BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0192.13
(1558 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 139 8e-32
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 130 3e-29
YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B) 80 6e-14
YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein 66 9e-10
YMD9_YEAST (Q03434) Transposon Ty1 protein B 65 1e-09
YMU0_YEAST (Q04670) Transposon Ty1 protein B 64 2e-09
YMT5_YEAST (Q04214) Transposon Ty1 protein B 64 2e-09
YME4_YEAST (Q04711) Transposon Ty1 protein B 64 2e-09
YJZ9_YEAST (P47100) Transposon Ty1 protein B 64 2e-09
YJZ7_YEAST (P47098) Transposon Ty1 protein B 64 2e-09
POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23... 52 2e-05
POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse transcript... 51 2e-05
POL_SRV2 (P51517) Pol polyprotein [Contains: Reverse transcripta... 48 2e-04
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 47 3e-04
POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.2... 47 5e-04
M300_ARATH (P93293) Hypothetical mitochondrial protein AtMg00300... 45 0.001
MYSN_DROME (Q99323) Myosin heavy chain, non-muscle (Zipper prote... 45 0.002
POL_IPHA (P04026) Putative Pol polyprotein [Contains: Integrase ... 43 0.008
YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II 42 0.010
POL_SMRVH (P03364) Pol polyprotein [Contains: Reverse transcript... 42 0.017
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 139 bits (349), Expect = 8e-32
Identities = 131/540 (24%), Positives = 245/540 (45%), Gaps = 55/540 (10%)
Query: 334 EISEEELAESYKLLLNKWEDACEMGKKLDETVKNLKAEKQNLLITNGNLQEEIIM----L 389
+I+ ++ E+ + + A ++ L + + +LK + L+++ ++ +E+I
Sbjct: 74 DITARQILENLDAVYERKSLASQLA--LRKRLLSLKLSSEMSLLSHFHIFDELISELLAA 131
Query: 390 K*KIEGMIKSVRMLNKGTDVFDLILEAGKE-AKGRTGLGYTDNSGTEESKKITNTFIPTA 448
KIE M K +L +D I+ A + ++ L + N ++ KI N T+
Sbjct: 132 GAKIEEMDKISHLLITLPSCYDGIITAIETLSEENLTLAFVKNRLLDQEIKIKNDHNDTS 191
Query: 449 KKTEFTKTNQVIQHNTPQIYRQMPYSYPLSQ-KEI---NSRWR--CHHCGKHGHIRPYCY 502
KK I HN Y+ + +++ K+I NS+++ CHHCG+ GHI+ C+
Sbjct: 192 KKVM-----NAIVHNNNNTYKNNLFKNRVTKPKKIFKGNSKYKVKCHHCGREGHIKKDCF 246
Query: 503 RLYRTPQHWKPTQKNVSMKGRKWQPKNNVTALVAYT--SLRASSKEDR---YFDSGCSRH 557
H+K N + + K Q + + +A+ + +S D DSG S H
Sbjct: 247 -------HYKRILNNKNKENEK-QVQTATSHGIAFMVKEVNNTSVMDNCGFVLDSGASDH 298
Query: 558 MTGVKMY----LEHVKPHSPSFVTFGDGAKGKIKGSGKIVNSDSPRLTDVLLVEGLTANL 613
+ + +E V P + G+ +G ++ N L DVL + NL
Sbjct: 299 LINDESLYTDSVEVVPPLKIAVAKQGEFIYATKRGIVRLRNDHEITLEDVLFCKEAAGNL 358
Query: 614 ISISQLCDLDLNVSFIKVGCRVTDENEEVV----MIGIRSVDNCYMWSPLSKGLITKCLV 669
+S+ +L + +++ F K G ++ VV M+ V N +S +K
Sbjct: 359 MSVKRLQEAGMSIEFDKSGVTISKNGLMVVKNSGMLNNVPVINFQAYSINAK-------- 410
Query: 670 SKEEETKLWHKKLGHLNPKSMKKIITKEAIRGLPKLKIEE--GKVCGECQIGKQTQAPYK 727
