BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0199.3
(462 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SENT_CAEEL (Q09353) Probable sentrin-specific protease (EC 3.4.2... 40 0.010
SEN1_HUMAN (Q9P0U3) Sentrin-specific protease 1 (EC 3.4.22.-) (S... 40 0.017
H1_PARAN (P02256) Histone H1, gonadal 40 0.017
SEN1_MOUSE (P59110) Sentrin-specific protease 1 (EC 3.4.22.-) (S... 39 0.022
H14_HUMAN (P10412) Histone H1.4 (Histone H1b) 39 0.022
ULP1_SCHPO (O42957) Ubiquitin-like-specific protease 1 (EC 3.4.2... 39 0.037
H1_LYTPI (P06144) Late histone H1 38 0.048
H15_HUMAN (P16401) Histone H1.5 (Histone H1a) 38 0.048
YNH2_SCHPO (O13612) Putative thiol protease C32H8.02c (EC 3.4.22.-) 37 0.082
SEN5_MACFA (Q8WP32) Sentrin-specific protease 5 (EC 3.4.22.-) (S... 37 0.082
SEN5_HUMAN (Q96HI0) Sentrin-specific protease 5 (EC 3.4.22.-) (S... 37 0.082
H1A_XENLA (P06892) Histone H1A 37 0.11
H13_MOUSE (P43277) Histone H1.3 (H1 VAR.4) (H1d) 37 0.11
RS6_AEDAE (Q9U761) 40S ribosomal protein S6 37 0.14
H11R_CHICK (P08288) Histone H1.11R 37 0.14
IF2P_YEAST (P39730) Eukaryotic translation initiation factor 5B ... 36 0.18
H14_MOUSE (P43274) Histone H1.4 (H1 VAR.2) (H1e) 36 0.18
H15_MOUSE (P43276) Histone H1.5 (H1 VAR.5) (H1b) 35 0.31
CYL2_HUMAN (Q14093) Cylicin II (Multiple-band polypeptide II) 35 0.31
NFH_HUMAN (P12036) Neurofilament triplet H protein (200 kDa neur... 35 0.41
>SENT_CAEEL (Q09353) Probable sentrin-specific protease (EC
3.4.22.-)
Length = 697
Score = 40.4 bits (93), Expect = 0.010
Identities = 55/270 (20%), Positives = 108/270 (39%), Gaps = 47/270 (17%)
Query: 187 QAKKQVDKGKKD-------VGQGKRAPGQAKKQADKGTEIQPLGASSKDKLQNCKFVWAY 239
Q Q+ K K+D + +G R+ + + D ++ G + + K++ K
Sbjct: 413 QNSYQLSKQKEDKLLEEARIREGHRSQTRGDRLEDVRKRLELQGIAIRPKVEKKKV---- 468
Query: 240 ARSVLKSEDLLKIPMPENIL------NTNTEEEFVE----QIGEEQVNEIYYHTKLSASV 289
+D + +P + L N E+FV+ QI ++ + + L+ +
Sbjct: 469 -------DDFMALPDAADALVERAWSGGNPNEQFVDAFSIQICKKDLATLSGLHWLNDEI 521
Query: 290 ICVYMRFLYSEVLVQNQLTERFFFLSPHNLSAYESRVSQYIADALKQNEQPNRVTF---- 345
I Y++ + ++ + + F N Y + VS+ A + + + F
Sbjct: 522 INFYLQLICDRSNGDSKYPKIYAF----NTFFYSNIVSKGYASVKRWTRKVDIFAFDIVL 577
Query: 346 APYNMGDHWVLLVIYTSEFAIEYFDS-FDGEPTDDVHMKNIFDAGLMIYHANSNDVPKKK 404
P ++G HW + VI E IE++DS +DG + A A S D K
Sbjct: 578 VPVHLGMHWCMAVIDMGEKKIEFYDSLYDGNTA-------VLPALRGYLEAESLDKKKTA 630
Query: 405 VKYIKW---RKMKCPKQKNLTDCGYYVLKY 431
+ + W + P+Q+N +DCG + ++
Sbjct: 631 MNFSGWTIQQMTDIPRQQNGSDCGVFSCQF 660
>SEN1_HUMAN (Q9P0U3) Sentrin-specific protease 1 (EC 3.4.22.-)
(Sentrin/SUMO-specific protease SENP1)
Length = 643
