BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0195b.3
(495 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I 55 3e-07
LPRC_HUMAN (P42704) 130 kDa leucine-rich protein (LRP 130) (GP13... 37 0.090
ACT2_PLAFA (P14883) Actin II 37 0.12
ACT_CRYPV (P26183) Actin 36 0.26
JNK1_ANCCA (Q9U6D2) Stress-activated protein kinase JNK-1 (EC 2.... 35 0.34
RF2_BACFI (P96314) Peptide chain release factor 2 (RF-2) (Fragment) 35 0.58
MY1A_CHICK (P47807) Myosin Ia (Brush border myosin I) (BBM-I) (B... 35 0.58
NEK3_MOUSE (Q9R0A5) Serine/threonine-protein kinase Nek3 (EC 2.7... 33 1.3
ACT_TOXGO (P53476) Actin 33 1.3
JNK_DROME (P92208) Stress-activated protein kinase JNK (EC 2.7.1... 33 2.2
SLP1_SCHPO (P78972) WD-repeat containing protein slp1 32 2.9
JNK1_CAEEL (Q8WQG9) Stress-activated protein kinase jnk-1 (EC 2.... 32 2.9
CLPB_HELPY (P71404) Chaperone clpB 32 4.9
RTN1_RAT (Q64548) Reticulon 1 (Neuroendocrine-specific protein) ... 31 6.4
RF2_BACSU (P28367) Peptide chain release factor 2 (RF-2) 31 6.4
YG3M_YEAST (P48237) Hypothetical 101.4 kDa protein in RPL24B-RSR... 31 8.4
VPS3_YEAST (P23643) Vacuolar protein sorting-associated protein ... 31 8.4
UXAB_ECOLI (P24214) Altronate oxidoreductase (EC 1.1.1.58) (Taga... 31 8.4
NRD1_RAT (Q63503) Orphan nuclear receptor NR1D1 (V-erbA related ... 31 8.4
>YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I
Length = 1261
Score = 55.5 bits (132), Expect = 3e-07
Identities = 63/278 (22%), Positives = 111/278 (39%), Gaps = 30/278 (10%)
Query: 185 DAFRTLLMWLCRYKHVEDAETLF-HSKAREFQLHRDIKTWNVILNGW--------CVLGN 235
+ + TL+ L + K + + +F HSK L+R I T ++ W +L +
Sbjct: 808 EVYPTLISVLSKNKRFDAVQRVFEHSK----HLYRKISTKSLEKANWFMALILDAMILSS 863
Query: 236 AHEAKRVWKDIMASKCR-----PDLFTYATFIKALTKKGKLG---TALKLFRGMWNEGCN 287
+ + ++ + P T+A I T++G TAL +F N
Sbjct: 864 SFARQFKSSNLFCDNMKMLGYIPRASTFAHLINNSTRRGDTDDATTALNIFEETKRH--N 921
Query: 288 CKPDVVICNCIIDALCFKKRVPEALEVFQDMKERGCEPNVATYNSLIKHLCKIRRMEKVY 347
KP V + N ++ L +R E ++FQ+MKE G P TY ++I C+I
Sbjct: 922 VKPSVFLYNAVLSKLGRARRTTECWKLFQEMKESGLLPTSVTYGTVINAACRIGDESLAE 981
Query: 348 ELVEDMERKKGSCMPNAVTYSCLL----NSLKGPEEVPGVLERMERNGCSLSDDIYNLVL 403
+L +ME + + P Y+ ++ ++ E+ R+ S Y L++
Sbjct: 982 KLFAEMENQP-NYQPRVAPYNTMIQFEVQTMFNREKALFYYNRLCATDIEPSSHTYKLLM 1040
Query: 404 RLY--MKWDNQDGLRKTWDEMERNGCGPDRRSYTIMIH 439
Y +K N ++ + MER Y IH
Sbjct: 1041 DAYGTLKPVNVGSVKAVLELMERTDVPILSMHYAAYIH 1078
Score = 38.5 bits (88), Expect = 0.040
Identities = 58/294 (19%), Positives = 115/294 (38%), Gaps = 13/294 (4%)
