BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0201.13
(413 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 277 4e-74
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 259 9e-69
YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein 159 2e-38
M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810... 157 4e-38
YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein 96 2e-19
YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B) 96 2e-19
YJZ9_YEAST (P47100) Transposon Ty1 protein B 94 6e-19
YMU0_YEAST (Q04670) Transposon Ty1 protein B 92 2e-18
YME4_YEAST (Q04711) Transposon Ty1 protein B 92 2e-18
YMD9_YEAST (Q03434) Transposon Ty1 protein B 92 3e-18
YMT5_YEAST (Q04214) Transposon Ty1 protein B 91 5e-18
YJZ7_YEAST (P47098) Transposon Ty1 protein B 88 4e-17
M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240... 69 2e-11
PMIP_HUMAN (Q99797) Mitochondrial intermediate peptidase, mitoch... 31 6.6
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 277 bits (708), Expect = 4e-74
Identities = 152/390 (38%), Positives = 233/390 (58%), Gaps = 10/390 (2%)
Query: 17 SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFV 76
+AFLNG + EE+Y+ P G D+V KL K++YGLKQA R W+E L E EFV
Sbjct: 1005 TAFLNGTLKEEIYMRLPQGISCNS--DNVCKLNKAIYGLKQAARCWFEVFEQALKECEFV 1062
Query: 77 RGKVDTTLFC--KTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKY 134
VD ++ K ++ + V +YVDD++ + + + F + +F M+ + E+K+
Sbjct: 1063 NSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKH 1122
Query: 135 FLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLY 194
F+GI+++ + Y+ QS Y K++L KFNM TP+ P+ I + S + C
Sbjct: 1123 FIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPL-PSKINYELLNSDEDCNTPC 1181
Query: 195 RGMIGSLLYLT-ASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT 253
R +IG L+Y+ +RPD+ +V++ +R+ S +KR+LRYLKGT ++ L++KK
Sbjct: 1182 RSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKN 1241
Query: 254 S--EYKLSGYCDADYAGDRTERKSTSGNC-QFLGSNLVSWASKRQSTIALSTAEAEYISA 310
E K+ GY D+D+AG +RKST+G + NL+ W +KRQ+++A S+ EAEY++
Sbjct: 1242 LAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMAL 1301
Query: 311 AICSTQMLWMKH*LEDYQI-LESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDY 369
+ LW+K L I LE+ I IY DN IS++ NP H RAKHI++KYHF R+
Sbjct: 1302 FEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQ 1361
Query: 370 VQKGVLLLKFVDTDHQWADIFTKPLAEDRF 399
VQ V+ L+++ T++Q ADIFTKPL RF
Sbjct: 1362 VQNNVICLEYIPTENQLADIFTKPLPAARF 1391
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 259 bits (662), Expect = 9e-69
Identities = 144/402 (35%), Positives = 231/402 (56%), Gaps = 11/402 (2%)
Query: 17 SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFV 76
+AFL+G + EE+Y+ QP GFE K V KL KSLYGLKQAPR WY + SF+ ++
Sbjct: 925 TAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYL 984
Query: 77 RGKVDTTLFCKTYKDD-ILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYF 135
+ D ++ K + ++ +I+ +YVDD++ ++ L + + F+M +G +
Sbjct: 985 KTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQI 1044