+ +LWH++ GH++ + +I K L E ++C C GKQ + P+K
Sbjct: 411 -HKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCEICEPCLNGKQARLPFK 469
Query: 728 KL---THIATSKSLELLHMDLMGPMQKESFGGKRYVFVCVDDFSRFTWVSFIAEKSDTFE 784
+L THI + L ++H D+ GP+ + K Y + VD F+ + I KSD F
Sbjct: 470 QLKDKTHI--KRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFS 527
Query: 785 VFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIKEGIKHEFSAPITTQQNGVVEK 844
+F++ + + +V + D+G+E+ +++ ++C+K+GI + + P T Q NGV E+
Sbjct: 528 MFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSER 587
Score = 33.9 bits (76), Expect = 3.6
Identities = 37/182 (20%), Positives = 69/182 (37%), Gaps = 42/182 (23%)
Query: 109 NLKMKEEETVFEFHMKVRDMANASFALGEPMSEEKLVRKILRSLSKRFDMKVTAIEEAQD 168
+LK+ E ++ ++ + A G + E + +L +L +D +TAIE +
Sbjct: 105 SLKLSSEMSLLSHFHIFDELISELLAAGAKIEEMDKISHLLITLPSCYDGIITAIETLSE 164
Query: 169 IGNIIVDELIGSLQTFEMSLNERSEKKNKSIAFVSNTV-DDDLSEKE*DENLSEAITLLG 227
+N ++AFV N + D ++ K + S+ +
Sbjct: 165 --------------------------ENLTLAFVKNRLLDQEIKIKNDHNDTSKKV---- 194
Query: 228 RKFNKVMRRFDRKYRPNVTNKQSDIIKNSGNALKDKEEDKSIKAK*VQCHECEGYGHIRS 287
N ++ + Y+ N + KN K K+ K V+CH C GHI+
Sbjct: 195 --MNAIVHNNNNTYKNN-------LFKN--RVTKPKKIFKGNSKYKVKCHHCGREGHIKK 243
Query: 288 EC 289
+C
Sbjct: 244 DC 245
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 130 bits (327), Expect = 3e-29
Identities = 129/487 (26%), Positives = 207/487 (42%), Gaps = 36/487 (7%)
Query: 374 NLLITNGNLQEEIIMLK*KIEGMIKSVRMLNKGTDVFDLILEAGKEAKGRTGLGYTDNSG 433
+L + NG L ++ L KIE K++ +LN +D + A G+T
Sbjct: 121 HLNVFNG-LITQLANLGVKIEEEDKAILLLNSLPSSYDNL--ATTILHGKT--------- 168
Query: 434 TEESKKITNTFIPTAK--KTEFTKTNQVIQHNTPQIYRQMPYSYPLSQKEINSRWR---- 487
T E K +T+ + K K + +I + Y++ +Y S S+ R
Sbjct: 169 TIELKDVTSALLLNEKMRKKPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSR 228
Query: 488 ---CHHCGKHGHIRPYCYRLYRTPQHWKPTQKNVSMKGRKWQPKNNVTALVAYTS--LRA 542
C++C + GH + C R + QKN Q +NV + +
Sbjct: 229 VRNCYNCNQPGHFKRDCPNP-RKGKGETSGQKNDDNTAAMVQNNDNVVLFINEEEECMHL 287
Query: 543 SSKEDRYF-DSGCSRHMTGVKMYLEHVKPHSPSFVTFGDGAKGKIKGSGKIVNSDSPRLT 601
S E + D+ S H T V+ V G+ + KI G G I + T
Sbjct: 288 SGPESEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCT 347
Query: 602 ----DVLLVEGLTANLISISQLCDLDLNVSFIKVGCRVTDENEEVVMIGIRSVDNCYMWS 657
DV V L NLIS L F R+T + V+ G+ +
Sbjct: 348 LVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLT-KGSLVIAKGVARGTLYRTNA 406
Query: 658 PLSKGLITKCLVSKEEETKLWHKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKVCGECQ 717
+ +G + E LWHK++GH++ K ++ + K I + K C C
Sbjct: 407 EICQGELNAA--QDEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTV---KPCDYCL 461
Query: 718 IGKQTQAPYKKLTHIATSKSLELLHMDLMGPMQKESFGGKRYVFVCVDDFSRFTWVSFIA 777
GKQ + ++ + + L+L++ D+ GPM+ ES GG +Y +DD SR WV +