Query: 105 SKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAAHK 164
+K + P+ + N +L LG+ R E ++F EM L T+ T++
Sbjct: 917 TKRHNVKPSVFLYNAVLSKLGRARRTTECWKLFQEMKESGLLPTSVTYGTVINAACRIGD 976
Query: 165 VEEAISMFYTRE-QFGLDLDLDAFRTLLMWLCRYKHVEDAETLFHSKAREFQLHRDIKTW 223
A +F E Q + + T++ + + + ++++ + T+
Sbjct: 977 ESLAEKLFAEMENQPNYQPRVAPYNTMIQFEVQTMFNREKALFYYNRLCATDIEPSSHTY 1036
Query: 224 NVILNGWCVLG--NAHEAKRVWKDIMASKCRPDL-FTYATFIKAL---TKKGKLGTALKL 277
++++ + L N K V ++M P L YA +I L + T+ +
Sbjct: 1037 KLLMDAYGTLKPVNVGSVKAVL-ELMERTDVPILSMHYAAYIHILGNVVSDVQAATSCYM 1095
Query: 278 FRGMWNEGCNCKPDVVICNCIIDALCFKKRVPEALEVFQDMKERGCEPNVATYNSLIKHL 337
++ + D + I++L R+ E +++ DMK N N+LIK
Sbjct: 1096 NALAKHDAGEIQLDANLFQSQIESLIANDRIVEGIQIVSDMKRYNVSLNAYIVNALIKGF 1155
Query: 338 CKIRRMEKV---YELV--EDMERKKGSCMPNAVTYSCLLNSLKGPEEVPGVLER 386
K+ + K ++L+ E M K+ S N V +N + E+ L+R
Sbjct: 1156 TKVGMISKARYYFDLLECEGMSGKEPSTYENMVRAYLSVNDGRKAMEIVEQLKR 1209
Score = 37.0 bits (84), Expect = 0.12
Identities = 57/257 (22%), Positives = 99/257 (38%), Gaps = 27/257 (10%)
Query: 120 ILDILGKMSRFEELHQVFDEMSH------REGLVNEDTFSTL-----LRRFAAAHKVEEA 168
++ +L K RF+ + +VF+ H + L + F L + + A + + +
Sbjct: 813 LISVLSKNKRFDAVQRVFEHSKHLYRKISTKSLEKANWFMALILDAMILSSSFARQFKSS 872
Query: 169 ISMFYTREQFGLDLDLDAFRTLLMWLCRYKHVEDAETLFH--SKAREFQLHRDIKTWNVI 226
+ G F L+ R +DA T + + + + + +N +
Sbjct: 873 NLFCDNMKMLGYIPRASTFAHLINNSTRRGDTDDATTALNIFEETKRHNVKPSVFLYNAV 932
Query: 227 LNGWCVLGNAHEAKRVWK---DIMASKCRPDLFTYATFIKALTKKGKLGTALKLFRGMWN 283
L+ LG A WK ++ S P TY T I A + G A KLF M N
Sbjct: 933 LS---KLGRARRTTECWKLFQEMKESGLLPTSVTYGTVINAACRIGDESLAEKLFAEMEN 989
Query: 284 EGCNCKPDVVICNCIID---ALCFKKRVPEALEVFQDMKERGCEPNVATYNSLIKHLCKI 340
+ N +P V N +I F + +AL + + EP+ TY L+ +
Sbjct: 990 QP-NYQPRVAPYNTMIQFEVQTMFNRE--KALFYYNRLCATDIEPSSHTYKLLMDAYGTL 1046
Query: 341 R--RMEKVYELVEDMER 355
+ + V ++E MER
Sbjct: 1047 KPVNVGSVKAVLELMER 1063
Score = 32.7 bits (73), Expect = 2.2
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 302 LCFKKRVPEALEVFQDMKERGCEPNVATYNSLIKHLCKIRRMEKVYELVEDMERK 356
L K + + ++V+ DM PNV T+ ++I LC RR + V++ +E + ++
Sbjct: 232 LSSSKNIQKIIKVYVDMLNSFISPNVTTFETVIFALC--RRAKFVHQKIESLSKR 284
>LPRC_HUMAN (P42704) 130 kDa leucine-rich protein (LRP 130) (GP130)
(Leucine-rich PPR-motif containing protein)
Length = 1273
Score = 37.4 bits (85), Expect = 0.090
Identities = 28/154 (18%), Positives = 68/154 (43%), Gaps = 5/154 (3%)
Query: 295 CNCIIDALCFKKRVPEALEVFQDMKERGCEPNVATYNSLIKHLCKIRRMEKVYELVEDME 354
C ++ L ++R A ++ +++ G +V+ YN+L+K + + + ME
