BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0207.8
         (258 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subun...    47  3e-05
EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline...    43  7e-04
RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subun...    42  0.001
RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subun...    42  0.001
RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subun...    42  0.001
RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subun...    42  0.001
RPB1_ASHGO (Q75A34) DNA-directed RNA polymerase II largest subun...    41  0.003
NOTC_DROME (P07207) Neurogenic locus Notch protein precursor           39  0.012
EYA_DROME (Q05201) Developmental protein eyes absent (EC 3.1.3.4...    38  0.021
RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subun...    38  0.028
YP90_MYCBO (P59983) Hypothetical protein Mb2590                        37  0.047
YP60_MYCTU (Q50738) Hypothetical protein Rv2560/MT2637                 37  0.047
ZAP3_HUMAN (P49750) Nuclear protein ZAP3 (ZAP113)                      37  0.062
LHX1_HUMAN (P48742) LIM/homeobox protein Lhx1 (Homeobox protein ...    35  0.14
HXD8_MOUSE (P23463) Homeobox protein Hox-D8 (Hox-4.3) (Hox-5.4)        35  0.14
FXD1_HUMAN (Q16676) Forkhead box protein D1 (Forkhead-related pr...    35  0.23
MY15_HUMAN (Q9UKN7) Myosin XV (Unconventional myosin-15)               34  0.31
LHX1_RAT (P63007) LIM/homeobox protein Lhx1 (Homeobox protein LI...    34  0.31
LHX1_MOUSE (P63006) LIM/homeobox protein Lhx1 (Homeobox protein ...    34  0.31
LHX1_MESAU (P63008) LIM/homeobox protein Lhx1 (Homeobox protein ...    34  0.31

>RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subunit
            (EC 2.7.7.6)
          Length = 1852

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 49/178 (27%), Positives = 71/178 (39%), Gaps = 13/178 (7%)

Query: 3    GAGSYND--WGYYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHY 60
            GA  +N+  W   SP  P   LSP   ++    P     S+P      P Y  P +P + 
Sbjct: 1539 GASPFNEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQFSMTSPHYS-PTSPSYS 1597

Query: 61   PVHPRSYGYDFFPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPSLAEPQPCFPDLNSM 120
            P  P + G      S S + P  YS  +   S     + PTS  PS +   P +   +  
Sbjct: 1598 PTSPAA-GQSPVSPSYSPTSP-SYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPS 1653

Query: 121  GLASEDSFGYEQWLSASSKPSLGEAQPYFPSYIPSTIPSPTSSVAAPIHWSSSSGFAP 178
               S  S+      S S  PS     P  P+Y P+   SPT S  +P +  +S  ++P
Sbjct: 1654 YSPSSPSYSPS---SPSYSPSSPRYSPTSPTYSPT---SPTYSPTSPTYSPTSPTYSP 1705



 Score = 40.0 bits (92), Expect = 0.006
 Identities = 55/196 (28%), Positives = 74/196 (37%), Gaps = 36/196 (18%)

Query: 13   YSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSY----G 68
            YSP  P  + SP +  +S   P ++  S P      P Y  P +P + P  P SY    G
Sbjct: 1661 YSPSSP--SYSPSSPRYSPTSPTYSPTS-PTYSPTSPTYS-PTSPTYSPTSP-SYESGGG 1715

Query: 69   YDFFPESDSVSKPYGYSGLASEDSFWYDQWPPTS-----SKPSLAEPQPCFPDLNSMGLA 123
            Y       S S P  YS  +   S    Q+ PTS     S P+     P +   +  G +
Sbjct: 1716 YSPSSPKYSPSSPT-YSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGFS 1774

Query: 124  SEDSFGYEQWLSASSK---PSLGEAQPYFPSYIPS-------------TIP-----SPTS 162
            S          S +S    PS  +  P  P+Y PS             T P     SPT 
Sbjct: 1775 SPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSSPTY 1834

Query: 163  SVAAPIHWSSSSGFAP 178
            S A+P +  SS  + P
Sbjct: 1835 SPASPSYSPSSPTYDP 1850


>EXTN_TOBAC (P13983) Extensin precursor (Cell wall
           hydroxyproline-rich glycoprotein)
          Length = 620

