BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0212.11
         (511 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran...    87  1e-16
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain...    55  6e-07
RPOC_LACPL (Q88XZ2) DNA-directed RNA polymerase beta' chain (EC ...    31  8.7

>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
           transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
           Reverse transcriptase (EC 2.7.7.49); Endonuclease]
          Length = 1328

 Score = 87.0 bits (214), Expect = 1e-16
 Identities = 46/101 (45%), Positives = 68/101 (66%), Gaps = 4/101 (3%)

Query: 7   MDVMKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSLRYKAILMVEDFRHG 66
           M  M+ EM+S   N ++ LV+LPKGK+ L+ KW+  +K + +   +RYKA L+V+ F   
Sbjct: 827 MKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQK 886

Query: 67  KSVDSNE----MVKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
           K +D +E    +VKM+ I  +LSL A+LDLEV+Q+DVK AF
Sbjct: 887 KGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAF 927



 Score = 85.1 bits (209), Expect = 4e-16
 Identities = 43/111 (38%), Positives = 69/111 (61%)

Query: 361  DNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD*V 420
            D D +KS++GYL  F GG ++ +S+L +C+ALST EAE+I  TE  KE + LK+  Q+  
Sbjct: 1186 DIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELG 1245

Query: 421  LSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDALIARLLELVR 471
            L +     +   +    L K+  +H+ +KHIDVR HWIR+ +    L++++
Sbjct: 1246 LHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLK 1296



 Score = 33.9 bits (76), Expect = 1.0
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 201  VKKQLGESFFMKDIGAA*HILGIRITRDR--QETLDVRGTLC*RLLQRS*MENAK 253
            +K  L +SF MKD+G A  ILG++I R+R  ++    +     R+L+R  M+NAK
Sbjct: 1025 LKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAK 1079


>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
            Copia VLP protein; Copia protease (EC 3.4.23.-)]
          Length = 1409

 Score = 54.7 bits (130), Expect = 6e-07
 Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 4/100 (4%)

Query: 8    DVMKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSLRYKAILMVEDFRHGK 67
            + +  E+ +   N ++ + K P+ K  ++++W+  VK       +RYKA L+   F    
Sbjct: 908  EAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKY 967

Query: 68   SVDSNE----MVKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
             +D  E    + ++S    +LSLV   +L+V Q+DVK AF
Sbjct: 968  QIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAF 1007



 Score = 43.9 bits (102), Expect = 0.001
 Identities = 34/116 (29%), Positives = 56/116 (47%), Gaps = 22/116 (18%)

Query: 360  VDNDF------KKSASGYLIK-FVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*L 412
            VD+D+      +KS +GYL K F   ++   ++    +A S+ EAE++ + EA +E L L
Sbjct: 1252 VDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWL 1311

Query: 413  K--------KLFQD*VLSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRD 460
            K        KL     +   N  C  I         +P+ H  +KHID++ H+ R+
Sbjct: 1312 KFLLTSINIKLENPIKIYEDNQGCISIAN-------NPSCHKRAKHIDIKYHFARE 1360


>RPOC_LACPL (Q88XZ2) DNA-directed RNA polymerase beta' chain (EC
           2.7.7.6) (RNAP beta' subunit) (Transcriptase beta'
           chain) (RNA polymerase beta' subunit)
          Length = 1213

 Score = 30.8 bits (68), Expect = 8.7
 Identities = 18/58 (31%), Positives = 29/58 (49%)

Query: 43  VKLESNSTSLRYKAILMVEDFRHGKSVDSNEMVKMSFIEIVLSLVATLDLEVKQIDVK 100
           V +ES +T L  K +L   ++R  K+   NE       E +  L+  +DLE +  D+K
Sbjct: 135 VVIESGNTPLEKKQLLSEREYREKKAQYGNEFEAAMGAEAIKRLLNNVDLEKEARDLK 192


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.367    0.164    0.593 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,601,257
Number of Sequences: 164201
Number of extensions: 1361541
Number of successful extensions: 6763
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6753
Number of HSP's gapped (non-prelim): 7
length of query: 511
length of database: 59,974,054
effective HSP length: 115
effective length of query: 396
effective length of database: 41,090,939
effective search space: 16272011844
effective search space used: 16272011844
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 68 (30.8 bits)