTDHPPERNERKEERSGNPRHLERHEKQIAGDRAPNRSEGRRD 261
+ E K+ RK++ P+ +R+E+ R +RS GRR
Sbjct: 664 -------DLKAESTKSEEIKQQVNEVSRKQKGGEKPKEHKRNERS-RSRRRRSRSNGRRR 715
Query: 262 GFSSRARYGGSGGNNNDRGRDKFNARQGY 290
SSR + DR + +GY
Sbjct: 716 RSSSRR------SRSRDRRHKSRSRSRGY 738
>PR16_HUMAN (Q92620) Pre-mRNA splicing factor ATP-dependent RNA
helicase PRP16 (EC 3.6.1.-) (ATP-dependent RNA helicase
DHX38) (DEAH-box protein 38)
Length = 1227
Score = 50.1 bits (118), Expect = 8e-06
Identities = 60/263 (22%), Positives = 101/263 (37%), Gaps = 49/263 (18%)
Query: 26 RDGKQDRERDRDRDRERERGS-ERGRDRDRVTTNGGGGAGGDQNPTDRDQ---RNLPPPP 81
+D K+++ RDRD DR+R+R +R R R +GG +N + + ++ P
Sbjct: 152 KDWKKEKSRDRDYDRKRDRDERDRSRHSSRSERDGGSERSSRRNEPESPRHRPKDAATPS 211
Query: 82 HS--KQESVGAGDKKSNDHQEPP-------------------------KHSAQPPRSRSY 114
S ++E G G + + + P K+S P
Sbjct: 212 RSTWEEEDSGYGSSRRSQWESPSPTPSYRDSERSHRLSTRDRDRSVRGKYSDDTPLPTPS 271
Query: 115 YQHAE-------RGNTEQVGRSAGRREAGGKAFA-QSKENSERVETSQSREQRDEKSQAK 166
Y++ E G+T ++ R GRRE G + + ++E ++ E Q + RD +
Sbjct: 272 YKYNEWADDRRHLGSTPRLSRGRGRREEGEEGISFDTEEERQQWEDDQRQADRDWYMMDE 331
Query: 167 LDDNLHR------RDGSPERKDDPPSNTRKRPAFREKKIQGDSGDANPAVSTERVKASHT 220
D H D R+ +KR + + ++I D N T R+ S
Sbjct: 332 GYDEFHNPLAYSSEDYVRRREQHLHKQKQKRISAQRRQINED----NERWETNRMLTSGV 387
Query: 221 DHPPERNERKEERSGNPRHLERH 243
H E +E EE + HL H
Sbjct: 388 VHRLEVDEDFEEDNAAKVHLMVH 410
Score = 36.2 bits (82), Expect = 0.12
Identities = 65/302 (21%), Positives = 104/302 (33%), Gaps = 42/302 (13%)
Query: 20 SPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGGGGAGGDQNPTDRDQRNLPP 79
S KR R+ K D E + + E +D + GG G DR R+
Sbjct: 56 SLKRREREEKDDGEDKKKSKVSSYKDWEESKDDQKDAEEEGGDQAGQNIRKDRHYRSA-- 113
Query: 80 PPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGRREAGGKA 139
E P H S +++ + + R RRE G
Sbjct: 114 ------------------RVETPSHPGGV--SEEFWERSRQ-------RERERREHG--V 144
Query: 140 FAQSKENSE-RVETSQSREQRDEKSQAKLDDNLH----RRDGSPER--KDDPPSNTRKRP 192
+A SKE + + E S+ R+ ++ + + D + H RDG ER + + P + R RP
Sbjct: 145 YASSKEEKDWKKEKSRDRDYDRKRDRDERDRSRHSSRSERDGGSERSSRRNEPESPRHRP 204
Query: 193 --AFREKKIQGDSGDANPAVSTERVKASHTDHPPER-NERKEERSGNPRHLERHEKQIAG 249
A + + D+ S S + P R +ER S R K
Sbjct: 205 KDAATPSRSTWEEEDSGYGSSRRSQWESPSPTPSYRDSERSHRLSTRDRDRSVRGKYSDD 264
Query: 250 DRAPNRSEGRRDGFSSRARYGGSGGNNNDRGRDKFNARQGYHPIKTRTEKWKHDLFQEAD 309
P S + R G + + RGR + + ++W+ D ++AD
Sbjct: 265 TPLPTPSYKYNEWADDRRHLGSTPRLSRGRGRREEGEEGISFDTEEERQQWEDDQ-RQAD 323
Query: 310 ND 311
D
Sbjct: 324 RD 325
>YNE1_CAEEL (P30640) Hypothetical protein R08D7.1 in chromosome III
Length = 458
Score = 49.7 bits (117), Expect = 1e-05
Identities = 42/199 (21%), Positives = 81/199 (40%), Gaps = 17/199 (8%)
Query: 8 SKLRHSKFDREPSPKRYRRDGKQD----RERDRDRDRERERGSERGRDRDRVTTNGGGGA 63
S+ R+ + P P R R D +D R R D D R S + R+ N
Sbjct: 122 SRKRNDSDNSPPRPSRNRHDSDKDNSPPRRRRHDSDNSPPRPSRKIREESPSARNRRSPP 181
Query: 64 GGDQNPTDRDQRNLPPPPHSKQESVGA---------GDKKSNDHQEPPKHSAQPPRSRSY 114