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 50/175 (28%), Positives = 64/175 (36%), Gaps = 26/175 (14%)

Query: 13  YSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPN-----PVHYPVHPRSY 67
           YSPP P    SP   A+S + PP      P      PAY  PP      P + P+ P S 
Sbjct: 289 YSPPPPSPIYSPPPPAYSPSPPP---TPTPTFSPPPPAYSPPPTYSPPPPTYLPL-PSSP 344

Query: 68  GYDFFPESDSVSKPYGYSGLASEDSFWYDQWPPTSS--KPSLAEPQPCF------PDLNS 119
            Y   P   S   P  YS         Y   PP SS   PS + P P +      P   S
Sbjct: 345 IYSPPPPVYSPPPPPSYSPPPPT----YLPPPPPSSPPPPSFSPPPPTYEQSPPPPPAYS 400

Query: 120 MGLASEDSFGYEQWLSASSKPSLGEAQPYFPSYIP-----STIPSPTSSVAAPIH 169
             L +  ++       +   P+  +  P  P+Y P     S  P PT S   P +
Sbjct: 401 PPLPAPPTYSPPPPTYSPPPPTYAQPPPLPPTYSPPPPAYSPPPPPTYSPPPPTY 455



 Score = 37.7 bits (86), Expect = 0.028
 Identities = 49/170 (28%), Positives = 58/170 (33%), Gaps = 24/170 (14%)

Query: 13  YSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYDFF 72
           YSPP P    SP  +      PP      P      P Y  PP P + P  P +    F 
Sbjct: 265 YSPPPPAYAQSPQPSPTYSPPPPTYSPPPP-----SPIYS-PPPPAYSPSPPPTPTPTFS 318

Query: 73  PESDSVSKPYGYSG-----LASEDSFWYDQWPPTSS---KPSLAEPQPCFPDLNSMGLAS 124
           P   + S P  YS      L    S  Y   PP  S    PS + P P +          
Sbjct: 319 PPPPAYSPPPTYSPPPPTYLPLPSSPIYSPPPPVYSPPPPPSYSPPPPTYLPPPPPSSPP 378

Query: 125 EDSFG-----YEQWLSASSKPSLGEAQPYFPSYIPSTIPSPTSSVAAPIH 169
             SF      YEQ  S    P+     P  P+Y P   P PT S   P +
Sbjct: 379 PPSFSPPPPTYEQ--SPPPPPAYSPPLPAPPTYSP---PPPTYSPPPPTY 423



 Score = 33.5 bits (75), Expect = 0.52
 Identities = 42/159 (26%), Positives = 52/159 (32%), Gaps = 11/159 (6%)

Query: 13  YSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYDFF 72
           YSPP P     P +  +S   P ++    P      P Y  PP P   P  P S+     
Sbjct: 330 YSPPPPTYLPLPSSPIYSPPPPVYSPPPPPSYSPPPPTYLPPPPPSSPP--PPSFSPPPP 387

Query: 73  PESDSVSKPYGYSGLASEDSFWYDQWPPTSS--KPSLAEPQPCFPDLNSMGLASEDSFGY 130
               S   P  YS         Y   PPT S   P+ A+P P  P        S     Y
Sbjct: 388 TYEQSPPPPPAYSPPLPAPP-TYSPPPPTYSPPPPTYAQPPPLPPTY------SPPPPAY 440

Query: 131 EQWLSASSKPSLGEAQPYFPSYIPSTIPSPTSSVAAPIH 169
                 +  P      P  P+Y     P PT S   P +
Sbjct: 441 SPPPPPTYSPPPPTYSPPPPAYAQPPPPPPTYSPPPPAY 479



 Score = 31.2 bits (69), Expect = 2.6
 Identities = 17/46 (36%), Positives = 18/46 (38%)

Query: 12  YYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNP 57
           Y  PP    T SP   A+S   PP      P      PAY  PP P
Sbjct: 423 YAQPPPLPPTYSPPPPAYSPPPPPTYSPPPPTYSPPPPAYAQPPPP 468



