BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0206b.1
(35 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
PPIF_RAT (P29117) Peptidyl-prolyl cis-trans isomerase, mitochond... 59 2e-09
PPIF_MOUSE (Q99KR7) Peptidyl-prolyl cis-trans isomerase, mitocho... 59 2e-09
PPIF_HUMAN (P30405) Peptidyl-prolyl cis-trans isomerase, mitocho... 59 2e-09
CYPB_VICFA (Q41651) Peptidyl-prolyl cis-trans isomerase, chlorop... 59 3e-09
CYP4_ARATH (P34791) Peptidyl-prolyl cis-trans isomerase, chlorop... 58 6e-09
PPIA_RAT (P10111) Peptidyl-prolyl cis-trans isomerase A (EC 5.2.... 57 7e-09
PPIA_PIG (P62936) Peptidyl-prolyl cis-trans isomerase A (EC 5.2.... 57 7e-09
PPIA_PAPAN (P62941) Peptidyl-prolyl cis-trans isomerase A (EC 5.... 57 7e-09
PPIA_MOUSE (P17742) Peptidyl-prolyl cis-trans isomerase A (EC 5.... 57 7e-09
PPIA_MACMU (P62940) Peptidyl-prolyl cis-trans isomerase A (EC 5.... 57 7e-09
PPIA_HUMAN (P62937) Peptidyl-prolyl cis-trans isomerase A (EC 5.... 57 7e-09
PPIA_FELCA (Q8HXS3) Peptidyl-prolyl cis-trans isomerase A (EC 5.... 57 7e-09
PPIA_CRILO (P14851) Peptidyl-prolyl cis-trans isomerase A (EC 5.... 57 7e-09
PPIA_CERAE (P62938) Peptidyl-prolyl cis-trans isomerase A (EC 5.... 57 7e-09
PPIA_BOVIN (P62935) Peptidyl-prolyl cis-trans isomerase A (EC 5.... 57 7e-09
TL20_ARATH (Q9ASS6) Peptidyl-prolyl cis-trans isomerase TLP20, c... 57 1e-08
PPIA_RABIT (Q9TTC6) Peptidyl-prolyl cis-trans isomerase A (EC 5.... 57 1e-08
CYPH_CATRO (Q39613) Peptidyl-prolyl cis-trans isomerase (EC 5.2.... 56 2e-08
CYP7_CAEEL (P52015) Peptidyl-prolyl cis-trans isomerase 7 (EC 5.... 55 3e-08
CYP3_CAEEL (P52011) Peptidyl-prolyl cis-trans isomerase 3 (EC 5.... 55 3e-08
>PPIF_RAT (P29117) Peptidyl-prolyl cis-trans isomerase,
mitochondrial precursor (EC 5.2.1.8) (PPIase) (Rotamase)
(Cyclophilin F)
Length = 206
Score = 59.3 bits (142), Expect = 2e-09
Identities = 26/30 (86%), Positives = 28/30 (92%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F +KHVGPGVLSMANAGPNTNGSQFFI T+
Sbjct: 129 FTLKHVGPGVLSMANAGPNTNGSQFFICTI 158
>PPIF_MOUSE (Q99KR7) Peptidyl-prolyl cis-trans isomerase,
mitochondrial precursor (EC 5.2.1.8) (PPIase) (Rotamase)
(Cyclophilin F)
Length = 206
Score = 59.3 bits (142), Expect = 2e-09
Identities = 26/30 (86%), Positives = 28/30 (92%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F +KHVGPGVLSMANAGPNTNGSQFFI T+
Sbjct: 129 FTLKHVGPGVLSMANAGPNTNGSQFFICTI 158
>PPIF_HUMAN (P30405) Peptidyl-prolyl cis-trans isomerase,
mitochondrial precursor (EC 5.2.1.8) (PPIase) (Rotamase)
(Cyclophilin F)
Length = 207
Score = 59.3 bits (142), Expect = 2e-09
Identities = 26/30 (86%), Positives = 28/30 (92%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F +KHVGPGVLSMANAGPNTNGSQFFI T+
Sbjct: 130 FTLKHVGPGVLSMANAGPNTNGSQFFICTI 159
>CYPB_VICFA (Q41651) Peptidyl-prolyl cis-trans isomerase,
chloroplast precursor (EC 5.2.1.8) (PPIase) (Rotamase)
(Cyclophilin) (Cyclosporin A-binding protein) (CYP B)
Length = 248
Score = 58.5 bits (140), Expect = 3e-09
Identities = 27/30 (90%), Positives = 28/30 (93%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F +KHVGPGVLSMANAGPNTNGSQFFI TV
Sbjct: 166 FDLKHVGPGVLSMANAGPNTNGSQFFICTV 195
>CYP4_ARATH (P34791) Peptidyl-prolyl cis-trans isomerase,
chloroplast precursor (EC 5.2.1.8) (PPIase) (Rotamase)