Query: 136 LGIQV--DQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKE------DKSG 187
LG+++ ++T ++ Q KY + +L++FNM + TP+ L K+ ++ G
Sbjct: 1045 LGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKG 1104
Query: 188 KVCQKLYRGMIGSLLY-LTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNL 246
+ + Y +GSL+Y + +RPDI +V + +RF +P + H AVK ILRYL+GTT
Sbjct: 1105 NMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGD 1164
Query: 247 GLMYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAE 306
L + S+ L GY DAD AGD RKS++G +SW SK Q +ALST EAE
Sbjct: 1165 CLCFGG-SDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAE 1223
Query: 307 YISAAICSTQMLWMKH*LEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFI 366
YI+A +M+W+K L++ + + +YCD+ +AI LSKN + H+R KHI+V+YH+I
Sbjct: 1224 YIAATETGKEMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWI 1283
Query: 367 RDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 408
R+ V L + + T+ AD+ TK + ++F + + M
Sbjct: 1284 REMVDDESLKVLKISTNENPADMLTKVVPRNKFELCKELVGM 1325
>YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein
Length = 308
Score = 159 bits (401), Expect = 2e-38
Identities = 94/305 (30%), Positives = 164/305 (52%), Gaps = 17/305 (5%)
Query: 17 SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFV 76
+AFLN + E +YV QPPGF +E+ PD+V++L +YGLKQAP W E +++ L + F
Sbjct: 5 TAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKKIGFC 64
Query: 77 RGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFL 136
R + + L+ ++ D + + +YVDD++ + + + + + + M +G++ FL
Sbjct: 65 RHEGEHGLYFRSTSDGPIYIGVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKVDKFL 124
Query: 137 GIQVDQTPEG-------TYIHQSKYTKELLKKFNMLESTVAKT-PMHPTCILEKEDKSGK 188
G+ + Q+ G YI ++ E + F + ++ + + P+ T +D +
Sbjct: 125 GLNIHQSTNGDITLSLQDYIAKAASESE-INTFKLTQTPLCNSKPLFETTSPHLKDITP- 182
Query: 189 VCQKLYRGMIGSLLY-LTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLG 247
Y+ ++G LL+ RPDI + V L +RF +PR HL + +R+LRYL T ++
Sbjct: 183 -----YQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMC 237
Query: 248 LMYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKR-QSTIALSTAEAE 306
L Y+ S+ L+ YCDA + ST G L V+W+SK+ + I + + EAE
Sbjct: 238 LKYRSGSQVALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAE 297
Query: 307 YISAA 311
YI+A+
Sbjct: 298 YITAS 302
>M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810
(ORF240b)
Length = 240
Score = 157 bits (398), Expect = 4e-38
Identities = 76/222 (34%), Positives = 130/222 (58%), Gaps = 1/222 (0%)
Query: 98 IYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKE 157
+YVDDI+ ++ +L + + F M +G + YFLGIQ+ P G ++ Q+KY ++
Sbjct: 5 LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64
Query: 158 LLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRGMIGSLLYLTASRPDILFSVHL 217
+L ML+ TP+ P + + +R ++G+L YLT +RPDI ++V++
Sbjct: 65 ILNNAGMLDCKPMSTPL-PLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNI 123
Query: 218 CARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYKLSGYCDADYAGDRTERKSTS 277