 Score = 29.6 bits (65), Expect = 7.5
 Identities = 31/114 (27%), Positives = 39/114 (34%), Gaps = 13/114 (11%)

Query: 12  YYSPPQPHSTLSPYAAAFSVNRP-PFNDVSAPFVDSDEPAYGVP-------PNPVHYPVH 63
           Y  PP P  T SP   A+S   P P      P V    P +  P       P P H    
Sbjct: 462 YAQPPPPPPTYSPPPPAYSPPPPSPIYSPPPPQVQPLPPTFSPPPPRRIHLPPPPHRQPR 521

Query: 64  PRSYGYDFFPESDSVSKPYGYSGLASEDSFWYDQWP-PT----SSKPSLAEPQP 112
           P +  Y   P   + S P      +     W  + P PT     S P+ + P P
Sbjct: 522 PPTPTYGQPPSPPTFSPPPPRQIHSPPPPHWQPRTPTPTYGQPPSPPTFSAPPP 575


>RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subunit
            (EC 2.7.7.6) (RPB1)
          Length = 1970

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 46/171 (26%), Positives = 71/171 (40%), Gaps = 19/171 (11%)

Query: 13   YSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYDFF 72
            YSP  P  + SP + ++S   P ++  S P      P+Y  P +P + P  P      + 
Sbjct: 1678 YSPTSP--SYSPTSPSYSPTSPSYSPTS-PSYSPTSPSYS-PTSPSYSPTSP-----SYS 1728

Query: 73   PESDSVSKPY-GYSGLASEDSFWYDQWPPTSSKPSLAEPQPCFPDLNSMGLASEDSFGYE 131
            P S S S     YS  +   S     + PTS  PS +   P +   +     +  ++   
Sbjct: 1729 PTSPSYSPTSPSYSPTSPNYSPTSPNYTPTS--PSYSPTSPSYSPTSPNYTPTSPNYSPT 1786

Query: 132  QWLSASSKPSLGEAQPYFPSYIPS----TIPSPTSSVAAPIHWSSSSGFAP 178
               S S  P+     P  PSY PS    T  SPT + ++P +  SS  ++P
Sbjct: 1787 ---SPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSP 1834


>RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subunit
            (EC 2.7.7.6) (RPB1)
          Length = 1970

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 46/171 (26%), Positives = 71/171 (40%), Gaps = 19/171 (11%)

Query: 13   YSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYDFF 72
            YSP  P  + SP + ++S   P ++  S P      P+Y  P +P + P  P      + 
Sbjct: 1678 YSPTSP--SYSPTSPSYSPTSPSYSPTS-PSYSPTSPSYS-PTSPSYSPTSP-----SYS 1728

Query: 73   PESDSVSKPY-GYSGLASEDSFWYDQWPPTSSKPSLAEPQPCFPDLNSMGLASEDSFGYE 131
            P S S S     YS  +   S     + PTS  PS +   P +   +     +  ++   
Sbjct: 1729 PTSPSYSPTSPSYSPTSPNYSPTSPNYTPTS--PSYSPTSPSYSPTSPNYTPTSPNYSPT 1786

Query: 132  QWLSASSKPSLGEAQPYFPSYIPS----TIPSPTSSVAAPIHWSSSSGFAP 178
               S S  P+     P  PSY PS    T  SPT + ++P +  SS  ++P
Sbjct: 1787 ---SPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSP 1834


>RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subunit
           (EC 2.7.7.6) (RPB1) (Fragment)
          Length = 467

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 46/171 (26%), Positives = 71/171 (40%), Gaps = 19/171 (11%)

Query: 13  YSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYDFF 72
           YSP  P  + SP + ++S   P ++  S P      P+Y  P +P + P  P      + 
Sbjct: 175 YSPTSP--SYSPTSPSYSPTSPSYSPTS-PSYSPTSPSYS-PTSPSYSPTSP-----SYS 225