Score = 39.7 bits (91), Expect = 0.017
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 14/95 (14%)
Query: 343 VTFAPYNMGDHWVLLVIYTSEFAIEYFDSFDGEPTDDVHMKNIFDAGLMIYHANSNDVPK 402
+ P ++G HW L V+ + I Y+DS G + +++ + + K
Sbjct: 523 ILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEACR--------ILLQYLKQESIDK 574
Query: 403 KKVKY------IKWRKMKCPKQKNLTDCGYYVLKY 431
K+ ++ + +K + P+Q N +DCG + KY
Sbjct: 575 KRKEFDTNGWQLFSKKSQIPQQMNGSDCGMFACKY 609
>H1_PARAN (P02256) Histone H1, gonadal
Length = 248
Score = 39.7 bits (91), Expect = 0.017
Identities = 26/69 (37%), Positives = 36/69 (51%), Gaps = 4/69 (5%)
Query: 147 KATSRAKGITAVQAKKPAGQVKKPAERANKPVAQGEKVHEQAKKQVDKGKKDVGQGKRAP 206
K + AK A +AKK KK A++A KP + K ++ K+ K KK KR+P
Sbjct: 158 KKAAAAKRKAAAKAKKAKKPKKKAAKKAKKPAKKSPKKAKKPAKKSPKKKK----AKRSP 213
Query: 207 GQAKKQADK 215
+AKK A K
Sbjct: 214 KKAKKAAGK 222
Score = 38.9 bits (89), Expect = 0.028
Identities = 31/102 (30%), Positives = 44/102 (42%), Gaps = 4/102 (3%)
Query: 127 VAWPKRLVSTMTPASSDNNHKATSRAKGITAVQAKKPAGQVKKPAERA-NKPVAQGEKVH 185
VA PK+ T A + A ++ AK+ A KK A A K A+ +K
Sbjct: 116 VAKPKKAKKTSAAAKAKKAKAAAAKKARKAKAAAKRKAALAKKKAAAAKRKAAAKAKKAK 175
Query: 186 EQAKKQVDKGKKDVGQGKRAPGQAKKQADKGTEIQPLGASSK 227
+ KK K KK K++P +AKK A K + + S K
Sbjct: 176 KPKKKAAKKAKK---PAKKSPKKAKKPAKKSPKKKKAKRSPK 214
Score = 32.0 bits (71), Expect = 3.4
Identities = 22/70 (31%), Positives = 38/70 (53%), Gaps = 5/70 (7%)
Query: 147 KATSRAKGITAVQAKKPAGQ----VKKPAERANKPVAQGEKVHEQAKKQVDKGKKDVGQG 202
K + K A +AKKPA + KKPA+++ K + ++ ++AKK K K +
Sbjct: 172 KKAKKPKKKAAKKAKKPAKKSPKKAKKPAKKSPKK-KKAKRSPKKAKKAAGKRKPAAKKA 230
Query: 203 KRAPGQAKKQ 212
+R+P +A K+
Sbjct: 231 RRSPRKAGKR 240
>SEN1_MOUSE (P59110) Sentrin-specific protease 1 (EC 3.4.22.-)
(Sentrin/SUMO-specific protease SENP1)
Length = 640
Score = 39.3 bits (90), Expect = 0.022
Identities = 22/96 (22%), Positives = 41/96 (41%), Gaps = 15/96 (15%)
Query: 343 VTFAPYNMGDHWVLLVIYTSEFAIEYFDSFDGEPTDDVHMKNIFDAGLMIYHANSNDVPK 402
+ P ++G HW L V+ +I Y+DS G + +++ + V K
Sbjct: 519 ILLVPIHLGVHWCLAVVDFRRKSITYYDSMGGINNEACR--------ILLQYLKQESVDK 570
Query: 403 KKVKY-------IKWRKMKCPKQKNLTDCGYYVLKY 431
K+ ++ + + P+Q N +DCG + KY
Sbjct: 571 KRKEFDTNGWQLFSKKSQEIPQQMNGSDCGMFACKY 606
>H14_HUMAN (P10412) Histone H1.4 (Histone H1b)
Length = 218
Score = 39.3 bits (90), Expect = 0.022
Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 147 KATSRAKGITAVQAKKPAGQVKKP--AERANKPVAQGEKVHEQAKK-QVDKGKKDVGQGK 203
+A +AK A +AKKPAG KKP A A P +K ++AKK G K K
Sbjct: 114 EAKPKAKKAGAAKAKKPAGAAKKPKKATGAATPKKSAKKTPKKAKKPAAAAGAKKAKSPK 173
Query: 204 RA----PGQAKKQADKGTEIQPLGASSK 227