+ +P +KR+LRY+KGT GL K S+ + +CD+D+AG + R+ST+
Sbjct: 124 VCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTT 183
Query: 278 GNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLW 319
G C FLG N++SW++KRQ T++ S+ E EY + A+ + ++ W
Sbjct: 184 GFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein
Length = 1803
Score = 95.9 bits (237), Expect = 2e-19
Identities = 108/423 (25%), Positives = 192/423 (44%), Gaps = 55/423 (13%)
Query: 18 AFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFL-----LE 72
AFL + EE+Y+ P D + V KL K+LYGLKQ+P+ W + L +L +
Sbjct: 1388 AFLYAKLEEEIYIPHP---HDRRC---VVKLNKALYGLKQSPKEWNDHLRQYLNGIGLKD 1441
Query: 73 NEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGEL 132
N + G T +D L++ +YVDD + ++N+ EF +++ FE+ + G L
Sbjct: 1442 NSYTPGLYQT-------EDKNLMIAVYVDDCVIAASNEQRLDEFINKLKSNFELKITGTL 1494
Query: 133 ------KYFLGIQ---------VDQTPEGTYIHQ--SKYTKEL--LKKFNMLESTVAKTP 173
LG+ +D T + ++I++ KY +EL ++K ++ + K
Sbjct: 1495 IDDVLDTDILGMDLVYNKRLGTIDLTLK-SFINRMDKKYNEELKKIRKSSIPHMSTYKID 1553
Query: 174 MHPTCILEKEDKSGKVCQKLYRGMIGSLLYLT-ASRPDILFSVHLCARFQSDPRETHLTA 232
+ E++ + KL + ++G L Y+ R DI F+V AR + P E
Sbjct: 1554 PKKDVLQMSEEEFRQGVLKLQQ-LLGELNYVRHKCRYDIEFAVKKVARLVNYPHERVFYM 1612
Query: 233 VKRILRYLKGTTNLGLMYKK--TSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSW 290
+ +I++YL ++G+ Y + + K+ DA G + +S G + G N+ +
Sbjct: 1613 IYKIIQYLVRYKDIGIHYDRDCNKDKKVIAITDAS-VGSEYDAQSRIGVILWYGMNIFNV 1671
Query: 291 ASKRQSTIALSTAEAE----YISAAICSTQMLWMKH*LEDYQILESNIPIYCDNTAAISL 346
S + + +S+ EAE Y A T + +K E ++I + D+ AI
Sbjct: 1672 YSNKSTNRCVSSTEAELHAIYEGYADSETLKVTLKELGEGD---NNDIVMITDSKPAIQG 1728
Query: 347 SKNPILHSRAKHIEVKYHFIRDYV-QKGVLLLKFVDTDHQWADIFTKPLAED---RFNFI 402
+ K +K I++ + +K + LLK + AD+ TKP++ RF +
Sbjct: 1729 LNRSYQQPKEKFTWIKTEIIKEKIKEKSIKLLKITGKGN-IADLLTKPVSASDFKRFIQV 1787
Query: 403 LKN 405
LKN
Sbjct: 1788 LKN 1790
>YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B)
Length = 1770
Score = 95.9 bits (237), Expect = 2e-19
Identities = 101/424 (23%), Positives = 195/424 (45%), Gaps = 39/424 (9%)
Query: 6 SDYLSWRLRM*SAFLNGYISEEVYVHQPP--GFEDEKKPDHVFKLKKSLYGLKQAPRAWY 63
+DY +L + SA+L I EE+Y+ PP G D+ + +L+KSLYGLKQ+ WY
Sbjct: 1353 NDYYITQLDISSAYLYADIKEELYIRPPPHLGLNDK-----LLRLRKSLYGLKQSGANWY 1407
Query: 64 ERLSSFLL---ENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMM 120
E + S+L+ + + VRG + +K+ + + ++VDD+I S + + K+ +
Sbjct: 1408 ETIKSYLINCCDMQEVRG------WSCVFKNSQVTICLFVDDMILFSKDLNANKKIITTL 1461
Query: 121 QAEFEMSMM------GELKY-FLGIQVD-QTPEGTYIHQSKYTKELLKKFNMLESTVAK- 171
+ +++ ++ E++Y LG+++ Q + + K E L K N+ + K
Sbjct: 1462 KKQYDTKIINLGESDNEIQYDILGLEIKYQRSKYMKLGMEKSLTEKLPKLNVPLNPKGKK 1521
Query: 172 --TPMHPTCILEKED---KSGKVCQKLY--RGMIGSLLYLTAS-RPDILFSVHLCARFQS 223
P P +++++ + +K++ + +IG Y+ R D+L+ ++ A+
Sbjct: 1522 LRAPGQPGHYIDQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHIL 1581
Query: 224 DPRETHLTAVKRILRYLKGTTNLGLMYKKTS----EYKLSGYCDADYAGDRTERKSTSGN 279
P L +++++ T + L++ K + KL DA Y G++ KS GN