Query: 73  PESDSVSKPY-GYSGLASEDSFWYDQWPPTSSKPSLAEPQPCFPDLNSMGLASEDSFGYE 131
           P S S S     YS  +   S     + PTS  PS +   P +   +     +  ++   
Sbjct: 226 PTSPSYSPTSPSYSPTSPNYSPTSPNYTPTS--PSYSPTSPSYSPTSPNYTPTSPNYSPT 283

Query: 132 QWLSASSKPSLGEAQPYFPSYIPS----TIPSPTSSVAAPIHWSSSSGFAP 178
              S S  P+     P  PSY PS    T  SPT + ++P +  SS  ++P
Sbjct: 284 ---SPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSP 331


>RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subunit
            (EC 2.7.7.6)
          Length = 1840

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 52/168 (30%), Positives = 73/168 (42%), Gaps = 23/168 (13%)

Query: 13   YSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYDFF 72
            YSP  P  + SP + ++S   P ++  S P      P+Y  P +P + P  P   GY   
Sbjct: 1657 YSPTSP--SYSPTSPSYSPTSPSYSPTS-PSYSPTSPSYS-PTSPAYSPTSP---GYSPT 1709

Query: 73   PESDSVSKP-YGYSGLA-SEDSFWYDQWPPTSSKPSLAEPQPCFPDLNSMGLASEDSFGY 130
              S S + P YG +  + +  S  Y   P  +  PS A   P  P        S  S  Y
Sbjct: 1710 SPSYSPTSPSYGPTSPSYNPQSAKYS--PSIAYSPSNARLSPASP-------YSPTSPNY 1760

Query: 131  EQWLSASSKPSLGEAQPYFPSYIPSTIPSPTSSVAAPIHWSSSSGFAP 178
                S S  P+     P  P+Y PS   SP SS A+P  +S S+G++P
Sbjct: 1761 SP-TSPSYSPTSPSYSPSSPTYSPS---SPYSSGASP-DYSPSAGYSP 1803



 Score = 37.0 bits (84), Expect = 0.047
 Identities = 43/167 (25%), Positives = 66/167 (38%), Gaps = 27/167 (16%)

Query: 13   YSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGY--- 69
            YSP  P  + SP + ++S   P ++  S P      P Y  P +P + P  P SYG    
Sbjct: 1671 YSPTSP--SYSPTSPSYSPTSPSYSPTS-PAYSPTSPGYS-PTSPSYSPTSP-SYGPTSP 1725

Query: 70   DFFPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPSLAEP-QPCFPDLNSMGLASEDSF 128
             + P+S   S    YS              P++++ S A P  P  P+ +     +  S+
Sbjct: 1726 SYNPQSAKYSPSIAYS--------------PSNARLSPASPYSPTSPNYSP----TSPSY 1767

Query: 129  GYEQWLSASSKPSLGEAQPYFPSYIPSTIPSPTSSVAAPIHWSSSSG 175
                   + S P+   + PY     P   PS   S   P +  SS+G
Sbjct: 1768 SPTSPSYSPSSPTYSPSSPYSSGASPDYSPSAGYSPTLPGYSPSSTG 1814


>RPB1_ASHGO (Q75A34) DNA-directed RNA polymerase II largest subunit
            (EC 2.7.7.6) (RNA polymerase II subunit 1)
          Length = 1745

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 15/146 (10%)

Query: 34   PPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYDFFPESDSVSKPY-GYSGLASEDS 92
            P F DVS+P      PAY  P +P + P  P      + P S S S     YS  +   S
Sbjct: 1535 PGFGDVSSPGFSPTSPAYS-PTSPSYSPTSP-----SYSPTSPSYSPTSPSYSPTSPSYS 1588

Query: 93   FWYDQWPPTSSKPSLAEPQPCFPDLNSMGLASEDSFGYEQWLSASSKPSLGEAQPYFPSY 152
                 + PTS  PS +   P +   +     +  S+      S S  P+     P  PSY
Sbjct: 1589 PTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSP---TSPSYSPTSPSYSPTSPSY 1643

Query: 153  IPSTIPSPTSSVAAPIHWSSSSGFAP 178
             P+   SP+ S  +P +  +S  ++P
Sbjct: 1644 SPT---SPSYSPTSPSYSPTSPSYSP 1666


