BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0207.9
(758 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POL2_MOUSE (P11369) Retrovirus-related Pol polyprotein [Contains... 116 3e-25
YTX2_XENLA (P14381) Transposon TX1 hypothetical 149 kDa protein ... 115 3e-25
LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog 115 3e-25
LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog 102 4e-21
MC50_ARATH (P92555) Hypothetical mitochondrial protein AtMg01250... 76 3e-13
PO21_NASVI (Q03278) Retrovirus-related Pol polyprotein from type... 72 5e-12
POLR_DROME (P16423) Retrovirus-related Pol polyprotein from type... 65 7e-10
PO23_POPJA (Q05118) Retrovirus-related Pol polyprotein from type... 56 4e-07
PO22_POPJA (Q03274) Retrovirus-related Pol polyprotein from type... 54 2e-06
PO21_SCICO (Q03279) Retrovirus-related Pol polyprotein from type... 49 5e-05
YMH5_CAEEL (P34472) Hypothetical protein F58A4.5 in chromosome III 46 4e-04
Y2R2_DROME (P16425) Hypothetical 115 kDa protein in type I retro... 38 0.087
YO84_CAEEL (P34620) Hypothetical protein ZK1236.4 in chromosome III 33 2.1
AKH1_MAIZE (P49079) Bifunctional aspartokinase/homoserine dehydr... 33 2.8
TRFE_RABIT (P19134) Serotransferrin precursor (Transferrin) (Sid... 32 6.2
YDC8_PSEAE (Q9HUN6) Hypothetical UPF0313 protein PA4928 32 8.1
YC44_ODOSI (P49539) Hypothetical 43.8 kDa protein ycf44 (ORF382) 32 8.1
>POL2_MOUSE (P11369) Retrovirus-related Pol polyprotein [Contains:
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1300
Score = 116 bits (290), Expect = 3e-25
Identities = 96/376 (25%), Positives = 172/376 (45%), Gaps = 19/376 (5%)
Query: 288 RLNKGHLAILNTPFSGEKVREPLFQMHPTKASGLDGLHTLFYQKFWHIVGDDVAHFCLSV 347
+LN+ + LN+P S +++ + + K+ G DG FYQ F + + +
Sbjct: 466 KLNQDQVDHLNSPISPKEIEAVINSLPTKKSPGPDGFSAEFYQTFKEDLIPILHKLFHKI 525
Query: 348 LQGRVSPGTIIPTLLVLIPKIKKS-VHATHFRPISLCNVPFKIIT*TLANKLKIVLPDII 406
P + + LIPK +K +FRPISL N+ KI+ LAN+++ + II
Sbjct: 526 EVEGTLPNSFYEATITLIPKPQKDPTKIENFRPISLMNIDAKILNKILANRIQEHIKAII 585
Query: 407 SGPQSAFVPGRLVTDNALVAYECFHFMKKKIYGCNGIMALKLDMSKAYDRVEWPFLRSAL 466
Q F+PG N + H++ K M + LD KA+D+++ PF+ L
Sbjct: 586 HPDQVGFIPGMQGWFNIRKSINVIHYINK--LKDKNHMIISLDAEKAFDKIQHPFMIKVL 643
Query: 467 EKMGFPVNWVSFIMDYVTTVLFQVMLNGNPQVPFDPGRGLRQGDPLSPYLFLICGEVFSA 526
E+ G +++ I + + + +NG G RQG PLSPYLF I EV +
Sbjct: 644 ERSGIQGPYLNMIKAIYSKPVANIKVNGEKLEAIPLKSGTRQGCPLSPYLFNIVLEVLAR 703