+A P +A K K ++P A K
Sbjct: 174 KAKAAKPKKAPKSPAKAKAVKPKAAKPK 201
>ULP1_SCHPO (O42957) Ubiquitin-like-specific protease 1 (EC
3.4.22.-)
Length = 568
Score = 38.5 bits (88), Expect = 0.037
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 13/89 (14%)
Query: 345 FAPYNMGDHWVLLVIYTSEFAIEYFDSFDGEPTDDVHMKNIFDAGLMIYHANSNDVPKKK 404
F P ++ HW + VI S+ EY+DS G P +FD Y A + K
Sbjct: 455 FIPVHLDVHWCMAVINKSKKRFEYWDSLAGSP------GKVFDLLRDYYIAET----KGA 504
Query: 405 VKYIKWRKM---KCPKQKNLTDCGYYVLK 430
V W P+Q+N DCG + K
Sbjct: 505 VDVSDWENFMDDNSPRQRNGHDCGVFACK 533
>H1_LYTPI (P06144) Late histone H1
Length = 210
Score = 38.1 bits (87), Expect = 0.048
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 148 ATSRAKGITAVQAKKPAGQVKKPAER-ANKPVAQGEKVHEQAKKQVDKGKKDVGQGKRAP 206
A +A A + KKPA + KKPA++ A KP A+ AKK K K K+A
Sbjct: 134 AAKKAAKKAAKKVKKPAAKAKKPAKKAAKKPAAKKAAKKPAAKKPAKKAAKKPA-AKKAA 192
Query: 207 GQAKKQADK 215
AKK A K
Sbjct: 193 KPAKKAAKK 201
Score = 33.5 bits (75), Expect = 1.2
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 147 KATSRAKGITAVQA-KKPAGQVKKPAERANKPVAQGEKVHEQAKKQVDKGKKDVGQGKRA 205
K +R + + A +A KK A +VKKPA +A KP + K K K K K A
Sbjct: 125 KTKARKEKLAAKKAAKKAAKKVKKPAAKAKKPAKKAAK-----KPAAKKAAKKPAAKKPA 179
Query: 206 PGQAKKQADK 215
AKK A K
Sbjct: 180 KKAAKKPAAK 189
>H15_HUMAN (P16401) Histone H1.5 (Histone H1a)
Length = 225
Score = 38.1 bits (87), Expect = 0.048
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 147 KATSRAKGITAVQAKKPAGQVKKPAERANKPVAQGEKVHEQAKKQVDKGKKDVGQGKR-- 204
+A +AK A +AKKPAG K A++A +K ++AKK G K V + +
Sbjct: 117 EAKPKAKKAGAAKAKKPAGATPKKAKKAAGAKKAVKKTPKKAKKPAAAGVKKVAKSPKKA 176
Query: 205 ----APGQAKKQADKGTEIQPLGASSK 227
P +A K K ++P A K
Sbjct: 177 KAAAKPKKATKSPAKPKAVKPKAAKPK 203
Score = 35.4 bits (80), Expect = 0.31
Identities = 32/109 (29%), Positives = 41/109 (37%), Gaps = 6/109 (5%)
Query: 122 AIGTFVAWPKRLVSTMTPASSDNNHKATSRAKGITAVQAKKPAG---QVKKPAERANKPV 178
A G+F K P + + G T +AKK AG VKK ++A KP
Sbjct: 103 ASGSFKLNKKAASGEAKPKAKKAGAAKAKKPAGATPKKAKKAAGAKKAVKKTPKKAKKPA 162
Query: 179 AQGEKVHEQAKKQVDKGKKDVGQGKRAPGQAKKQADKGTEIQPLGASSK 227
A G K + K K K K AK +A K +P A K
Sbjct: 163 AAGVK---KVAKSPKKAKAAAKPKKATKSPAKPKAVKPKAAKPKAAKPK 208
>YNH2_SCHPO (O13612) Putative thiol protease C32H8.02c (EC 3.4.22.-)
Length = 415
Score = 37.4 bits (85), Expect = 0.082
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 13/83 (15%)
Query: 351 GDHWVLLVIYTSEFAIEYFDSFDGEPTDDVHMKNIFDAGLMIYHANSNDVPKKKVKYIKW 410
G HW LLV+ + Y+DS T+D ++ I + G+++ K +
Sbjct: 169 GSHWSLLVVSVEKGLGWYYDSMSNGNTNDCNLA-IKNLGILL------------KKEFRV 215
Query: 411 RKMKCPKQKNLTDCGYYVLKYMR 433
