BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0214.10
         (74 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

IF32_ARATH (Q38884) Eukaryotic translation initiation factor 3 s...    74  9e-14
IF32_MOUSE (Q9QZD9) Eukaryotic translation initiation factor 3 s...    55  3e-08
IF32_HUMAN (Q13347) Eukaryotic translation initiation factor 3 s...    55  3e-08
IF32_SCHPO (P79083) Eukaryotic translation initiation factor 3 3...    55  4e-08
IF32_DROME (O02195) Eukaryotic translation initiation factor 3 s...    54  6e-08
IF32_YEAST (P40217) Eukaryotic translation initiation factor 3 3...    49  3e-06
SYI_TREPA (O83466) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole...    27  7.3
RESA_PLAFN (P13831) Ring-infected erythrocyte surface antigen (F...    27  7.3
RESA_PLAFF (P13830) Ring-infected erythrocyte surface antigen pr...    27  7.3
YVDK_BACSU (O06993) Hypothetical glycosyl hydrolase yvdK (EC 3.2...    27  9.6

>IF32_ARATH (Q38884) Eukaryotic translation initiation factor 3
           subunit 2 (eIF-3 beta) (eIF3 p36) (eIF3i) (TGF-beta
           receptor interacting protein 1) (TRIP-1)
          Length = 328

 Score = 73.6 bits (179), Expect = 9e-14
 Identities = 40/71 (56%), Positives = 48/71 (67%), Gaps = 1/71 (1%)

Query: 2   VLRGGQVASAVSTTDHHAGNFEAKFYDMILQEEFRDVKGHSGLINVMAFIMEERPALSDP 61
           VL GGQ ASAV+TTDH AG FEAKFYD ILQEE   VKGH G IN +AF  + + + S  
Sbjct: 250 VLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDGK-SFSSG 308

Query: 62  VSDGHVLVQFY 72
             DG+V +  +
Sbjct: 309 GEDGYVRLHHF 319


>IF32_MOUSE (Q9QZD9) Eukaryotic translation initiation factor 3
           subunit 2 (eIF-3 beta) (eIF3 p36) (eIF3i) (TGF-beta
           receptor interacting protein 1) (TRIP-1)
          Length = 325

 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 2   VLRGGQVASAVSTTDHHAGNFEAKFYDMILQEEFRDVKGHSGLINVMAFIMEERPALSDP 61
           VL GGQ A  V+TT    G FEA+F+ +  +EEF  VKGH G IN +AF  + + + S  
Sbjct: 245 VLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPINSVAFHPDGK-SYSSG 303

Query: 62  VSDGHVLVQFY 72
             DG+V + ++
Sbjct: 304 GEDGYVRIHYF 314


>IF32_HUMAN (Q13347) Eukaryotic translation initiation factor 3
           subunit 2 (eIF-3 beta) (eIF3 p36) (eIF3i) (TGF-beta
           receptor interacting protein 1) (TRIP-1)
          Length = 325

 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 2   VLRGGQVASAVSTTDHHAGNFEAKFYDMILQEEFRDVKGHSGLINVMAFIMEERPALSDP 61
           VL GGQ A  V+TT    G FEA+F+ +  +EEF  VKGH G IN +AF  + + + S  
Sbjct: 245 VLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPINSVAFHPDGK-SYSSG 303

Query: 62  VSDGHVLVQFY 72
             DG+V + ++
Sbjct: 304 GEDGYVRIHYF 314


>IF32_SCHPO (P79083) Eukaryotic translation initiation factor 3 39
           kDa subunit (eIF3 p39) (Translation initiation factor
           eIF3, p39 subunit) (Suppressor of uncontrolled mitosis
           1)
          Length = 328

 Score = 54.7 bits (130), Expect = 4e-08
 Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 2   VLRGGQVASAVSTTDHHAGNFEAKFYDMILQEEFRDVKGHSGLINVMAFIMEERPALSDP 61
           +L GGQ A  V+TT    G FEA+FY  IL+EE   VKGH G IN +A +  +    +  
Sbjct: 248 ILGGGQEARDVTTTAARQGKFEARFYHAILEEELGRVKGHFGPINTIA-VHPKGTGYASG 306

