BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0207.10
(325 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GARP_PLAFF (P13816) Glutamic acid-rich protein precursor 62 3e-09
NFM_RAT (P12839) Neurofilament triplet M protein (160 kDa neurof... 55 3e-07
NFM_MOUSE (P08553) Neurofilament triplet M protein (160 kDa neur... 54 5e-07
UBF1_RAT (P25977) Nucleolar transcription factor 1 (Upstream bin... 54 7e-07
UBF1_HUMAN (P17480) Nucleolar transcription factor 1 (Upstream b... 54 7e-07
NFM_BOVIN (O77788) Neurofilament triplet M protein (160 kDa neur... 54 7e-07
UBF1_XENLA (P25979) Nucleolar transcription factor 1 (Upstream b... 53 1e-06
AT7A_RAT (P70705) Copper-transporting ATPase 1 (EC 3.6.3.4) (Cop... 53 1e-06
Y5G8_ENCCU (Q8STA9) Hypothetical protein ECU05_1680/ECU11_0050 52 2e-06
RPG1_MOUSE (Q9EPQ2) X-linked retinitis pigmentosa GTPase regulat... 52 2e-06
TONB_HELPY (O25899) TonB protein 52 2e-06
ABRA_PLAFC (P22620) 101 kDa malaria antigen (P101) (Acidic basic... 51 3e-06
WD43_MOUSE (Q6ZQL4) WD-repeat protein 43 (Fragment) 51 4e-06
NFM_HUMAN (P07197) Neurofilament triplet M protein (160 kDa neur... 51 4e-06
NAB3_YEAST (P38996) Nuclear polyadenylated RNA-binding protein 3 50 6e-06
TONB_HELPJ (Q9ZJP4) TonB protein 50 8e-06
NFM_CHICK (P16053) Neurofilament triplet M protein (160 kDa neur... 50 8e-06
UBF1_MOUSE (P25976) Nucleolar transcription factor 1 (Upstream b... 50 1e-05
NSB1_MOUSE (Q9JL35) Nucleosome binding protein 1 (Nucleosome bin... 50 1e-05
CNG4_BOVIN (Q28181) 240 kDa protein of rod photoreceptor CNG-cha... 50 1e-05
>GARP_PLAFF (P13816) Glutamic acid-rich protein precursor
Length = 678
Score = 61.6 bits (148), Expect = 3e-09
Identities = 74/288 (25%), Positives = 133/288 (45%), Gaps = 39/288 (13%)
Query: 3 EEAKQLKKDASVHHDEPPKAESKPKE--KPEEEKKGEKSVEEKKDPKPPSPCVLFVDLHC 60
EE K+ + H +E K E KE K +E K K + KKD
Sbjct: 382 EEHKEGEHKEGEHKEEEHKEEEHKKEEHKSKEHKSKGKKDKGKKDK-------------- 427
Query: 61 VGCARKIEKCIMKLRGVERVLIDMAKKEVMIKGIVEPKAICNI--ITKKTKRLAKVISPL 118
G +K +K +K V+ V+ D K V I + E K C IT +++ L++ L
Sbjct: 428 -GKHKKAKKEKVKKHVVKNVIEDEDKDGVEIINL-EDKEACEEQHITVESRPLSQPQCKL 485
Query: 119 PEAEGEPVPEIVNSQVSEPVTVELNVNMHCEACAEQLKGKILKMRGV------QTAVAKL 172
+ E E + + S+V E N+++ EQL G I ++ V + +AK+
Sbjct: 486 ID-EPEQLTLMDKSKVEEK-----NLSIQ-----EQLIGTIGRVNVVPRRDNHKKKMAKI 534
Query: 173 STGKVIVTGTMDANKLVEYVYRRTKKLAKIIPQPEPELELEPEPEPEPETEPGQKVEDKD 232
++ +D + + + ++ +K + + E E+E + E E E E E ++ E+++
Sbjct: 535 EEAELQKQKHVDKEEDKKEESKEVQEESKEVQEDEEEVEEDEEEEEEEEEEEEEEEEEEE 594
Query: 233 TDEKPEEKKVENSEMKEEGGDDKNENKEEKSGEEGEEEEADREVDGDQ 280
+E+ EE++ E+ + EE DD E++++ +E + EE D E D D+
Sbjct: 595 EEEEEEEEEEEDED--EEDEDDAEEDEDDAEEDEDDAEEDDDEEDDDE 640
Score = 34.3 bits (77), Expect = 0.44
Identities = 25/91 (27%), Positives = 45/91 (48%), Gaps = 3/91 (3%)
Query: 197 KKLAKIIPQPEPELELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVENSEMKE--EGGDD 254
KK K + + E + + + + + + +K K+ K ++KK ENSE+ + G
Sbjct: 120 KKDKKEKKHKKDKKEKKEKKDKKEKKDKKEKKHKKEKKHKKDKKKKENSEVMSLYKTGQH 179
Query: 255 KNENKEEKSGEEGEEEEADREVDGDQNGMML 285
K +N E GEE +EE E++ + G +L
Sbjct: 180 KPKNATE-HGEENLDEEMVSEINNNAQGGLL 209
Score = 33.9 bits (76), Expect = 0.57
Identities = 17/68 (25%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 213 EPEPEPEPETEPGQKVEDKDTDEKP----EEKKVENSEMKEEGGDDKNENKEEKSGEEGE 268
E + E + E + ++ K+ +K E++K+E + K+E + K + KE K E+ E
Sbjct: 245 EDKKEDHQQEEMLKTLDKKERKQKEKEMKEQEKIEKKKKKQEEKEKKKQEKERKKQEKKE 304
Query: 269 EEEADREV 276
++ ++E+
Sbjct: 305 RKQKEKEM 312
Score = 33.5 bits (75), Expect = 0.74
Identities = 21/86 (24%), Positives = 45/86 (51%), Gaps = 1/86 (1%)
Query: 197 KKLAKIIPQPEPELELEPEPEPEPETEPGQKVEDKDTD-EKPEEKKVENSEMKEEGGDDK 255
+++ K + + E + + + E E + +K E+K+ ++ E KK E E K++ + K
Sbjct: 254 EEMLKTLDKKERKQKEKEMKEQEKIEKKKKKQEEKEKKKQEKERKKQEKKERKQKEKEMK 313
Query: 256 NENKEEKSGEEGEEEEADREVDGDQN 281
+ K EK ++ EE+E ++ +N
Sbjct: 314 KQKKIEKERKKKEEKEKKKKKHDKEN 339
Score = 33.5 bits (75), Expect = 0.74
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 210 LELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVENSE-MKEEGGDDKNENKEEKSGEEGE 268
L+ + + E E + +K+E K ++ +EKK + E K+E + K + KE K ++ E
Sbjct: 260 LDKKERKQKEKEMKEQEKIEKKKKKQEEKEKKKQEKERKKQEKKERKQKEKEMKKQKKIE 319
Query: 269 EEEADRE 275
+E +E
Sbjct: 320 KERKKKE 326
Score = 31.2 bits (69), Expect = 3.7
Identities = 20/67 (29%), Positives = 30/67 (43%), Gaps = 8/67 (11%)
Query: 216 PEPEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEKSGEEGEEEEADRE 275
P P P T+ E K+ + K EE K EG + E+KEE+ EE ++E +
Sbjct: 360 PLPSPLTDVTTPEEHKEGEHKEEEHK--------EGEHKEGEHKEEEHKEEEHKKEEHKS 411
Query: 276 VDGDQNG 282
+ G
Sbjct: 412 KEHKSKG 418
Score = 30.8 bits (68), Expect = 4.8
Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 230 DKDTDEKPEEKKVENSEMKEEGGDDKNENKEEKSGEEGEEEEADREVDGDQNGMMLNI 287
DK D+K ++ K + E KE+ DK E K++K + +E++ ++ +N ++++
Sbjct: 118 DKKKDKKEKKHKKDKKEKKEK--KDKKEKKDKKEKKHKKEKKHKKDKKKKENSEVMSL 173
Score = 30.4 bits (67), Expect = 6.3
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 205 QPEPELELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEKSG 264
+ E + E + + E + E ED D DE +E+ E E +EE + K + K+
Sbjct: 617 EDEDDAEEDEDDAEEDDDEEDDDEEDDDEDEDEDEEDEEEEEEEEEESEKKIKRNLRKNA 676
Query: 265 E 265
+
Sbjct: 677 K 677
Score = 30.4 bits (67), Expect = 6.3
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 202 IIPQPEPELELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEE 261
++P P P L PE E K E+ E E + E +EE +++++KE
Sbjct: 358 MVPLPSP---LTDVTTPEEHKEGEHKEEEHKEGEHKEGEHKEEEHKEEEHKKEEHKSKEH 414
Query: 262 KSGEEGEEEEADR 274
KS + ++ + D+
Sbjct: 415 KSKGKKDKGKKDK 427
>NFM_RAT (P12839) Neurofilament triplet M protein (160 kDa
neurofilament protein) (Neurofilament medium
polypeptide) (NF-M)
Length = 845
Score = 54.7 bits (130), Expect = 3e-07
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 205 QPEPELELEPEPEPEP-ETEPGQKVEDKD-TDEKPEEKKVENSEMKEEGGDDKNENKEEK 262
+ EPE+E P PE E E G+K E+++ +E+ EE + S+ EEGG +K + E+
Sbjct: 494 EEEPEVEKSPVKSPEAKEEEEGEKEEEEEGQEEEEEEDEGVKSDQAEEGGSEKEGSSEKD 553
Query: 263 SGEEGEEEEADREVDGDQ 280
GE+ EE E + E +G++
Sbjct: 554 EGEQEEEGETEAEGEGEE 571
Score = 44.7 bits (104), Expect = 3e-04
Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 10/102 (9%)
Query: 203 IPQPEPELELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEK 262
+ PE + E E E E E E GQ+ E+++ DE + + E ++EG +K+E ++E+
Sbjct: 504 VKSPEAKEEEEGEKE---EEEEGQE-EEEEEDEGVKSDQAEEGGSEKEGSSEKDEGEQEE 559
Query: 263 SGE---EGEEEEADREVDGDQNGMMLNIDEGSMKRMMYYYQP 301
