BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0195a.7
(69 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GDIR_ARATH (Q9SFC6) Rho GDP-dissociation inhibitor 1 (Rho GDI-1)... 114 6e-26
GDIR_HUMAN (P52565) Rho GDP-dissociation inhibitor 1 (Rho GDI 1)... 59 3e-09
GDIR_CAEEL (Q20496) Probable rho GDP-dissociation inhibitor (Rho... 56 1e-08
GDIR_MOUSE (Q99PT1) Rho GDP-dissociation inhibitor 1 (Rho GDI 1)... 56 2e-08
GDIR_BOVIN (P19803) Rho GDP-dissociation inhibitor 1 (Rho GDI 1)... 56 2e-08
GDIS_BOVIN (Q9TU03) Rho GDP-dissociation inhibitor 2 (Rho GDI 2)... 54 1e-07
GDIS_HUMAN (P52566) Rho GDP-dissociation inhibitor 2 (Rho GDI 2)... 53 1e-07
GDIS_MOUSE (Q61599) Rho GDP-dissociation inhibitor 2 (Rho GDI 2)... 52 2e-07
GDIR_YEAST (Q12434) Rho GDP-dissociation inhibitor (Rho GDI) 50 1e-06
GDIT_MOUSE (Q62160) Rho GDP-dissociation inhibitor 3 (Rho GDI 3)... 44 8e-05
GDIT_HUMAN (Q99819) Rho GDP-dissociation inhibitor 3 (Rho GDI 3)... 43 2e-04
GDIR_CAVPO (P80237) Rho GDP-dissociation inhibitor 1 (Rho GDI 1)... 36 0.016
EXO1_BPT4 (P04521) Exonuclease subunit 1 (EC 3.1.11.-) (Protein ... 29 2.0
>GDIR_ARATH (Q9SFC6) Rho GDP-dissociation inhibitor 1 (Rho GDI-1)
(AtRhoGDI1)
Length = 240
Score = 114 bits (284), Expect = 6e-26
Identities = 49/66 (74%), Positives = 60/66 (90%)
Query: 4 VTVDSSKEMIGTFSPQTDPYTHEMPDETTPSGIFARRAYSARSKFVDDDNKCYLEIDYTF 63
V VD +KEM+GTFSPQ +PY H MP+ETTPSG+FAR +YSAR+KF+DDDNKCYLEI+Y+F
Sbjct: 172 VKVDRAKEMLGTFSPQLEPYNHVMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSF 231
Query: 64 DIRKDW 69
DIRK+W
Sbjct: 232 DIRKEW 237
>GDIR_HUMAN (P52565) Rho GDP-dissociation inhibitor 1 (Rho GDI 1)
(Rho-GDI alpha)
Length = 204
Score = 58.5 bits (140), Expect = 3e-09
Identities = 24/66 (36%), Positives = 39/66 (58%)
Query: 4 VTVDSSKEMIGTFSPQTDPYTHEMPDETTPSGIFARRAYSARSKFVDDDNKCYLEIDYTF 63
V +D + M+G++ P+ + Y P E P G+ AR +YS +S+F DDD +L ++
Sbjct: 137 VKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNL 196
Query: 64 DIRKDW 69
I+KDW
Sbjct: 197 TIKKDW 202
>GDIR_CAEEL (Q20496) Probable rho GDP-dissociation inhibitor (Rho
GDI)
Length = 191
Score = 56.2 bits (134), Expect = 1e-08
Identities = 24/65 (36%), Positives = 40/65 (60%)
Query: 4 VTVDSSKEMIGTFSPQTDPYTHEMPDETTPSGIFARRAYSARSKFVDDDNKCYLEIDYTF 63
+TV++ K M+G+++P+ + ++ P+E PSG+ R Y SK DDDN YL+ +T
Sbjct: 127 ITVENEKYMMGSYAPKLEIQEYKSPNEEAPSGMMHRGKYKVYSKITDDDNNVYLDWQWTL 186
Query: 64 DIRKD 68
I K+
Sbjct: 187 HITKE 191
>GDIR_MOUSE (Q99PT1) Rho GDP-dissociation inhibitor 1 (Rho GDI 1)