Sbjct: 9 CGSLLPELKLEERTEFAHRIWDTLQKLGAVYDVSHYNALLKVYLQNEYKFSPTDFLAKME 68
Query: 355 RKKGSCMPNAVTYSCLLNSLKGPEEVPG---VLERMERNGCSLSDDIYNLVLRLYMKWDN 411
+ + PN VTY L+ S ++ G +L M+ +++ +++ ++ + + +
Sbjct: 69 --EANIQPNRVTYQRLIASYCNVGDIEGASKILGFMKTKDLPVTEAVFSALVTGHARAGD 126
Query: 412 QDGLRKTWDEMERNGCGPDRRSYTIMIHGHYENG 445
+ M G P +Y +++ + E G
Sbjct: 127 MENAENILTVMRDAGIEPGPDTYLALLNAYAEKG 160
Score = 33.5 bits (75), Expect = 1.3
Identities = 29/144 (20%), Positives = 59/144 (40%), Gaps = 5/144 (3%)
Query: 318 MKERGCEPNVATYNSLIKHLCKIRRMEKVYELVEDMERKKGSCMPNAVTYSCLLNS---L 374
M+E +PN TY LI C + +E +++ M+ K +S L+
Sbjct: 67 MEEANIQPNRVTYQRLIASYCNVGDIEGASKILGFMKTK--DLPVTEAVFSALVTGHARA 124
Query: 375 KGPEEVPGVLERMERNGCSLSDDIYNLVLRLYMKWDNQDGLRKTWDEMERNGCGPDRRSY 434
E +L M G D Y +L Y + + D +++T +++E+ R
Sbjct: 125 GDMENAENILTVMRDAGIEPGPDTYLALLNAYAEKGDIDHVKQTLEKVEKFELHLMDRDL 184
Query: 435 TIMIHGHYENGKMKDAMRYFREMT 458
+I + G + + +++++ T
Sbjct: 185 LQIIFSFSKAGYLSMSQKFWKKFT 208
>ACT2_PLAFA (P14883) Actin II
Length = 376
Score = 37.0 bits (84), Expect = 0.12
Identities = 16/56 (28%), Positives = 31/56 (54%)
Query: 369 CLLNSLKGPEEVPGVLERMERNGCSLSDDIYNLVLRLYMKWDNQDGLRKTWDEMER 424
C+ S+ G ++P ++ ME+ C + D+ N L +K+ + G+ WD+ME+
Sbjct: 29 CVFPSIVGRPKMPNIMIGMEQKECYVGDEAQNKRGILTLKYPIEHGIVTNWDDMEK 84
>ACT_CRYPV (P26183) Actin
Length = 376
Score = 35.8 bits (81), Expect = 0.26
Identities = 15/56 (26%), Positives = 32/56 (56%)
Query: 369 CLLNSLKGPEEVPGVLERMERNGCSLSDDIYNLVLRLYMKWDNQDGLRKTWDEMER 424
C+ S+ G ++PGV+ M++ C + D+ + L +K+ + G+ W++ME+
Sbjct: 30 CVFPSIVGRPKMPGVMVGMDQKDCYVGDEAQSKRGILTLKYPIEHGIVTNWEDMEK 85
>JNK1_ANCCA (Q9U6D2) Stress-activated protein kinase JNK-1 (EC
2.7.1.37)
Length = 376
Score = 35.4 bits (80), Expect = 0.34
Identities = 34/136 (25%), Positives = 52/136 (38%), Gaps = 28/136 (20%)
Query: 116 VCNEILDILGKMSRFEELHQVFDEMSHRE---------GLVNEDTFSTLLRRFAAAHKVE 166
VC + K ++L + F ++H + LVN LL F+ +VE
Sbjct: 40 VCAATDMVTNKPVAIKKLSRPFQNVTHAKRAYREFILMNLVNHKNIIGLLNAFSPQREVE 99
Query: 167 EAISMFYTREQFGLDL------DLDAFRT---LLMWLCRYKHVEDAETLFHSKAREFQLH 217
E ++ E +L DLD R L LC KH+ A + H
Sbjct: 100 EFNDLYIVMELMDANLCQVIQMDLDHERLSYLLYQMLCGIKHLHSAGII----------H 149
Query: 218 RDIKTWNVILNGWCVL 233
RD+K N+++ C L
Sbjct: 150 RDLKPSNIVVKSDCTL 165
>RF2_BACFI (P96314) Peptide chain release factor 2 (RF-2) (Fragment)
Length = 294
Score = 34.7 bits (78), Expect = 0.58
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 339 KIRRMEKVYELV-----EDMERKKGSCMPNAVT----YSCLLNSLKGPEEVPGVLERMER 389
K +E YELV E++E++ + + ++ + L + ++ +LE