>NOTC_DROME (P07207) Neurogenic locus Notch protein precursor
          Length = 2703

 Score = 38.9 bits (89), Expect = 0.012
 Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 9/93 (9%)

Query: 83   GYSGLASEDSFWYDQWPPTSSKPSLAEPQPCFPDLNSMGLASEDSFGYEQWLSASSKPSL 142
            G+ G  S DSF   Q  P S + S++   P    L+     ++ +F   Q+L+ SS+ S 
Sbjct: 2583 GFCG--SPDSFHSGQMNPPSIQSSMSGSSPSTNMLSPSSQHNQQAF--YQYLTPSSQHSG 2638

Query: 143  GEAQPYFPSYIPSTIPS-PTSSVAAPIHWSSSS 174
            G      P ++  T+ S PT S  +P HWSSSS
Sbjct: 2639 GHT----PQHLVQTLDSYPTPSPESPGHWSSSS 2667


>EYA_DROME (Q05201) Developmental protein eyes absent (EC 3.1.3.48)
           (Protein Clift)
          Length = 766

 Score = 38.1 bits (87), Expect = 0.021
 Identities = 58/209 (27%), Positives = 84/209 (39%), Gaps = 41/209 (19%)

Query: 7   YNDWGYYSPPQPHSTL-SPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPR 65
           YN    Y+PP  +S   +PYAAA +  +        P   +   AY  P           
Sbjct: 271 YNSMQQYTPPPFYSGYGTPYAAATAARQAKME----PGAAAAAAAYLTP----------- 315

Query: 66  SYGYDFFPESDSVSKPY-GYSGLASED--SFWYDQW-----PPTSSKPSLAEPQPCFPDL 117
           SY       S   S PY GY+    +D   ++ +Q+     P   S  +++ P       
Sbjct: 316 SYAASGNNNSQLYSSPYAGYNNFGQQDYGGYYNEQYGNYYSPANYSPYAVSSP------- 368

Query: 118 NSMGLASEDSFGYEQWLSASSKPSLGEAQPYFPSYIPSTIPSPTSSVAAPIHWSSSSGFA 177
                +S  S G+   ++ASS  S      +  + +  T  SP S +  PI  S+ SG  
Sbjct: 369 -----SSSASHGHGFHVAASSNLSESPTDTHSTTPVHQTTHSPHSPL--PISPSTGSGIG 421

Query: 178 PLDVVPSFGDYAAENSSEFGFSGLG-AGS 205
           PL  V +    AA NSS  G S +G AGS
Sbjct: 422 PLGNVSAAAAAAALNSS--GGSSVGTAGS 448


>RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subunit
            (EC 2.7.7.6)
          Length = 1887

 Score = 37.7 bits (86), Expect = 0.028
 Identities = 45/168 (26%), Positives = 66/168 (38%), Gaps = 28/168 (16%)

Query: 12   YYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYDF 71
            Y+SPP   S ++P         P F+  +A       P++  P +P   P  P      +
Sbjct: 1517 YFSPPGHVSAMTP-------GGPSFSPSAASDASGMSPSWS-PAHPGSSPSSPGPSMSPY 1568

Query: 72   FPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPSLAEPQPCFPDLNSMGLASEDSFGYE 131
            FP S SVS  Y      S  S  Y    P  + P+ +   P +   + +         Y 
Sbjct: 1569 FPASPSVSPSY------SPTSPNYTASSPGGASPNYSPSSPNYSPTSPL---------YA 1613

Query: 132  QWLSASSKPSLGEAQPYFPSYIPSTIP-SPTSSVAAP-IHWSSSSGFA 177
                AS+ P+     P    Y PS+   SPTS V +P + + SS  FA
Sbjct: 1614 SPRYASTTPNF---NPQSTGYSPSSSGYSPTSPVYSPTVQFQSSPSFA 1658


>YP90_MYCBO (P59983) Hypothetical protein Mb2590
          Length = 325

 Score = 37.0 bits (84), Expect = 0.047
 Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 11/70 (15%)

