BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0201.8
(841 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
N184_SCHPO (Q9P7M8) Nucleoporin nup184 (Nuclear pore protein nup... 33 2.4
EXT3_ARATH (Q9FS16) Extensin 3 precursor (AtExt3) (AtExt5) 33 2.4
DAF_CAVPO (Q60401) Complement decay-accelerating factor precursor 32 5.4
RNFD_BUCAP (Q8KA19) Electron transport complex protein rnfD 32 7.0
MYCD_MOUSE (Q8VIM5) Myocardin (SRF cofactor protein) (Basic SAP ... 32 9.1
EXT1_ARATH (Q38913) Extensin 1 precursor (AtExt1) (AtExt4) 32 9.1
>N184_SCHPO (Q9P7M8) Nucleoporin nup184 (Nuclear pore protein
nup184)
Length = 1564
Score = 33.5 bits (75), Expect = 2.4
Identities = 23/81 (28%), Positives = 40/81 (48%), Gaps = 5/81 (6%)
Query: 464 LLTVAKYATHKELKCNATIALSWYNCMHQQFHTREKFKEEF-RLQFVASRSATLEVKSTD 522
LL V +T+ + CN+ +A+SW+NCM + TR +EF L S E+ +
Sbjct: 223 LLRVIFLSTYSLVVCNSEMAISWFNCMKK---TRYLHDQEFMHLDIDTGFSMCKEITNVA 279
Query: 523 -ILSVNSVGAQFETSIVVETP 542
I+S+N + + + + P
Sbjct: 280 IIISINFISLEKQVLSFKDNP 300
>EXT3_ARATH (Q9FS16) Extensin 3 precursor (AtExt3) (AtExt5)
Length = 427
Score = 33.5 bits (75), Expect = 2.4
Identities = 13/29 (44%), Positives = 18/29 (61%), Gaps = 1/29 (3%)
Query: 63 PPPIYHHNPAP-YHNYPSQTQHSALSSPP 90
PPP+ H++P P YH+ P +H SPP
Sbjct: 234 PPPVKHYSPPPVYHSPPPPKKHYVYKSPP 262
Score = 33.5 bits (75), Expect = 2.4
Identities = 13/29 (44%), Positives = 18/29 (61%), Gaps = 1/29 (3%)
Query: 63 PPPIYHHNPAP-YHNYPSQTQHSALSSPP 90
PPP+ H++P P YH+ P +H SPP
Sbjct: 150 PPPVKHYSPPPVYHSPPPPKKHYVYKSPP 178
Score = 33.5 bits (75), Expect = 2.4
Identities = 13/29 (44%), Positives = 18/29 (61%), Gaps = 1/29 (3%)
Query: 63 PPPIYHHNPAP-YHNYPSQTQHSALSSPP 90
PPP+ H++P P YH+ P +H SPP
Sbjct: 318 PPPVKHYSPPPVYHSPPPPKKHYVYKSPP 346
Score = 33.5 bits (75), Expect = 2.4
Identities = 13/29 (44%), Positives = 18/29 (61%), Gaps = 1/29 (3%)
Query: 63 PPPIYHHNPAP-YHNYPSQTQHSALSSPP 90
PPP+ H++P P YH+ P +H SPP
Sbjct: 262 PPPVKHYSPPPVYHSPPPPKKHYVYKSPP 290
Score = 33.5 bits (75), Expect = 2.4
Identities = 13/29 (44%), Positives = 18/29 (61%), Gaps = 1/29 (3%)
Query: 63 PPPIYHHNPAP-YHNYPSQTQHSALSSPP 90
PPP+ H++P P YH+ P +H SPP
Sbjct: 66 PPPVKHYSPPPVYHSPPPPKKHYVYKSPP 94
Score = 33.5 bits (75), Expect = 2.4
Identities = 13/29 (44%), Positives = 18/29 (61%), Gaps = 1/29 (3%)
Query: 63 PPPIYHHNPAP-YHNYPSQTQHSALSSPP 90
PPP+ H++P P YH+ P +H SPP
Sbjct: 206 PPPVKHYSPPPVYHSPPPPKKHYVYKSPP 234
Score = 33.5 bits (75), Expect = 2.4
Identities = 13/29 (44%), Positives = 18/29 (61%), Gaps = 1/29 (3%)
Query: 63 PPPIYHHNPAP-YHNYPSQTQHSALSSPP 90
PPP+ H++P P YH+ P +H SPP
Sbjct: 178 PPPVKHYSPPPVYHSPPPPKKHYVYKSPP 206
Score = 33.5 bits (75), Expect = 2.4
Identities = 13/29 (44%), Positives = 18/29 (61%), Gaps = 1/29 (3%)
Query: 63 PPPIYHHNPAP-YHNYPSQTQHSALSSPP 90
PPP+ H++P P YH+ P +H SPP
Sbjct: 122 PPPVKHYSPPPVYHSPPPPKKHYVYKSPP 150
Score = 33.5 bits (75), Expect = 2.4
Identities = 13/29 (44%), Positives = 18/29 (61%), Gaps = 1/29 (3%)
Query: 63 PPPIYHHNPAP-YHNYPSQTQHSALSSPP 90
PPP+ H++P P YH+ P +H SPP
Sbjct: 94 PPPVKHYSPPPVYHSPPPPKKHYVYKSPP 122