(Cyclophilin) (Cyclosporin A-binding protein)
Length = 260
Score = 57.8 bits (138), Expect = 6e-09
Identities = 25/30 (83%), Positives = 27/30 (89%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F +KH GPG+LSMANAGPNTNGSQFFI TV
Sbjct: 179 FTLKHTGPGILSMANAGPNTNGSQFFICTV 208
>PPIA_RAT (P10111) Peptidyl-prolyl cis-trans isomerase A (EC
5.2.1.8) (PPIase) (Rotamase) (Cyclophilin A)
(Cyclosporin A-binding protein) (P31)
Length = 163
Score = 57.4 bits (137), Expect = 7e-09
Identities = 24/29 (82%), Positives = 27/29 (92%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFIST 34
F++KH GPG+LSMANAGPNTNGSQFFI T
Sbjct: 87 FILKHTGPGILSMANAGPNTNGSQFFICT 115
>PPIA_PIG (P62936) Peptidyl-prolyl cis-trans isomerase A (EC
5.2.1.8) (PPIase) (Rotamase) (Cyclophilin A)
(Cyclosporin A-binding protein)
Length = 163
Score = 57.4 bits (137), Expect = 7e-09
Identities = 24/29 (82%), Positives = 27/29 (92%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFIST 34
F++KH GPG+LSMANAGPNTNGSQFFI T
Sbjct: 87 FILKHTGPGILSMANAGPNTNGSQFFICT 115
>PPIA_PAPAN (P62941) Peptidyl-prolyl cis-trans isomerase A (EC
5.2.1.8) (PPIase) (Rotamase) (Cyclophilin A)
(Cyclosporin A-binding protein)
Length = 164
Score = 57.4 bits (137), Expect = 7e-09
Identities = 24/29 (82%), Positives = 27/29 (92%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFIST 34
F++KH GPG+LSMANAGPNTNGSQFFI T
Sbjct: 87 FILKHTGPGILSMANAGPNTNGSQFFICT 115
>PPIA_MOUSE (P17742) Peptidyl-prolyl cis-trans isomerase A (EC
5.2.1.8) (PPIase) (Rotamase) (Cyclophilin A)
(Cyclosporin A-binding protein) (SP18)
Length = 163
Score = 57.4 bits (137), Expect = 7e-09
Identities = 24/29 (82%), Positives = 27/29 (92%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFIST 34
F++KH GPG+LSMANAGPNTNGSQFFI T
Sbjct: 87 FILKHTGPGILSMANAGPNTNGSQFFICT 115
>PPIA_MACMU (P62940) Peptidyl-prolyl cis-trans isomerase A (EC
5.2.1.8) (PPIase) (Rotamase) (Cyclophilin A)
(Cyclosporin A-binding protein)
Length = 164
Score = 57.4 bits (137), Expect = 7e-09
Identities = 24/29 (82%), Positives = 27/29 (92%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFIST 34
F++KH GPG+LSMANAGPNTNGSQFFI T
Sbjct: 87 FILKHTGPGILSMANAGPNTNGSQFFICT 115
>PPIA_HUMAN (P62937) Peptidyl-prolyl cis-trans isomerase A (EC
5.2.1.8) (PPIase) (Rotamase) (Cyclophilin A)
(Cyclosporin A-binding protein)
Length = 164
Score = 57.4 bits (137), Expect = 7e-09
Identities = 24/29 (82%), Positives = 27/29 (92%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFIST 34
F++KH GPG+LSMANAGPNTNGSQFFI T
Sbjct: 87 FILKHTGPGILSMANAGPNTNGSQFFICT 115
>PPIA_FELCA (Q8HXS3) Peptidyl-prolyl cis-trans isomerase A (EC
5.2.1.8) (PPIase) (Rotamase) (Cyclophilin A)
(Cyclosporin A-binding protein)
Length = 163
Score = 57.4 bits (137), Expect = 7e-09
Identities = 24/29 (82%), Positives = 27/29 (92%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFIST 34
F++KH GPG+LSMANAGPNTNGSQFFI T
Sbjct: 87 FILKHTGPGILSMANAGPNTNGSQFFICT 115
>PPIA_CRILO (P14851) Peptidyl-prolyl cis-trans isomerase A (EC
5.2.1.8) (PPIase) (Rotamase) (Cyclophilin A)
(Cyclosporin A-binding protein)
Length = 163
Score = 57.4 bits (137), Expect = 7e-09
Identities = 24/29 (82%), Positives = 27/29 (92%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFIST 34
F++KH GPG+LSMANAGPNTNGSQFFI T