Query: 2  EGAGSYNDWGYYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPN--PVH 59
          +GAGSY   GY +PP P      Y        PP  +   P      P YG PP   P  
Sbjct: 19 QGAGSYPPPGYGAPPPPPG----YGPPPGTYLPPGYNAPPP-----PPGYGPPPGPPPPG 69

Query: 60 YPVHPRSYGY 69
          YP H +S G+
Sbjct: 70 YPTHLQSSGF 79


>YP60_MYCTU (Q50738) Hypothetical protein Rv2560/MT2637
          Length = 325

 Score = 37.0 bits (84), Expect = 0.047
 Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 11/70 (15%)

Query: 2  EGAGSYNDWGYYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPN--PVH 59
          +GAGSY   GY +PP P      Y        PP  +   P      P YG PP   P  
Sbjct: 19 QGAGSYPPPGYGAPPPPPG----YGPPPGTYLPPGYNAPPP-----PPGYGPPPGPPPPG 69

Query: 60 YPVHPRSYGY 69
          YP H +S G+
Sbjct: 70 YPTHLQSSGF 79


>ZAP3_HUMAN (P49750) Nuclear protein ZAP3 (ZAP113)
          Length = 1822

 Score = 36.6 bits (83), Expect = 0.062
 Identities = 49/163 (30%), Positives = 61/163 (37%), Gaps = 30/163 (18%)

Query: 5   GSYNDWGYYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPN----PVHY 60
           G Y DW    PP P     P   A S  +             D P   VP      P   
Sbjct: 95  GGYGDWQPPPPPMP----PPPGPALSYQKQQQYKHQMLHHQRDGPPGLVPMELESPPESP 150

Query: 61  PVHPRSYGYDFFPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPSL--AEPQPCFPDLN 118
           PV P SY     P S S   P            +Y   PPTSS+P L  A+P P     +
Sbjct: 151 PVPPGSY----MPPSQSYMPP------PQPPPSYY---PPTSSQPYLPPAQPSPSQSPPS 197

Query: 119 SMGLASEDSFGYEQWLSASSKPSLGEAQPYFPSYIPSTIPSPT 161
              LA   S+      S+SS+  L  +Q    SY+PS+  SP+
Sbjct: 198 QSYLAPTPSYSSS---SSSSQSYLSHSQ----SYLPSSQASPS 233


>LHX1_HUMAN (P48742) LIM/homeobox protein Lhx1 (Homeobox protein
           Lim-1)
          Length = 404

 Score = 35.4 bits (80), Expect = 0.14
 Identities = 39/156 (25%), Positives = 58/156 (37%), Gaps = 24/156 (15%)

Query: 42  PFVDSDEPAYGVPPNPVHYPVHPRSYGYDFFPESDSVSKPYGYSGLASEDSFWYDQWPPT 101
           P VD  EP   +P  P  +      YG       D  S+ YG  G    +  ++ Q PP+
Sbjct: 258 PLVDRLEPGELIPNGPFSF------YG-------DYQSEYYGPGG----NYDFFPQGPPS 300

Query: 102 SSKPSLAEPQPCFPDLNSMGLASEDSFGYEQWLSASSKPSLGEAQPYFPSYIPSTIPSPT 161
           S     A+     P + S G +     G E  L      S  +      ++ P   PSP 
Sbjct: 301 SQ----AQTPVDLPFVPSSGPSGTPLGGLEHPLPGHHPSSEAQRFTDILAHPPGDSPSPE 356

Query: 162 SSVAAPIHWSSSSGFAPLDVVPSFGDYAAENSSEFG 197
            S+  P+H  S+  F P    P F   +    + +G
Sbjct: 357 PSLPGPLHSMSAEVFGP---SPPFSSLSVNGGASYG 389


>HXD8_MOUSE (P23463) Homeobox protein Hox-D8 (Hox-4.3) (Hox-5.4)
          Length = 289

 Score = 35.4 bits (80), Expect = 0.14
 Identities = 41/147 (27%), Positives = 49/147 (32%), Gaps = 19/147 (12%)