(Rho-GDI alpha) (GDI-1)
Length = 204
Score = 55.8 bits (133), Expect = 2e-08
Identities = 22/66 (33%), Positives = 39/66 (58%)
Query: 4 VTVDSSKEMIGTFSPQTDPYTHEMPDETTPSGIFARRAYSARSKFVDDDNKCYLEIDYTF 63
V +D + M+G++ P+ + Y P E P G+ AR +Y+ +S+F DDD +L ++
Sbjct: 137 VKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDKTDHLSWEWNL 196
Query: 64 DIRKDW 69
I+K+W
Sbjct: 197 TIKKEW 202
>GDIR_BOVIN (P19803) Rho GDP-dissociation inhibitor 1 (Rho GDI 1)
(Rho-GDI alpha)
Length = 204
Score = 55.8 bits (133), Expect = 2e-08
Identities = 22/66 (33%), Positives = 39/66 (58%)
Query: 4 VTVDSSKEMIGTFSPQTDPYTHEMPDETTPSGIFARRAYSARSKFVDDDNKCYLEIDYTF 63
V +D + M+G++ P+ + Y P E P G+ AR +Y+ +S+F DDD +L ++
Sbjct: 137 VKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNL 196
Query: 64 DIRKDW 69
I+K+W
Sbjct: 197 TIKKEW 202
>GDIS_BOVIN (Q9TU03) Rho GDP-dissociation inhibitor 2 (Rho GDI 2)
(Rho-GDI beta) (Ly-GDI) (D4-GDP-dissociation inhibitor)
(D4-GDI)
Length = 200
Score = 53.5 bits (127), Expect = 1e-07
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 4 VTVDSSKEMIGTFSPQTDPYTHEMPDETTPSGIFARRAYSARSKFVDDDNKCYLEIDYTF 63
V VD + M+G++ P+ + Y P E P G+ AR Y +S F DDD +L ++
Sbjct: 133 VKVDKATFMVGSYGPRPEEYEFLTPIEEAPKGMLARGTYHNKSFFTDDDKHDHLTWEWNL 192
Query: 64 DIRKDW 69
I+KDW
Sbjct: 193 SIKKDW 198
>GDIS_HUMAN (P52566) Rho GDP-dissociation inhibitor 2 (Rho GDI 2)
(Rho-GDI beta) (Ly-GDI)
Length = 201
Score = 53.1 bits (126), Expect = 1e-07
Identities = 23/66 (34%), Positives = 37/66 (55%)
Query: 4 VTVDSSKEMIGTFSPQTDPYTHEMPDETTPSGIFARRAYSARSKFVDDDNKCYLEIDYTF 63
V VD + M+G++ P+ + Y P E P G+ AR Y +S F DDD + +L ++
Sbjct: 134 VKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNL 193
Query: 64 DIRKDW 69
I+K+W
Sbjct: 194 SIKKEW 199
>GDIS_MOUSE (Q61599) Rho GDP-dissociation inhibitor 2 (Rho GDI 2)
(Rho-GDI beta) (D4)
Length = 200
Score = 52.4 bits (124), Expect = 2e-07
Identities = 23/64 (35%), Positives = 36/64 (55%)
Query: 6 VDSSKEMIGTFSPQTDPYTHEMPDETTPSGIFARRAYSARSKFVDDDNKCYLEIDYTFDI 65
VD + M+G++ P+ + Y P E P G+ AR Y +S F DDD + +L ++ I
Sbjct: 135 VDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLTWEWNLAI 194
Query: 66 RKDW 69
+KDW
Sbjct: 195 KKDW 198
>GDIR_YEAST (Q12434) Rho GDP-dissociation inhibitor (Rho GDI)
Length = 202
Score = 50.1 bits (118), Expect = 1e-06
Identities = 25/67 (37%), Positives = 39/67 (57%), Gaps = 3/67 (4%)
Query: 4 VTVDSSKEMIGTFSPQTDP---YTHEMPDETTPSGIFARRAYSARSKFVDDDNKCYLEID 60
+ VD + +G+++P T Y E+P+ PSG AR YSA SKF+DDD +L ++