Sbjct: 87 FILKHTGPGILSMANAGPNTNGSQFFICT 115
>PPIA_CERAE (P62938) Peptidyl-prolyl cis-trans isomerase A (EC
5.2.1.8) (PPIase) (Rotamase) (Cyclophilin A)
(Cyclosporin A-binding protein)
Length = 164
Score = 57.4 bits (137), Expect = 7e-09
Identities = 24/29 (82%), Positives = 27/29 (92%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFIST 34
F++KH GPG+LSMANAGPNTNGSQFFI T
Sbjct: 87 FILKHTGPGILSMANAGPNTNGSQFFICT 115
>PPIA_BOVIN (P62935) Peptidyl-prolyl cis-trans isomerase A (EC
5.2.1.8) (PPIase) (Rotamase) (Cyclophilin A)
(Cyclosporin A-binding protein)
Length = 163
Score = 57.4 bits (137), Expect = 7e-09
Identities = 24/29 (82%), Positives = 27/29 (92%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFIST 34
F++KH GPG+LSMANAGPNTNGSQFFI T
Sbjct: 87 FILKHTGPGILSMANAGPNTNGSQFFICT 115
>TL20_ARATH (Q9ASS6) Peptidyl-prolyl cis-trans isomerase TLP20,
chloroplast precursor (EC 5.2.1.8) (PPIase) (Rotamase)
(Thylakoid lumen PPIase of 20 kDa)
Length = 259
Score = 56.6 bits (135), Expect = 1e-08
Identities = 25/30 (83%), Positives = 27/30 (89%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F + HVGPGVLSMANAGPNTNGSQFFI T+
Sbjct: 177 FKLSHVGPGVLSMANAGPNTNGSQFFICTI 206
>PPIA_RABIT (Q9TTC6) Peptidyl-prolyl cis-trans isomerase A (EC
5.2.1.8) (PPIase) (Rotamase) (Cyclophilin A)
(Cyclosporin A-binding protein) (Cyclophilin 18)
Length = 163
Score = 56.6 bits (135), Expect = 1e-08
Identities = 24/29 (82%), Positives = 27/29 (92%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFIST 34
F++KH GPG+LSMANAGPNTNGSQFFI T
Sbjct: 87 FLLKHTGPGILSMANAGPNTNGSQFFICT 115
>CYPH_CATRO (Q39613) Peptidyl-prolyl cis-trans isomerase (EC
5.2.1.8) (PPIase) (Rotamase) (Cyclophilin) (Cyclosporin
A-binding protein)
Length = 172
Score = 56.2 bits (134), Expect = 2e-08
Identities = 24/29 (82%), Positives = 26/29 (88%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFIST 34
F+ KH GPG+LSMANAGPNTNGSQFFI T
Sbjct: 95 FIKKHTGPGILSMANAGPNTNGSQFFICT 123
>CYP7_CAEEL (P52015) Peptidyl-prolyl cis-trans isomerase 7 (EC
5.2.1.8) (PPIase) (Rotamase) (Cyclophilin-7)
Length = 171
Score = 55.5 bits (132), Expect = 3e-08
Identities = 25/30 (83%), Positives = 26/30 (86%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F KH GPGVLSMANAGPNTNGSQFF+ TV
Sbjct: 95 FKEKHTGPGVLSMANAGPNTNGSQFFLCTV 124
>CYP3_CAEEL (P52011) Peptidyl-prolyl cis-trans isomerase 3 (EC
5.2.1.8) (PPIase) (Rotamase) (Cyclophilin-3)
Length = 173
Score = 55.5 bits (132), Expect = 3e-08
Identities = 25/30 (83%), Positives = 26/30 (86%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F KH GPGVLSMANAGPNTNGSQFF+ TV
Sbjct: 95 FKEKHTGPGVLSMANAGPNTNGSQFFLCTV 124
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.321 0.136 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,432,364
Number of Sequences: 164201
Number of extensions: 82322
Number of successful extensions: 236
Number of sequences better than 10.0: 109
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 128
Number of HSP's gapped (non-prelim): 109
length of query: 35
length of database: 59,974,054
effective HSP length: 11
effective length of query: 24
effective length of database: 58,167,843
effective search space: 1396028232
effective search space used: 1396028232
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0206b.1