BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0197.8
         (242 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TBX6_BRARE (P79742) T-box transcription factor TBX6 (T-box prote...    31  2.3
EFG_CHLTE (Q8KAG9) Elongation factor G (EF-G)                          31  2.3
EFG_THICU (O50565) Elongation factor G (EF-G)                          30  4.0
EFG2_VIBVY (Q7MI49) Elongation factor G 2 (EF-G 2)                     30  4.0
EFG2_VIBCH (Q9KPM5) Elongation factor G 2 (EF-G 2)                     30  4.0
PYRG_BUCAI (P57491) CTP synthase (EC 6.3.4.2) (UTP--ammonia liga...    30  5.2
GTFS_STRDO (P29336) Glucosyltransferase-S precursor (EC 2.4.1.5)...    30  5.2
OPCD_BACSU (O34742) Glycine betaine/carnitine/choline transport ...    30  6.8
OPBD_BACSU (P39775) Choline transport system permease protein opuBD    30  6.8
EFG_COXBU (Q83ES7) Elongation factor G (EF-G)                          30  6.8
ANFD_AZOVI (P16266) Nitrogenase iron-iron protein alpha chain (E...    30  6.8
YJ31_YEAST (P40355) Hypothetical 108.4 kDa protein in CBF1-NTA1 ...    29  8.9

>TBX6_BRARE (P79742) T-box transcription factor TBX6 (T-box protein
           6)
          Length = 473

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 15/40 (37%), Positives = 24/40 (59%), Gaps = 1/40 (2%)

Query: 96  GTRLIVVELGERYIGATVITGTNANDKV-HISIMDLVPSD 134
           GT +++ + G R   +  +T T  N KV ++ IMD+VP D
Sbjct: 51  GTEMLITKSGRRMFPSCKVTVTGLNPKVKYVVIMDMVPFD 90


>EFG_CHLTE (Q8KAG9) Elongation factor G (EF-G)
          Length = 704

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 21/68 (30%), Positives = 37/68 (53%), Gaps = 4/68 (5%)

Query: 84  LRNIDQAAGLCNGTRLIVVE---LGERYIGATVITGTNA-NDKVHISIMDLVPSDPNFQL 139
           L+++     LC+ ++ IV+E     E  I   V   T A NDK+ +S+  L   DP F++
Sbjct: 388 LKDVRTGDTLCDESKPIVLEKMVFPEPVIEIAVEPKTKADNDKLGMSLAKLAEEDPTFRV 447

Query: 140 NSEEDSFQ 147
            ++E++ Q
Sbjct: 448 KTDEETGQ 455


>EFG_THICU (O50565) Elongation factor G (EF-G)
          Length = 702

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 80  PIMLLRNIDQAAGLCNGTRLIVVE---LGERYIGATVITGTNAN-DKVHISIMDLVPSDP 135
           P + LR I     LC+   +I +E     E  I   V   T A+ +K+ I++  +   DP
Sbjct: 380 PAIGLREITTGETLCDPESIITLEKMVFPEPVISQAVEPKTKADQEKMGIALQRVAQEDP 439

Query: 136 NFQLNSEEDSFQ 147
           +F++ ++E+S Q
Sbjct: 440 SFRVKTDEESGQ 451


>EFG2_VIBVY (Q7MI49) Elongation factor G 2 (EF-G 2)
          Length = 695

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 12/28 (42%), Positives = 21/28 (74%)

Query: 118 NANDKVHISIMDLVPSDPNFQLNSEEDS 145
           N ++K+ I+I  +V  DP+FQ+ ++EDS
Sbjct: 416 NGSEKMGIAIGKMVAEDPSFQVETDEDS 443


>EFG2_VIBCH (Q9KPM5) Elongation factor G 2 (EF-G 2)
          Length = 695

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 12/28 (42%), Positives = 21/28 (74%)

Query: 118 NANDKVHISIMDLVPSDPNFQLNSEEDS 145
           N ++K+ I+I  +V  DP+FQ+ ++EDS
Sbjct: 416 NGSEKMGIAIGKMVAEDPSFQVETDEDS 443


>PYRG_BUCAI (P57491) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase)
           (CTP synthetase)
          Length = 545

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 11/45 (24%), Positives = 23/45 (50%)

Query: 92  GLCNGTRLIVVELGERYIGATVITGTNANDKVHISIMDLVPSDPN 136
           G+C G ++ ++E  +  +G      T  + +    I+DL+ + PN
Sbjct: 377 GICLGMQIAIIEFAQNVVGIKEANSTEFDPQCKYPIIDLIKNRPN 421


