BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0206b.6
         (90 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

RPOD_NEIGO (P52325) RNA polymerase sigma factor rpoD (Sigma-70)        28  3.1
ARGB_AGRT5 (Q8UIB7) Acetylglutamate kinase (EC 2.7.2.8) (NAG kin...    28  3.1
PEDD_PEDAC (P36497) Pediocin PA-1 transport/processing ATP-bindi...    28  4.1
Y630_RICPR (Q9ZCT3) Hypothetical UPF0118 protein RP630                 27  9.1
EMRY_ECOLI (P52600) Multidrug resistance protein Y                     27  9.1

>RPOD_NEIGO (P52325) RNA polymerase sigma factor rpoD (Sigma-70)
          Length = 642

 Score = 28.5 bits (62), Expect = 3.1
 Identities = 15/41 (36%), Positives = 21/41 (50%)

Query: 25  EVSAVLNELSSFFRQLCGKVLNVKALDKLQHDIVLTLCHME 65
           EV     ++ S    L GKV N++ L++   DI L   HME
Sbjct: 282 EVRFATRQIDSLSSSLRGKVENIRKLEREIRDICLDRVHME 322


>ARGB_AGRT5 (Q8UIB7) Acetylglutamate kinase (EC 2.7.2.8) (NAG
           kinase) (AGK) (N-acetyl-L-glutamate
           5-phosphotransferase)
          Length = 294

 Score = 28.5 bits (62), Expect = 3.1
 Identities = 14/61 (22%), Positives = 32/61 (51%)

Query: 12  QFLPLAMWGSLPDEVSAVLNELSSFFRQLCGKVLNVKALDKLQHDIVLTLCHMEMLFPLS 71
           + + + + GS+  E+ A++N+   +   LCGK  N+   +K +  ++    ++E +  L 
Sbjct: 96  EIVEMVLAGSINKEIVALINQTGEWAIGLCGKDGNMVFAEKAKKTVIDPDSNIERVLDLG 155

Query: 72  F 72
           F
Sbjct: 156 F 156


>PEDD_PEDAC (P36497) Pediocin PA-1 transport/processing ATP-binding
           protein pedD (EC 3.4.22.-) (Pediocin AcH transport
           ATP-binding protein papD)
          Length = 724

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 21/78 (26%), Positives = 34/78 (42%), Gaps = 17/78 (21%)

Query: 6   FHILMEQFLPLAMWGSLP---------DEVSAVLNELSSFFRQLCGKVLNVKALDKLQHD 56
           F ++++ +LP  M   L              A++N + SFF  + G+        +L  D
Sbjct: 191 FQLIIDTYLPHLMTNRLSLVAIGLIVAYAFQAIINYIQSFFTIVLGQ--------RLMID 242

Query: 57  IVLTLCHMEMLFPLSFFT 74
           IVL   H     P++FFT
Sbjct: 243 IVLKYVHHLFDLPMNFFT 260


>Y630_RICPR (Q9ZCT3) Hypothetical UPF0118 protein RP630
          Length = 351

 Score = 26.9 bits (58), Expect = 9.1
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 6/82 (7%)

Query: 10  MEQFLPLAMWGSLPDEVSAVLNELSSFFRQLCGKVLNVKALDKLQHDIVLTLCHMEMLFP 69
           ME  LP+     + + +SA+ N LSS+ R      LN+  L    + I  TL  +++   
Sbjct: 178 MESLLPIKTRPKILEILSAINNLLSSYIR----GQLNICLLLSTYYSIAFTLIGIDLALL 233

Query: 70  LSFFTVSVHLI--LSLFFLWLL 89
           L   T  + +I  L  F  +LL
Sbjct: 234 LGILTGFLVIIPLLGTFISFLL 255


>EMRY_ECOLI (P52600) Multidrug resistance protein Y
          Length = 512

 Score = 26.9 bits (58), Expect = 9.1
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 13  FLPLAM--WGSLPDEVSAVLNELSSFFRQLCGKV 44
           FLPL    +  LPD   A  + +S+FFR L G V
Sbjct: 383 FLPLTTISFSGLPDNKFANASSMSNFFRTLSGSV 416


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.333    0.145    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,572,737
Number of Sequences: 164201
Number of extensions: 295533
Number of successful extensions: 1274
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1271
Number of HSP's gapped (non-prelim): 5
length of query: 90
length of database: 59,974,054
effective HSP length: 66
effective length of query: 24
effective length of database: 49,136,788
effective search space: 1179282912
effective search space used: 1179282912
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 58 (26.9 bits)