Query: 62  VSDGHVLVQFY 72
             DG+V V F+
Sbjct: 307 GEDGYVRVHFF 317


>IF32_DROME (O02195) Eukaryotic translation initiation factor 3
           subunit 2 (eIF-3 beta) (eIF3i) (TRIP-1 homolog)
          Length = 326

 Score = 54.3 bits (129), Expect = 6e-08
 Identities = 31/71 (43%), Positives = 43/71 (59%), Gaps = 1/71 (1%)

Query: 2   VLRGGQVASAVSTTDHHAGNFEAKFYDMILQEEFRDVKGHSGLINVMAFIMEERPALSDP 61
           VL GGQ A  V+TT   AG F+++F+ +I +EEF  +KGH G IN +AF  + +   S  
Sbjct: 247 VLGGGQDAMEVTTTSTKAGKFDSRFFHLIYEEEFARLKGHFGPINSLAFHPDGKSYASGG 306

Query: 62  VSDGHVLVQFY 72
             DG V VQ +
Sbjct: 307 -EDGFVRVQTF 316


>IF32_YEAST (P40217) Eukaryotic translation initiation factor 3 39
           kDa subunit (eIF3 p39) (Translation initiation factor
           eIF3, p39 subunit)
          Length = 347

 Score = 48.5 bits (114), Expect = 3e-06
 Identities = 23/48 (47%), Positives = 31/48 (63%)

Query: 2   VLRGGQVASAVSTTDHHAGNFEAKFYDMILQEEFRDVKGHSGLINVMA 49
           +L GGQ A  V+TT  + G FEA+FY  I +EE   V+GH G +N +A
Sbjct: 253 ILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVA 300


>SYI_TREPA (O83466) Isoleucyl-tRNA synthetase (EC 6.1.1.5)
           (Isoleucine--tRNA ligase) (IleRS)
          Length = 1091

 Score = 27.3 bits (59), Expect = 7.3
 Identities = 15/51 (29%), Positives = 24/51 (46%)

Query: 18  HAGNFEAKFYDMILQEEFRDVKGHSGLINVMAFIMEERPALSDPVSDGHVL 68
           HA +FE  F    + E     +G    + ++A  + ERPA  + +  G VL
Sbjct: 569 HATDFERYFPAHFISEGLDQTRGWFYTLTILAVALFERPAFENCIVTGLVL 619


>RESA_PLAFN (P13831) Ring-infected erythrocyte surface antigen
           (Fragment)
          Length = 760

 Score = 27.3 bits (59), Expect = 7.3
 Identities = 12/46 (26%), Positives = 26/46 (56%)

Query: 26  FYDMILQEEFRDVKGHSGLINVMAFIMEERPALSDPVSDGHVLVQF 71
           FY +   E+F+D  G   ++ ++ F  E+R +++D  +    L++F
Sbjct: 388 FYLLSSLEKFKDFTGTPQIVTLLRFFFEKRLSMNDLENKSEHLLKF 433


>RESA_PLAFF (P13830) Ring-infected erythrocyte surface antigen
           precursor
          Length = 1073

 Score = 27.3 bits (59), Expect = 7.3
 Identities = 12/46 (26%), Positives = 26/46 (56%)

Query: 26  FYDMILQEEFRDVKGHSGLINVMAFIMEERPALSDPVSDGHVLVQF 71
           FY +   E+F+D  G   ++ ++ F  E+R +++D  +    L++F
Sbjct: 602 FYLLSSLEKFKDFTGTPQIVTLLRFFFEKRLSMNDLENKSEHLLKF 647


>YVDK_BACSU (O06993) Hypothetical glycosyl hydrolase yvdK (EC
           3.2.1.-)
          Length = 757

 Score = 26.9 bits (58), Expect = 9.6
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 1   EVLRGGQVASAVSTTDHHAGNFEAKFYDMILQEEFRDVKGHSG 43
           E L G  V + V   D +  N ++ + +   QEE +    HSG
Sbjct: 158 ECLTGDAVITLVPYLDGNVANEDSNYQEQFWQEEAKGADSHSG 200


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.320    0.137    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,415,529
Number of Sequences: 164201
Number of extensions: 258568
Number of successful extensions: 511
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 501
Number of HSP's gapped (non-prelim): 10
length of query: 74
length of database: 59,974,054
effective HSP length: 50
effective length of query: 24
effective length of database: 51,764,004
effective search space: 1242336096
effective search space used: 1242336096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)