Score = 33.5 bits (75), Expect = 2.4
Identities = 13/29 (44%), Positives = 18/29 (61%), Gaps = 1/29 (3%)
Query: 63 PPPIYHHNPAP-YHNYPSQTQHSALSSPP 90
PPP+ H++P P YH+ P +H SPP
Sbjct: 346 PPPVKHYSPPPVYHSPPPPKKHYVYKSPP 374
Score = 33.5 bits (75), Expect = 2.4
Identities = 13/29 (44%), Positives = 18/29 (61%), Gaps = 1/29 (3%)
Query: 63 PPPIYHHNPAP-YHNYPSQTQHSALSSPP 90
PPP+ H++P P YH+ P +H SPP
Sbjct: 290 PPPVKHYSPPPVYHSPPPPKKHYVYKSPP 318
Score = 32.7 bits (73), Expect = 4.1
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Query: 58 SIPPQP-----PPIYHHNPAP-YHNYPSQTQHSALSSPP 90
S PP P PP+ H++P P YH+ P +H SPP
Sbjct: 28 SSPPPPVKHYTPPVKHYSPPPVYHSPPPPKKHYEYKSPP 66
>DAF_CAVPO (Q60401) Complement decay-accelerating factor precursor
Length = 507
Score = 32.3 bits (72), Expect = 5.4
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 177 KTTVVVPPQKGVTVYHDESETTADPQQKPQVLSDAKPHTPTS 218
K+ V+PPQK T + TT P QKP ++ A P PT+
Sbjct: 285 KSPPVIPPQKPTTTSAPGTTTTL-PTQKPTTVNTAGPEVPTT 325
>RNFD_BUCAP (Q8KA19) Electron transport complex protein rnfD
Length = 349
Score = 32.0 bits (71), Expect = 7.0
Identities = 36/168 (21%), Positives = 71/168 (41%), Gaps = 25/168 (14%)
Query: 321 VDSTYALDSLLFKFLAKPGLFIISFDPGICTHTPKLAYRALTKCVAGDFILSHHVFDNSS 380
+ +TY + ++F L ++S PG+CT L + + F++ +F+
Sbjct: 11 ISNTYDVRKIMF-------LVVLSCIPGLCTEIYFFGCGVLIQTLL--FVIISLLFEII- 60
Query: 381 ERIYKEQQVNIEQFLMHSIMLRTPNLDSLVLASLIGTSLPALLGFIITSFDPGICNAIFS 440
I K ++ NI+ L + S + A L+G S P L + + F I
Sbjct: 61 --ILKMRRKNIKNSLF--------DYSSFLTAVLLGLSTPCALPWWMIIFSCFFAIVISK 110
Query: 441 LSYGDFSKCVYGDSRLSYLGLILLLTVAKYATHKELKCNATIALSWYN 488
YG + ++ + + Y+ L++ V A +++ +LS+YN
Sbjct: 111 YLYGGLGQNIFNPAMIGYVVLLISFPVHMTAWNEK-----NSSLSFYN 153
>MYCD_MOUSE (Q8VIM5) Myocardin (SRF cofactor protein) (Basic SAP
coiled-coil transcription activator 2)
Length = 935
Score = 31.6 bits (70), Expect = 9.1
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Query: 143 HQLDSWEKFREVFKLQFIQFRSEHIAASSGIVLEKTTVVVPPQKGVTVYHD 193
H L KFR V +L+ Q R++ A+ G+ +PP KG T +HD
Sbjct: 8 HSLLIRRKFRSVLQLRLQQRRTQEQLANQGL--------IPPLKGPTEFHD 50
>EXT1_ARATH (Q38913) Extensin 1 precursor (AtExt1) (AtExt4)
Length = 373
Score = 31.6 bits (70), Expect = 9.1
Identities = 15/38 (39%), Positives = 18/38 (46%), Gaps = 4/38 (10%)
Query: 57 RSIPP----QPPPIYHHNPAPYHNYPSQTQHSALSSPP 90
+S PP PP +YH P P H+Y Q SPP
Sbjct: 332 KSPPPPVHYSPPTVYHSPPPPVHHYSPPHQPYLYKSPP 369
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.322 0.135 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,103,540
Number of Sequences: 164201
Number of extensions: 4036926
Number of successful extensions: 10404
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 10307
Number of HSP's gapped (non-prelim): 66
length of query: 841
length of database: 59,974,054
effective HSP length: 119
effective length of query: 722
effective length of database: 40,434,135
effective search space: 29193445470
effective search space used: 29193445470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 70 (31.6 bits)
Lotus: description of TM0201.8