>GTFS_STRDO (P29336) Glucosyltransferase-S precursor (EC 2.4.1.5)
           (GTF-S) (Dextransucrase) (Sucrose 6-glucosyltransferase)
          Length = 1365

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 110 GATVITGTNANDKVHISIMDLVPSDPNFQLNSE 142
           G  V   TN ND   + +  +VPSDP F   ++
Sbjct: 32  GQVVAADTNNNDGTSVQVNKMVPSDPKFDAQAQ 64


>OPCD_BACSU (O34742) Glycine betaine/carnitine/choline transport
           system permease protein opuCD
          Length = 229

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 17/78 (21%), Positives = 40/78 (50%), Gaps = 3/78 (3%)

Query: 59  FLNNTKS*GMSNHKLLLKVDIPI---MLLRNIDQAAGLCNGTRLIVVELGERYIGATVIT 115
           +L + K+ GM+  ++L  V++P+   +++  +  A  +  G   I   +G   +G  ++ 
Sbjct: 114 YLESGKAMGMTKFQVLRMVELPLALSVIMAGLRTALVIAIGITAIGTFVGAGGLGDIIVR 173

Query: 116 GTNANDKVHISIMDLVPS 133
           G+NA +   I +   +P+
Sbjct: 174 GSNATNGTAIILAGAIPT 191


>OPBD_BACSU (P39775) Choline transport system permease protein opuBD
          Length = 226

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 17/78 (21%), Positives = 40/78 (50%), Gaps = 3/78 (3%)

Query: 59  FLNNTKS*GMSNHKLLLKVDIPI---MLLRNIDQAAGLCNGTRLIVVELGERYIGATVIT 115
           +L + K+ GM+  ++L  V++P+   +++  +  A  +  G   I   +G   +G  ++ 
Sbjct: 114 YLESGKAMGMTKFQVLRMVELPLALSVIMAGLRTALVIAIGITAIGTFVGAGGLGDMIVR 173

Query: 116 GTNANDKVHISIMDLVPS 133
           G+NA +   I +   +P+
Sbjct: 174 GSNATNGTAIILAGAIPT 191


>EFG_COXBU (Q83ES7) Elongation factor G (EF-G)
          Length = 699

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 84  LRNIDQAAGLCNGTRLIVVE---LGERYIGATVITGTNAN-DKVHISIMDLVPSDPNFQL 139
           L+ +     +CN   +I +E     E  I   +   T A+ +K+ +++  L   DP+F++
Sbjct: 388 LKTVTTGDTICNQQNIITLEKMDFPEPVISVAIEPKTKADQEKMGVALGKLAQEDPSFRV 447

Query: 140 NSEEDSFQ 147
           +++E+S Q
Sbjct: 448 HTDEESAQ 455


>ANFD_AZOVI (P16266) Nitrogenase iron-iron protein alpha chain (EC
           1.18.6.1) (Nitrogenase component I) (Dinitrogenase 3
           alpha subunit)
          Length = 518

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 6/66 (9%)

Query: 101 VVELGERYIGATVITGTNANDKVHISIMDLVPSDPNFQLN---SEEDSFQLQYALR*P*T 157
           + E G  Y GA  + GT   D +HIS   +  +   +Q     S+ D+FQL+Y      T
Sbjct: 44  ISERGCAYCGAKHVIGTPMKDVIHISHGPVGCTYDTWQTKRYISDNDNFQLKYTYA---T 100

Query: 158 KANDKH 163
              +KH
Sbjct: 101 DVKEKH 106


>YJ31_YEAST (P40355) Hypothetical 108.4 kDa protein in CBF1-NTA1
           intergenic region
          Length = 935

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)

Query: 128 MDLVPSDPNFQLNSEEDSFQLQYALR*P*TKANDKHYLR 166
           ++L PSD  FQ N++E   +L+  LR     ++D HYLR
Sbjct: 367 LELSPSD--FQFNAKERIIELETRLRSEGLPSHDTHYLR 403


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.341    0.150    0.478 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,066,220
Number of Sequences: 164201
Number of extensions: 921722
Number of successful extensions: 2396
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2390
Number of HSP's gapped (non-prelim): 12
length of query: 242
length of database: 59,974,054
effective HSP length: 107
effective length of query: 135
effective length of database: 42,404,547
effective search space: 5724613845
effective search space used: 5724613845
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 64 (29.3 bits)