Sbjct: 462 FGKQHRVSFQTSSERKLN-ILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILK 520
Query: 778 EKSDTFEVFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIKEGIKHEFSAPITTQ 837
K F+VF++ ++RE G + ++RSD+G E+ + +F EYC GI+HE + P T Q
Sbjct: 521 TKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQ 580
Query: 838 QNGVVEK 844
NGV E+
Sbjct: 581 HNGVAER 587
>YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B)
Length = 1770
Score = 79.7 bits (195), Expect = 6e-14
Identities = 72/316 (22%), Positives = 135/316 (41%), Gaps = 25/316 (7%)
Query: 551 DSGCSRHMTGVKMYLEHVKPHSPSFVTFGDGAKGKIKGSGKI-VNSDSPRLTDV--LLVE 607
DSG S+ + YL H P+S + I G + N + T + L
Sbjct: 457 DSGASQTLVRSAHYLHHATPNSEINIVDAQKQDIPINAIGNLHFNFQNGTKTSIKALHTP 516
Query: 608 GLTANLISISQLCDLDLNVSFIKVGCRVTDENEEVVMIGIRSVDNCYMWSP--LSKGLIT 665
+ +L+S+S+L + ++ F + + ++ V+ I + Y S L I+
Sbjct: 517 NIAYDLLSLSELANQNITACFTR---NTLERSDGTVLAPIVKHGDFYWLSKKYLIPSHIS 573
Query: 666 KCLVSKEEETK--------LWHKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKV----C 713
K ++ ++K L H+ LGH N +S++K + K A+ L + IE C
Sbjct: 574 KLTINNVNKSKSVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQC 633
Query: 714 GECQIGKQTQAPYKKLTHIATSKSLE---LLHMDLMGPMQKESFGGKRYVFVCVDDFSRF 770
+C IGK T+ + K + + +S E LH D+ GP+ Y D+ +RF
Sbjct: 634 PDCLIGKSTKHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRF 693
Query: 771 TWVSFIAEKSD--TFEVFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIKEGIKH 828
WV + ++ + VF + ++ + ++ I+ D G E+ N ++ GI
Sbjct: 694 QWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITA 753
Query: 829 EFSAPITTQQNGVVEK 844
++ ++ +GV E+
Sbjct: 754 CYTTTADSRAHGVAER 769
>YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein
Length = 1803
Score = 65.9 bits (159), Expect = 9e-10
Identities = 82/372 (22%), Positives = 142/372 (38%), Gaps = 35/372 (9%)
Query: 498 RPYCYRLYRTPQHWKPTQKNVSMKGRKWQPKNNVTALVAYTSLRASSKEDRYFDSGCSRH 557
+P Y+++R H P Q N K Q ++N +SK+ D+G +
Sbjct: 372 KPIIYKVHRDNNHLSPVQ-NEQKSWNKTQKRSNKVY---------NSKKLVIIDTGSGVN 421
Query: 558 MTGVKMYLEHVKPHSPSFVTFGDGAKGKI--KGSG--KIVNSDSPRLTDVLLV------E 607
+T K L + + + S FG G + KG G KI N + LL E
Sbjct: 422 ITNDKTLLHNYEDSNRSTRFFGIGKNSSVSVKGYGYIKIKNGHNNTDNKCLLTYYVPEEE 481
Query: 608 GLTANLISISQLCDLDLNVSFIKVGCRVTDENEEVVMIGIRSVDNCYMWSPLSKGLITKC 667
+ +++ + L+ + ++G ++ ++V I N + P I
Sbjct: 482 STIISCYDLAKKTKMVLSRKYTRLGNKIIKIKTKIVNGVIHVKMNELIERPSDDSKINAI 541
Query: 668 LVSKEEETKL---------WHKKLGHLNPKSMKKIITKEAIR-GLPKLKIEEGKVCGECQ 717
+ KL HK++GH + ++ I L +K C C+
Sbjct: 542 KPTSSPGFKLNKRSITLEDAHKRMGHTGIQQIENSIKHNHYEESLDLIKEPNEFWCQTCK 601
Query: 718 IGKQTQAPY---KKLTHIATSKSLELLHMDLMGPMQKESFGGKRYVFVCVDDFSRFTWVS 774
I K T+ + H + MD+ GP+ + KRY+ + VD+ +R+ S
Sbjct: 602 ISKATKRNHYTGSMNNHSTDHEPGSSWCMDIFGPVSSSNADTKRYMLIMVDNNTRYCMTS 661