GE EGE EEA+ + + G ++E ++K + +P
Sbjct: 560 EGETEAEGEGEEAEAKEEKKTEG---KVEEMAIKEEIKVEKP 598
Score = 42.0 bits (97), Expect = 0.002
Identities = 35/117 (29%), Positives = 52/117 (43%), Gaps = 12/117 (10%)
Query: 167 TAVAKLSTGKVIVTGTMDANKLVEYVYRRTKKLAKIIPQPEPELELEPEPEPEPETEPGQ 226
T +K+ KV +K VE + TK + + E+E E E
Sbjct: 430 TISSKIQKTKVEAPKLKVQHKFVEEIIEETK-----VEDEKSEMEDALTVIAE-ELAASA 483
Query: 227 KVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEKSGEEGEEEEADREVDGDQNGM 283
K E ++ +EK EE +VE S +K E KEE+ GE+ EEEE E + + G+
Sbjct: 484 KEEKEEAEEKEEEPEVEKSPVKSP------EAKEEEEGEKEEEEEGQEEEEEEDEGV 534
Score = 41.2 bits (95), Expect = 0.004
Identities = 71/290 (24%), Positives = 123/290 (41%), Gaps = 32/290 (11%)
Query: 1 MGEEAKQLKKDASVHHDEPPKAESKPKEKPE--EEKKGEKSVEEK-KDPKPPSPCVLFVD 57
+ AK+ K++A +E P+ E P + PE EE++GEK EE+ ++ + + D
Sbjct: 479 LAASAKEEKEEAE-EKEEEPEVEKSPVKSPEAKEEEEGEKEEEEEGQEEEEEEDEGVKSD 537
Query: 58 LHCVGCARKIEKCIMKLRGVERVLIDM----------AKKEVMIKGIVEPKAICNIITKK 107
G + K E K G + + AK+E +G VE AI I K
Sbjct: 538 QAEEGGSEK-EGSSEKDEGEQEEEGETEAEGEGEEAEAKEEKKTEGKVEEMAIKEEI--K 594
Query: 108 TKRLAKVISPLPEA---EGEPVPEIV--NSQVSEPVTVELNVNMHCEACAEQ-LKGKILK 161
++ K SP+P++ E +P PE + E VE + E+ E+ ++ K K
Sbjct: 595 VEKPEKAKSPVPKSPVEEVKPKPEAKAGKDEQKEEEKVEEKKEVAKESPKEEKVEKKEEK 654
Query: 162 MRGVQTAVAKLSTGKVIVTGTMDANKLVEYVYRRTKKLAKIIPQPEPELELEPEPEPEPE 221
+ V S K K VE + TK + + + E + + + + + +
Sbjct: 655 PKDVPDKKKAESPVK---------EKAVEEMITITKSVKVSLEKDTKEEKPQQQEKVKEK 705
Query: 222 TEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEKSGEEGEEEE 271
E E++ D+ P+E K E+ + E + E +E + G+EEE
Sbjct: 706 AEEEGGSEEEVGDKSPQESKKEDIAINGEVEGKEEEEQETQEKGSGQEEE 755
Score = 38.9 bits (89), Expect = 0.018
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 197 KKLAKIIPQPEPELELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDKN 256
++LA + + E E E E EPE E P + E K+ +E +E++ E E +EE +
Sbjct: 477 EELAASAKEEKEEAE-EKEEEPEVEKSPVKSPEAKEEEEGEKEEEEEGQEEEEEEDEGV- 534
Query: 257 ENKEEKSGEEGEEEEADREVD-GDQ 280
K +++ E G E+E E D G+Q
Sbjct: 535 --KSDQAEEGGSEKEGSSEKDEGEQ 557
Score = 36.6 bits (83), Expect = 0.088
Identities = 24/71 (33%), Positives = 42/71 (58%), Gaps = 6/71 (8%)
Query: 206 PEPELELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEKSGE 265
P P+ +E E +P+PE + G+ +++ +EK EEKK KE ++K E KEEK +
Sbjct: 604 PVPKSPVE-EVKPKPEAKAGK--DEQKEEEKVEEKK---EVAKESPKEEKVEKKEEKPKD 657
Query: 266 EGEEEEADREV 276
++++A+ V
Sbjct: 658 VPDKKKAESPV 668
Score = 32.0 bits (71), Expect = 2.2
Identities = 17/61 (27%), Positives = 31/61 (49%)
Query: 217 EPEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEKSGEEGEEEEADREV 276
+PE P K ++ KPE K ++ + +EE ++K E +E EE E++ ++
Sbjct: 597 KPEKAKSPVPKSPVEEVKPKPEAKAGKDEQKEEEKVEEKKEVAKESPKEEKVEKKEEKPK 656
Query: 277 D 277
D
Sbjct: 657 D 657
Score = 31.2 bits (69), Expect = 3.7
Identities = 64/265 (24%), Positives = 112/265 (42%), Gaps = 35/265 (13%)
Query: 3 EEAKQLKKDASVHHDEPPKAESKPKEKPE---------EEKKGEKSVEEKKDPKPPSPCV 53
+E +Q ++ + E +AE+K ++K E EE K EK E+ K P P SP
Sbjct: 553 DEGEQEEEGETEAEGEGEEAEAKEEKKTEGKVEEMAIKEEIKVEKP-EKAKSPVPKSPVE 611
Query: 54 LFVDLHCVGCARKIEKCIMKLRGVERVLIDMAKKEVMIKGIVEPKAICNIITKKTKRLAK 113
+ +K K+ + V + K+E + K +PK ++ KK K
Sbjct: 612 EVKPKPEAKAGKDEQKEEEKVEEKKEVAKESPKEEKVEKKEEKPK---DVPDKK-----K 663
Query: 114 VISPLPEAEGEPVPEIVNSQVSEPVTVELNVNMHCEACAEQLKGKILKMRGVQTAVAKLS 173
SP+ E + V E++ S V++E + E++K K + G + V S
Sbjct: 664 AESPVKE---KAVEEMITITKSVKVSLEKDTKEEKPQQQEKVKEKAEEEGGSEEEVGDKS 720
Query: 174 TGK-----VIVTGTMDANKLVEYVYRRTKKLAKIIPQPEPELELEPEPEPEPETEPGQKV 228
+ + + G ++ + E + T++ K Q E + + + P E +K
Sbjct: 721 PQESKKEDIAINGEVEGKEEEE---QETQE--KGSGQEEEKGVVTNGLDVSPAEE--KKG 773
Query: 229 EDKDTDEKPEEKKVENSEMKEEGGD 253
ED+ D+ KKVE ++ EGGD
Sbjct: 774 EDRSDDKVVVTKKVE--KITSEGGD 796
>NFM_MOUSE (P08553) Neurofilament triplet M protein (160 kDa
neurofilament protein) (Neurofilament medium
polypeptide) (NF-M)
Length = 848
Score = 53.9 bits (128), Expect = 5e-07
Identities = 30/78 (38%), Positives = 47/78 (59%), Gaps = 4/78 (5%)
Query: 205 QPEPELELEP--EPEPEPETEPGQKVEDKD-TDEKPEEKKVENSEMKEEGGDDKNENKEE 261
+ EPE E P PE + E E G+K E+++ +E+ EE + S+ EEGG +K + E+
Sbjct: 494 EEEPEAEKSPVKSPEAKEEEEEGEKEEEEEGQEEEEEEDEGVKSDQAEEGGSEKEGSSEK 553
Query: 262 KSGEEGEEEEADREVDGD 279
GE+ EEEE + E +G+
Sbjct: 554 DEGEQ-EEEEGETEAEGE 570
Score = 49.3 bits (116), Expect = 1e-05
Identities = 70/290 (24%), Positives = 118/290 (40%), Gaps = 29/290 (10%)
Query: 1 MGEEAKQLKKDASVHHDEPPKAESKPKEKPE---EEKKGEKSVEEK-------KDPKPPS 50
+ AK+ K++A +E P+AE P + PE EE++GEK EE+ +D S
Sbjct: 479 LAASAKEEKEEAE-EKEEEPEAEKSPVKSPEAKEEEEEGEKEEEEEGQEEEEEEDEGVKS 537
Query: 51 PCVLFVDLHCVGCARKIEKCIMKLRGVERVLID----MAKKEVMIKGIVEPKAICNIITK 106
G + K E + G + AK+E I+G VE A+ I
Sbjct: 538 DQAEEGGSEKEGSSEKDEGEQEEEEGETEAEGEGEEAEAKEEKKIEGKVEEVAVKEEI-- 595
Query: 107 KTKRLAKVISPLPEAEGEPVPEIVNSQVSEPVTVELNVNMHCEACAEQLKGKILKMRGVQ 166
K ++ K SP+P++ E V ++ + E E E+ K ++ K +
Sbjct: 596 KVEKPEKAKSPMPKSPVEEVKPKPEAKAGKGEQKE-------EEKVEEEKKEVTKESPKE 648
Query: 167 TAVAKLSTGKVIVTGTMDAN-----KLVEYVYRRTKKLAKIIPQPEPELELEPEPEPEPE 221
V K V A K VE V +K + + + E + +P+ + + +
Sbjct: 649 EKVEKKEEKPKDVADKKKAESPVKEKAVEEVITISKSVKVSLEKDTKEEKPQPQEKVKEK 708
Query: 222 TEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEKSGEEGEEEE 271
E E++ +D P+E K E+ + E + E +E + G EEE
Sbjct: 709 AEEEGGSEEEGSDRSPQESKKEDIAINGEVEGKEEEEQETQEKGSGREEE 758
Score = 41.2 bits (95), Expect = 0.004
Identities = 30/116 (25%), Positives = 52/116 (43%), Gaps = 1/116 (0%)
Query: 167 TAVAKLSTGKVIVTGTMDANKLVEYVYRRTKKLAKIIPQPEPELELEPEPEPEPETEPGQ 226
T +K+ KV +K VE + TK + + E L E E +
Sbjct: 430 TISSKIQKTKVEAPKLKVQHKFVEEIIEETK-VEDEKSEMEETLTAIAEELAASAKEEKE 488
Query: 227 KVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEKSGEEGEEEEADREVDGDQNG 282
+ E+K+ + + E+ V++ E KEE + + E +EE EE EE+E + ++ G
Sbjct: 489 EAEEKEEEPEAEKSPVKSPEAKEEEEEGEKEEEEEGQEEEEEEDEGVKSDQAEEGG 544
Score = 39.7 bits (91), Expect = 0.010
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 23/115 (20%)
Query: 184 DANKLVEYVYRRTKKLAKIIPQPEPELELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVE 243
+ +++ E + ++LA + + E E E E EPE E P + E K+ +E+ E+
Sbjct: 464 EKSEMEETLTAIAEELAASAKEEKEEAE-EKEEEPEAEKSPVKSPEAKEEEEEGEK---- 518
Query: 244 NSEMKEEGGDDKNENKE------------EKSG----EEGEEEEADREVDGDQNG 282
E +EEG +++ E E EK G +EGE+EE + E + + G
Sbjct: 519 --EEEEEGQEEEEEEDEGVKSDQAEEGGSEKEGSSEKDEGEQEEEEGETEAEGEG 571
Score = 30.8 bits (68), Expect = 4.8
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 33/110 (30%)