Query: 527 LIQRKIGASHLSGIKIARNVSAPVISHLLFADDNVIFARATREEASCVKGILAEYDKVYV 586
I+++ + GI+I + + L ADD +++ + + ++ + +V
Sbjct: 704 AIRQQ---KEIKGIQIGKE----EVKISLLADDMIVYISDPKNSTRELLNLINSFGEVVG 756
Query: 587 QVINFDKSM-LSYSRNVPSLYFNELKMLLGVKAMDNYDRYLGLPTIIGKSKTQIFRFVKE 645
IN +KSM Y++N + E++ + N +YLG+ + T+ + + +
Sbjct: 757 YKINSNKSMAFLYTKNKQA--EKEIRETTPFSIVTNNIKYLGV------TLTKEVKDLYD 808
Query: 646 RDWKKLKGRKEPSLSR 661
+++K LK + L R
Sbjct: 809 KNFKSLKKEIKEDLRR 824
>YTX2_XENLA (P14381) Transposon TX1 hypothetical 149 kDa protein
(ORF 2)
Length = 1308
Score = 115 bits (289), Expect = 3e-25
Identities = 79/269 (29%), Positives = 133/269 (49%), Gaps = 10/269 (3%)
Query: 297 LNTPFSGEKVREPLFQMHPTKASGLDGLHTLFYQKFWHIVGDDVAHFCLSVLQGRVSPGT 356
L TP + +++ + L M K+ GLDGL F+Q FW +G D + P +
Sbjct: 445 LETPITLDELSQALRLMPHNKSPGLDGLTIEFFQFFWDTLGPDFHRVLTEAFKKGELPLS 504
Query: 357 IIPTLLVLIPKIKKSVHATHFRPISLCNVPFKIIT*TLANKLKIVLPDIISGPQSAFVPG 416
+L L+PK ++RP+SL + +KI+ ++ +LK VL ++I QS VPG
Sbjct: 505 CRRAVLSLLPKKGDLRLIKNWRPVSLLSTDYKIVAKAISLRLKSVLAEVIHPDQSYTVPG 564
Query: 417 RLVTDNALVAYECFHFMKKKIYGCNGIMALKLDMSKAYDRVEWPFLRSALEKMGFPVNWV 476
R + DN + + HF ++ + L LD KA+DRV+ +L L+ F +V
Sbjct: 565 RTIFDNVFLIRDLLHFARRTGLS---LAFLSLDQEKAFDRVDHQYLIGTLQAYSFGPQFV 621
Query: 477 SFIMDYVTTVLFQVMLNGNPQVPFDPGRGLRQGDPLSPYLFLICGEVFSALIQRKIGASH 536
++ + V +N + P GRG+RQG PLS L+ + E F L++++
Sbjct: 622 GYLKTMYASAECLVKINWSLTAPLAFGRGVRQGCPLSGQLYSLAIEPFLCLLRKR----- 676
Query: 537 LSGIKIARNVSAPVISHLLFADDNVIFAR 565
L+G+ + V+S +ADD ++ A+
Sbjct: 677 LTGLVLKEPDMRVVLS--AYADDVILVAQ 703
>LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog
Length = 1260
Score = 115 bits (289), Expect = 3e-25
Identities = 87/312 (27%), Positives = 148/312 (46%), Gaps = 16/312 (5%)
Query: 288 RLNKGHLAILNTPFSGEKVREPLFQMHPTKASGLDGLHTLFYQKFWHIVGDDVAHFCLSV 347
RL++ + +LN P S ++ + + K+ G DG + FYQ F + + + ++
Sbjct: 439 RLSQKEVEMLNRPISSSEIASTIQNLPKKKSPGPDGFTSEFYQTFKEELVPILLNLFQNI 498
Query: 348 LQGRVSPGTIIPTLLVLIPKIKKS-VHATHFRPISLCNVPFKIIT*TLANKLKIVLPDII 406
+ + P T + LIPK K ++RPISL N+ KI+ L N+++ + II
Sbjct: 499 EKEGILPNTFYEANITLIPKPGKDPTRKENYRPISLMNIDAKILNKILTNRIQQHIKKII 558
Query: 407 SGPQSAFVPGRLVTDN---ALVAYECFHFMKKKIYGCNGIMALKLDMSKAYDRVEWPFLR 463
Q F+PG N ++ + + +K K + M L +D KA+D ++ PF+
Sbjct: 559 HHDQVGFIPGSQGWFNIRKSINVIQHINKLKNKDH-----MILSIDAEKAFDNIQHPFMI 613
Query: 464 SALEKMGFPVNWVSFIMDYVTTVLFQVMLNGNPQVPFDPGRGLRQGDPLSPYLFLICGEV 523
L+K+G ++ I + ++LNG F G RQG PLSP LF I EV