Query: 775 --FIAEKSDTFEVFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIKEGIKHEFSA 832
F R+ Q ++ + + +I SD G EF N + EY I +GI H ++
Sbjct: 662 THFNKNAETILAQVRKNIQYVETQFDRKVREINSDRGTEFTNDQIEEYFISKGIHHILTS 721
Query: 833 PITTQQNGVVEK 844
NG E+
Sbjct: 722 TQDHAANGRAER 733
>YMD9_YEAST (Q03434) Transposon Ty1 protein B
Length = 1328
Score = 65.5 bits (158), Expect = 1e-09
Identities = 55/261 (21%), Positives = 112/261 (42%), Gaps = 22/261 (8%)
Query: 603 VLLVEGLTANLISISQLCDLDLNVSFIKVGCRVTDENEEVVMIGIRSVDNCYMWS----- 657
VL + +L+S+++L +D+ F K V + ++ V+ I + Y S
Sbjct: 89 VLHTPNIAYDLLSLNELAAVDITACFTK---NVLERSDGTVLAPIVKYGDFYWVSKKYLL 145
Query: 658 PLSKGLITKCLVSKEEETKLW-----HKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKV 712
P + + T V E T+ + H+ L H N ++++ + I + ++
Sbjct: 146 PSNISVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDRSSA 205
Query: 713 ----CGECQIGKQTQAPYKKLTHIATSKSLE---LLHMDLMGPMQKESFGGKRYVFVCVD 765
C +C IGK T+ + K + + S E LH D+ GP+ Y D
Sbjct: 206 IDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTD 265
Query: 766 DFSRFTWVSFIAEKSDT--FEVFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIK 823
+ ++F WV + ++ + +VF + ++ + ++ I+ D G E+ N ++ K
Sbjct: 266 ETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEK 325
Query: 824 EGIKHEFSAPITTQQNGVVEK 844
GI ++ ++ +GV E+
Sbjct: 326 NGITPCYTTTADSRAHGVAER 346
>YMU0_YEAST (Q04670) Transposon Ty1 protein B
Length = 1328
Score = 64.3 bits (155), Expect = 2e-09
Identities = 55/261 (21%), Positives = 112/261 (42%), Gaps = 22/261 (8%)
Query: 603 VLLVEGLTANLISISQLCDLDLNVSFIKVGCRVTDENEEVVMIGIRSVDNCYMWS----- 657
VL + +L+S+++L +D+ F K V + ++ V+ I + Y S
Sbjct: 89 VLHTPNIAYDLLSLNELAAVDITACFTK---NVLERSDGTVLAPIVKYGDFYWVSKKYLL 145
Query: 658 PLSKGLITKCLVSKEEETKLW-----HKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKV 712
P + + T V E T+ + H+ L H N ++++ + I + ++
Sbjct: 146 PSNISVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSA 205
Query: 713 ----CGECQIGKQTQAPYKKLTHIATSKSLE---LLHMDLMGPMQKESFGGKRYVFVCVD 765
C +C IGK T+ + K + + S E LH D+ GP+ Y D
Sbjct: 206 IDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTD 265
Query: 766 DFSRFTWVSFIAEKSDT--FEVFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIK 823
+ ++F WV + ++ + +VF + ++ + ++ I+ D G E+ N ++ K
Sbjct: 266 ETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEK 325
Query: 824 EGIKHEFSAPITTQQNGVVEK 844
GI ++ ++ +GV E+
Sbjct: 326 NGITPCYTTTADSRAHGVAER 346
>YMT5_YEAST (Q04214) Transposon Ty1 protein B
Length = 1328
Score = 64.3 bits (155), Expect = 2e-09
Identities = 55/261 (21%), Positives = 112/261 (42%), Gaps = 22/261 (8%)
Query: 603 VLLVEGLTANLISISQLCDLDLNVSFIKVGCRVTDENEEVVMIGIRSVDNCYMWS----- 657
VL + +L+S+++L +D+ F K V + ++ V+ I + Y S
Sbjct: 89 VLHTPNIAYDLLSLNELAAVDITACFTK---NVLERSDGTVLAPIVKYGDFYWVSKKYLL 145