Query: 207 EPELELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVEN--SEMKE--------------- 249
+P + + + + P KV+ K +E EE KVE+ SEM+E
Sbjct: 426 QPSVTISSKIQKTKVEAPKLKVQHKFVEEIIEETKVEDEKSEMEETLTAIAEELAASAKE 485
Query: 250 --EGGDDKNE--------------NKEEKSGEEGEEEEADREVDGDQNGM 283
E ++K E +EE+ GE+ EEEE E + + G+
Sbjct: 486 EKEEAEEKEEEPEAEKSPVKSPEAKEEEEEGEKEEEEEGQEEEEEEDEGV 535
>UBF1_RAT (P25977) Nucleolar transcription factor 1 (Upstream
binding factor 1) (UBF-1)
Length = 764
Score = 53.5 bits (127), Expect = 7e-07
Identities = 32/105 (30%), Positives = 54/105 (50%), Gaps = 6/105 (5%)
Query: 190 EYVYRRTKKLAKII-PQPEPELELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVENSEMK 248
EY+ + K + K+ P P+ + + E+E ED D D++ EE+ EN +
Sbjct: 647 EYISNKRKNMTKLRGPNPKSS---RTTLQSKSESEEDDDEEDDDDDDEEEEEDDENGDSS 703
Query: 249 EEGGDDKNENKEEKS--GEEGEEEEADREVDGDQNGMMLNIDEGS 291
E+GGD + E++S G+E E+++ D + D D + N EGS
Sbjct: 704 EDGGDSSESSSEDESEDGDENEDDDDDEDDDEDDDEDEDNESEGS 748
Score = 32.3 bits (72), Expect = 1.7
Identities = 15/52 (28%), Positives = 25/52 (47%)
Query: 215 EPEPEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEKSGEE 266
E E E+E G + ED D DE +E E+ + + EG + + + S +
Sbjct: 711 ESSSEDESEDGDENEDDDDDEDDDEDDDEDEDNESEGSSSSSSSSGDSSDSD 762
>UBF1_HUMAN (P17480) Nucleolar transcription factor 1 (Upstream
binding factor 1) (UBF-1) (Autoantigen NOR-90)
Length = 764
Score = 53.5 bits (127), Expect = 7e-07
Identities = 32/105 (30%), Positives = 54/105 (50%), Gaps = 6/105 (5%)
Query: 190 EYVYRRTKKLAKII-PQPEPELELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVENSEMK 248
EY+ + K + K+ P P+ + + E+E + ++ D DE EE+ EN +
Sbjct: 647 EYISNKRKSMTKLRGPNPKSS---RTTLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSS 703
Query: 249 EEGGDDKNENKEEKS--GEEGEEEEADREVDGDQNGMMLNIDEGS 291
E+GGD + E++S G+E EE++ D + D D + N EGS
Sbjct: 704 EDGGDSSESSSEDESEDGDENEEDDEDEDDDEDDDEDEDNESEGS 748
Score = 34.7 bits (78), Expect = 0.33
Identities = 21/80 (26%), Positives = 36/80 (44%), Gaps = 5/80 (6%)
Query: 207 EPELELEPEPEPEPETEPGQKVED-----KDTDEKPEEKKVENSEMKEEGGDDKNENKEE 261
E + + E E E E + E G ED + + E E EN E E+ DD++++++E
Sbjct: 682 EEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDDDEDE 741
Query: 262 KSGEEGEEEEADREVDGDQN 281
+ EG + D +
Sbjct: 742 DNESEGSSSSSSSSGDSSDS 761
Score = 30.8 bits (68), Expect = 4.8
Identities = 14/52 (26%), Positives = 25/52 (47%)
Query: 215 EPEPEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEKSGEE 266
E E E+E G + E+ D DE +E E+ + + EG + + + S +
Sbjct: 711 ESSSEDESEDGDENEEDDEDEDDDEDDDEDEDNESEGSSSSSSSSGDSSDSD 762
>NFM_BOVIN (O77788) Neurofilament triplet M protein (160 kDa
neurofilament protein) (Neurofilament medium
polypeptide) (NF-M) (Fragment)
Length = 810
Score = 53.5 bits (127), Expect = 7e-07
Identities = 23/63 (36%), Positives = 41/63 (64%)
Query: 218 PEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEKSGEEGEEEEADREVD 277
PE + E G+K E++ +E+ EE++ S+ EEGG +K + E++ GE+ EE E + E +
Sbjct: 404 PELKEEEGEKEEEEGQEEEEEEEEAAKSDQAEEGGSEKEGSSEKEEGEQEEEGETEAEGE 463
Query: 278 GDQ 280
G++
Sbjct: 464 GEE 466
Score = 47.0 bits (110), Expect = 6e-05
Identities = 65/275 (23%), Positives = 110/275 (39%), Gaps = 16/275 (5%)
Query: 3 EEAKQLKKDASVHHDEPPKAESKPKEKPEEEKKGEKSVEEKKDPKPPSPCVLFVDLHCVG 62
EE ++ +++ P KA + ++ E EK+ E+ EE+++ + + D G
Sbjct: 382 EEKEEAEEEVVAAKKSPVKATAPELKEEEGEKEEEEGQEEEEEEEEAAKS----DQAEEG 437
Query: 63 CARKIEKCIMKLRGVERVLIDMAKKEVMIKGIVEPKAICNIITKKTKRLAKVISPLPEAE 122
+ K E K G + + E +G E A KK + A+ ++P E
Sbjct: 438 GSEK-EGSSEKEEGEQE-----EEGETEAEGEGEEAAAEAKEEKKMEEKAEEVAPKEELA 491
Query: 123 GEPV---PEIVNSQVSEPVTVELNVNMHCEACAEQLKGKILKMRGVQTAVAKLSTGKVIV 179
E PE S V++ T + EA + + K K ++ VAK T K
Sbjct: 492 AEAKVEKPEKAKSPVAKSPTTKSPTAKSPEAKSPEAKSPTAKSPTAKSPVAKSPTAKSPE 551
Query: 180 TGTMDANKLVEYVYRRTKKLAKIIPQPEPELELEPEPEPEPET-EPGQKVED--KDTDEK 236
+ +A AK P E++P+ E E E +KVE+ K+ E
Sbjct: 552 AKSPEAKSPTAKSPTAKSPAAKSPAPKSPVEEVKPKAEAGAEKGEQKEKVEEEKKEAKES 611
Query: 237 PEEKKVENSEMKEEGGDDKNENKEEKSGEEGEEEE 271
P+E+K E E K + +K + + E +EE
Sbjct: 612 PKEEKAEKKEEKPKDVPEKKKAESPVKAESPVKEE 646
Score = 38.9 bits (89), Expect = 0.018
Identities = 29/122 (23%), Positives = 52/122 (41%), Gaps = 3/122 (2%)
Query: 161 KMRGVQTAVAKLSTGKVIVTGTMDANKLVEYVYRRTKKLAKIIPQPEPELELEPEPEPEP 220
K++ + KL V ++ K+ + + L I + ++ E + E
Sbjct: 320 KIQKTKVEAPKLKVQHKFVEEIIEETKVEDEKSEMEEALTAITEELAVSVKEEVKEEEAE 379
Query: 221 ETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEKSGEEGEEEEADREVDGDQ 280
E E ++ E++ K K E+KEE G+ + E +E EE EEEEA + ++
Sbjct: 380 EKEEKEEAEEEVVAAKKSPVKATAPELKEEEGEKEEEEGQE---EEEEEEEAAKSDQAEE 436
Query: 281 NG 282
G
Sbjct: 437 GG 438
Score = 37.4 bits (85), Expect = 0.051
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 197 KKLAKIIPQPEPELELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGG--DD 254
KK + P E P + E K E+K +++ E++KVE KEEGG +
Sbjct: 631 KKAESPVKAESPVKEEVPAKPVKVSPEKEAKEEEKPQEKEKEKEKVEEVGGKEEGGLKES 690
Query: 255 KNENKEEKSGEEGEEEEADREVDG----DQNGMMLN 286
+ E+ EG+EEE + + G ++ G++ N
Sbjct: 691 RKEDIAINGEVEGKEEEQETKEKGSGGEEEKGVVTN 726
Score = 36.6 bits (83), Expect = 0.088
Identities = 28/108 (25%), Positives = 49/108 (44%), Gaps = 12/108 (11%)
Query: 184 DANKLVEYVYRRTKKLAKIIPQPEPELELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVE 243
+ +++ E + T++LA + + E E E + E E E + E K E
Sbjct: 350 EKSEMEEALTAITEELAVSVKEEVKEEEAEEKEEKEEAEEEVVAAKKSPVKATAPELKEE 409
Query: 244 NSEMKEEGGDDKNENKEEKS----GEEG--------EEEEADREVDGD 279
E +EE G ++ E +EE + EEG E+EE ++E +G+
Sbjct: 410 EGEKEEEEGQEEEEEEEEAAKSDQAEEGGSEKEGSSEKEEGEQEEEGE 457
Score = 36.6 bits (83), Expect = 0.088
Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 187 KLVEYVYRRTKKLAKIIPQP-----EPELELEPEPEPEPETEPGQKVEDKDTDEKPEEKK 241
KL+E R A I P +P + + + + P KV+ K +E EE K
Sbjct: 287 KLLEGEETRFSTFAGSITGPLYTHRQPSIAISSKIQKTKVEAPKLKVQHKFVEEIIEETK 346
Query: 242 VEN--SEMKEE--------GGDDKNENKEEKSGEEGEEEEADREV 276
VE+ SEM+E K E KEE++ E+ E+EEA+ EV
Sbjct: 347 VEDEKSEMEEALTAITEELAVSVKEEVKEEEAEEKEEKEEAEEEV 391
Score = 34.7 bits (78), Expect = 0.33
Identities = 29/89 (32%), Positives = 37/89 (40%), Gaps = 10/89 (11%)
Query: 197 KKLAKIIPQPEPELELEPEPEPEPETEPGQKVEDKDT--DEKPEEKKVENSEMKEEGGDD 254
K A + + E E E E E E E E K + + EK + E E +EEG +
Sbjct: 400 KATAPELKEEEGEKEEEEGQEEEEEEEEAAKSDQAEEGGSEKEGSSEKEEGEQEEEGETE 459
Query: 255 KN--------ENKEEKSGEEGEEEEADRE 275
E KEEK EE EE A +E
Sbjct: 460 AEGEGEEAAAEAKEEKKMEEKAEEVAPKE 488
>UBF1_XENLA (P25979) Nucleolar transcription factor 1 (Upstream