Sbjct: 1582 FPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTKPDNKLVAISDASY-GNQPYYKSQIGN 1640
Query: 280 CQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKH*LEDYQILESNIPIYCD 339
L ++ S + S ST EAE + + + + H +++ + D
Sbjct: 1641 IFLLNGKVIGGKSTKASLTCTSTTEAEIHAVSEAIPLLNNLSHLVQELNKKPIIKGLLTD 1700
Query: 340 NTAAISLSKNPILHS-RAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDR 398
+ + IS+ K+ R + K +RD V L + +++T AD+ TKPL
Sbjct: 1701 SRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKT 1760
Query: 399 FNFI 402
F +
Sbjct: 1761 FKLL 1764
>YJZ9_YEAST (P47100) Transposon Ty1 protein B
Length = 1755
Score = 94.0 bits (232), Expect = 6e-19
Identities = 102/423 (24%), Positives = 188/423 (44%), Gaps = 37/423 (8%)
Query: 6 SDYLSWRLRM*SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYER 65
++Y +L + SA+L I EE+Y+ PP D + +LKKSLYGLKQ+ WYE
Sbjct: 1338 NNYYITQLDISSAYLYADIKEELYIRPPPHLGMN---DKLIRLKKSLYGLKQSGANWYET 1394
Query: 66 LSSFLLEN---EFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQA 122
+ S+L++ E VRG + +K+ + + ++VDD++ S N + K E ++
Sbjct: 1395 IKSYLIQQCGMEEVRG------WSCVFKNSQVTICLFVDDMVLFSKNLNSNKRIIEKLKM 1448
Query: 123 EFEMSMMG------ELKY-FLGIQVDQTPEGTY--IHQSKYTKELLKKFNM---LESTVA 170
+++ ++ E++Y LG+++ + G Y + E + K N+ +
Sbjct: 1449 QYDTKIINLGESDEEIQYDILGLEI-KYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKL 1507
Query: 171 KTPMHPTCI-----LEKEDKSGKVCQKLYRGMIGSLLYLTAS-RPDILFSVHLCARFQSD 224
P P LE E+ K+ + +IG Y+ R D+L+ ++ A+
Sbjct: 1508 SAPGQPGLYIDQQELELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILF 1567
Query: 225 PRETHLTAVKRILRYLKGTTNLGLMYKKTSEY----KLSGYCDADYAGDRTERKSTSGNC 280
P + L +++++ T + L++ K+ KL DA Y G++ KS GN
Sbjct: 1568 PSKQVLDMTYELIQFIWNTRDKQLIWHKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNI 1626
Query: 281 QFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKH*LEDYQILESNIPIYCDN 340
L ++ S + S ST EAE + + + + + +++ + D+
Sbjct: 1627 YLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQELDKKPITKGLLTDS 1686
Query: 341 TAAIS-LSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRF 399
+ IS + N R + K +RD V L + +++T AD+ TKPL F
Sbjct: 1687 KSTISIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTF 1746
Query: 400 NFI 402
+
Sbjct: 1747 KLL 1749
>YMU0_YEAST (Q04670) Transposon Ty1 protein B
Length = 1328
Score = 92.4 bits (228), Expect = 2e-18
Identities = 102/423 (24%), Positives = 188/423 (44%), Gaps = 37/423 (8%)
Query: 6 SDYLSWRLRM*SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYER 65
++Y +L + SA+L I EE+Y+ PP D + +LKKSLYGLKQ+ WYE
Sbjct: 911 NNYYITQLDISSAYLYADIKEELYIRPPPHLGMN---DKLIRLKKSLYGLKQSGANWYET 967
Query: 66 LSSFLLEN---EFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQA 122
+ S+L++ E VRG + +K+ + + ++VDD+I S + + K+ ++
Sbjct: 968 IKSYLIKQCGMEEVRG------WSCVFKNSQVTICLFVDDMILFSKDLNANKKIITTLKK 1021
Query: 123 EFEMSMM------GELKY-FLGIQVDQTPEGTY--IHQSKYTKELLKKFNM---LESTVA 170
+++ ++ E++Y LG+++ + G Y + E + K N+ +
Sbjct: 1022 QYDTKIINLGESDNEIQYDILGLEI-KYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKL 1080