Sbjct: 614 RTLKKIGIEGTFLKLIEAIYSKPTANIILNGVKLKSFPLRSGTRQGCPLSPLLFNIVMEV 673
Query: 524 FSALIQRKIGASHLSGIKIARNVSAPVISHLLFADDNVIFARATREEASCVKGILAEYDK 583
+ I+ + + GI ++ + I LFADD +++ TR+ + + ++ EY
Sbjct: 674 LAIAIREE---KAIKGI----HIGSEEIKLSLFADDMIVYLENTRDSTTKLLEVIKEYSN 726
Query: 584 VYVQVINFDKSM 595
V IN KS+
Sbjct: 727 VSGYKINTHKSV 738
>LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog
Length = 1259
Score = 102 bits (254), Expect = 4e-21
Identities = 84/345 (24%), Positives = 154/345 (44%), Gaps = 17/345 (4%)
Query: 288 RLNKGHLAILNTPFSGEKVREPLFQMHPTKASGLDGLHTLFYQKFWHIVGDDVAHFCLSV 347
RLN+ + LN P + ++ + + K+ G +G FYQ++ + + S+
Sbjct: 439 RLNQEEVESLNRPITSSEIEAIINSLPNKKSPGPEGFTAEFYQRYKEELVPFLLKLFQSI 498
Query: 348 LQGRVSPGTIIPTLLVLIPKI-KKSVHATHFRPISLCNVPFKIIT*TLANKLKIVLPDII 406
+ + P + ++LIPK + + +FRPISL N+ KI+ LAN+++ + +I
Sbjct: 499 EKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANQIQQHIKKLI 558
Query: 407 SGPQSAFVPGRLVTDNALVAYECFHFMKKKIYGCNGIMALKLDMSKAYDRVEWPFLRSAL 466
Q F+P N + + + M + +D KA+D+++ PF+ L
Sbjct: 559 HHDQVGFIPAMQGWFNIRKSINIIQHINRT--KDTNHMIISIDAEKAFDKIQQPFMLKPL 616
Query: 467 EKMGFPVNWVSFIMDYVTTVLFQVMLNGNPQVPFDPGRGLRQGDPLSPYLFLICGEVFSA 526
K+G ++ I ++LNG G RQG PLSP L I EV +
Sbjct: 617 NKLGIDGTYLKIIRAIYDKPTANIILNGQKLEAPPLKTGTRQGCPLSPLLPNIVLEVLAR 676
Query: 527 LIQRKIGASHLSGIKIARNVSAPVISHLLFADDNVIFARATREEASCVKGILAEYDKVYV 586
I+++ + GI++ + + LFADD +++ A + +++ + KV
Sbjct: 677 AIRQE---KEIKGIQLGKE----EVKLSLFADDMIVYLENPIVSAQNLLKLISNFSKVSG 729
Query: 587 QVINFDKS---MLSYSRNVPSLYFNELKMLLGVKAMDNYDRYLGL 628
IN KS + + +R S +EL + K + +YLG+
Sbjct: 730 YKINVQKSQAFLYTNNRQTESQIMSELPFTIASKRI----KYLGI 770
>MC50_ARATH (P92555) Hypothetical mitochondrial protein AtMg01250
(ORF102)
Length = 122
Score = 76.3 bits (186), Expect = 3e-13
Identities = 38/69 (55%), Positives = 48/69 (69%), Gaps = 2/69 (2%)
Query: 491 MLNGNPQVPFDPGRGLRQGDPLSPYLFLICGEVFSALIQRKIGASHLSGIKIARNVSAPV 550
++NG PQ P RGLRQGDPLSPYLF++C EV S L +R L GI+++ N +P
Sbjct: 13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNN--SPR 70
Query: 551 ISHLLFADD 559
I+HLLFADD
Sbjct: 71 INHLLFADD 79
>PO21_NASVI (Q03278) Retrovirus-related Pol polyprotein from type I
retrotransposable element R2 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 1025
Score = 72.0 bits (175), Expect = 5e-12
Identities = 79/283 (27%), Positives = 125/283 (43%), Gaps = 30/283 (10%)
Query: 291 KGHLAILNTPFSGEKVREPLFQMHPTKASGLDGLHTLFYQKFWHIVGDDVAHFCLSVLQG 350