Query: 13  YSPPQPHSTLSPYAAAFSVNRP-PFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYDF 71
           ++ P PH   SP         P P  D       S   AY   P P H P  P SYG   
Sbjct: 65  HAHPHPHPHPSPPPGCGGGGGPGPGQDYFHAGAGSPTAAYQAAPPPPHPPPPPMSYGQGG 124

Query: 72  FPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPSLAEPQPCFPDLNSMGLASEDSFGYE 131
                  +K YGY  L  +  F       T  +  L +   C    +S G   ED     
Sbjct: 125 IACHGEPAKFYGYDNLQRQPIF------TTQQEAELVQYPDC---KSSSGNIGED----P 171

Query: 132 QWLSASSKPSLGEAQPYFPSYIPSTIP 158
             L+ SS PS       FP   P   P
Sbjct: 172 DHLNQSSSPS-----QMFPWMRPQAAP 193


>FXD1_HUMAN (Q16676) Forkhead box protein D1 (Forkhead-related
           protein FKHL8) (Forkhead-related transcription factor 4)
           (FREAC-4)
          Length = 465

 Score = 34.7 bits (78), Expect = 0.23
 Identities = 36/164 (21%), Positives = 53/164 (31%), Gaps = 16/164 (9%)

Query: 15  PPQPHST-LSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYDFFP 73
           PP PH+    PY   + +  PP+   SA F  +   A     +P H P  P         
Sbjct: 263 PPPPHAYGYGPYGCGYGLQLPPYAPPSALFAAAAAAAAAAAFHP-HSPPPP--------- 312

Query: 74  ESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPSLAEPQPCFPDLNSMGLASEDSFGYEQW 133
                  P+G +   +  +F Y   P  ++ P                  +   F  E  
Sbjct: 313 -----PPPHGAAAELARTAFGYRPHPLGAALPGPLPASAAKAGGPGASALARSPFSIESI 367

Query: 134 LSASSKPSLGEAQPYFPSYIPSTIPSPTSSVAAPIHWSSSSGFA 177
           +  S  P+   A     +      PSP+   A P   SS  G A
Sbjct: 368 IGGSLGPAAAAAAAAQAAAAAQASPSPSPVAAPPAPGSSGGGCA 411


>MY15_HUMAN (Q9UKN7) Myosin XV (Unconventional myosin-15)
          Length = 3530

 Score = 34.3 bits (77), Expect = 0.31
 Identities = 52/198 (26%), Positives = 66/198 (33%), Gaps = 69/198 (34%)

Query: 13  YSPPQPH-STLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYDF 71
           Y   +P+ + L PY+ A+    PP+ D            YG PP   +   HP  YG  F
Sbjct: 254 YEEQEPYLAGLGPYSPAW----PPYGD----------HYYGYPPEDPYDYYHPDYYGGPF 299

Query: 72  FPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPSLAEPQPCFPDLNSMGLASEDSF--G 129
            P        YGY          YD + P  + PS              G +S  S+  G
Sbjct: 300 DP-----GYTYGYG---------YDDYEPPYAPPS--------------GYSSPYSYHDG 331

Query: 130 YEQWLSASSKPSLGEAQP---YFPSYIPSTIPSPTSSVAAPIHWSSSSGFAPLDVVPSFG 186
           YE           GEA P   Y   Y P   P P   +  P H        P D VP F 
Sbjct: 332 YE-----------GEAHPYGYYLDPYAPYDAPYPPYDL--PYH-------TPYD-VPYFD 370

Query: 187 DYAAENSSEFGFSGLGAG 204
            Y    +  +     G G
Sbjct: 371 PYGVHYTVPYAEGVYGGG 388


>LHX1_RAT (P63007) LIM/homeobox protein Lhx1 (Homeobox protein
           LIM-1) (Rlim)
          Length = 406

 Score = 34.3 bits (77), Expect = 0.31
 Identities = 38/156 (24%), Positives = 58/156 (36%), Gaps = 24/156 (15%)

Query: 42  PFVDSDEPAYGVPPNPVHYPVHPRSYGYDFFPESDSVSKPYGYSGLASEDSFWYDQWPPT 101
           P VD  EP   +P  P  +      YG       D  S+ YG  G    +  ++ Q PP+
Sbjct: 260 PLVDRLEPGELIPNGPFSF------YG-------DYQSEYYGPGG----NYDFFPQGPPS 302