Sbjct: 135 IAVDKIDDHLGSYAPNTKTKPFYEVELPESEAPSGFLARGNYSAVSKFIDDDKTNHLTLN 194
Query: 61 YTFDIRK 67
+ +I K
Sbjct: 195 WGVEIVK 201
>GDIT_MOUSE (Q62160) Rho GDP-dissociation inhibitor 3 (Rho GDI 3)
(Rho-GDI gamma) (Rho-GDI2)
Length = 225
Score = 43.9 bits (102), Expect = 8e-05
Identities = 21/64 (32%), Positives = 31/64 (47%)
Query: 6 VDSSKEMIGTFSPQTDPYTHEMPDETTPSGIFARRAYSARSKFVDDDNKCYLEIDYTFDI 65
VD + M+G++ P+ Y E P G AR Y RS F DDD +L ++ +
Sbjct: 160 VDKAIFMVGSYGPRAQEYEFVTSVEEAPRGALARGLYVVRSLFTDDDRLNHLSWEWHLHV 219
Query: 66 RKDW 69
+DW
Sbjct: 220 CQDW 223
>GDIT_HUMAN (Q99819) Rho GDP-dissociation inhibitor 3 (Rho GDI 3)
(Rho-GDI gamma)
Length = 225
Score = 42.7 bits (99), Expect = 2e-04
Identities = 21/64 (32%), Positives = 29/64 (44%)
Query: 6 VDSSKEMIGTFSPQTDPYTHEMPDETTPSGIFARRAYSARSKFVDDDNKCYLEIDYTFDI 65
VD + M+G++ P Y P E P G R Y S F DDD +L ++ I
Sbjct: 160 VDKTVYMVGSYGPSAQEYEFVTPVEEAPRGALVRGPYLVVSLFTDDDRTHHLSWEWGLCI 219
Query: 66 RKDW 69
+DW
Sbjct: 220 CQDW 223
>GDIR_CAVPO (P80237) Rho GDP-dissociation inhibitor 1 (Rho GDI 1)
(Rho-GDI alpha) (Fragments)
Length = 111
Score = 36.2 bits (82), Expect = 0.016
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 4 VTVDSSKEMIGTFSPQTDPYTHEMPDETTPSGIFARRAYSARSKFVDDDNKCYLEIDYTF 63
V +D + M+G++ P+ + Y P E P G+ AR F DDD +L +
Sbjct: 56 VKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLAR--------FTDDDKTDHLSGERNL 107
Query: 64 DIRK 67
I+K
Sbjct: 108 TIKK 111
>EXO1_BPT4 (P04521) Exonuclease subunit 1 (EC 3.1.11.-) (Protein
Gp47)
Length = 339
Score = 29.3 bits (64), Expect = 2.0
Identities = 19/71 (26%), Positives = 33/71 (45%), Gaps = 8/71 (11%)
Query: 1 GHFVTVDSSKEM--IGTFSPQTDPYTHEMPDETTPSGIFARRAYSARSKFVDDDNKCYLE 58
GHF T+ + + IGT P+T DE P G + + R++F+ ++ +
Sbjct: 184 GHFHTISEAANVRYIGT------PWTLTAGDENDPRGFWMFDTETERTEFIPNNTTWHRR 237
Query: 59 IDYTFDIRKDW 69
I Y F + D+
Sbjct: 238 IHYPFKGKIDY 248
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.318 0.135 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,945,304
Number of Sequences: 164201
Number of extensions: 314999
Number of successful extensions: 587
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 575
Number of HSP's gapped (non-prelim): 13
length of query: 69
length of database: 59,974,054
effective HSP length: 45
effective length of query: 24
effective length of database: 52,585,009
effective search space: 1262040216
effective search space used: 1262040216
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0195a.7