Query: 658 PLSKGLITKCLVSKEEETKLW-----HKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKV 712
P + + T V E T+ + H+ L H N ++++ + I + ++
Sbjct: 146 PSNISVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSA 205
Query: 713 ----CGECQIGKQTQAPYKKLTHIATSKSLE---LLHMDLMGPMQKESFGGKRYVFVCVD 765
C +C IGK T+ + K + + S E LH D+ GP+ Y D
Sbjct: 206 IDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTD 265
Query: 766 DFSRFTWVSFIAEKSDT--FEVFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIK 823
+ ++F WV + ++ + +VF + ++ + ++ I+ D G E+ N ++ K
Sbjct: 266 ETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEK 325
Query: 824 EGIKHEFSAPITTQQNGVVEK 844
GI ++ ++ +GV E+
Sbjct: 326 NGITPCYTTTADSRAHGVAER 346
>YME4_YEAST (Q04711) Transposon Ty1 protein B
Length = 1328
Score = 64.3 bits (155), Expect = 2e-09
Identities = 55/261 (21%), Positives = 112/261 (42%), Gaps = 22/261 (8%)
Query: 603 VLLVEGLTANLISISQLCDLDLNVSFIKVGCRVTDENEEVVMIGIRSVDNCYMWS----- 657
VL + +L+S+++L +D+ F K V + ++ V+ I + Y S
Sbjct: 89 VLHTPNIAYDLLSLNELAAVDITACFTK---NVLERSDGTVLAPIVKYGDFYWVSKKYLL 145
Query: 658 PLSKGLITKCLVSKEEETKLW-----HKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKV 712
P + + T V E T+ + H+ L H N ++++ + I + ++
Sbjct: 146 PSNISVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSA 205
Query: 713 ----CGECQIGKQTQAPYKKLTHIATSKSLE---LLHMDLMGPMQKESFGGKRYVFVCVD 765
C +C IGK T+ + K + + S E LH D+ GP+ Y D
Sbjct: 206 IDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTD 265
Query: 766 DFSRFTWVSFIAEKSDT--FEVFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIK 823
+ ++F WV + ++ + +VF + ++ + ++ I+ D G E+ N ++ K
Sbjct: 266 ETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEK 325
Query: 824 EGIKHEFSAPITTQQNGVVEK 844
GI ++ ++ +GV E+
Sbjct: 326 NGITPCYTTTADSRAHGVAER 346
>YJZ9_YEAST (P47100) Transposon Ty1 protein B
Length = 1755
Score = 64.3 bits (155), Expect = 2e-09
Identities = 55/261 (21%), Positives = 112/261 (42%), Gaps = 22/261 (8%)
Query: 603 VLLVEGLTANLISISQLCDLDLNVSFIKVGCRVTDENEEVVMIGIRSVDNCYMWS----- 657
VL + +L+S+++L +D+ F K V + ++ V+ I + Y S
Sbjct: 516 VLHTPNIAYDLLSLNELAAVDITACFTK---NVLERSDGTVLAPIVKYGDFYWVSKKYLL 572
Query: 658 PLSKGLITKCLVSKEEETKLW-----HKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKV 712
P + + T V E T+ + H+ L H N ++++ + I + ++
Sbjct: 573 PSNISVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSA 632
Query: 713 ----CGECQIGKQTQAPYKKLTHIATSKSLE---LLHMDLMGPMQKESFGGKRYVFVCVD 765
C +C IGK T+ + K + + S E LH D+ GP+ Y D
Sbjct: 633 IDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTD 692
Query: 766 DFSRFTWVSFIAEKSDT--FEVFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIK 823
+ ++F WV + ++ + +VF + ++ + ++ I+ D G E+ N ++ K
Sbjct: 693 ETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEK 752