+G + L P S ++++E + A+G DG+ T W+ + + + ++
Sbjct: 309 QGEIKNLWRPISNDEIKE--VEACKRTAAGPDGMTTTA----WNSIDECIKSLFNMIMYH 362
Query: 351 RVSPGTIIPTLLVLIPKIKKSVHATHFRPISLCNVPFKIIT*TLANKLKIVLPDIISGPQ 410
P + + VLIPK ++ FRP+S+ +V + LAN+ I ++ Q
Sbjct: 363 GQCPRRYLDSRTVLIPKEPGTMDPACFRPLSIASVALRHFHRILANR--IGEHGLLDTRQ 420
Query: 411 SAFVPGRLVTDNALVAYECFHFMKKKIYGCNGIMALKLDMSKAYDRVEWPFLRSALEKMG 470
AF+ V +N + + KI G+ LD+ KA+D VE + AL +
Sbjct: 421 RAFIVADGVAENTSLLSAMIKEARMKI---KGLYIAILDVKKAFDSVEHRSILDALRRKK 477
Query: 471 FPV---NWVSFIMDYVTTVLFQVMLNGNPQVPFDPGRGLRQGDPLSPYLFLICGEVFSAL 527
P+ N++ ++ T L V G P RG+RQGDPLSP LF V A+
Sbjct: 478 LPLEMRNYIMWVYRNSKTRLEVVKTKGRW---IRPARGVRQGDPLSPLLF---NCVMDAV 531
Query: 528 IQR-KIGASHLSGIKIARNVSAPVISHLLFADDNVIFARATRE 569
++R L G A I L+FADD V+ A TRE
Sbjct: 532 LRRLPENTGFLMG--------AEKIGALVFADDLVLLAE-TRE 565
>POLR_DROME (P16423) Retrovirus-related Pol polyprotein from type II
retrotransposable element R2DM [Contains: Protease (EC
3.4.23.-); Reverse transcriptase (EC 2.7.7.49);
Endonuclease]
Length = 1057
Score = 65.1 bits (157), Expect = 7e-10
Identities = 60/212 (28%), Positives = 88/212 (41%), Gaps = 17/212 (8%)
Query: 354 PGTIIPTLLVLIPKIKKSVHATHFRPISLCNVPFKIIT*TLANKLKIVLPDIISGP-QSA 412
P +I V IPK + FRPIS+ +V + + LA +L I P Q
Sbjct: 392 PHSIRLARTVFIPKTVTAKRPQDFRPISVPSVLVRQLNAILATRLN---SSINWDPRQRG 448
Query: 413 FVPGRLVTDNALVAYECFHFMKKKIYGCNGIMALKLDMSKAYDRVEWPFLRSALEKMGFP 472
F+P DNA + K C LD+SKA+D + + L G P
Sbjct: 449 FLPTDGCADNATIVDLVLRHSHKHFRSC---YIANLDVSKAFDSLSHASIYDTLRAYGAP 505
Query: 473 VNWVSFIMDYVTTVLFQVMLNGNPQVPFDPGRGLRQGDPLSPYLFLICGEVFSALIQRKI 532
+V ++ + + +G F P RG++QGDPLSP LF + + + +I
Sbjct: 506 KGFVDYVQNTYEGGGTSLNGDGWSSEEFVPARGVKQGDPLSPILFNLVMDRLLRTLPSEI 565
Query: 533 GASHLSGIKIARNVSAPVISHLLFADDNVIFA 564
GA V + + FADD V+FA
Sbjct: 566 GA----------KVGNAITNAAAFADDLVLFA 587
>PO23_POPJA (Q05118) Retrovirus-related Pol polyprotein from type I
retrotransposable element R2 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 606
Score = 55.8 bits (133), Expect = 4e-07
Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 10/130 (7%)
Query: 431 HFMKKKIYGCNGIMALKLDMSKAYDRVEWPFLRSALEKMGFPVNWVSFIMDYVTTVLFQV 490
H++K + + LD+ KA+D V P + A+ G FIM +T +
Sbjct: 11 HYIKLRRLKGKTYNVVSLDIRKAFDTVSHPAILRAMRAFGIDDGMQDFIMSTITDAYTNI 70
Query: 491 MLNGNPQVPFDPGRGLRQGDPLSPYLF-LICGEVFSALIQRKIGASHLSGIKIARNVSAP 549
++ G G++QGDPLSP LF ++ E+ + L + GAS KIA