binding factor-1) (UBF-1) (xUBF-1)
Length = 677
Score = 52.8 bits (125), Expect = 1e-06
Identities = 31/89 (34%), Positives = 49/89 (54%), Gaps = 3/89 (3%)
Query: 195 RTKKLAKI-IPQPEPELELEPEPEPEPETEPGQKVEDKDTDE-KPEEKKVENSEMKEEGG 252
+ K AKI +P +P+L + + + + E + + ED D DE + +E E+ + E
Sbjct: 570 KRKSTAKIQVPVAKPKLVAQSKSDDDDEDDDDDEDEDDDDDEDEDKEDSSEDGDSSESSS 629
Query: 253 DDKNENKEEKSGEEGEEEEADREVDGDQN 281
D+ +E+ EE EEGEE+E D E D D N
Sbjct: 630 DEDSEDGEENEDEEGEEDE-DEEEDDDDN 657
Score = 33.5 bits (75), Expect = 0.74
Identities = 20/93 (21%), Positives = 40/93 (42%), Gaps = 12/93 (12%)
Query: 201 KIIPQPEPELELEPEPEPEPETEPGQKVEDKD------------TDEKPEEKKVENSEMK 248
K++ Q + + + E + + E E + + EDK+ +DE E+ + E
Sbjct: 585 KLVAQSKSDDDDEDDDDDEDEDDDDDEDEDKEDSSEDGDSSESSSDEDSEDGEENEDEEG 644
Query: 249 EEGGDDKNENKEEKSGEEGEEEEADREVDGDQN 281
EE D++ ++ + +SG + D D N
Sbjct: 645 EEDEDEEEDDDDNESGSSSSSSSSADSSDSDSN 677
>AT7A_RAT (P70705) Copper-transporting ATPase 1 (EC 3.6.3.4) (Copper
pump 1) (Menkes disease-associated protein homolog)
Length = 1492
Score = 52.8 bits (125), Expect = 1e-06
Identities = 50/219 (22%), Positives = 92/219 (41%), Gaps = 27/219 (12%)
Query: 35 KGEKSVEEKKDPKPPSPCVLFV--DLHCVGCARKIEKCIMKLRGVERVLIDMAKKEVMIK 92
K + ++K P + F +HC C IE + L+ V +++ + + ++K
Sbjct: 261 KSSEGSQQKSPAYPSDSAITFTIDGMHCKSCVSNIESALSTLQYVSSIVVSLENRSAIVK 320
Query: 93 ---GIVEPKAICNIITK------KTKRLAKVISPLPEAEGEPVPEIVNSQVSEPVTVELN 143
+V P+ + I + ++V SP + ++ + VS+P+T E+
Sbjct: 321 YNASLVTPEILRKAIEAVSPGQYRVSISSEVESPTSSPSSSSLQKMPLNLVSQPLTQEVV 380
Query: 144 VN---MHCEACAEQLKGKILKMRGVQTAVAKL--STGKV----IVTGTMDANKLVE---- 190
+N M C +C + ++G I K GV++ L STG + ++T + +E
Sbjct: 381 ININGMTCNSCVQSIEGVISKKPGVKSIHVSLTNSTGTIEYDPLLTSPEPLREAIEDMGF 440
Query: 191 --YVYRRTKKLAKIIPQPEPELELEPE-PEPEPETEPGQ 226
+ K+ +I QP E L P EPE P Q
Sbjct: 441 DAVLPADMKEPLVVIAQPSLETPLLPSTTEPENVMTPVQ 479
Score = 38.9 bits (89), Expect = 0.018
Identities = 32/139 (23%), Positives = 54/139 (38%), Gaps = 20/139 (14%)
Query: 60 CVGCARKIEKCIMKLRGVERVLIDMAKKEVM------------IKGIVEPKAICNIITKK 107
C C IE + KL+GV+R+ + + +E IK +E I K+
Sbjct: 182 CHSCTSTIEGKVGKLQGVQRIKVSLDNQEATIVYQPHLITAEEIKKQIEAVGFPAFIKKQ 241
Query: 108 TKRLAKVISPLPEAEGEPVPEIVNSQVSEP-------VTVELNVNMHCEACAEQLKGKIL 160
K L + + PV SQ P +T ++ MHC++C ++ +
Sbjct: 242 PKYLKLGAIDVERLKSTPVKSSEGSQQKSPAYPSDSAITFTID-GMHCKSCVSNIESALS 300
Query: 161 KMRGVQTAVAKLSTGKVIV 179
++ V + V L IV
Sbjct: 301 TLQYVSSIVVSLENRSAIV 319
Score = 35.8 bits (81), Expect = 0.15
Identities = 34/140 (24%), Positives = 59/140 (41%), Gaps = 22/140 (15%)
Query: 60 CVGCARKIEKCIMKLRGVERVLIDMAKKEVMIKGIVEPKAICNIITKKTKRLAKVISPLP 119
C+ C R IE+ I K+ GV + + + +K + I PK + K L + I +
Sbjct: 19 CISCVRTIEQQIGKVNGVHHIKVSLEEKSATV--IYNPK------LQTPKTLQEAIDDMG 70
Query: 120 ----EAEGEPVPEIVNSQVSEPVTVELNVNMHCEACAEQLKGKILKMR---GVQTAVAKL 172
P+P + N TV L V + ++ +LK + GV+ + +
Sbjct: 71 FDALLHNANPLPVLTN-------TVFLTVTAPLALPWDHIQSTLLKTKGVTGVKISPQQR 123
Query: 173 STGKVIVTGTMDANKLVEYV 192
S I+ + AN++VE V
Sbjct: 124 SAVVTIIPSVVSANQIVELV 143
Score = 30.4 bits (67), Expect = 6.3
Identities = 24/121 (19%), Positives = 50/121 (40%), Gaps = 20/121 (16%)
Query: 60 CVGCARKIEKCIMKLRGVERVLIDMAKKEVMIK---GIVEPKAICNIITKKTKRLAKVIS 116
C C IE+ + + G+ VL+ + + ++ +++P+ I +I + L
Sbjct: 491 CASCVANIERNLRREEGIYSVLVALMAGKAEVRYNPAVIQPRVIAELI----RELGFGAV 546
Query: 117 PLPEA-EGEPVPEIVNSQVSEPVTVELNVNMHCEACAEQLKGKILKMRGVQTAVAKLSTG 175
+ A EG + E+V M C +C +++ + K +G+ L+T
Sbjct: 547 VMENAGEGNGILELVVR------------GMTCASCVHKIESTLTKHKGIFYCSVALATN 594
Query: 176 K 176
K
Sbjct: 595 K 595
>Y5G8_ENCCU (Q8STA9) Hypothetical protein ECU05_1680/ECU11_0050
Length = 612
Score = 52.4 bits (124), Expect = 2e-06
Identities = 34/116 (29%), Positives = 58/116 (49%), Gaps = 12/116 (10%)
Query: 186 NKLVEYVYRRTKKLAKIIPQPEPELELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVENS 245
NK+ V R ++ + E E + E E + E E ++ + K +EK EEKK +
Sbjct: 295 NKVANVVKERQRR-----EMEKKEEEKKKEEEKKKEEEKRKEEKKKKKEEKKEEKKKKKE 349
Query: 246 EMKEEGGDDKNENKEEKSGEEGEEEEAD-------REVDGDQNGMMLNIDEGSMKR 294
E KEE ++K E K+E+ EE +EE+ + RE + + M +++ G +R
Sbjct: 350 EKKEEKKEEKKEEKKEEKKEEKKEEKKEEKSGKSLREGEASEEAEMPSVEVGGARR 405
Score = 45.8 bits (107), Expect = 1e-04
Identities = 33/106 (31%), Positives = 59/106 (55%), Gaps = 5/106 (4%)
Query: 194 RRTKKLAKIIPQPEPELELEPEPEPEPETEPGQKVEDKDTDEK---PEEKKVENSEMKEE 250
R K+A ++ + + E+E + E + + E +K E+K +EK EEKK E + KEE
Sbjct: 292 RYINKVANVVKERQRR-EMEKKEEEKKKEEEKKKEEEKRKEEKKKKKEEKKEEKKKKKEE 350
Query: 251 GGDDKNENKEEKSGEEGEEEEADREVDGDQNGMMLNIDEGSMKRMM 296
++K E K+E+ EE +EE+ + + + +++G L E S + M
Sbjct: 351 KKEEKKEEKKEEKKEEKKEEKKEEKKE-EKSGKSLREGEASEEAEM 395
Score = 33.1 bits (74), Expect = 0.97
Identities = 15/47 (31%), Positives = 29/47 (60%)
Query: 1 MGEEAKQLKKDASVHHDEPPKAESKPKEKPEEEKKGEKSVEEKKDPK 47
M ++ ++ KK+ +E + E K K+K E++++ +K EEKK+ K
Sbjct: 309 MEKKEEEKKKEEEKKKEEEKRKEEKKKKKEEKKEEKKKKKEEKKEEK 355
Score = 32.7 bits (73), Expect = 1.3
Identities = 15/45 (33%), Positives = 28/45 (61%)
Query: 3 EEAKQLKKDASVHHDEPPKAESKPKEKPEEEKKGEKSVEEKKDPK 47
+E ++ K++ +E + + K KE+ +EEKK EK E+K++ K
Sbjct: 324 KEEEKRKEEKKKKKEEKKEEKKKKKEEKKEEKKEEKKEEKKEEKK 368
Score = 32.0 bits (71), Expect = 2.2
Identities = 15/45 (33%), Positives = 27/45 (59%)
Query: 3 EEAKQLKKDASVHHDEPPKAESKPKEKPEEEKKGEKSVEEKKDPK 47
EE K+ +++ + K E K ++K ++E+K E+ EEKK+ K
Sbjct: 319 EEEKKKEEEKRKEEKKKKKEEKKEEKKKKKEEKKEEKKEEKKEEK 363
Score = 32.0 bits (71), Expect = 2.2
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 3 EEAKQLKKDASVHHDEPPKAESKPKEKPE--EEKKGEKSVEEKKDPK 47
+E K+ KK+ + K E K ++K E EEKK EK E+K++ K
Sbjct: 330 KEEKKKKKEEKKEEKKKKKEEKKEEKKEEKKEEKKEEKKEEKKEEKK 376
Score = 31.2 bits (69), Expect = 3.7
Identities = 31/111 (27%), Positives = 43/111 (37%), Gaps = 13/111 (11%)
Query: 184 DANKLVEYVYRRTKKLAKIIPQPEPELELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVE 243
+ K E + KK K + E + + E + E + E + +K E+K +EK EEKK E
Sbjct: 320 EEKKKEEEKRKEEKKKKKEEKKEEKKKKKEEKKEEKKEEKKEEKKEEKK-EEKKEEKKEE 378
Query: 244 NSEMKEEGGDDKNENKEEKSGEEGEEEEADREVDGDQNGMMLNIDEGSMKR 294
S K + GE EE E G EG KR
Sbjct: 379 KS------------GKSLREGEASEEAEMPSVEVGGARRKTGKKSEGGRKR 417
Score = 31.2 bits (69), Expect = 3.7
Identities = 21/45 (46%), Positives = 25/45 (54%), Gaps = 3/45 (6%)
Query: 3 EEAKQLKKDASVHHDEPPKAESKPKEKPEEEKKGEKSVEEKKDPK 47
EE K+ KK E K E K ++K EEKK EK EEKK+ K
Sbjct: 338 EEKKEEKKKKKEEKKEEKKEEKKEEKK--EEKKEEKK-EEKKEEK 379
Score = 30.4 bits (67), Expect = 6.3
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 3 EEAKQLKKDASVHHDEPPKAESKPKEKPEEEKKGEKSVEEKKDPK 47
