BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0199.9
         (56 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

VATC_ARATH (Q9SDS7) Vacuolar ATP synthase subunit C (EC 3.6.3.14...    71  5e-13
VATC_HORVU (Q9SCB9) Vacuolar ATP synthase subunit C (EC 3.6.3.14...    51  5e-07
YCF2_PSINU (Q8WHW9) Protein ycf2                                       29  2.0
VATC_HUMAN (P21283) Vacuolar ATP synthase subunit C (EC 3.6.3.14...    29  2.7
VATC_MOUSE (Q9Z1G3) Vacuolar ATP synthase subunit C (EC 3.6.3.14...    27  7.8
VATC_BOVIN (P21282) Vacuolar ATP synthase subunit C (EC 3.6.3.14...    27  7.8

>VATC_ARATH (Q9SDS7) Vacuolar ATP synthase subunit C (EC 3.6.3.14)
          (V-ATPase C subunit) (Vacuolar proton pump C subunit)
          Length = 375

 Score = 71.2 bits (173), Expect = 5e-13
 Identities = 30/38 (78%), Positives = 35/38 (91%)

Query: 5  WWVVSLPVHNSASELWNRLQQNVSKHSFDTPLYRFNIP 42
          +WVVSLPV +SAS LWNRLQ+ +SKHSFDTP+YRFNIP
Sbjct: 5  YWVVSLPVKDSASSLWNRLQEQISKHSFDTPVYRFNIP 42


>VATC_HORVU (Q9SCB9) Vacuolar ATP synthase subunit C (EC 3.6.3.14)
          (V-ATPase C subunit) (Vacuolar proton pump C subunit)
          Length = 354

 Score = 51.2 bits (121), Expect = 5e-07
 Identities = 25/60 (41%), Positives = 38/60 (62%), Gaps = 7/60 (11%)

Query: 2  AVVWWVVSLPVHNS-----ASELWNRLQQNVSKHSFDTPLYRFNIPISGSEP*TLSAMIS 56
          A  +W+ +LPV +       + LW RLQ+ +S+HSFDTPLYRF +P     P TL ++++
Sbjct: 2  ATRYWIAALPVADDNVAAGKTALWARLQEAISRHSFDTPLYRFTVP--DLRPGTLDSLLA 59


>YCF2_PSINU (Q8WHW9) Protein ycf2
          Length = 2313

 Score = 29.3 bits (64), Expect = 2.0
 Identities = 12/32 (37%), Positives = 19/32 (58%)

Query: 12   VHNSASELWNRLQQNVSKHSFDTPLYRFNIPI 43
            + NS + LW  L+  +  +SFD  +YRF+  I
Sbjct: 1333 IKNSITYLWVNLEFKLKAYSFDNKIYRFDSSI 1364


>VATC_HUMAN (P21283) Vacuolar ATP synthase subunit C (EC 3.6.3.14)
          (V-ATPase C subunit) (Vacuolar proton pump C subunit)
          Length = 382

 Score = 28.9 bits (63), Expect = 2.7
 Identities = 11/38 (28%), Positives = 20/38 (51%)

Query: 5  WWVVSLPVHNSASELWNRLQQNVSKHSFDTPLYRFNIP 42
          +W++S P   +  + W +L    SK++      +FNIP
Sbjct: 4  FWLISAPGEKTCQQTWEKLHAATSKNNNLAVTSKFNIP 41


>VATC_MOUSE (Q9Z1G3) Vacuolar ATP synthase subunit C (EC 3.6.3.14)
          (V-ATPase C subunit) (Vacuolar proton pump C subunit)
          Length = 382

 Score = 27.3 bits (59), Expect = 7.8
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query: 5  WWVVSLPVHNSASELWNRLQQNVSKHSFDTPLYRFNIP 42
          +W++S P   +  + W +L    +K++      +FNIP
Sbjct: 4  FWLISAPGEKTCQQTWEKLHAATTKNNNLAVSSKFNIP 41


>VATC_BOVIN (P21282) Vacuolar ATP synthase subunit C (EC 3.6.3.14)
          (V-ATPase C subunit) (Vacuolar proton pump C subunit)
          Length = 382

 Score = 27.3 bits (59), Expect = 7.8
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query: 5  WWVVSLPVHNSASELWNRLQQNVSKHSFDTPLYRFNIP 42
          +W++S P   +  + W +L    +K++      +FNIP
Sbjct: 4  FWLISAPGEKTCQQTWEKLHAATTKNNNLAVSSKFNIP 41


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.327    0.135    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,037,183
Number of Sequences: 164201
Number of extensions: 160744
Number of successful extensions: 498
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 492
Number of HSP's gapped (non-prelim): 6
length of query: 56
length of database: 59,974,054
effective HSP length: 32
effective length of query: 24
effective length of database: 54,719,622
effective search space: 1313270928
effective search space used: 1313270928
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.3 bits)