Sbjct: 71 VVGGRTTNKIYIRNGVKQGDPLSPVLFNIVLDELVTRLNDEQPGASMTPACKIA------ 124
Query: 550 VISHLLFADD 559
L FADD
Sbjct: 125 ---SLAFADD 131
>PO22_POPJA (Q03274) Retrovirus-related Pol polyprotein from type I
retrotransposable element R2 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 711
Score = 53.9 bits (128), Expect = 2e-06
Identities = 56/217 (25%), Positives = 96/217 (43%), Gaps = 17/217 (7%)
Query: 345 LSVLQGRV-SPGTIIPTLLVLIPKIKKSVHATHFRPISLCNVPFKIIT*TLANKLKIVLP 403
L +L+G V +P T + T LIPK + +++RPI++ + +++ LA +L+ +
Sbjct: 45 LHLLRGHVPTPWTAMRT--TLIPKDGDLENPSNWRPITIASALQRLLHRILAKRLEAAVE 102
Query: 404 DIISGPQSAFVPGRLVTDNALVAYECFHFMKKKIYGCNGIMALKLDMSKAYDRVEWPFLR 463
+ A + G LV L Y ++K Y + LD+ KA+D V +
Sbjct: 103 LHPAQKGYARIDGTLVNSLLLDTYISSRREQRKTYN-----VVSLDVRKAFDTVSHSSIC 157
Query: 464 SALEKMGFPVNWVSFIMDYVTTVLFQVMLNGNPQV-PFDPGRGLRQGDPLSPYLFLICGE 522
AL+++G ++I ++ + + Q RG++QGDPLSP+LF +
Sbjct: 158 RALQRLGIDEGTSNYITGSLSDSTTTIRVGPGSQTRKICIRRGVKQGDPLSPFLFNAVLD 217
Query: 523 VFSALIQRKIGASHLSGIKIARNVSAPVISHLLFADD 559
+Q G I + I L FADD
Sbjct: 218 ELLCSLQSTPG--------IGGTIGEEKIPVLAFADD 246
>PO21_SCICO (Q03279) Retrovirus-related Pol polyprotein from type I
retrotransposable element R2 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 869
Score = 48.9 bits (115), Expect = 5e-05
Identities = 77/309 (24%), Positives = 137/309 (43%), Gaps = 37/309 (11%)
Query: 262 LMDIFSTLFTTSNPMGIEAATSLVANRLNKG-HLAILNTPFSGEKVREPLFQMHPTKASG 320
+ D + +F T G AAT++ NR H+ L P S +++ + K +G
Sbjct: 124 MFDYWKDVFATG---GGSAATNI--NRAPPAPHMETLWDPVSLIEIKSA--RASNEKGAG 176
Query: 321 LDGLHTLFYQKFWHIVGDDVAH--FCLSVLQGRVSPGTIIPTLLVLIPKIKKSVHATHFR 378
DG+ + W+ + D + + V GRV P I + V PKI+ FR
Sbjct: 177 PDGVTP----RSWNALDDRYKRLLYNIFVFYGRV-PSPIKGSRTVFTPKIEGGPDPGVFR 231
Query: 379 PISLCNVPFKIIT*TLANKLKIVLPDIISGPQSAFVP--GRLVTDNALVAYEC-FHFMKK 435
P+S+C+V + LA + V Q+A++P G + + L A ++K
Sbjct: 232 PLSICSVILREFNKILARRF--VSCYTYDERQTAYLPIDGVCINVSMLTAIIAEAKRLRK 289
Query: 436 KIYGCNGIMALKLDMSKAYDRVEWPFLRSALEKMGFPVNWVSFIMDYVTTVLFQVMLNGN 495
+++ +A+ LD+ KA++ V L A+ + G P V +I D V+ ++ G
Sbjct: 290 ELH-----IAI-LDLVKAFNSVYHSALIDAITEAGCPPGVVDYIADMYNNVITEMQFEGK 343
Query: 496 PQVPFDPGRGLRQGDPLSPYLFLICGEVFSALIQRKIGASHLSGIKIARNVSAPVISHLL 555
++ G+ QGDPLS LF + E + + G ++ +++ N SA
Sbjct: 344 CELA-SILAGVYQGDPLSGPLFTLAYEKALRALNNE-GRFDIADVRV--NASA------- 392
Query: 556 FADDNVIFA 564
++DD ++ A
Sbjct: 393 YSDDGLLLA 401
>YMH5_CAEEL (P34472) Hypothetical protein F58A4.5 in chromosome III
