BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0197.6
(158 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DNAJ_DEIPR (O34136) Chaperone protein dnaJ (40 kDa heat shock ch... 68 7e-12
DNJ2_AQUAE (O66921) Chaperone protein dnaJ-2 65 8e-11
DNAJ_METTH (O27352) Chaperone protein dnaJ 64 1e-10
DNAJ_LISMO (Q9S5A3) Chaperone protein dnaJ 64 1e-10
DNAJ_LISIN (Q92BN9) Chaperone protein dnaJ 64 1e-10
DNAJ_UREPA (Q9PQ82) Chaperone protein dnaJ 64 2e-10
DNAJ_ERYRH (Q05646) Chaperone protein dnaJ 64 2e-10
DJA2_RAT (O35824) DnaJ homolog subfamily A member 2 (RDJ2) 64 2e-10
DJA2_MOUSE (Q9QYJ0) DnaJ homolog subfamily A member 2 (mDj3) 64 2e-10
DJA2_HUMAN (O60884) DnaJ homolog subfamily A member 2 (HIRA inte... 64 2e-10
DNAJ_DEIRA (Q9RUG2) Chaperone protein dnaJ 63 2e-10
CBPA_PSESM (Q87VN8) Curved DNA-binding protein 62 5e-10
DNAJ_THEMA (Q9WZV3) Chaperone protein dnaJ 62 7e-10
DNAJ_BACHD (Q9KD71) Chaperone protein dnaJ 62 7e-10
DNAJ_BRECH (Q9LCQ4) Chaperone protein dnaJ 61 9e-10
DNAJ_BACSU (P17631) Chaperone protein dnaJ 61 9e-10
DNAJ_VIBHA (O87385) Chaperone protein dnaJ 61 1e-09
DNAJ_THETH (Q56237) Chaperone protein dnaJ 61 1e-09
DNAJ_STAAW (P63972) Chaperone protein dnaJ (HSP40) 61 1e-09
DNAJ_STAAN (P63971) Chaperone protein dnaJ (HSP40) 61 1e-09
>DNAJ_DEIPR (O34136) Chaperone protein dnaJ (40 kDa heat shock
chaperone protein) (HSP40)
Length = 307
Score = 68.2 bits (165), Expect = 7e-12
Identities = 32/64 (50%), Positives = 50/64 (78%), Gaps = 2/64 (3%)
Query: 64 YEILGIAAAASDQEIKAAYRRLARVRHPNVAAVDRKDSSADEFMKIHAAYSTLSDPEKRA 123
YE+LG++ +ASD +IK+AYR+LA+ HP+ A D +S+A++F +I AY+ LSDP+KR
Sbjct: 7 YEVLGVSRSASDSDIKSAYRKLAKQYHPDKNAGD--ESAAEKFKEIGEAYAVLSDPQKRQ 64
Query: 124 SYDR 127
+YD+
Sbjct: 65 AYDQ 68
>DNJ2_AQUAE (O66921) Chaperone protein dnaJ-2
Length = 376
Score = 64.7 bits (156), Expect = 8e-11
Identities = 33/70 (47%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 57 ASCSSSLYEILGIAAAASDQEIKAAYRRLARVRHPNVAAVDRKDSSADEFMKIHAAYSTL 116
+S YEILG+ AS +EIK AYRRL R HP++ +K ++F +I+ AY L
Sbjct: 3 SSTKKDYYEILGVPRNASQEEIKKAYRRLVRKYHPDIC---KKPECEEKFKEINEAYQVL 59
Query: 117 SDPEKRASYD 126
SDPEKR YD
Sbjct: 60 SDPEKRKLYD 69
>DNAJ_METTH (O27352) Chaperone protein dnaJ
Length = 376
Score = 64.3 bits (155), Expect = 1e-10
Identities = 36/64 (56%), Positives = 45/64 (70%), Gaps = 3/64 (4%)
Query: 64 YEILGIAAAASDQEIKAAYRRLARVRHPNVAAVDRKDSSADEFMKIHAAYSTLSDPEKRA 123
YEILG+ A +EIK AYRRLAR HP+V+ D D +A++F +I AY+ LSD EKRA
Sbjct: 7 YEILGVDRGADKKEIKKAYRRLARKYHPDVS--DDPD-AAEKFKEISEAYAVLSDDEKRA 63
Query: 124 SYDR 127
YDR
Sbjct: 64 RYDR 67
>DNAJ_LISMO (Q9S5A3) Chaperone protein dnaJ
Length = 377