E+ K+ +K + K + K ++K E++KK E+ EEKK+ K
Sbjct: 315 EKKKEEEKKKEEEKRKEEKKKKKEEKKEEKKKKKEEKKEEKKEEK 359
>RPG1_MOUSE (Q9EPQ2) X-linked retinitis pigmentosa GTPase
regulator-interacting protein 1 (RPGR-interacting
protein 1)
Length = 1331
Score = 52.4 bits (124), Expect = 2e-06
Identities = 27/70 (38%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 207 EPELELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEKSGEE 266
E E+E E E E E E E ++ E+++ +E+ EE++ E + +EE D+K E +EE+ EE
Sbjct: 923 EEEVE-EEEEEEEEEEEVKEEKEEEEEEEREEEEEKEEEKEEEEEEDEKEEEEEEEEEEE 981
Query: 267 GEEEEADREV 276
EEE+ +++V
Sbjct: 982 EEEEDENKDV 991
Score = 48.5 bits (114), Expect = 2e-05
Identities = 27/81 (33%), Positives = 46/81 (56%)
Query: 209 ELELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEKSGEEGE 268
E E++ E E E E ++ E K+ E+ EE++ E E KEE +++ E E++ EE E
Sbjct: 918 EEEVKEEEVEEEEEEEEEEEEVKEEKEEEEEEEREEEEEKEEEKEEEEEEDEKEEEEEEE 977
Query: 269 EEEADREVDGDQNGMMLNIDE 289
EEE + E D +++ + + E
Sbjct: 978 EEEEEEEEDENKDVLEASFTE 998
Score = 47.8 bits (112), Expect = 4e-05
Identities = 23/73 (31%), Positives = 45/73 (61%)
Query: 207 EPELELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEKSGEE 266
E E++ E E E E E ++V+++ +E+ EE++ E + +E+ +++ + KEE+ EE
Sbjct: 918 EEEVKEEEVEEEEEEEEEEEEVKEEKEEEEEEEREEEEEKEEEKEEEEEEDEKEEEEEEE 977
Query: 267 GEEEEADREVDGD 279
EEEE + + + D
Sbjct: 978 EEEEEEEEDENKD 990
Score = 47.4 bits (111), Expect = 5e-05
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 207 EPELELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEKSGEE 266
+PE E + E E E + + E+++ +E+ EE K E E +EE +++ E +EEK EE
Sbjct: 906 KPEGEEKEEEGGEEEVKEEEVEEEEEEEEEEEEVKEEKEEEEEEEREEEEEKEEEKEEEE 965
Query: 267 GEEEEADREVDGDQ 280
E+E+ + E + ++
Sbjct: 966 EEDEKEEEEEEEEE 979
Score = 47.0 bits (110), Expect = 6e-05
Identities = 26/71 (36%), Positives = 40/71 (55%)
Query: 205 QPEPELELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEKSG 264
+ E E E E E E E ++ E+++ E+ EE++ E E +EE ++K E +EE
Sbjct: 911 EKEEEGGEEEVKEEEVEEEEEEEEEEEEVKEEKEEEEEEEREEEEEKEEEKEEEEEEDEK 970
Query: 265 EEGEEEEADRE 275
EE EEEE + E
Sbjct: 971 EEEEEEEEEEE 981
Score = 45.8 bits (107), Expect = 1e-04
Identities = 24/77 (31%), Positives = 44/77 (56%)
Query: 204 PQPEPELELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEKS 263
P+ E + E E E + E ++ E+++ +E EEK+ E E +EE + + E +EE+
Sbjct: 907 PEGEEKEEEGGEEEVKEEEVEEEEEEEEEEEEVKEEKEEEEEEEREEEEEKEEEKEEEEE 966
Query: 264 GEEGEEEEADREVDGDQ 280
+E EEEE + E + ++
Sbjct: 967 EDEKEEEEEEEEEEEEE 983
Score = 44.3 bits (103), Expect = 4e-04
Identities = 22/57 (38%), Positives = 35/57 (60%)
Query: 219 EPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEKSGEEGEEEEADRE 275
E E G++ E++ +E+ +E++VE E +EE ++ E KEE+ EE EEEE E
Sbjct: 903 EAEKPEGEEKEEEGGEEEVKEEEVEEEEEEEEEEEEVKEEKEEEEEEEREEEEEKEE 959
Score = 41.2 bits (95), Expect = 0.004
Identities = 23/66 (34%), Positives = 39/66 (58%), Gaps = 1/66 (1%)
Query: 205 QPEPELELEPEPEPEPETEPGQ-KVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEKS 263
+ E E++ E E E E E E + K E+K+ +E+ +EK+ E E +EE ++++ENK+
Sbjct: 934 EEEEEVKEEKEEEEEEEREEEEEKEEEKEEEEEEDEKEEEEEEEEEEEEEEEDENKDVLE 993
Query: 264 GEEGEE 269
EE
Sbjct: 994 ASFTEE 999
Score = 40.4 bits (93), Expect = 0.006
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 207 EPELELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVENSE-MKEEGGDDKNENKEEKSGE 265
E E E E E E + E E ++ E ++ +EK EEK+ E E KEE +++ E +EE+ E
Sbjct: 928 EEEEEEEEEEEVKEEKEEEEEEEREEEEEKEEEKEEEEEEDEKEEEEEEEEEEEEEEEDE 987
Query: 266 EGEEEEA 272
+ EA
Sbjct: 988 NKDVLEA 994
Score = 34.3 bits (77), Expect = 0.44
Identities = 17/55 (30%), Positives = 35/55 (62%), Gaps = 3/55 (5%)
Query: 226 QKVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEKSGEEGEEEEADREVDGDQ 280
+K E ++ +E+ E++V+ E++EE ++ E +EE+ EE EEEE + + ++
Sbjct: 905 EKPEGEEKEEEGGEEEVKEEEVEEE---EEEEEEEEEVKEEKEEEEEEEREEEEE 956
Score = 32.3 bits (72), Expect = 1.7
Identities = 22/64 (34%), Positives = 36/64 (55%), Gaps = 5/64 (7%)
Query: 220 PETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEK---SGEEGEEEEADREV 276
PE + E + +EK EE E E+KEE +++ E +EE+ E+ EEEE +RE
Sbjct: 896 PEGFQMSEAEKPEGEEKEEEGGEE--EVKEEEVEEEEEEEEEEEEVKEEKEEEEEEEREE 953
Query: 277 DGDQ 280
+ ++
Sbjct: 954 EEEK 957
Score = 31.2 bits (69), Expect = 3.7
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 3 EEAKQLKKDASVHHDEPPKAESKPKEKPEEEKKGEKSVEEKKD 45
EE K+ K++ +E + E K +EK EEE++ EK EE+++
Sbjct: 937 EEVKEEKEEEE--EEEREEEEEKEEEKEEEEEEDEKEEEEEEE 977
Score = 30.0 bits (66), Expect = 8.2
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 2 GEEAKQLKKDASVHHDEPPKAESKPKEKPEEEKKGEKSVEEKKD 45
GEE ++K++ +E + E + KE+ EEE++ E+ EE+K+
Sbjct: 917 GEE--EVKEEEVEEEEEEEEEEEEVKEEKEEEEEEEREEEEEKE 958
>TONB_HELPY (O25899) TonB protein
Length = 285
Score = 52.0 bits (123), Expect = 2e-06
Identities = 53/183 (28%), Positives = 77/183 (41%), Gaps = 17/183 (9%)
Query: 124 EPVPEIVNSQVSEPVTVEL---NVNMHCEACAEQLKGKILKMRGVQTAVAKLSTGKVIVT 180
E PE + + VT+ L N N + + AE K K + K K VT
Sbjct: 37 EDAPEPLAQAGTTKVTMSLASINTNSNTKTNAESAKPKEEPKEKPKKEEPKKEEPKKEVT 96
Query: 181 GTMDANKLVEYVYRRTKKLAKIIPQPEPELELEPEPEPEPETEPGQKVEDKDTDEKPE-- 238
K K K P+PEP+ E +PEP+PEP+ E +K E K+ +K E
Sbjct: 97 KPKPKPK--------PKPKPKPKPKPEPKPEPKPEPKPEPKVEEVKKEEPKEEPKKEEAK 148
Query: 239 EKKVENSEMKEEGGDD--KNENKEEKSGE--EGEEEEADREVDGDQNGMMLNIDEGSMKR 294
E+ E S K+ D K ++K+E+S + EG EA G N ++ I +
Sbjct: 149 EEAKEKSAPKQVTTKDIVKEKDKQEESNKTSEGATSEAQAYNPGVSNEFLMKIQTAISSK 208
Query: 295 MMY 297
Y
Sbjct: 209 NRY 211
Score = 38.1 bits (87), Expect = 0.030
Identities = 51/229 (22%), Positives = 87/229 (37%), Gaps = 46/229 (20%)
Query: 3 EEAKQLKKDASVHHDEP------PKAESKPKEKPEEEKKGEKSVEEKKDPKPPSPCVLFV 56
EE K+ K +EP PK + KPK KP+ + K E E K +PKP
Sbjct: 75 EEPKEKPKKEEPKKEEPKKEVTKPKPKPKPKPKPKPKPKPEPKPEPKPEPKPEP------ 128
Query: 57 DLHCVGCARKIEKCIMKLRGVERVLIDMAKKEVMIKGIVEPKAICNIITKKTKRLAKVIS 116
K+E+ + K E + AK+E K + +I+ +K K
Sbjct: 129 ---------KVEE-VKKEEPKEEPKKEEAKEEAKEKSAPKQVTTKDIVKEKDK------- 171
Query: 117 PLPEAEGEPVPEIVNSQV---SEPVTVELNVNMHCEACAEQLKGKILKMRGVQ------- 166
+ E E S+ + V+ E + + ++ K+ ++RG++
Sbjct: 172 ---QEESNKTSEGATSEAQAYNPGVSNEFLMKIQTAISSKNRYPKMAQIRGIEGEVLVSF 228
Query: 167 --TAVAKLSTGKVIVTGTMDANKLVEYVYRRTKKLAKIIPQPEPELELE 213
A ++ KV+ + T D L K A + P+PE + L+
Sbjct: 229 TINADGSVTDIKVVKSNTTDI--LNHAALEAIKSAAHLFPKPEETVHLK 275
>ABRA_PLAFC (P22620) 101 kDa malaria antigen (P101) (Acidic basic
repeat antigen)
Length = 743
Score = 51.2 bits (121), Expect = 3e-06