Sbjct: 75 KYENLEVSYELVKEEADEELEKELEAGVKELISRLNDFELQLLLSEPYDKNNAILELHPG 134
Query: 390 NGCSLSDDIYNLVLRLYMKWDNQDGLR-KTWDEMERNGCGPDRRSYTIMIHGHYENGKMK 448
G + S D +++LR+Y +W Q G + +T D + + G +S T++I GH G +K
Sbjct: 135 AGGTESQDWASMLLRMYTRWSEQRGFKVETMDYLPGDEAGV--KSVTLLIKGHNAYGYLK 192
>MY1A_CHICK (P47807) Myosin Ia (Brush border myosin I) (BBM-I)
(BBMI) (Myosin I heavy chain) (MIHC)
Length = 1045
Score = 34.7 bits (78), Expect = 0.58
Identities = 20/53 (37%), Positives = 26/53 (48%)
Query: 136 VFDEMSHREGLVNEDTFSTLLRRFAAAHKVEEAISMFYTREQFGLDLDLDAFR 188
+ DE R G VNEDTF T L + A+HK E+ + + L L FR
Sbjct: 455 MLDEECLRPGTVNEDTFITKLNQIFASHKRYESKETLNAKHVTDVSLPLRCFR 507
>NEK3_MOUSE (Q9R0A5) Serine/threonine-protein kinase Nek3 (EC
2.7.1.37) (NimA-related protein kinase 3)
Length = 511
Score = 33.5 bits (75), Expect = 1.3
Identities = 45/157 (28%), Positives = 68/157 (42%), Gaps = 30/157 (19%)
Query: 216 LHRDIKTWNVIL--NGWCVLGNAHEAKRVWKDIMASKCRPDLFTYATFIKALTKKGKLGT 273
LHRDIK+ NV L NG LG+ A R+ MA C TY +GT
Sbjct: 122 LHRDIKSKNVFLTHNGKVKLGDFGSA-RLLSSPMAFAC-----TY------------VGT 163
Query: 274 ALKLFRGMW-NEGCNCKPDVVICNCIIDALCFKKRVPEALEVFQDMKERGCEPNVATYNS 332
+ +W N N K D+ CI+ LC K P ++++ + C+ + +
Sbjct: 164 PYYVPPEIWENLPYNNKSDIWSLGCILYELCALKH-PFQANSWKNLILKICQGPIHPLPA 222
Query: 333 LIKHLCKIRRMEKVYELVEDMERKKGSCMPNAVTYSC 369
L + CK++ LV+ M ++ S P+A T C
Sbjct: 223 L--YSCKLQ------GLVKQMLKRNPSHRPSATTLLC 251
>ACT_TOXGO (P53476) Actin
Length = 376
Score = 33.5 bits (75), Expect = 1.3
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 373 SLKGPEEVPGVLERMERNGCSLSDDIYNLVLRLYMKWDNQDGLRKTWDEMER 424
S+ G + PG++ ME C + D+ + L +K+ + G+ WD+ME+
Sbjct: 34 SIVGKPKNPGIMVGMEEKDCYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEK 85
>JNK_DROME (P92208) Stress-activated protein kinase JNK (EC
2.7.1.37) (dJNK) (Basket protein)
Length = 372
Score = 32.7 bits (73), Expect = 2.2
Identities = 27/97 (27%), Positives = 37/97 (37%), Gaps = 19/97 (19%)
Query: 146 LVNEDTFSTLLRRFAAAHKVEEAISMFYTREQFG--------LDLDLDAFRTLL-MWLCR 196
LVN LL F +EE ++ E +DLD D LL LC
Sbjct: 77 LVNHKNIIGLLNAFTPQRNLEEFQDVYLVMELMDANLCQVIQMDLDHDRMSYLLYQMLCG 136
Query: 197 YKHVEDAETLFHSKAREFQLHRDIKTWNVILNGWCVL 233
KH+ A + HRD+K N+++ C L
Sbjct: 137 IKHLHSAGII----------HRDLKPSNIVVKADCTL 163
>SLP1_SCHPO (P78972) WD-repeat containing protein slp1
Length = 488
Score = 32.3 bits (72), Expect = 2.9
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 19 PLNPNPVKSIPPPLFTRRFLHSQPEHAAGAGAFVQNLLKFRRDKPTDQVERALDLCGFDL 78
PL +P P + RF+ S+P A AFV ++ D P D E + CGFDL