Query: 824 EGIKHEFSAPITTQQNGVVEK 844
GI ++ ++ +GV E+
Sbjct: 753 NGITPCYTTTADSRAHGVAER 773
>YJZ7_YEAST (P47098) Transposon Ty1 protein B
Length = 1755
Score = 64.3 bits (155), Expect = 2e-09
Identities = 55/261 (21%), Positives = 112/261 (42%), Gaps = 22/261 (8%)
Query: 603 VLLVEGLTANLISISQLCDLDLNVSFIKVGCRVTDENEEVVMIGIRSVDNCYMWS----- 657
VL + +L+S+++L +D+ F K V + ++ V+ I + Y S
Sbjct: 516 VLHTPNIAYDLLSLNELAAVDITACFTK---NVLERSDGTVLAPIVQYGDFYWVSKRYLL 572
Query: 658 PLSKGLITKCLVSKEEETKLW-----HKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKV 712
P + + T V E T+ + H+ L H N ++++ + I + ++
Sbjct: 573 PSNISVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSA 632
Query: 713 ----CGECQIGKQTQAPYKKLTHIATSKSLE---LLHMDLMGPMQKESFGGKRYVFVCVD 765
C +C IGK T+ + K + + S E LH D+ GP+ Y D
Sbjct: 633 IDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTD 692
Query: 766 DFSRFTWVSFIAEKSDT--FEVFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIK 823
+ ++F WV + ++ + +VF + ++ + ++ I+ D G E+ N ++ K
Sbjct: 693 ETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEK 752
Query: 824 EGIKHEFSAPITTQQNGVVEK 844
GI ++ ++ +GV E+
Sbjct: 753 NGITPCYTTTADSRAHGVAER 773
>POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1161
Score = 51.6 bits (122), Expect = 2e-05
Identities = 42/163 (25%), Positives = 72/163 (43%), Gaps = 9/163 (5%)
Query: 692 KIITKEAIRGLPKLKIEEGKVCGECQIGKQTQAPYKKLTH-IATSKSLELLHMDLMGPMQ 750
K+ +K L K ++ + C +C + T + + K + ++D +GP+
Sbjct: 837 KVSSKYWWPNLRKDVVKSIRQCKQCLVTNATNLTSPPILRPVKPLKPFDKFYIDYIGPLP 896
Query: 751 KESFGGKRYVFVCVDDFSRFTWVSFIAEKSDTFEVFRELSQQLQREKGYGIVKI-RSDHG 809
+ G +V V VD + F W+ S + V + L I K+ SD G
Sbjct: 897 PSN--GYLHVLVVVDSMTGFVWLYPTKAPSTSATV-----KALNMLTSIAIPKVLHSDQG 949
Query: 810 KEFENSKFSEYCIKEGIKHEFSAPITTQQNGVVEKKTGLCKNL 852
F +S F+++ ++GI+ EFS P Q +G VE+K K L
Sbjct: 950 AAFTSSTFADWAKEKGIQLEFSTPYHPQSSGKVERKNSDIKRL 992
>POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)]
Length = 886
Score = 51.2 bits (121), Expect = 2e-05
Identities = 47/155 (30%), Positives = 63/155 (40%), Gaps = 12/155 (7%)
Query: 703 PKLKIEEGKVCGECQIGKQTQAPYKKLTHIAT----SKSLELLHMDLMGPMQKESFGGKR 758
P ++ + K G CQ T A K I K + +D +GP+ G
Sbjct: 637 PNMRKDVVKQLGRCQQCLITNASNKASGPILRPDRPQKPFDKFFIDYIGPLPPSQ--GYL 694
Query: 759 YVFVCVDDFSRFTWVSFIAEKSDTFEVFRELSQQLQREKGYGIVK-IRSDHGKEFENSKF 817
YV V VD + FTW+ S + V + L I K I SD G F +S F
Sbjct: 695 YVLVVVDGMTGFTWLYPTKAPSTSATV-----KSLNVLTSIAIPKVIHSDQGAAFTSSTF 749
Query: 818 SEYCIKEGIKHEFSAPITTQQNGVVEKKTGLCKNL 852
+E+ + GI EFS P Q VE+K K L
Sbjct: 750 AEWAKERGIHLEFSTPYHPQSGSKVERKNSDIKRL 784
>POL_SRV2 (P51517) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)]
Length = 867
Score = 47.8 bits (112), Expect = 2e-04
Identities = 52/200 (26%), Positives = 81/200 (40%), Gaps = 29/200 (14%)