Query: 102 SSKPSLAEPQPCFPDLNSMGLASEDSFGYEQWLSASSKPSLGEAQPYFPSYIPSTIPSPT 161
           S     A+     P + S G +     G +  L      S  +      ++ P   PSP 
Sbjct: 303 SQ----AQTPVDLPFVPSSGPSGTPLGGLDHPLPGHHPSSEAQRFTDILAHPPGDSPSPE 358

Query: 162 SSVAAPIHWSSSSGFAPLDVVPSFGDYAAENSSEFG 197
            S+  P+H  S+  F P    P F   +    + +G
Sbjct: 359 PSLPGPLHSMSAEVFGP---SPPFSSLSVNGGASYG 391


>LHX1_MOUSE (P63006) LIM/homeobox protein Lhx1 (Homeobox protein
           LIM-1)
          Length = 406

 Score = 34.3 bits (77), Expect = 0.31
 Identities = 38/156 (24%), Positives = 58/156 (36%), Gaps = 24/156 (15%)

Query: 42  PFVDSDEPAYGVPPNPVHYPVHPRSYGYDFFPESDSVSKPYGYSGLASEDSFWYDQWPPT 101
           P VD  EP   +P  P  +      YG       D  S+ YG  G    +  ++ Q PP+
Sbjct: 260 PLVDRLEPGELIPNGPFSF------YG-------DYQSEYYGPGG----NYDFFPQGPPS 302

Query: 102 SSKPSLAEPQPCFPDLNSMGLASEDSFGYEQWLSASSKPSLGEAQPYFPSYIPSTIPSPT 161
           S     A+     P + S G +     G +  L      S  +      ++ P   PSP 
Sbjct: 303 SQ----AQTPVDLPFVPSSGPSGTPLGGLDHPLPGHHPSSEAQRFTDILAHPPGDSPSPE 358

Query: 162 SSVAAPIHWSSSSGFAPLDVVPSFGDYAAENSSEFG 197
            S+  P+H  S+  F P    P F   +    + +G
Sbjct: 359 PSLPGPLHSMSAEVFGP---SPPFSSLSVNGGASYG 391


>LHX1_MESAU (P63008) LIM/homeobox protein Lhx1 (Homeobox protein
           LIM-1) (Homeobox protein LMX-2)
          Length = 406

 Score = 34.3 bits (77), Expect = 0.31
 Identities = 38/156 (24%), Positives = 58/156 (36%), Gaps = 24/156 (15%)

Query: 42  PFVDSDEPAYGVPPNPVHYPVHPRSYGYDFFPESDSVSKPYGYSGLASEDSFWYDQWPPT 101
           P VD  EP   +P  P  +      YG       D  S+ YG  G    +  ++ Q PP+
Sbjct: 260 PLVDRLEPGELIPNGPFSF------YG-------DYQSEYYGPGG----NYDFFPQGPPS 302

Query: 102 SSKPSLAEPQPCFPDLNSMGLASEDSFGYEQWLSASSKPSLGEAQPYFPSYIPSTIPSPT 161
           S     A+     P + S G +     G +  L      S  +      ++ P   PSP 
Sbjct: 303 SQ----AQTPVDLPFVPSSGPSGTPLGGLDHPLPGHHPSSEAQRFTDILAHPPGDSPSPE 358

Query: 162 SSVAAPIHWSSSSGFAPLDVVPSFGDYAAENSSEFG 197
            S+  P+H  S+  F P    P F   +    + +G
Sbjct: 359 PSLPGPLHSMSAEVFGP---SPPFSSLSVNGGASYG 391


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.312    0.132    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,794,466
Number of Sequences: 164201
Number of extensions: 1714385
Number of successful extensions: 3783
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 3687
Number of HSP's gapped (non-prelim): 148
length of query: 258
length of database: 59,974,054
effective HSP length: 108
effective length of query: 150
effective length of database: 42,240,346
effective search space: 6336051900
effective search space used: 6336051900
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)