Query: 171 KTPMHPTCI-----LEKEDKSGKVCQKLYRGMIGSLLYLTAS-RPDILFSVHLCARFQSD 224
P P LE E+ K+ + +IG Y+ R D+L+ ++ A+
Sbjct: 1081 SAPGQPGLYIDQQELELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILF 1140
Query: 225 PRETHLTAVKRILRYLKGTTNLGLMYKKTSEY----KLSGYCDADYAGDRTERKSTSGNC 280
P + L +++++ T + L++ K+ KL DA Y G++ KS GN
Sbjct: 1141 PSKQVLDMTYELIQFIWNTRDKQLIWHKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNI 1199
Query: 281 QFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKH*LEDYQILESNIPIYCDN 340
L ++ S + S ST EAE + + + + H +++ + D+
Sbjct: 1200 YLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSHLVQELNKKPITKGLLTDS 1259
Query: 341 TAAIS-LSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRF 399
+ IS + N R + K +RD V L + +++T AD+ TKPL F
Sbjct: 1260 KSTISIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTF 1319
Query: 400 NFI 402
+
Sbjct: 1320 KLL 1322
>YME4_YEAST (Q04711) Transposon Ty1 protein B
Length = 1328
Score = 92.0 bits (227), Expect = 2e-18
Identities = 99/423 (23%), Positives = 191/423 (44%), Gaps = 37/423 (8%)
Query: 6 SDYLSWRLRM*SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYER 65
++Y +L + SA+L I EE+Y+ PP D + +LKKSLYGLKQ+ WYE
Sbjct: 911 NNYYITQLDISSAYLYADIKEELYIRPPPHLGMN---DKLIRLKKSLYGLKQSGANWYET 967
Query: 66 LSSFLLEN---EFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQA 122
+ S+L++ E VRG + +K+ + + ++VDD+I S + + K+ ++
Sbjct: 968 IKSYLIKQCGMEEVRG------WSCVFKNSQVTICLFVDDMILFSKDLNANKKIITTLKK 1021
Query: 123 EFEMSMM------GELKY-FLGIQVDQTPEGTY--IHQSKYTKELLKKFNM---LESTVA 170
+++ ++ E++Y LG+++ + G Y + E + K N+ +
Sbjct: 1022 QYDTKIINLGESDNEIQYDILGLEI-KYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKL 1080
Query: 171 KTPMHPTCILEKED---KSGKVCQKLY--RGMIGSLLYLTAS-RPDILFSVHLCARFQSD 224
P P +++++ + +K++ + +IG Y+ R D+L+ ++ A+
Sbjct: 1081 SAPGQPGLYIDQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILF 1140
Query: 225 PRETHLTAVKRILRYLKGTTNLGLMYKKTS----EYKLSGYCDADYAGDRTERKSTSGNC 280
P L +++++ T + L++ K + KL DA Y G++ KS GN
Sbjct: 1141 PSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNI 1199
Query: 281 QFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKH*LEDYQILESNIPIYCDN 340
L ++ S + S ST EAE + + + + H +++ + D+
Sbjct: 1200 YLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSHLVQELNKKPITKGLLTDS 1259
Query: 341 TAAIS-LSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRF 399
+ IS + N R + K +RD V L + +++T AD+ TKPL F
Sbjct: 1260 KSTISIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTF 1319
Query: 400 NFI 402
+
Sbjct: 1320 KLL 1322
>YMD9_YEAST (Q03434) Transposon Ty1 protein B
Length = 1328
Score = 91.7 bits (226), Expect = 3e-18
Identities = 98/423 (23%), Positives = 192/423 (45%), Gaps = 37/423 (8%)
Query: 6 SDYLSWRLRM*SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYER 65
++Y +L + SA+L I EE+Y+ PP D + +LKKSLYGLKQ+ WYE
Sbjct: 911 NNYYITQLDISSAYLYADIKEELYIRPPPHLGMN---DKLIRLKKSLYGLKQSGANWYET 967
Query: 66 LSSFLLEN---EFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQA 122