Query: 659 LSKGLITKCLVSKEEETKLWHKKLGHLNPKSMKKI--ITKEAIRGLPKLKIEEGKVCGEC 716
L+ ++ L + E + H L HLN +S++ + IT+E R + K C C
Sbjct: 581 LATKVVATTLTTNLTEAQTAHA-LHHLNAQSLRLMFKITREQARQIVKQ-------CPTC 632
Query: 717 QIGKQTQAPYKKLTHIATS-KSLELLHMDLMGPMQKESFGGKRYVFVCVDDFSRFTWVSF 775
Y + H + K L + M FG +YV V +D FS F
Sbjct: 633 -------VTYLPIPHFGVNPKGLVPNMLWQMDVTHYSEFGKLKYVHVSIDTFS-----GF 680
Query: 776 IAEKSDTFEVFRELSQQLQREKGYGIV----KIRSDHGKEFENSKFSEYCIKEGIKHEFS 831
+ T E + + L + I+ I++D+G + +S F +C K IKH F
Sbjct: 681 LVATLQTGEATKHVIAHLLH--CFSIIGQPIHIKTDNGPGYTSSNFRAFCSKLHIKHTFG 738
Query: 832 APITTQQNGVVEKKTGLCKN 851
P Q G+VE+ KN
Sbjct: 739 IPYNPQGQGIVERAHLSLKN 758
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 47.4 bits (111), Expect = 3e-04
Identities = 40/164 (24%), Positives = 76/164 (45%), Gaps = 6/164 (3%)
Query: 683 GHLNPKSMKKIITKEAIRGLPKLKIEEG-KVCGECQIGKQTQAPYKKLTHIATSKSLELL 741
GH K M +++ ++ ++ +E + C +C LT + LE++
Sbjct: 1479 GHFGIKKMWRMVHRKFYWPQMRVCVENCVRTCAKCLCANDHSKLTSSLTPYRMTFPLEIV 1538
Query: 742 HMDLMGPMQKESFGGKRYVFVCVDDFSRF-TWVSFIAEKSDTFEVFRELSQQLQREKGYG 800
DLM S G RY+ +D F+++ T V +K++T V + ++ +G
Sbjct: 1539 ACDLMDVGL--SVQGNRYILTIIDLFTKYGTAVPIPDKKAET--VLKAFVERWAIGEGRI 1594
Query: 801 IVKIRSDHGKEFENSKFSEYCIKEGIKHEFSAPITTQQNGVVEK 844
+K+ +D GKEF N F+++ I+H + ++ NG VE+
Sbjct: 1595 PLKLLTDQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANGAVER 1638
>POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1157
Score = 46.6 bits (109), Expect = 5e-04
Identities = 34/118 (28%), Positives = 54/118 (44%), Gaps = 8/118 (6%)
Query: 736 KSLELLHMDLMGPMQKESFGGKRYVFVCVDDFSRFTWVSFIAEKSDTFEVFRELSQQLQR 795
K + +D +GP+ + G +V V VD + F W+ S + V + L
Sbjct: 884 KPFDKFFIDYIGPLPPSN--GYLHVLVVVDSMTGFVWLYPTKAPSTSATV-----KALNM 936
Query: 796 EKGYGIVK-IRSDHGKEFENSKFSEYCIKEGIKHEFSAPITTQQNGVVEKKTGLCKNL 852
+ K I SD G F ++ F+++ +GI+ EFS P Q +G VE+K K L
Sbjct: 937 LTSIAVPKVIHSDQGAAFTSATFADWAKNKGIQLEFSTPYHPQSSGKVERKNSDIKRL 994
>M300_ARATH (P93293) Hypothetical mitochondrial protein AtMg00300
(ORF145a) (ORF1451)
Length = 145
Score = 45.4 bits (106), Expect = 0.001
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 672 EEETKLWHKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKVCGECQIGKQTQAPYKKLTH 731
++ET+LWH +L H++ + M+ ++ K L K+ K C +C GK + + H
Sbjct: 66 KDETRLWHSRLAHMSQRGMELLVKKGF---LDSSKVSSLKFCEDCIYGKTHRVNFSTGQH 122
Query: 732 IATSKSLELLHMDLMG 747
T L+ +H DL G
Sbjct: 123 -TTKNPLDYVHSDLWG 137
>MYSN_DROME (Q99323) Myosin heavy chain, non-muscle (Zipper protein)
(Myosin II) (Non-muscle MHC)
Length = 2057
Score = 44.7 bits (104), Expect = 0.002
Identities = 84/363 (23%), Positives = 147/363 (40%), Gaps = 74/363 (20%)
Query: 112 MKEEETVFEFHMKVRD---------MANASFALGEPMSEEKLVRKILRSLSKRFDMKVTA 162