Identities = 27/80 (33%), Positives = 45/80 (55%)
Query: 197 KKLAKIIPQPEPELELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDKN 256
K++ I Q E E++ E E + +K ++K+ EK E++K E + KEE +K
Sbjct: 653 KQVEAITKQIEAEVDALAPKNKEEEEKEKEKEKEKEEKEKEEKEKEEKEKEKEEKEKEKE 712
Query: 257 ENKEEKSGEEGEEEEADREV 276
E +EEK +E E+EE + E+
Sbjct: 713 EKEEEKKEKEEEQEEEEEEI 732
Score = 44.3 bits (103), Expect = 4e-04
Identities = 24/73 (32%), Positives = 41/73 (55%)
Query: 196 TKKLAKIIPQPEPELELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDK 255
TK++ + P+ + E E E E E E +K +++ E+ E++K E + KEE ++K
Sbjct: 659 TKQIEAEVDALAPKNKEEEEKEKEKEKEKEEKEKEEKEKEEKEKEKEEKEKEKEEKEEEK 718
Query: 256 NENKEEKSGEEGE 268
E +EE+ EE E
Sbjct: 719 KEKEEEQEEEEEE 731
Score = 44.3 bits (103), Expect = 4e-04
Identities = 29/103 (28%), Positives = 57/103 (55%), Gaps = 7/103 (6%)
Query: 184 DANKLVEYVYRRTKKLAKIIPQPEPELELEPEPEP-----EPETEP-GQKVEDKDTDEKP 237
+ NK ++ ++++ ++ Q E E E+E + E E E + K ++++ EK
Sbjct: 624 NGNKNIQQIFQQNILENDVLNQ-ETEEEMEKQVEAITKQIEAEVDALAPKNKEEEEKEKE 682
Query: 238 EEKKVENSEMKEEGGDDKNENKEEKSGEEGEEEEADREVDGDQ 280
+EK+ E E +E+ ++K + KEEK E+ E+EE +E + +Q
Sbjct: 683 KEKEKEEKEKEEKEKEEKEKEKEEKEKEKEEKEEEKKEKEEEQ 725
Score = 37.4 bits (85), Expect = 0.051
Identities = 26/93 (27%), Positives = 50/93 (52%), Gaps = 4/93 (4%)
Query: 184 DANKLVEYVYRRTK-KLAKIIPQPEPELELEPEPEPEPETEPGQKVEDKDTDEKPEEK-- 240
+ K VE + ++ + ++ + P+ + E E E E E E E + ++ E ++ +++ EEK
Sbjct: 650 EMEKQVEAITKQIEAEVDALAPKNKEEEEKEKEKEKEKEEKEKEEKEKEEKEKEKEEKEK 709
Query: 241 -KVENSEMKEEGGDDKNENKEEKSGEEGEEEEA 272
K E E K+E +++ E +EE E EE+
Sbjct: 710 EKEEKEEEKKEKEEEQEEEEEEIVPENLTTEES 742
Score = 35.4 bits (80), Expect = 0.20
Identities = 17/43 (39%), Positives = 26/43 (59%)
Query: 3 EEAKQLKKDASVHHDEPPKAESKPKEKPEEEKKGEKSVEEKKD 45
E+ K+ +K+ E + E K KEK E+EK+ E+ EEKK+
Sbjct: 678 EKEKEKEKEKEEKEKEEKEKEEKEKEKEEKEKEKEEKEEEKKE 720
Score = 33.1 bits (74), Expect = 0.97
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 3 EEAKQLKKDASVHHDEPPKAESKPKEKPEEEKKGEKSVEEKKDPK 47
EE K+ +K+ E + E + KEK +EEK+ EK EEK++ K
Sbjct: 676 EEEKEKEKEKEKEEKEKEEKEKEEKEKEKEEKEKEK--EEKEEEK 718
Score = 30.4 bits (67), Expect = 6.3
Identities = 22/97 (22%), Positives = 44/97 (44%), Gaps = 4/97 (4%)
Query: 186 NKLVEYVYRRTKKLAKIIPQPEPELELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVENS 245
N+ Y + TKK + + E + + Q+V D+D D EE ++
Sbjct: 184 NQKATYSFVNTKKKIISLKSQGHKKETSQNQNENNDNQKYQEVNDED-DVNDEEDTNDDE 242
Query: 246 EMKEEGGDDKNENKEEKSGEE-GEEEEADREVDGDQN 281
+ +E +D N++++ E+ +EE+ + E D + N
Sbjct: 243 DTNDE--EDTNDDEDTNDDEDTNDEEDTNDEEDHENN 277
>WD43_MOUSE (Q6ZQL4) WD-repeat protein 43 (Fragment)
Length = 665
Score = 50.8 bits (120), Expect = 4e-06
Identities = 75/294 (25%), Positives = 123/294 (41%), Gaps = 43/294 (14%)
Query: 1 MGEEAKQLKKDASVHHDEPPKAESKPKEKPEEEKKG--EKSVEEKKDPKPPSPCVLFVDL 58
M EAK L HH ++PKE + K G E ++EE+ +DL
Sbjct: 384 MNSEAKVLVPGIPGHHAPIKLPPAQPKEAENKRKLGSTEATIEERLGA---------MDL 434
Query: 59 HCVGCARKIEK---CIMKLRGVERVLIDMAKKEVMIKGIVEPKAICNIITKKTKRLA-KV 114
G ++ ++ +G+E ++ K + K + N+I + R+ +V
Sbjct: 435 DRKGRKDDLQTNSFAVLLTQGLESNDFEILNKVLQTKNV-------NLIKRTVLRIPLRV 487
Query: 115 ISPLPEA-----EGEPVPEIVNSQVSEPV-TVELNVNMHCEACAEQLKGKILKMRGVQTA 168
+ PL + +G P + Q + V T+ + EQL M
Sbjct: 488 VIPLLQELTKRLQGHPNSAALMIQWLKCVLTIHASYLSTLPDLVEQLGTLYQLMESRVKT 547
Query: 169 VAKLST--GKVIVTGTMDANKLVEYVYRRTKKLAKIIPQPEPELELEPEPEPEPETEPGQ 226
KLS GK+I+ LV V K P + +L E E E E
Sbjct: 548 FQKLSNLHGKLIL--------LVTQVTASEKSKKMTSPGQKAKLVYEEESSEE---ESDD 596
Query: 227 KVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEKSGEEGEEEEADREVDGDQ 280
+V +KD+D+ +E + ++SE K+EG D+ NE +E++ E+ EE E DREV ++
Sbjct: 597 EVPEKDSDDNWDEDEDKDSE-KDEGVDEDNE-EEDEDMEDKEENEEDREVSSEK 648
>NFM_HUMAN (P07197) Neurofilament triplet M protein (160 kDa
neurofilament protein) (Neurofilament medium
polypeptide) (NF-M) (Neurofilament 3)
Length = 915
Score = 50.8 bits (120), Expect = 4e-06
Identities = 31/96 (32%), Positives = 50/96 (51%), Gaps = 10/96 (10%)
Query: 194 RRTKKLAKIIPQPEPELELEP---------EPEPEPETEPGQKVEDKDTDEKPEEKKVEN 244
+ KK A + EPE E E PE + E G+K E++ +E+ EE +
Sbjct: 484 KEEKKEAAEEKEEEPEAEEEEVAAKKSPVKATAPEVKEEEGEKEEEEGQEEEEEEDEGAK 543
Query: 245 SEMKEEGGDDKNENKEEKSGEEGEEEEADREVDGDQ 280
S+ EEGG +K + E++ GE+ EE E + E +G++
Sbjct: 544 SDQAEEGGSEKEGSSEKEEGEQ-EEGETEAEAEGEE 578
Score = 39.7 bits (91), Expect = 0.010
Identities = 67/283 (23%), Positives = 109/283 (37%), Gaps = 51/283 (18%)
Query: 9 KKDASVHHDEPPKAESKPK---EKPEEEKKGEKSVEEKKDPKPPSPCVLFVDLHCVGCAR 65
+K+ S +E + E + + E E E K EK VEEK + ++
Sbjct: 553 EKEGSSEKEEGEQEEGETEAEAEGEEAEAKEEKKVEEKSEEVATKEELV--------ADA 604
Query: 66 KIEKCIMKLRGVERVLIDMAKKEVMIKGIVEPKAICNIITKKTKRLAKVISPLPEAEGEP 125
K+EK V + ++ K + K VE K + + K SP+P++ P
Sbjct: 605 KVEKPEKAKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEKGK--SPVPKS---P 659
Query: 126 VPEIVNSQVSEPVTVELNVNMHCEACAEQLKGKILKMRGVQTAVAKLSTGKVIVTGTMDA 185
V E S VS+ E + ++ E+ K K +G Q
Sbjct: 660 VEEKGKSPVSKSPVEEKAKSPVPKSPVEEAKSKAEVGKGEQK------------------ 701
Query: 186 NKLVEYVYRRTKKLAKIIPQPEPELELEPEPEPEPETEPGQK------VEDKDTDEKPEE 239
+K K P+ E + E +P+ PE + + V + T K +
Sbjct: 702 --------EEEEKEVKEAPKEEKVEKKEEKPKDVPEKKKAESPVKEEAVAEVVTITKSVK 753
Query: 240 KKVENSEMKEEGGDDKNENKEEKSGEEG--EEEEADREVDGDQ 280
+E E KEEG + E ++EK+G EG EEE +D+ G +
Sbjct: 754 VHLEK-ETKEEGKPLQQEKEKEKAGGEGGSEEEGSDKGAKGSR 795
Score = 38.5 bits (88), Expect = 0.023
Identities = 24/65 (36%), Positives = 31/65 (46%), Gaps = 2/65 (3%)
Query: 207 EPELELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEKSGEE 266
E E E E E E E E + + +E EK E S KEEG ++ E + E GEE
Sbjct: 521 EEEGEKEEEEGQEEEEEEDEGAKSDQAEEGGSEK--EGSSEKEEGEQEEGETEAEAEGEE 578
Query: 267 GEEEE 271
E +E
Sbjct: 579 AEAKE 583
Score = 37.4 bits (85), Expect = 0.051
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
Query: 184 DANKLVEYVYRRTKKLAKIIPQPEPELELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVE 243
+ +++ E + T++LA + + + E E E EPE E E + K K
Sbjct: 464 EKSEMEEALTAITEELAASMKEEKKEAAEEKEEEPEAEEE--------EVAAKKSPVKAT 515
Query: 244 NSEMKEEGGDDKNENKEEKSGEEGEEEEADREVDGDQNG 282
E+KEE G E +EE+ EE EEE+ + D + G
Sbjct: 516 APEVKEEEG----EKEEEEGQEEEEEEDEGAKSDQAEEG 550
Score = 35.8 bits (81), Expect = 0.15
Identities = 35/143 (24%), Positives = 59/143 (40%), Gaps = 3/143 (2%)
Query: 152 AEQLKGKILKMRGVQTAVAKLSTGKVIVTGTMDANKLVEYVYRRTKKLAKIIPQPEPELE 211
A + G + R T +K+ KV +K VE + TK + E
Sbjct: 415 AGSITGPLYTHRPPITISSKIQKTKVEAPKLKVQHKFVEEIIEETKVEDEKSEMEEALTA 474