+ S+L++ E VRG + +K+ + + ++VDD+I S + + K+ ++
Sbjct: 968 IKSYLIKQCGMEEVRG------WSCVFKNSQVTICLFVDDMILFSKDLNANKKIITTLKK 1021
Query: 123 EFEMSMM------GELKY-FLGIQVDQTPEGTY--IHQSKYTKELLKKFNM---LESTVA 170
+++ ++ E++Y LG+++ + G Y + E + K N+ +
Sbjct: 1022 QYDTKIINLGESDNEIQYDILGLEI-KYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKL 1080
Query: 171 KTPMHPTCILEKED---KSGKVCQKLY--RGMIGSLLYLTAS-RPDILFSVHLCARFQSD 224
P P +++++ + +K++ + +IG Y+ R D+L+ ++ A+
Sbjct: 1081 SAPGQPGLYIDQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILF 1140
Query: 225 PRETHLTAVKRILRYLKGTTNLGLMYKKTS----EYKLSGYCDADYAGDRTERKSTSGNC 280
P L +++++ T + L++ K + KL DA Y G++ KS GN
Sbjct: 1141 PSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNI 1199
Query: 281 QFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKH*LEDYQILESNIPIYCDN 340
L ++ S + S ST EAE + + + + + +++ + D+
Sbjct: 1200 YLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQELNKKPIIKGLLTDS 1259
Query: 341 TAAISLSKNPILHS-RAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRF 399
+ IS+ K+ R + K +RD V L + +++T AD+ TKPL F
Sbjct: 1260 RSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTF 1319
Query: 400 NFI 402
+
Sbjct: 1320 KLL 1322
>YMT5_YEAST (Q04214) Transposon Ty1 protein B
Length = 1328
Score = 90.9 bits (224), Expect = 5e-18
Identities = 100/423 (23%), Positives = 188/423 (43%), Gaps = 37/423 (8%)
Query: 6 SDYLSWRLRM*SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYER 65
++Y +L + SA+L I EE+Y+ PP D + +LKKSLYGLKQ+ WYE
Sbjct: 911 NNYYITQLDISSAYLYADIKEELYIRPPPHLGMN---DKLIRLKKSLYGLKQSGANWYET 967
Query: 66 LSSFLLEN---EFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQA 122
+ S+L++ E VRG + +++ + + ++VDD++ S N + K + ++
Sbjct: 968 IKSYLIKQCGMEEVRG------WSCVFENSQVTICLFVDDMVLFSKNLNSNKRIIDKLKM 1021
Query: 123 EFEMSMMG------ELKY-FLGIQVDQTPEGTY--IHQSKYTKELLKKFNM---LESTVA 170
+++ ++ E++Y LG+++ + G Y + E + K N+ +
Sbjct: 1022 QYDTKIINLGESDEEIQYDILGLEI-KYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKL 1080
Query: 171 KTPMHPTCI-----LEKEDKSGKVCQKLYRGMIGSLLYLTAS-RPDILFSVHLCARFQSD 224
P P LE E+ K+ + +IG Y+ R D+L+ ++ A+
Sbjct: 1081 SAPGQPGLYIDQQELELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILF 1140
Query: 225 PRETHLTAVKRILRYLKGTTNLGLMYKKTSEY----KLSGYCDADYAGDRTERKSTSGNC 280
P + L +++++ T + L++ K+ KL DA Y G++ KS GN
Sbjct: 1141 PSKQVLDMTYELIQFIWNTRDKQLIWHKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNI 1199
Query: 281 QFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKH*LEDYQILESNIPIYCDN 340
L ++ S + S ST EAE + + + + + +++ + D+
Sbjct: 1200 YLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQELDKKPITKGLLTDS 1259
Query: 341 TAAIS-LSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRF 399
+ IS + N R + K +RD V L + +++T AD+ TKPL F
Sbjct: 1260 KSTISIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTF 1319
Query: 400 NFI 402
+
Sbjct: 1320 KLL 1322
>YJZ7_YEAST (P47098) Transposon Ty1 protein B
Length = 1755
Score = 88.2 bits (217), Expect = 4e-17
Identities = 97/423 (22%), Positives = 191/423 (44%), Gaps = 37/423 (8%)