Sbjct: 72 PLCGSPRNKSRPASRSDRFIPSRPNTA---NAFVNSISS---DVPFDYSESVAEACGFDL 125
Query: 79 N 79
N
Sbjct: 126 N 126
>JNK1_CAEEL (Q8WQG9) Stress-activated protein kinase jnk-1 (EC
2.7.1.37)
Length = 463
Score = 32.3 bits (72), Expect = 2.9
Identities = 30/136 (22%), Positives = 52/136 (38%), Gaps = 28/136 (20%)
Query: 116 VCNEILDILGKMSRFEELHQVFDEMSHRE---------GLVNEDTFSTLLRRFAAAHKVE 166
VC+ + + ++L + F ++H + LVN +L F K++
Sbjct: 133 VCSAFDTVRNEQVAIKKLSRPFQNVTHAKRAYRELKLMSLVNHKNIIGILNCFTPQKKLD 192
Query: 167 EAISMFYTREQFGLDL------DLDAFRT---LLMWLCRYKHVEDAETLFHSKAREFQLH 217
E ++ E +L DLD R L LC +H+ A + H
Sbjct: 193 EFNDLYIVMELMDANLCQVIQMDLDHERLSYLLYQMLCGIRHLHSAGII----------H 242
Query: 218 RDIKTWNVILNGWCVL 233
RD+K N+++ C L
Sbjct: 243 RDLKPSNIVVRSDCTL 258
>CLPB_HELPY (P71404) Chaperone clpB
Length = 856
Score = 31.6 bits (70), Expect = 4.9
Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Query: 306 KRVPEALEVFQDMKERGCEPNVATYNS--LIKHLCKIR-RMEKVYELVEDMERKKGSCMP 362
KR+ E L+ D+KE + N + K + +++ ME + + E +R
Sbjct: 436 KRMQEILKELSDLKEEKIQLEAQFENEKEVFKEISRLKMEMESLKKEAERFKRNGDYQQA 495
Query: 363 NAVTYSCLLNSLKGPEEVPGVLERMERNGCSLSDDI-YNLVLRLYMKW 409
+ YS + + K EE+ E M++NG L + + N + + +W
Sbjct: 496 GEIEYSKIPENKKKEEELQRKWEAMQQNGALLQNALTENNIAEIVSQW 543
>RTN1_RAT (Q64548) Reticulon 1 (Neuroendocrine-specific protein)
(S-rex)
Length = 777
Score = 31.2 bits (69), Expect = 6.4
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 10 TTRILETLFPLNPNPVKSIPPPLFTRRFLHSQPEHAAGAGAFVQNLLKFRRDKPTDQ 66
++R E P + PV+ P FT L S+PE ++G GA V K ++ KP ++
Sbjct: 501 SSRATEERAPSHQGPVEPDPILSFTPVTLQSRPEPSSGDGAPVPEPPKSQQQKPEEE 557
>RF2_BACSU (P28367) Peptide chain release factor 2 (RF-2)
Length = 366
Score = 31.2 bits (69), Expect = 6.4
Identities = 20/67 (29%), Positives = 36/67 (52%), Gaps = 3/67 (4%)
Query: 383 VLERMERNGCSLSDDIYNLVLRLYMKWDNQDGLR-KTWDEMERNGCGPDRRSYTIMIHGH 441
+LE G + S D +++LR+Y +W + G + +T D + + G +S T++I GH
Sbjct: 128 ILELHPGAGGTESQDWGSMLLRMYTRWGERRGFKVETLDYLPGDEAG--IKSVTLLIKGH 185
Query: 442 YENGKMK 448
G +K
Sbjct: 186 NAYGYLK 192
>YG3M_YEAST (P48237) Hypothetical 101.4 kDa protein in RPL24B-RSR1
intergenic region
Length = 864
Score = 30.8 bits (68), Expect = 8.4
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 253 PDLFTYATFIKALTKKGKLGTALKLFRGMWNEGCNCKPDVVICNCIIDALCFKKR-VPEA 311
P+ T I+ ++K A F M PD+ N ++ +C K+R P+A
Sbjct: 318 PNKQNLTTVIQFYSRKEMTKQAWNTFDTMKFLSTKHFPDICTYNTML-RICEKERNFPKA 376
Query: 312 LEVFQDMKERGCEPNVATYNSLIKHLCKIRRMEKVYELVEDMERKKG 358
L++FQ++++ +P TY + + L V E D R G