Query: 212 LEPEPEPEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEKSGEEGEEEE 271
+ E + E + E+K+ E+PE ++ E + K E KEE+ GE+ EEE
Sbjct: 475 ITEELAASMKEEKKEAAEEKE--EEPEAEEEEVAAKKSPVKATAPEVKEEE-GEKEEEEG 531
Query: 272 ADREVDGDQNGMMLNIDEGSMKR 294
+ E + D+ +EG ++
Sbjct: 532 QEEEEEEDEGAKSDQAEEGGSEK 554
>NAB3_YEAST (P38996) Nuclear polyadenylated RNA-binding protein 3
Length = 802
Score = 50.4 bits (119), Expect = 6e-06
Identities = 32/96 (33%), Positives = 52/96 (53%), Gaps = 8/96 (8%)
Query: 204 PQPEPELELEPEPEPEPETEPGQKVEDKDTDEKPEEK-KVENSEMKEE-------GGDDK 255
P+ E E E E E E + E E E++D +EK EE +V N+E +EE G DD
Sbjct: 44 PEEEREAEREEENEEQHELEDVNDEEEEDKEEKGEENGEVINTEEEEEEEHQQKGGNDDD 103
Query: 256 NENKEEKSGEEGEEEEADREVDGDQNGMMLNIDEGS 291
+++ EE+ EE ++++ D + D D+ +EG+
Sbjct: 104 DDDNEEEEEEEEDDDDDDDDDDDDEEEEEEEEEEGN 139
Score = 40.0 bits (92), Expect = 0.008
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 12/83 (14%)
Query: 210 LELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEKSG----- 264
+ E E E E + + G +D D +E+ EE++ ++ + ++ D++ E +EE+ G
Sbjct: 84 INTEEEEEEEHQQKGGNDDDDDDNEEEEEEEEDDDDDDDDDDDDEEEEEEEEEEGNDNSS 143
Query: 265 -------EEGEEEEADREVDGDQ 280
E+GE+EE ++ D+
Sbjct: 144 VGSDSAAEDGEDEEDKKDKTKDK 166
Score = 37.7 bits (86), Expect = 0.039
Identities = 25/85 (29%), Positives = 41/85 (47%), Gaps = 11/85 (12%)
Query: 206 PEPELELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEKSGE 265
P PEL ++ E E +D + PEE++ E EN+E+ E
Sbjct: 14 PSPELSVDSNSN-ENELMNNSSADDGIEFDAPEEEREAERE---------EENEEQHELE 63
Query: 266 E-GEEEEADREVDGDQNGMMLNIDE 289
+ +EEE D+E G++NG ++N +E
Sbjct: 64 DVNDEEEEDKEEKGEENGEVINTEE 88
Score = 35.0 bits (79), Expect = 0.26
Identities = 18/63 (28%), Positives = 35/63 (54%), Gaps = 2/63 (3%)
Query: 215 EPEPEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEKSGEEGEEEEADR 274
E E E E + +D D +E+ EE++ E ++ G D E+ E++ E+ +++ D+
Sbjct: 109 EEEEEEEDDDDDDDDDDDDEEEEEEEEEEGNDNSSVGSDSAAEDGEDE--EDKKDKTKDK 166
Query: 275 EVD 277
EV+
Sbjct: 167 EVE 169
Score = 32.0 bits (71), Expect = 2.2
Identities = 14/60 (23%), Positives = 33/60 (54%)
Query: 211 ELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEKSGEEGEEE 270
E E E E + + + +D++ +E+ EE+ +NS + + + E++E+K + ++E
Sbjct: 108 EEEEEEEEDDDDDDDDDDDDEEEEEEEEEEGNDNSSVGSDSAAEDGEDEEDKKDKTKDKE 167
>TONB_HELPJ (Q9ZJP4) TonB protein
Length = 280
Score = 50.1 bits (118), Expect = 8e-06
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 18/118 (15%)
Query: 194 RRTKKLAKIIPQPEPELELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGD 253
+ TK K P+P+P+ + +P+PEP+P+ EP KVE+ +E EE K E E KEE +
Sbjct: 93 KETKPKPKPKPKPKPKPKPKPKPEPKPKPEP--KVEEPKKEEPKEEPKKE--EAKEEAKE 148
Query: 254 --------------DKNENKEEKSGEEGEEEEADREVDGDQNGMMLNIDEGSMKRMMY 297
+K++ +E EG EA G N ++ I + Y
Sbjct: 149 KSVPKQVTTKDIVKEKDKQEESNKTSEGATSEAQAYNPGVSNEFLMKIQTAISSKNRY 206
Score = 45.8 bits (107), Expect = 1e-04
Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 7/112 (6%)
Query: 165 VQTAVAKLSTGKVIVTGTMDANKLVEYVYRRTKKLAKIIPQPEPELELEPEPEPEPETEP 224
V ++A ++T T A E + K+ K + EP+ E +P+P+P+P+ +P
Sbjct: 51 VTMSLASINTNSNTKTNAESAKPKEEPKEKPKKEEPK---KEEPKKETKPKPKPKPKPKP 107
Query: 225 GQKVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEKSGEEGEEEEADREV 276
K + K + E KVE E K+E + K E K+E++ EE +E+ ++V
Sbjct: 108 KPKPKPKPEPKPKPEPKVE--EPKKE--EPKEEPKKEEAKEEAKEKSVPKQV 155
Score = 36.6 bits (83), Expect = 0.088
Identities = 50/224 (22%), Positives = 89/224 (39%), Gaps = 41/224 (18%)
Query: 3 EEAKQLKKDASVHHDEPPKAESKPKEKPEEEKKGEKSVEEKKDPKP-PSPCVLFVDLHCV 61
EE K+ K +EP K E+KPK KP+ + K + + K +PKP P P
Sbjct: 75 EEPKEKPKKEEPKKEEPKK-ETKPKPKPKPKPKPKPKPKPKPEPKPKPEP---------- 123
Query: 62 GCARKIEKCIMKLRGVERVLIDMAKKEVMIKGIVEPKAICNIITKKTKRLAKVISPLPEA 121
K+E+ K E + AK+E K + + +I+ +K K +
Sbjct: 124 ----KVEE-PKKEEPKEEPKKEEAKEEAKEKSVPKQVTTKDIVKEKDK----------QE 168
Query: 122 EGEPVPEIVNSQV---SEPVTVELNVNMHCEACAEQLKGKILKMRGVQ---------TAV 169
E E S+ + V+ E + + ++ K+ ++RG++ A
Sbjct: 169 ESNKTSEGATSEAQAYNPGVSNEFLMKIQTAISSKNRYPKMAQIRGIEGEVLVSFTINAD 228
Query: 170 AKLSTGKVIVTGTMDANKLVEYVYRRTKKLAKIIPQPEPELELE 213
++ KV+ + T D L K A + P+P+ + L+
Sbjct: 229 GSVTDIKVVKSNTTDI--LNHAALEAIKSAAHLFPKPDETVHLK 270
Score = 33.1 bits (74), Expect = 0.97
Identities = 18/33 (54%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 20 PKAESKPKEKPEEEKKGEKSVEEKKDPKP-PSP 51
PK E K K K EE KK E E K PKP P P
Sbjct: 73 PKEEPKEKPKKEEPKKEEPKKETKPKPKPKPKP 105
>NFM_CHICK (P16053) Neurofilament triplet M protein (160 kDa
neurofilament protein) (Neurofilament medium
polypeptide) (NF-M)
Length = 857
Score = 50.1 bits (118), Expect = 8e-06
Identities = 27/74 (36%), Positives = 43/74 (57%), Gaps = 1/74 (1%)
Query: 209 ELELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEKSGEEGE 268
E +E E E E + E+K+ +E+ EE++ S+ EEGG K E +E++ GEE E
Sbjct: 492 EEAVEEEAVSEKAAEQAAEEEEKE-EEEAEEEEAAKSDAAEEGGSKKEEIEEKEEGEEAE 550
Query: 269 EEEADREVDGDQNG 282
EEEA+ + ++ G
Sbjct: 551 EEEAEAKGKAEEAG 564
Score = 41.2 bits (95), Expect = 0.004
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 8/118 (6%)
Query: 165 VQTAVAKLSTGKVIVTGTMDANKLVEYVYRRTKKLAKIIPQPEPELELEPEPEPEPETEP 224
V A K+ K+ +K VE + TK + + E+E E
Sbjct: 425 VTIASTKIQKTKIEPPKLKVQHKFVEEIIEETKV-------EDEKSEMEDALSAIAEEMA 477
Query: 225 GQKVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEKSGEEGEEEEADREVDGDQNG 282
+ E++ +EK EE+ VE + E+ + E +EEK EE EEEEA + ++ G
Sbjct: 478 AKAQEEEQEEEKAEEEAVEEEAVSEKAAEQAAE-EEEKEEEEAEEEEAAKSDAAEEGG 534
>UBF1_MOUSE (P25976) Nucleolar transcription factor 1 (Upstream
binding factor 1) (UBF-1)
Length = 765
Score = 49.7 bits (117), Expect = 1e-05
Identities = 31/108 (28%), Positives = 57/108 (52%), Gaps = 11/108 (10%)
Query: 190 EYVYRRTKKLAKII-PQPEPE---LELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVENS 245
EY+ + K + K+ P P+ L+ + E E + + E E+ D +E+ EE+ EN
Sbjct: 647 EYISNKRKNMTKLRGPNPKSSRTTLQSKSESEEDDDEE-----EEDDEEEEEEEEDDENG 701
Query: 246 EMKEEGGDDKNENKEEKS--GEEGEEEEADREVDGDQNGMMLNIDEGS 291
+ E+GGD + E++S G+E ++++ D + + D + N EGS
Sbjct: 702 DSSEDGGDSSESSSEDESEDGDENDDDDDDEDDEDDDDEDEDNESEGS 749
Score = 40.0 bits (92), Expect = 0.008
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 195 RTKKLAKIIPQPEPELELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDD 254
RT +K + + + E E + E E E E E+ D+ E + +SE + E GD+
Sbjct: 668 RTTLQSKSESEEDDDEEEEDDEEEEEEEEDD---ENGDSSEDGGDSSESSSEDESEDGDE 724
Query: 255 KNENKEEKSGEEGEEEEADREVDGDQN 281
+++ +++ E+ ++E+ D E +G +
Sbjct: 725 NDDDDDDEDDEDDDDEDEDNESEGSSS 751
Score = 33.9 bits (76), Expect = 0.57
