BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0209.4
         (342 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

KIF2_MOUSE (P28740) Kinesin-like protein KIF2                          35  0.36
KIF2_HUMAN (O00139) Kinesin-like protein KIF2 (Kinesin-2) (HK2)        35  0.36
NIFN_RHIME (P12781) Nitrogenase iron-molybdenum cofactor biosynt...    33  1.0
KIF2_XENLA (Q91637) Kinesin-like protein KIF2 (Kinesin-related p...    33  1.0
LRP2_HUMAN (P98164) Low-density lipoprotein receptor-related pro...    32  1.8
HUPK_BRAJA (P48342) Hydrogenase expression/formation protein hupK      31  3.9
LCP5_YEAST (P40079) U3 small nucleolar ribonucleoprotein protein...    30  6.7
RPA2_PYRAE (Q8ZYQ7) DNA-directed RNA polymerase subunit A'' (EC ...    30  8.8

>KIF2_MOUSE (P28740) Kinesin-like protein KIF2
          Length = 716

 Score = 34.7 bits (78), Expect = 0.36
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 5/50 (10%)

Query: 153 DRFSRKTKLAWIESQRQDLQVVGIKDRDISQPACVDIASHRVDV--SART 200
           D  +RKTKL  +E  +Q +QVVG+++R++    CV+     +D+  S RT
Sbjct: 348 DLLNRKTKLRVLEDGKQQVQVVGLQEREVK---CVEDVLKLIDIGNSCRT 394


>KIF2_HUMAN (O00139) Kinesin-like protein KIF2 (Kinesin-2) (HK2)
          Length = 679

 Score = 34.7 bits (78), Expect = 0.36
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 5/50 (10%)

Query: 153 DRFSRKTKLAWIESQRQDLQVVGIKDRDISQPACVDIASHRVDV--SART 200
           D  +RKTKL  +E  +Q +QVVG+++R++    CV+     +D+  S RT
Sbjct: 349 DLLNRKTKLRVLEDGKQQVQVVGLQEREVK---CVEDVLKLIDIGNSCRT 395


>NIFN_RHIME (P12781) Nitrogenase iron-molybdenum cofactor
           biosynthesis protein nifN
          Length = 441

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 6/70 (8%)

Query: 204 STLGILAKVPSLGGRIRPLGVGGALPIWRSGLASSSFATAIRAIMASSVCGVGGVEPLEP 263
           +T+  L     LGG +  LGVGGA+P++      +SFA  +               PL+ 
Sbjct: 11  ATINPLKSSQPLGGALAFLGVGGAIPLFHGSQGCTSFALVLLVRHFKEAI------PLQT 64

Query: 264 VAVDLVSTIL 273
            A+D V+ +L
Sbjct: 65  TAMDDVAIVL 74


>KIF2_XENLA (Q91637) Kinesin-like protein KIF2 (Kinesin-related
           protein XKIF2)
          Length = 682

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 5/50 (10%)

Query: 153 DRFSRKTKLAWIESQRQDLQVVGIKDRDISQPACVDIASHRVDV--SART 200
           D  +RKTKL  +E  +Q +QVVG+++R++    CV+     +++  S RT
Sbjct: 351 DLLNRKTKLRVLEDGKQQVQVVGLQEREVK---CVEDVLKLIEIGNSCRT 397


>LRP2_HUMAN (P98164) Low-density lipoprotein receptor-related protein
            2 precursor (Megalin) (Glycoprotein 330) (gp330)
          Length = 4655

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 21/68 (30%), Positives = 31/68 (44%), Gaps = 8/68 (11%)

Query: 28   PQKKLIVGDLPCPKMRNDNQSCDTTPTLTQSESRTINSLFTSMTSLLTVRVTDCSRHTDR 87
            PQ  +  GD+ C    ++NQ+C T  T +++E       FT    L   ++  C RH D 
Sbjct: 2967 PQSWVCDGDVDCTDGYDENQNC-TRRTCSENE-------FTCGYGLCIPKIFRCDRHNDC 3018

Query: 88   GGLIDSPG 95
            G   D  G
Sbjct: 3019 GDYSDERG 3026


>HUPK_BRAJA (P48342) Hydrogenase expression/formation protein hupK
          Length = 362

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 27/68 (39%), Positives = 35/68 (50%), Gaps = 8/68 (11%)

Query: 241 ATAIRAIMASSVCGVGGVEPLEPVAVDLVSTILLQCHTDRG--GLIDSHV---GHALIAS 295
           A A+RA+M +S   +GG  P E V   L    + Q  T  G  G+ + H    G AL AS
Sbjct: 112 AAAMRAVMQASAL-LGG--PSEAVPQALRRDAVAQIRTAVGTLGISEDHALASGSALAAS 168

Query: 296 LPCCDGRL 303
           +  CDGRL
Sbjct: 169 VEGCDGRL 176


>LCP5_YEAST (P40079) U3 small nucleolar ribonucleoprotein protein
           LCP5
          Length = 357

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 135 GRDIELTSDKTKWQDAMADRFSRKTKLAWIESQRQ 169
           G D  + S K K +D+ + R ++KT+ AW  +QR+
Sbjct: 322 GEDFGIFSSKRKLEDSTSRRGAKKTRSAWDRAQRR 356


>RPA2_PYRAE (Q8ZYQ7) DNA-directed RNA polymerase subunit A'' (EC
           2.7.7.6)
          Length = 379

 Score = 30.0 bits (66), Expect = 8.8
 Identities = 14/47 (29%), Positives = 27/47 (56%)

Query: 208 ILAKVPSLGGRIRPLGVGGALPIWRSGLASSSFATAIRAIMASSVCG 254
           ++A   +  GR+RP+G  G +    S LA ++F   ++ ++ +SV G
Sbjct: 302 LVADAMTWSGRLRPIGRHGVVGSKESPLARAAFEVTVKTLIEASVRG 348


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.320    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,422,237
Number of Sequences: 164201
Number of extensions: 1629137
Number of successful extensions: 3313
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3303
Number of HSP's gapped (non-prelim): 11
length of query: 342
length of database: 59,974,054
effective HSP length: 111
effective length of query: 231
effective length of database: 41,747,743
effective search space: 9643728633
effective search space used: 9643728633
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)