Sbjct: 377 LDLFQEIQDHNIKPTTNTYIMMARVLASSSSNAVVSEGKSDSLRLLG 423
>VPS3_YEAST (P23643) Vacuolar protein sorting-associated protein
VPS3
Length = 1011
Score = 30.8 bits (68), Expect = 8.4
Identities = 50/218 (22%), Positives = 79/218 (35%), Gaps = 44/218 (20%)
Query: 190 LLMWLCRYKHVEDAETLFHSKAREFQLHRDIKT------WNVILNGWCVLGNAHEAKRVW 243
L + Y H+ED K +F DI+ W V WC G + +R+
Sbjct: 526 LFLMTLHYDHIEDEVM---KKWCDFSDKVDIRILFYMFGWKVYSEIWCFHGLINIVERLK 582
Query: 244 KDIMASKCRPDLFTYATFIKALTKKGKLGTALKLFRGMWNEGCNCKPDVVICNCIIDALC 303
+ +KC L L KK K G F + ID
Sbjct: 583 SLKLTNKCENILKMLLMMKNELKKKNKTGLLTNDFDDIMK--------------TIDITL 628
Query: 304 FKKRVPEALEVFQDMKERGCEPNVATYNSLIK----HLCKIRRMEKVYELVEDMERKKGS 359
FK R+ + + DM ER +Y+ +I+ H K+ R+E + E+ ++KG
Sbjct: 629 FKLRLEKKETITVDMFER------ESYDEIIREINLHDDKLPRIELLIEIY----KEKGE 678
Query: 360 CMPNAVTYSCLLNSLKGPEEVPGVLERMERNGCSLSDD 397
Y LN L+ + ++ +E N L +D
Sbjct: 679 -------YLKALNLLREAGDYISLVSFIEENLKKLPED 709
>UXAB_ECOLI (P24214) Altronate oxidoreductase (EC 1.1.1.58)
(Tagaturonate reductase) (Tagaturonate dehydrogenase)
Length = 483
Score = 30.8 bits (68), Expect = 8.4
Identities = 14/72 (19%), Positives = 37/72 (50%), Gaps = 6/72 (8%)
Query: 77 DLNDDLVLDVLRRHRSDWKPALVFFNWASKADSYAPTSRVCNEILDILGKMSRFEELHQV 136
D N D + +++ R+ +W F W +A+S+ C+ ++D + +E+ ++
Sbjct: 174 DYNGDALRELVLRYAQEWALPEAFIQWLDQANSF------CSTLVDRIVTGYPRDEVAKL 227
Query: 137 FDEMSHREGLVN 148
+E+ + +G ++
Sbjct: 228 EEELGYHDGFLD 239
>NRD1_RAT (Q63503) Orphan nuclear receptor NR1D1 (V-erbA related
protein EAR-1) (Rev-erbA-alpha)
Length = 508
Score = 30.8 bits (68), Expect = 8.4
Identities = 21/78 (26%), Positives = 39/78 (49%), Gaps = 8/78 (10%)
Query: 103 WASKADSYAPTSRVCNEILDILGKMSRFEELHQVFDEMSHREGLVNEDTFSTLLRRFAAA 162
W + S+ P R E+++ ++ F +L Q D+++ L+ TF L+ RFA+
Sbjct: 330 WEDFSMSFTPAVR---EVVEFAKQIPGFRDLSQ-HDQVT----LLKAGTFEVLMVRFASL 381
Query: 163 HKVEEAISMFYTREQFGL 180
V++ MF +R + L
Sbjct: 382 FNVKDQTVMFLSRTTYSL 399
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.322 0.138 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,704,643
Number of Sequences: 164201
Number of extensions: 2639110
Number of successful extensions: 6947
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 6921
Number of HSP's gapped (non-prelim): 34
length of query: 495
length of database: 59,974,054
effective HSP length: 114
effective length of query: 381
effective length of database: 41,255,140
effective search space: 15718208340
effective search space used: 15718208340
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0195b.3