Identities = 21/81 (25%), Positives = 38/81 (45%), Gaps = 5/81 (6%)
Query: 207 EPELELEPEPEPEPETEPGQKVEDK-DTDEKPEEKKVENSEMKEEGGDDKNE----NKEE 261
E E + E E E E + E G ED D+ E E + E+ + ++ DD+++ +++E
Sbjct: 683 EEEEDDEEEEEEEEDDENGDSSEDGGDSSESSSEDESEDGDENDDDDDDEDDEDDDDEDE 742
Query: 262 KSGEEGEEEEADREVDGDQNG 282
+ EG + D +G
Sbjct: 743 DNESEGSSSSSSSSGDSSDSG 763
>NSB1_MOUSE (Q9JL35) Nucleosome binding protein 1 (Nucleosome
binding protein 45) (NBP-45) (GARP45 protein)
Length = 406
Score = 49.7 bits (117), Expect = 1e-05
Identities = 46/177 (25%), Positives = 78/177 (43%), Gaps = 4/177 (2%)
Query: 101 CNIITKKTKRLAKVISPLPEAEGEPVPEIVNSQVSEPVTVELNVNMHCEACAEQLKGKIL 160
CN+ + + +P+P+ E E V E +N E E + EA ++LK I
Sbjct: 72 CNMENAENGEAKIMEAPIPKMEAEEVKEQINEDTEEDGG-EKKEAVAAEAKDDELKANIQ 130
Query: 161 KMRGVQTAVAKLSTGKVIVTGTMDANKLVEYVYRRTKKLAKIIPQPEPELELEP-EPEPE 219
+ + TG+ + G ++ L E + A++ E + + E E E
Sbjct: 131 DVEKDEDGKEHKDTGEEVEDGKIEEEGLNEKPGTAKSEDAEVSKDEEEKGDNEKGEDGKE 190
Query: 220 PETEPGQKVEDKDTDEKPE-EKKVENSEMKEEGGDDKNENKEEKSGEEGEEEEADRE 275
E ++ +DK+ D E E K +N E +E+ G K E +E G+EG+ EE +E
Sbjct: 191 EGDEKEEEKDDKEGDTGTEKEVKEQNKEAEEDDGKCKEEENKE-VGKEGQPEEDGKE 246
Score = 40.0 bits (92), Expect = 0.008
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 215 EPEPEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDKNEN--KEEKSGEEGEEEEA 272
E +P+ + + GQ ED D+ E+ K + KE+G + +E KE+ E+G+E++
Sbjct: 300 EGQPKEDQKEGQPEEDGKEDQPEEDGK--EGQCKEDGKEGHHEEGGKEDLHEEDGKEKDG 357
Query: 273 DREVDGDQNGMMLNIDEGS 291
+E ++ + +DEGS
Sbjct: 358 GKEDRKEEGEQEVAVDEGS 376
Score = 38.9 bits (89), Expect = 0.018
Identities = 40/187 (21%), Positives = 76/187 (40%), Gaps = 13/187 (6%)
Query: 105 TKKTKRLAKVISPLPEAEGEPVPEIVNSQVSEPVTVELNVNMHCEACAEQLKGKILKMRG 164
T + + V+ +A P+PE V + +E N A+ ++ I KM
Sbjct: 39 TSRKTKTTNVVEENKDASTIPIPETKPEDVKDECNMENAENGE----AKIMEAPIPKMEA 94
Query: 165 VQTAVAKLSTGKVIVTGTMDANKLVEYVYRRTK--KLAKIIPQPEPELELEPEPEPEPET 222
+ ++ D + E V K +L I E + + + + E
Sbjct: 95 EEVKE------QINEDTEEDGGEKKEAVAAEAKDDELKANIQDVEKDEDGKEHKDTGEEV 148
Query: 223 EPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEKSGEEGEEEEADREVDGDQNG 282
E G K+E++ +EKP K E++E+ ++ + + K E EEG+E+E +++ G
Sbjct: 149 EDG-KIEEEGLNEKPGTAKSEDAEVSKDEEEKGDNEKGEDGKEEGDEKEEEKDDKEGDTG 207
Query: 283 MMLNIDE 289
+ E
Sbjct: 208 TEKEVKE 214
Score = 34.3 bits (77), Expect = 0.44
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 10/84 (11%)
Query: 209 ELELEPEPEPEPETEPGQKVEDKDTDEK------PEE--KKVENSEMKEEGG--DDKNEN 258
E+ E +PE + + + ++V +D E+ PEE K++ + E +EG +D E
Sbjct: 233 EVGKEGQPEEDGKEDLHEEVGKEDLHEEDGKEGQPEEDGKEIHHEEDGKEGQPEEDGKEY 292
Query: 259 KEEKSGEEGEEEEADREVDGDQNG 282
E+ GEEG+ +E +E +++G
Sbjct: 293 LHEEDGEEGQPKEDQKEGQPEEDG 316
Score = 34.3 bits (77), Expect = 0.44
Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 11/85 (12%)
Query: 207 EPELELEPEP---EPEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEKS 263
E + E +PE E +PE E G++ + K+ ++ ++ ++ EE G +K+ KE++
Sbjct: 305 EDQKEGQPEEDGKEDQPE-EDGKEGQCKEDGKEGHHEEGGKEDLHEEDGKEKDGGKEDRK 363
Query: 264 GEEGEEEEA------DREVDGDQNG 282
EEGE+E A + +V+ ++ G
Sbjct: 364 -EEGEQEVAVDEGSDENKVEAEEEG 387
>CNG4_BOVIN (Q28181) 240 kDa protein of rod photoreceptor
CNG-channel [Contains: Glutamic acid-rich protein
(GARP); Cyclic-nucleotide-gated cation channel 4 (CNG
channel 4) (CNG-4) (Cyclic nucleotide-gated cation
channel modulatory subunit)]
Length = 1394
Score = 49.7 bits (117), Expect = 1e-05
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 184 DANKLVEYVYRRTKKLAKIIPQPEPELELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVE 243
+ K+VE R ++ Q E E E E + + E E E G++ E+++ +EK EE+ E
Sbjct: 338 EKGKVVEQTPRELPRI-----QEEKEDEEEEKEDGEEEEEEGREKEEEEGEEKEEEEGRE 392
Query: 244 NSEMKEEGGDDKNENKEEKSGEEGEEEEADREVDGDQNG 282
E + E +++ KEE+ G E E+EE + + + G
Sbjct: 393 KEEEEGEKKEEEGREKEEEEGGEKEDEEGREKEEEEGRG 431
Score = 45.4 bits (106), Expect = 2e-04
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 207 EPELELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEEKSGEE 266
E E E + E E E E G + ED++ EK EE+ E EEGG+ + E K E
Sbjct: 395 EEEGEKKEEEGREKEEEEGGEKEDEEGREKEEEEGRGKEE--EEGGEKEEEEGRGKEEVE 452
Query: 267 GEEEEADREVDGDQNGMM 284
G EEE D E + D + ++
Sbjct: 453 GREEEEDEEEEQDHSVLL 470
Score = 43.1 bits (100), Expect = 0.001
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 195 RTKKLAKIIPQPEPELELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDD 254
RT + A + +E P P + E + E+K+ E+ EE+ E E EEG +
Sbjct: 328 RTSEAAPADEEKGKVVEQTPRELPRIQEEKEDEEEEKEDGEEEEEEGREKEE--EEGEEK 385
Query: 255 KNENKEEKSGEEGEEEEADREVDGDQNGMMLNIDEGSMK 293
+ E EK EEGE++E + ++ G +EG K
Sbjct: 386 EEEEGREKEEEEGEKKEEEGREKEEEEGGEKEDEEGREK 424
Score = 32.0 bits (71), Expect = 2.2
Identities = 30/90 (33%), Positives = 39/90 (43%), Gaps = 22/90 (24%)
Query: 206 PEPELELEPEPE-PEPETEPGQKVEDKDTDE---KPEEKKV--------ENSEM------ 247
PEP P PE P P + P E + D+ +PEE V + SE
Sbjct: 1305 PEPLAPEAPAPEAPAPSSPPPASQERPEGDKDAARPEEHPVRIHVTLGPDPSEQILLVEV 1364
Query: 248 --KEEGGDDKNENKEEKSGEEGEEEEADRE 275
K+E + K E EEK EEGEE ++E
Sbjct: 1365 PEKQEEKEKKEEETEEK--EEGEEARKEKE 1392
Score = 31.6 bits (70), Expect = 2.8
Identities = 22/92 (23%), Positives = 41/92 (43%), Gaps = 3/92 (3%)
Query: 202 IIPQPEPELELEPEPEPEPETEPGQKVEDKDTDEKPEEKKVENSEMKEEGGDDKNENKEE 261
I+ + +P E + E T P +EK + + E+ + ++E +E+
Sbjct: 305 ILEEVDPHWEEDEHQEGSTSTSPRTSEAAPADEEKGKVVEQTPRELPRIQEEKEDEEEEK 364
Query: 262 KSGEEGEEEEADREVDGDQNGMMLNIDEGSMK 293
+ GEE EEE ++E ++ G +EG K
Sbjct: 365 EDGEEEEEEGREKE---EEEGEEKEEEEGREK 393
Score = 30.4 bits (67), Expect = 6.3
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 223 EPGQKVEDKDTDEKPEEK--KVENSEMKEEGGDDKNENKEE 261
+P +++ + EK EEK K E +E KEEG + + E +EE
Sbjct: 1354 DPSEQILLVEVPEKQEEKEKKEEETEEKEEGEEARKEKEEE 1394
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.308 0.130 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,641,896
Number of Sequences: 164201
Number of extensions: 2203693
Number of successful extensions: 34966
Number of sequences better than 10.0: 1176
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 541
Number of HSP's that attempted gapping in prelim test: 17504
Number of HSP's gapped (non-prelim): 9084
length of query: 325
length of database: 59,974,054
effective HSP length: 110
effective length of query: 215
effective length of database: 41,911,944
effective search space: 9011067960
effective search space used: 9011067960
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 66 (30.0 bits)
Lotus: description of TM0207.10