Query: 6 SDYLSWRLRM*SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYER 65
++Y +L + SA+L I EE+Y+ PP D + +LKKS YGLKQ+ WYE
Sbjct: 1338 NNYYITQLDISSAYLYADIKEELYIRPPPHLGMN---DKLIRLKKSHYGLKQSGANWYET 1394
Query: 66 LSSFLLEN---EFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQA 122
+ S+L++ E VRG + +K+ + + ++VDD+I S + + K+ ++
Sbjct: 1395 IKSYLIKQCGMEEVRG------WSCVFKNSQVTICLFVDDMILFSKDLNANKKIITTLKK 1448
Query: 123 EFEMSMM------GELKY-FLGIQVDQTPEGTY--IHQSKYTKELLKKFNM---LESTVA 170
+++ ++ E++Y LG+++ + G Y + E + K N+ +
Sbjct: 1449 QYDTKIINLGESDNEIQYDILGLEI-KYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKL 1507
Query: 171 KTPMHPTCILEKED---KSGKVCQKLY--RGMIGSLLYLTAS-RPDILFSVHLCARFQSD 224
P P +++++ + +K++ + +IG Y+ R D+L+ ++ A+
Sbjct: 1508 SAPGQPGLYIDQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILF 1567
Query: 225 PRETHLTAVKRILRYLKGTTNLGLMYKKTS----EYKLSGYCDADYAGDRTERKSTSGNC 280
P L +++++ T + L++ K + KL DA Y G++ KS GN
Sbjct: 1568 PSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNI 1626
Query: 281 QFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKH*LEDYQILESNIPIYCDN 340
L ++ S + S ST EAE + + + + + +++ + D+
Sbjct: 1627 FLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQELNKKPIIKGLLTDS 1686
Query: 341 TAAISLSKNPILHS-RAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRF 399
+ IS+ K+ R + K +RD V L + +++T AD+ TKPL F
Sbjct: 1687 RSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTF 1746
Query: 400 NFI 402
+
Sbjct: 1747 KLL 1749
>M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240
(ORF111a)
Length = 111
Score = 69.3 bits (168), Expect = 2e-11
Identities = 31/82 (37%), Positives = 50/82 (60%)
Query: 202 LYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYKLSGY 261
+YLT +RPD+ F+V+ ++F S R + AV ++L Y+KGT GL Y TS+ +L +
Sbjct: 1 MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60
Query: 262 CDADYAGDRTERKSTSGNCQFL 283
D+D+A R+S +G C +
Sbjct: 61 ADSDWASCPDTRRSVTGFCSLV 82
>PMIP_HUMAN (Q99797) Mitochondrial intermediate peptidase,
mitochondrial precursor (EC 3.4.24.59) (MIP)
Length = 713
Score = 30.8 bits (68), Expect = 6.6
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 126 MSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDK 185
+ + GE G+ PEG +I Q K L+K +L TP P +L ++
Sbjct: 56 LDLFGERARLFGVPELSAPEGFHIAQEK----ALRKTELLVDRACSTPPGPQTVLIFDEL 111
Query: 186 SGKVCQ 191
S +C+
Sbjct: 112 SDSLCR 117
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.324 0.138 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,314,691
Number of Sequences: 164201
Number of extensions: 1975766
Number of successful extensions: 5057
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5000
Number of HSP's gapped (non-prelim): 15
length of query: 413
length of database: 59,974,054
effective HSP length: 113
effective length of query: 300
effective length of database: 41,419,341
effective search space: 12425802300
effective search space used: 12425802300
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0201.13