Score = 64.3 bits (155), Expect = 1e-10
Identities = 33/65 (50%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 64 YEILGIAAAASDQEIKAAYRRLARVRHPNVAAVDRKDSSADE-FMKIHAAYSTLSDPEKR 122
YE+LGI+ +AS EIK AYR+L++ HP++ K++ ADE F +I AY LSDP+KR
Sbjct: 7 YEVLGISKSASADEIKKAYRKLSKQYHPDI----NKEAGADEKFKEISEAYEALSDPQKR 62
Query: 123 ASYDR 127
A YD+
Sbjct: 63 AQYDQ 67
>DNAJ_LISIN (Q92BN9) Chaperone protein dnaJ
Length = 376
Score = 64.3 bits (155), Expect = 1e-10
Identities = 33/65 (50%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 64 YEILGIAAAASDQEIKAAYRRLARVRHPNVAAVDRKDSSADE-FMKIHAAYSTLSDPEKR 122
YE+LGI+ +AS EIK AYR+L++ HP++ K++ ADE F +I AY LSDP+KR
Sbjct: 7 YEVLGISKSASADEIKKAYRKLSKQYHPDI----NKEAGADEKFKEISEAYEALSDPQKR 62
Query: 123 ASYDR 127
A YD+
Sbjct: 63 AQYDQ 67
>DNAJ_UREPA (Q9PQ82) Chaperone protein dnaJ
Length = 375
Score = 63.5 bits (153), Expect = 2e-10
Identities = 37/88 (42%), Positives = 58/88 (65%), Gaps = 10/88 (11%)
Query: 64 YEILGIAAAASDQEIKAAYRRLARVRHPNVAAVDRKDSSADE--FMKIHAAYSTLSDPEK 121
YEILG++ +A+ +EIKAA+R+LA+ HP+ ++ SAD+ F +I+ AY LSD +K
Sbjct: 7 YEILGVSKSATPEEIKAAFRKLAKEHHPD------RNKSADDTLFKEINEAYEVLSDSKK 60
Query: 122 RASYDRSMNRRRRPLTAAVTSRFSGYKG 149
RA YD+ + + ++A S FSG+ G
Sbjct: 61 RAQYDQFGHDGPQGFSSA--SGFSGFSG 86
>DNAJ_ERYRH (Q05646) Chaperone protein dnaJ
Length = 370
Score = 63.5 bits (153), Expect = 2e-10
Identities = 29/64 (45%), Positives = 47/64 (73%), Gaps = 3/64 (4%)
Query: 64 YEILGIAAAASDQEIKAAYRRLARVRHPNVAAVDRKDSSADEFMKIHAAYSTLSDPEKRA 123
YEILG++ +A+D EIK AYR+LA+ HP+ ++++D + +F ++ AY LSD +KRA
Sbjct: 8 YEILGVSKSATDAEIKKAYRQLAKKYHPD---INKEDGAEAKFKEVQEAYEVLSDSQKRA 64
Query: 124 SYDR 127
+YD+
Sbjct: 65 NYDQ 68
>DJA2_RAT (O35824) DnaJ homolog subfamily A member 2 (RDJ2)
Length = 412
Score = 63.5 bits (153), Expect = 2e-10
Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 5/67 (7%)
Query: 61 SSLYEILGIAAAASDQEIKAAYRRLARVRHPNVAAVDRKDSSADEFMKIHAAYSTLSDPE 120
+ LY+ILG+ AS+ E+K AYR+LA+ HP D+ ++ D+F +I AY LS+PE
Sbjct: 7 TKLYDILGVPPGASENELKKAYRKLAKEYHP-----DKNPNAGDKFKEISFAYEVLSNPE 61
Query: 121 KRASYDR 127
KR YDR
Sbjct: 62 KRELYDR 68
>DJA2_MOUSE (Q9QYJ0) DnaJ homolog subfamily A member 2 (mDj3)
Length = 412
Score = 63.5 bits (153), Expect = 2e-10
Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 5/67 (7%)
Query: 61 SSLYEILGIAAAASDQEIKAAYRRLARVRHPNVAAVDRKDSSADEFMKIHAAYSTLSDPE 120
+ LY+ILG+ AS+ E+K AYR+LA+ HP D+ ++ D+F +I AY LS+PE
Sbjct: 7 TKLYDILGVPPGASENELKKAYRKLAKEYHP-----DKNPNAGDKFKEISFAYEVLSNPE 61
Query: 121 KRASYDR 127
KR YDR
Sbjct: 62 KRELYDR 68
>DJA2_HUMAN (O60884) DnaJ homolog subfamily A member 2 (HIRA
interacting protein 4) (Cell cycle progression