R MK P+Q N DCG +V + R
Sbjct: 216 RHMKTPQQINDCDCGLHVCENTR 238
>SEN5_MACFA (Q8WP32) Sentrin-specific protease 5 (EC 3.4.22.-)
(Sentrin/SUMO-specific protease SENP5) (QtsA-16408)
Length = 755
Score = 37.4 bits (85), Expect = 0.082
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 12/113 (10%)
Query: 347 PYNMGDHWVLLVIYTSEFAIEYFDSFDGEPTDDVHMKNIFDAGLMIYHANSNDVPKKKVK 406
P ++ HW L+ + S I ++DS +H K F + + + K + +
Sbjct: 640 PIHLEVHWSLITVTLSNRIISFYDS------QGIHFK--FCVENIRKYLLTEAREKNRPE 691
Query: 407 YIK-WRKM--KC-PKQKNLTDCGYYVLKYMRDIIIAGDSQTLQEVVILVIKYI 455
+++ W+ KC P+QKN +DCG +VL+Y + + + Q QE + V K I
Sbjct: 692 FLQGWQTAVTKCIPQQKNDSDCGVFVLQYCKCLALEQPFQFSQEDMPRVRKRI 744
>SEN5_HUMAN (Q96HI0) Sentrin-specific protease 5 (EC 3.4.22.-)
(Sentrin/SUMO-specific protease SENP5) (Protease FKSG45)
Length = 755
Score = 37.4 bits (85), Expect = 0.082
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 12/113 (10%)
Query: 347 PYNMGDHWVLLVIYTSEFAIEYFDSFDGEPTDDVHMKNIFDAGLMIYHANSNDVPKKKVK 406
P ++ HW L+ + S I ++DS +H K F + + + K + +
Sbjct: 640 PIHLEVHWSLITVTLSNRIISFYDS------QGIHFK--FCVENIRKYLLTEAREKNRPE 691
Query: 407 YIK-WRKM--KC-PKQKNLTDCGYYVLKYMRDIIIAGDSQTLQEVVILVIKYI 455
+++ W+ KC P+QKN +DCG +VL+Y + + + Q QE + V K I
Sbjct: 692 FLQGWQTAVTKCIPQQKNDSDCGVFVLQYCKCLALEQPFQFSQEDMPRVRKRI 744
>H1A_XENLA (P06892) Histone H1A
Length = 209
Score = 37.0 bits (84), Expect = 0.11
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 147 KATSRAKGITAVQAKKPAGQVKKPAERANKP--VAQGEKVHEQAKKQVDKGKKDVGQGKR 204
KA ++ K A +AKKPA KK A+ KP V+ K ++ KK K +
Sbjct: 120 KAAAKKKAPLAAEAKKPAAAAKKTAKSPKKPKKVSAAAKSPKKLKKPAKAAKSPAKKTAV 179
Query: 205 APGQAKKQADKGTEIQPLGASSK 227
P A K K +P A +K
Sbjct: 180 KPKVAAKSPAKAKAAKPKVAKAK 202
>H13_MOUSE (P43277) Histone H1.3 (H1 VAR.4) (H1d)
Length = 220
Score = 37.0 bits (84), Expect = 0.11
Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Query: 147 KATSRAKGITAVQAKKPAGQVKKP--AERANKPVAQGEKVHEQAK--------KQVDKGK 196
+A +AK A +AKKPAG KKP A A P +K ++AK K+V K
Sbjct: 115 EAKPKAKKAGAAKAKKPAGAAKKPKKATGAATPKKTAKKTPKKAKKPAAAAGAKKVSKSP 174
Query: 197 KDVGQG---KRAPGQAKKQADKGTEIQPLGASSK 227
K V K A AK +A K +P + K
Sbjct: 175 KKVKAAKPKKAAKSPAKAKAPKAKASKPKASKPK 208
>RS6_AEDAE (Q9U761) 40S ribosomal protein S6
Length = 346
Score = 36.6 bits (83), Expect = 0.14
Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 12/103 (11%)
Query: 144 NNHKATSRAKGITAVQAKKPAGQVKKPAERANKPVAQGEKVHE--QAKKQVDKGKKDVG- 200
+ K + AK V K+ +VKK E A K A+ + E +A+K+ + GKK G
Sbjct: 244 DEEKEKAAAKAAKKVAKKEAKKEVKKVTEAAKKADAKAKTKAEPKKAEKKSETGKKTAGD 303
Query: 201 ------QGKRAPGQAKKQADKGTEIQPLG---ASSKDKLQNCK 234