Length = 1222
Score = 45.8 bits (107), Expect = 4e-04
Identities = 43/185 (23%), Positives = 77/185 (41%), Gaps = 9/185 (4%)
Query: 336 VGDDVAHFCLSVLQGRVSPGTIIPTLLVLIPKIKKSVHATHFRPISLCNVPFKIIT*TLA 395
+G + F S + R IIP IPK +++RPISL + +I+ +
Sbjct: 649 LGKGMQSFSDSAIPNRWKHAVIIP-----IPKKGNPSSPSNYRPISLTDPFARIMERIIC 703
Query: 396 NKLKIVLPDIISGPQSAFVPGRLVTDNALVAYECFHFMKKKIYGCNGIMALKLDMSKAYD 455
++++ ++S Q F+ R + + + +H + K + L D +KA+D
Sbjct: 704 SRIRSEYSHLLSPHQHGFLNFRSCPSSLVRSISLYHSILKNE---KSLDILFFDFAKAFD 760
Query: 456 RVEWPFLRSALEKMGFPVNWVSFIMDYVTTVLFQVMLNGNPQVPFDP-GRGLRQGDPLSP 514
+V P L L G S+ +++ F V +N P G+ QG P
Sbjct: 761 KVSHPILLKKLALFGLDKLTCSWFKEFLHLRTFSVKINKFVSSNAYPISSGVPQGSVSGP 820
Query: 515 YLFLI 519
LF++
Sbjct: 821 LLFIL 825
>Y2R2_DROME (P16425) Hypothetical 115 kDa protein in type I
retrotransposable element R1DM (ORF 2)
Length = 1021
Score = 38.1 bits (87), Expect = 0.087
Identities = 50/219 (22%), Positives = 87/219 (38%), Gaps = 19/219 (8%)
Query: 317 KASGLDGLHTLFYQKFWHIVGDDVAH-FCLSVLQGRVSPGTIIPTLLVLIP-KIKKSVHA 374
++ GLDG++ + W + + +A F + G P ++ L+ K
Sbjct: 450 RSPGLDGINGTICKAVWRAIPEHLASLFSRCIRLGYFPAEWKCPRVVSLLKGPDKDKCEP 509
Query: 375 THFRPISLCNVPFKIIT*TLANKLKIVLPDIISGPQSAFVPGRLVTDNALVAYECFHFMK 434
+ +R I L V K++ + N+++ VLP+ Q F GR V D + +K
Sbjct: 510 SSYRGICLLPVFGKVLEAIMVNRVREVLPEGCRW-QFGFRQGRCVED-------AWRHVK 561
Query: 435 KKI--YGCNGIMALKLDMSKAYDRVEWPFLRSALEKMGFPVN--WVSFIMDYVTTVLFQV 490
+ ++ +D A+D VEW S L +G W SF +
Sbjct: 562 SSVGASAAQYVLGTFVDFKGAFDNVEWSAALSRLADLGCREMGLWQSFFSGRRAVIRSS- 620
Query: 491 MLNGNPQVPFDPGRGLRQGDPLSPYLFLICGEVFSALIQ 529
+G +VP RG QG P+++ I +V +Q
Sbjct: 621 --SGTVEVPVT--RGCPQGSISGPFIWDILMDVLLQRLQ 655
>YO84_CAEEL (P34620) Hypothetical protein ZK1236.4 in chromosome III
Length = 364
Score = 33.5 bits (75), Expect = 2.1
Identities = 23/79 (29%), Positives = 36/79 (45%)
Query: 448 LDMSKAYDRVEWPFLRSALEKMGFPVNWVSFIMDYVTTVLFQVMLNGNPQVPFDPGRGLR 507
LD SKA+D+V L L + + + ++ ++T F+V + P G+
Sbjct: 23 LDFSKAFDKVSHDILLDKLTSIKINKHLIRWLDVFLTNRSFKVKVGNTLSEPKKTVCGVP 82
Query: 508 QGDPLSPYLFLICGEVFSA 526
QG +SP LF I SA
Sbjct: 83 QGSVISPVLFGIFVNEISA 101
>AKH1_MAIZE (P49079) Bifunctional aspartokinase/homoserine
dehydrogenase 1, chloroplast precursor (AK-HD 1)
(AK-HSDH 1) [Includes: Aspartokinase (EC 2.7.2.4);
Homoserine dehydrogenase (EC 1.1.1.3)]
Length = 920
Score = 33.1 bits (74), Expect = 2.8