restoration gene 3 protein) (Dnj3)
Length = 412
Score = 63.5 bits (153), Expect = 2e-10
Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 5/67 (7%)
Query: 61 SSLYEILGIAAAASDQEIKAAYRRLARVRHPNVAAVDRKDSSADEFMKIHAAYSTLSDPE 120
+ LY+ILG+ AS+ E+K AYR+LA+ HP D+ ++ D+F +I AY LS+PE
Sbjct: 7 TKLYDILGVPPGASENELKKAYRKLAKEYHP-----DKNPNAGDKFKEISFAYEVLSNPE 61
Query: 121 KRASYDR 127
KR YDR
Sbjct: 62 KRELYDR 68
>DNAJ_DEIRA (Q9RUG2) Chaperone protein dnaJ
Length = 376
Score = 63.2 bits (152), Expect = 2e-10
Identities = 31/64 (48%), Positives = 46/64 (71%), Gaps = 3/64 (4%)
Query: 64 YEILGIAAAASDQEIKAAYRRLARVRHPNVAAVDRKDSSADEFMKIHAAYSTLSDPEKRA 123
YE+LG++ AS EIK+AYR+LA HP+ ++++ +A++F ++ AYS LSD EKRA
Sbjct: 4 YELLGVSRTASADEIKSAYRKLALKLHPDR---NKEEGAAEKFAQVSEAYSVLSDTEKRA 60
Query: 124 SYDR 127
YDR
Sbjct: 61 HYDR 64
>CBPA_PSESM (Q87VN8) Curved DNA-binding protein
Length = 314
Score = 62.0 bits (149), Expect = 5e-10
Identities = 34/74 (45%), Positives = 46/74 (61%), Gaps = 5/74 (6%)
Query: 64 YEILGIAAAASDQEIKAAYRRLARVRHPNVAAVDRKDSSADEFMKIHAAYSTLSDPEKRA 123
Y+IL + AA D+ IK AYR+LAR HP+V+ ++ + D+F + AY LS PEKRA
Sbjct: 7 YKILDVEPAADDKAIKTAYRKLARKYHPDVS---KEAGAEDKFKEASEAYEVLSSPEKRA 63
Query: 124 SYD--RSMNRRRRP 135
YD R R+ RP
Sbjct: 64 EYDELRKYGRQGRP 77
>DNAJ_THEMA (Q9WZV3) Chaperone protein dnaJ
Length = 369
Score = 61.6 bits (148), Expect = 7e-10
Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 64 YEILGIAAAASDQEIKAAYRRLARVRHPNVAAVDRKDSSADEFMKIHAAYSTLSDPEKRA 123
YEILG+ A+ +EIK AY+RL + HP+ +RK++ F +I AY LSDP+KRA
Sbjct: 9 YEILGVPRDATQEEIKRAYKRLVKEWHPDRHPENRKEAE-QRFKEIQEAYEVLSDPQKRA 67
Query: 124 SYDR 127
YDR
Sbjct: 68 MYDR 71
>DNAJ_BACHD (Q9KD71) Chaperone protein dnaJ
Length = 370
Score = 61.6 bits (148), Expect = 7e-10
Identities = 29/64 (45%), Positives = 44/64 (68%), Gaps = 3/64 (4%)
Query: 64 YEILGIAAAASDQEIKAAYRRLARVRHPNVAAVDRKDSSADEFMKIHAAYSTLSDPEKRA 123
YE+LG+ AS E+K AYR+LAR HP+ V++ + D+F ++ A+ TLSDP+K+A
Sbjct: 7 YEVLGVDRNASADEVKKAYRKLARKYHPD---VNKAPDAEDKFKEVKEAFDTLSDPQKKA 63
Query: 124 SYDR 127
YD+
Sbjct: 64 HYDQ 67
>DNAJ_BRECH (Q9LCQ4) Chaperone protein dnaJ
Length = 375
Score = 61.2 bits (147), Expect = 9e-10
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 3/64 (4%)
Query: 64 YEILGIAAAASDQEIKAAYRRLARVRHPNVAAVDRKDSSADEFMKIHAAYSTLSDPEKRA 123
YE+LG+ A EIK AYR+LAR HP+ V++ + ++F ++ AY LS+P+KRA
Sbjct: 6 YEVLGVGKGADADEIKKAYRKLARQYHPD---VNKAADAEEKFKEVKEAYDVLSEPQKRA 62
Query: 124 SYDR 127
YDR
Sbjct: 63 QYDR 66
>DNAJ_BACSU (P17631) Chaperone protein dnaJ
Length = 372
Score = 61.2 bits (147), Expect = 9e-10
Identities = 28/64 (43%), Positives = 46/64 (71%), Gaps = 3/64 (4%)