+ K AP AKK+A K G A+ K+K Q K
Sbjct: 304 KKEKKVEKKAAPAVAKKEAPKRKPEAAKGDASAAKKEKNQKKK 346
>H11R_CHICK (P08288) Histone H1.11R
Length = 218
Score = 36.6 bits (83), Expect = 0.14
Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
Query: 130 PKRLVSTMTPASSDNNHKATSRAKGITAVQAKKPAGQVKKPAERANKPVAQGEKVHEQAK 189
PK+ S P K + K A + K A VKK ++A KP A K ++
Sbjct: 120 PKKKASAAKP-------KKAAAKKPAAAAKKPKKAVAVKKSPKKAKKPAASATKKSVKSP 172
Query: 190 KQVDKGKKDVGQGKRAPGQA-KKQADKGTEIQPLGASSK 227
K+ K KK V A +A K +A K +P A +K
Sbjct: 173 KKAAKPKKAVAAKSPAKAKAVKPKAAKPKAAKPKAAKAK 211
>IF2P_YEAST (P39730) Eukaryotic translation initiation factor 5B
(eIF-5B) (Translation initiation factor IF-2)
Length = 1002
Score = 36.2 bits (82), Expect = 0.18
Identities = 29/108 (26%), Positives = 54/108 (49%), Gaps = 14/108 (12%)
Query: 136 TMTPASS----DNNHKATSRAKGITAV---------QAKKPAGQVKKPAERANKPVAQGE 182
T P SS D + +A++ A+G A+ Q+KK + ++ KP+ + +
Sbjct: 32 TPNPESSAGADDTSREASASAEGAEAIEGDFMSTLKQSKKKQEKKVIEEKKDGKPILKSK 91
Query: 183 KVHEQAKKQVDK-GKKDVGQGKRAPGQAKKQADKGTEIQPLGASSKDK 229
K E+ KK+ +K KK+ K+A QA+K+ +K Q + ++ +K
Sbjct: 92 KEKEKEKKEKEKQKKKEQAARKKAQQQAQKEKNKELNKQNVEKAAAEK 139
>H14_MOUSE (P43274) Histone H1.4 (H1 VAR.2) (H1e)
Length = 218
Score = 36.2 bits (82), Expect = 0.18
Identities = 26/72 (36%), Positives = 36/72 (49%), Gaps = 3/72 (4%)
Query: 147 KATSRAKGITAVQAKKPAGQVKKPAERANKPVAQ--GEKVHEQAKK-QVDKGKKDVGQGK 203
+A +AK A +AKKPAG KKP + A A+ +K ++AKK G K K
Sbjct: 114 EAKPKAKRAGAAKAKKPAGAAKKPKKAAGTATAKKSTKKTPKKAKKPAAAAGAKKAKSPK 173
Query: 204 RAPGQAKKQADK 215
+A K+A K
Sbjct: 174 KAKATKAKKAPK 185
>H15_MOUSE (P43276) Histone H1.5 (H1 VAR.5) (H1b)
Length = 222
Score = 35.4 bits (80), Expect = 0.31
Identities = 25/82 (30%), Positives = 38/82 (45%), Gaps = 1/82 (1%)
Query: 147 KATSRAKGITAVQAKKPAGQVKKPAERANKPVAQGEKVHEQAKKQVDKGKKDVGQG-KRA 205
+A +AK A +AKKPAG K ++ +K ++AKK G K V + K+A
Sbjct: 114 EAKPKAKKTGAAKAKKPAGATPKKPKKTAGAKKTVKKTPKKAKKPAAAGVKKVAKSPKKA 173
Query: 206 PGQAKKQADKGTEIQPLGASSK 227
AK + + +P SK
Sbjct: 174 KAAAKPKKAAKSPAKPKAVKSK 195
>CYL2_HUMAN (Q14093) Cylicin II (Multiple-band polypeptide II)
Length = 348
Score = 35.4 bits (80), Expect = 0.31
Identities = 26/84 (30%), Positives = 37/84 (43%), Gaps = 7/84 (8%)
Query: 158 VQAKKPAGQVKKPAERANKPVAQGEKVHEQAKKQVDKGKKDVGQGKRA-------PGQAK 210
+ AKK + + KK AE+ + E AKK K KKD +GK + G +
Sbjct: 155 LDAKKDSKKGKKDAEKGKDSATESEDEKGGAKKDNKKDKKDSNKGKDSATESEGEKGGTE 214
Query: 211 KQADKGTEIQPLGASSKDKLQNCK 234
K + KG + G S +LQ K
Sbjct: 215 KDSKKGKKDSKKGKDSAIELQAVK 238
Score = 32.7 bits (73), Expect = 2.0