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 16/127 (12%)
Query: 260 GFLMDIFSTLFTTSNPMGIEAATSLVANRLNKGHLAILNTPFSGEKVREPLFQMHPTKAS 319
GF+ + TT G + + +++ + L K + T G +F P K S
Sbjct: 281 GFIASTPENIPTTLKRDGSDFSAAIIGS-LVKARQVTIWTDVDG------VFSADPRKVS 333
Query: 320 GLDGLHTLFYQKFWHIVGDDVAHFCLSVLQGRVSPGTIIPTLLVLIPKIKKSVHATHFRP 379
L TL YQ+ W ++++F +VL P TIIP + IP + +++ T
Sbjct: 334 EAVILSTLSYQEAW-----EMSYFGANVLH----PRTIIPVMKYNIPIVIRNIFNTSAPG 384
Query: 380 ISLCNVP 386
+C P
Sbjct: 385 TMICQQP 391
>TRFE_RABIT (P19134) Serotransferrin precursor (Transferrin)
(Siderophilin) (Beta-1-metal binding globulin)
Length = 695
Score = 32.0 bits (71), Expect = 6.2
Identities = 19/77 (24%), Positives = 41/77 (52%), Gaps = 4/77 (5%)
Query: 553 HLLFADDNVIFARATREEASCVKGILAEYDKVYVQVIN--FDKSMLSYSRNVPSLYFNEL 610
HL A ++ + +R +++A+CVK L + Y + K + +S+ L+ ++
Sbjct: 594 HLAKAPNHAVVSR--KDKAACVKQKLLDLQVEYGNTVADCSSKFCMFHSKTKDLLFRDDT 651
Query: 611 KMLLGVKAMDNYDRYLG 627
K L+ ++ + Y++YLG
Sbjct: 652 KCLVDLRGKNTYEKYLG 668
>YDC8_PSEAE (Q9HUN6) Hypothetical UPF0313 protein PA4928
Length = 747
Score = 31.6 bits (70), Expect = 8.1
Identities = 20/67 (29%), Positives = 32/67 (46%), Gaps = 9/67 (13%)
Query: 412 AFVPGRLVTDNALVAYECFHFMKKKIYGCNGIMALKLDMSKA--------YDRVEWPFLR 463
AF P + T A+ + + ++K Y +G+ +K D + +D WP LR
Sbjct: 597 AFYPSPMATATAMY-HSGKNPLRKVTYKSDGVTIVKSDQQRRLHKAFLRYHDPKGWPLLR 655
Query: 464 SALEKMG 470
ALE+MG
Sbjct: 656 EALERMG 662
>YC44_ODOSI (P49539) Hypothetical 43.8 kDa protein ycf44 (ORF382)
Length = 382
Score = 31.6 bits (70), Expect = 8.1
Identities = 20/56 (35%), Positives = 31/56 (54%), Gaps = 6/56 (10%)
Query: 294 LAILNTPFSGEKVREPLFQMHPTKASGLDGLHTLFYQKFWHIVGDDVAHFCLSVLQ 349
++ILNT E VR+ +F P K + +D FYQ W+++G V + S+LQ
Sbjct: 234 VSILNTE-GNEIVRKTIFVNSPIKYNNID-----FYQTDWNVIGLRVQNDTSSILQ 283
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.334 0.146 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,786,324
Number of Sequences: 164201
Number of extensions: 3414588
Number of successful extensions: 10103
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 10068
Number of HSP's gapped (non-prelim): 20
length of query: 758
length of database: 59,974,054
effective HSP length: 118
effective length of query: 640
effective length of database: 40,598,336
effective search space: 25982935040
effective search space used: 25982935040
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 70 (31.6 bits)
Lotus: description of TM0207.9