Query: 64 YEILGIAAAASDQEIKAAYRRLARVRHPNVAAVDRKDSSADEFMKIHAAYSTLSDPEKRA 123
YE+LG++ +AS EIK AYR+L++ HP+ ++++ S ++F ++ AY TLSD +KRA
Sbjct: 7 YEVLGVSKSASKDEIKKAYRKLSKKYHPD---INKEAGSDEKFKEVKEAYETLSDDQKRA 63
Query: 124 SYDR 127
YD+
Sbjct: 64 HYDQ 67
>DNAJ_VIBHA (O87385) Chaperone protein dnaJ
Length = 385
Score = 60.8 bits (146), Expect = 1e-09
Identities = 28/64 (43%), Positives = 47/64 (72%), Gaps = 2/64 (3%)
Query: 64 YEILGIAAAASDQEIKAAYRRLARVRHPNVAAVDRKDSSADEFMKIHAAYSTLSDPEKRA 123
YE+LG++ AS+++IK AY+RLA HP+ D +S+AD+F ++ +Y L+DP+K+A
Sbjct: 7 YEVLGVSRDASERDIKKAYKRLAMKYHPDRNQGD--ESAADKFKEVKESYEILTDPQKKA 64
Query: 124 SYDR 127
+YD+
Sbjct: 65 AYDQ 68
>DNAJ_THETH (Q56237) Chaperone protein dnaJ
Length = 280
Score = 60.8 bits (146), Expect = 1e-09
Identities = 34/84 (40%), Positives = 48/84 (56%), Gaps = 3/84 (3%)
Query: 64 YEILGIAAAASDQEIKAAYRRLARVRHPNVAAVDRKDSSADEFMKIHAAYSTLSDPEKRA 123
Y ILG+ A+ +EIK AY+RLAR HP+ V++ + ++F +I+ AY+ LSDPEKR
Sbjct: 8 YAILGVPRNATQEEIKRAYKRLARQYHPD---VNKSPEAEEKFKEINEAYAVLSDPEKRR 64
Query: 124 SYDRSMNRRRRPLTAAVTSRFSGY 147
YD P FSG+
Sbjct: 65 IYDTYGTTEAPPPPPPGGYDFSGF 88
>DNAJ_STAAW (P63972) Chaperone protein dnaJ (HSP40)
Length = 379
Score = 60.8 bits (146), Expect = 1e-09
Identities = 33/65 (50%), Positives = 43/65 (65%), Gaps = 5/65 (7%)
Query: 64 YEILGIAAAASDQEIKAAYRRLARVRHPNVAAVDRKDSSADE-FMKIHAAYSTLSDPEKR 122
YE+LGI+ AS EIK AYR+L++ HP++ K+ ADE F +I AY LSD KR
Sbjct: 7 YEVLGISKDASKDEIKKAYRKLSKKYHPDI----NKEEGADEKFKEISEAYEVLSDDNKR 62
Query: 123 ASYDR 127
ASYD+
Sbjct: 63 ASYDQ 67
>DNAJ_STAAN (P63971) Chaperone protein dnaJ (HSP40)
Length = 379
Score = 60.8 bits (146), Expect = 1e-09
Identities = 33/65 (50%), Positives = 43/65 (65%), Gaps = 5/65 (7%)
Query: 64 YEILGIAAAASDQEIKAAYRRLARVRHPNVAAVDRKDSSADE-FMKIHAAYSTLSDPEKR 122
YE+LGI+ AS EIK AYR+L++ HP++ K+ ADE F +I AY LSD KR
Sbjct: 7 YEVLGISKDASKDEIKKAYRKLSKKYHPDI----NKEEGADEKFKEISEAYEVLSDDNKR 62
Query: 123 ASYDR 127
ASYD+
Sbjct: 63 ASYDQ 67
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.316 0.125 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,514,227
Number of Sequences: 164201
Number of extensions: 632176
Number of successful extensions: 2068
Number of sequences better than 10.0: 240
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1672
Number of HSP's gapped (non-prelim): 242
length of query: 158
length of database: 59,974,054
effective HSP length: 101
effective length of query: 57
effective length of database: 43,389,753
effective search space: 2473215921
effective search space used: 2473215921
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0197.6