++ D D N PP S+++S + ++ +D PP+ S + +
Sbjct: 182 RTRRDRHDSD--NSPPRNRSRRDSDNSPPRRRPSSPARRRKDDDLSPPRKSRKIEEPKKI 239
Query: 115 YQHAERGNTEQVGRSAGRREAGGKAFAQSKENSERVETSQSR--EQRDEKSQAKLDDNLH 172
+ +TE GR+ + +G ++ KE S+++ S+ E+ D + D ++
Sbjct: 240 KKEEPDSDTETSGRTLEGKRSGLQSARDLKEESDKLRAKNSKMFEEMDTSVSGRFADTVY 299
Query: 173 RRDGSPERKDDPPSNTRKR 191
R+ + ++ D + K+
Sbjct: 300 RQKQTKKKGKDSEEDQAKK 318
Score = 36.6 bits (83), Expect = 0.089
Identities = 41/184 (22%), Positives = 71/184 (38%), Gaps = 11/184 (5%)
Query: 73 DQRNLPPPPHSKQESVGAGDKKSNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGR 132
D N PP P K+ + + ++ PPR R +H + + R R
Sbjct: 113 DSDNSPPRPSRKRNDSDNSPPRPSRNRHDSDKDNSPPRRR---RHDSDNSPPRPSRKI-R 168
Query: 133 REAGGKAFAQSKENSERVETSQSREQRDEKSQAKLDDN-LHRRDGSP--ERKDDPPSNTR 189
E+ +S + R +S+ D++ RR SP RKDD S R
Sbjct: 169 EESPSARNRRSPPRTRRDRHDSDNSPPRNRSRRDSDNSPPRRRPSSPARRRKDDDLSPPR 228
Query: 190 KRPAFRE-KKIQGDSGDANPAVSTERVKASHTDHPPERNERKEE---RSGNPRHLERHEK 245
K E KKI+ + D++ S ++ + R+ ++E R+ N + E +
Sbjct: 229 KSRKIEEPKKIKKEEPDSDTETSGRTLEGKRSGLQSARDLKEESDKLRAKNSKMFEEMDT 288
Query: 246 QIAG 249
++G
Sbjct: 289 SVSG 292
Score = 36.2 bits (82), Expect = 0.12
Identities = 59/282 (20%), Positives = 106/282 (36%), Gaps = 46/282 (16%)
Query: 1 MSHRDSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRDRERERGSERGRDRDRVTTNGG 60
+S D + + K +++ + R ++D D + R+ GS+ R+ V
Sbjct: 12 LSPASGDIEKKKKKKNKDKNKPSGLRLIEEDAFLSVDAAKTRDIGSDEEREEIEVLKQSV 71
Query: 61 GGA----GGDQNPTDRDQ-RNLPPPPHSKQESVGAGDKKSNDHQE-PPKHSAQ------- 107
A G Q + D + + P P S S G ++ +D PP+ S +
Sbjct: 72 KKAKVVHGFKQTFAEVDAPKVIKPEPLSPDNSPPRGKRQRHDSDNSPPRPSRKRNDSDNS 131
Query: 108 PPRSRSYYQHAERGNTEQVGRSAGRREAGGKAFAQSKENSERVETSQSREQRDEKSQAKL 167
PPR +++ N+ R R ++ S++ E +S R+ +S +
Sbjct: 132 PPRPSRNRHDSDKDNSPPRRR---RHDSDNSPPRPSRKIRE-----ESPSARNRRSPPRT 183
Query: 168 DDNLHRRDGSP----ERKDDPPSNTRKRPAFREKKIQGDSGDANPAVSTERVKASHTDHP 223
+ H D SP R+D S R+RP+ ++ + D D
Sbjct: 184 RRDRHDSDNSPPRNRSRRDSDNSPPRRRPSSPARRRKDD------------------DLS 225
Query: 224 PERNERKEERSGNPRHLERHEKQIAGDRAPNRSEGRRDGFSS 265
P R RK E P+ +++ E + + EG+R G S
Sbjct: 226 PPRKSRKIEE---PKKIKKEEPDSDTETSGRTLEGKRSGLQS 264
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.307 0.128 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,036,042
Number of Sequences: 164201
Number of extensions: 2285960
Number of successful extensions: 12642
Number of sequences better than 10.0: 657
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 528
Number of HSP's that attempted gapping in prelim test: 8824
Number of HSP's gapped (non-prelim): 2233
length of query: 330
length of database: 59,974,054
effective HSP length: 111
effective length of query: 219
effective length of database: 41,747,743
effective search space: 9142755717
effective search space used: 9142755717
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 66 (30.0 bits)
Lotus: description of TM0218.18