Identities = 28/82 (34%), Positives = 37/82 (44%), Gaps = 10/82 (12%)
Query: 153 KGITAVQAKKPAGQVKKPAERANKPVAQGEKVHEQAKKQVDKGKKDVGQGKRAPGQAKKQ 212
KG + AKK A ++KK + KP + + KK+ KKD A AKK
Sbjct: 253 KGDESKDAKKDAKEIKKGKKDKKKPSSTDSDSKDDVKKE---SKKD------ATKDAKKV 303
Query: 213 ADKGTEIQPLGASSKDKLQNCK 234
A K TE + S KD +N K
Sbjct: 304 AKKDTE-KESADSKKDAKKNAK 324
Score = 31.2 bits (69), Expect = 5.9
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 153 KGITAVQAKKPAGQVKKPAE--RANKPVAQGEKVHEQAKKQVDKGKKDVGQGKRAPGQAK 210
K V+ A ++ K E K E +Q KK KGK D+ +GK AK
Sbjct: 100 KPTRTVEVDSKAAEIGKKGEDKTTQKDTTDSESELKQGKKDSKKGK-DIEKGKEEKLDAK 158
Query: 211 KQADKGTEIQPLGASSKDKLQNCK 234
K + KG + G S + ++ K
Sbjct: 159 KDSKKGKKDAEKGKDSATESEDEK 182
>NFH_HUMAN (P12036) Neurofilament triplet H protein (200 kDa
neurofilament protein) (Neurofilament heavy polypeptide)
(NF-H)
Length = 1026
Score = 35.0 bits (79), Expect = 0.41
Identities = 35/141 (24%), Positives = 58/141 (40%), Gaps = 10/141 (7%)
Query: 134 VSTMTPASSDNNHKATSRAKGITAVQAKKPAGQVKKPAERANKPVAQGEKVHEQAK---- 189
V + A S +A S K + +AK P + K E+A PV K E+AK
Sbjct: 632 VKSPEKAKSPTKEEAKSPEKAKSPEKAKSPEKEEAKSPEKAKSPVKAEAKSPEKAKSPVK 691
Query: 190 ---KQVDKGKKDVGQGKRAPGQAKKQADKGTEIQPLGASS--KDKLQNCKFVWAYARSVL 244
K +K K V + ++P +AK + + P A S K++ + + + +
Sbjct: 692 AEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAK-SPEKAKSPVKEEAKTPEKAKSPVKEEA 750
Query: 245 KSEDLLKIPMPENILNTNTEE 265
KS + K P L+ + E
Sbjct: 751 KSPEKAKSPEKAKTLDVKSPE 771
Score = 30.8 bits (68), Expect = 7.7
Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 2/115 (1%)
Query: 140 ASSDNNHKATSRAKGITAVQAKKPAGQVKKPAERANKPVAQGEKVHEQAKKQVDKGKKDV 199
A S +A S A+ + +AK PA + K A P V E+AK + K V
Sbjct: 564 AKSPEKEEAKSPAEVKSPEKAKSPAKEEAKSPAEAKSPEKAKSPVKEEAKSPAE-AKSPV 622
Query: 200 GQGKRAPGQAKKQADKGTEIQPLGASSKDKLQNCKFVWAYARSVLKSEDLLKIPM 254
+ ++P + K +K A S +K ++ + + + KS + K P+
Sbjct: 623 KEEAKSPAEV-KSPEKAKSPTKEEAKSPEKAKSPEKAKSPEKEEAKSPEKAKSPV 676
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.316 0.133 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,526,240
Number of Sequences: 164201
Number of extensions: 2408605
Number of successful extensions: 7393
Number of sequences better than 10.0: 98
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 7147
Number of HSP's gapped (non-prelim): 245
length of query: 462
length of database: 59,974,054
effective HSP length: 114
effective length of query: 348
effective length of database: 41,255,140
effective search space: 14356788720
effective search space used: 14356788720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0199.3