+KE ET E H KV++ A AL + E K ++ L++LSK D KV A
Sbjct: 1710 LKEIETTMEMHNKVKEDALKHAKKLQAQVKDALRDA-EEAKAAKEELQALSKEADGKVKA 1768
Query: 163 IEEAQDIGNIIVDELIGSLQTFEMSLNERSE-------KKNKSIAFVSN---------TV 206
+ EA+ + + ++L S + + ER E NK + T+
Sbjct: 1769 L-EAEVLQ--LTEDLASSERARRAAETERDELAEEIANNANKGSLMIDEKRRLEARIATL 1825
Query: 207 DDDLSEKE*DENLSEAITLLGRKFNKVMRRFDRKYRPNVTNKQSDIIKNSGNALKDKEED 266
+++L E +++ SE + RK + + + + N++S+ KN + ++
Sbjct: 1826 EEELEE---EQSNSEVLLDRSRKAQLQIEQLTTE----LANEKSNSQKNENGRALLERQN 1878
Query: 267 KSIKAK*VQCHECEGYGHIRSECATFLKKQGKGMVATWSDDDSEEEEEPQIMG----LTG 322
K +KAK +E T + + K +AT + EE+ + G L
Sbjct: 1879 KELKAK-------------LAEIETAQRTKVKATIATLEAKIANLEEQLENEGKERLLQQ 1925
Query: 323 KCNSEADSSDGEIS-----EEELAESYKLLLNKWEDACEMGKK-LDETVKNLKAEKQNLL 376
K N + D E++ E + +K ++K ++ K+ LDET + L+ EK
Sbjct: 1926 KANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEKTQ-- 1983
Query: 377 ITNGNLQEEIIMLK*KIEGMIKSVRMLNKGTDVFDLILEAGKEAKGRTGLGYTDNSGTEE 436
Q E E MI+S +N+ + L+ G GL + +GT
Sbjct: 1984 --KRKYQRE-------CEDMIESQEAMNREIN----SLKTKLRRTGGIGLSSSRLTGTPS 2030
Query: 437 SKK 439
SK+
Sbjct: 2031 SKR 2033
>POL_IPHA (P04026) Putative Pol polyprotein [Contains: Integrase
(IN); Reverse transcriptase/ribonuclease H (EC 2.7.7.49)
(EC 3.1.26.4) (RT)]
Length = 863
Score = 42.7 bits (99), Expect = 0.008
Identities = 39/184 (21%), Positives = 77/184 (41%), Gaps = 20/184 (10%)
Query: 663 LITKCLVSKEEETKLWHKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGK-VCGECQIGKQ 721
L+ L + + K +HK+ +T E +R L +E + + +CQ
Sbjct: 535 LVATALSTHAQAAKEFHKRFH----------VTAETLRRRFALSRKEAREIVTQCQ---- 580
Query: 722 TQAPYKKLTHIATS-KSLELLHMDLMGPMQKESFGGKRYVFVCVDDFSRFTWVSFIAEKS 780
+ H+ + + + L M M SFG +YV V VD S + + + +
Sbjct: 581 NCCEFLPTPHMGINPRGIRPLQMWQMDVTHIPSFGRLQYVHVSVDTCSGVMFATPLTGEK 640
Query: 781 DTFEVFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIKEGIKHEFSAPITTQQNG 840
++ + L+ +G +I++D+G + + KF ++C + + H P Q G
Sbjct: 641 ASYVI----QHCLEAWSAWGKPRIKTDNGPAYTSQKFRQFCRQMDVTHLTGLPYNPQGQG 696
Query: 841 VVEK 844
+VE+
Sbjct: 697 IVER 700
>YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II
Length = 1268
Score = 42.4 bits (98), Expect = 0.010
Identities = 50/223 (22%), Positives = 83/223 (36%), Gaps = 37/223 (16%)
Query: 656 WSPLSKGLITKCLVSKEEETKLWHKKL----GHLNPKSMKKIITKEAIRGLPKLKIEEGK 711
W P I K + + KL H L + PKS++KI+ K+ G P + + K
Sbjct: 744 WKPKPSTEIEKHWIRYRDRLKLIHGCLLLDDRVIVPKSLQKIVLKQLHEGHPGIVQMKQK 803
Query: 712 V-------------------CGECQIGKQTQAPYKKLTHIATSKSLELLHMDLMGPMQKE 752
C CQ + + +H+D GP+
Sbjct: 804 ARSFVFWRGLDSDIENMVRHCNNCQENSKMPRVVPLNPWPVPEAPWKRIHIDFAGPLNG- 862
Query: 753 SFGGKRYVFVCVDDFSRFTWVSFIAEKSDTFEVFRELSQQLQREKGYGIVKIRSDHGKEF 812
Y+ V VD +++ V S + +L +++ GY I SD+G +
Sbjct: 863 -----CYLLVVVDAKTKYAEVKLTRSISAVTTI--DLLEEIFSIHGYPETII-SDNGTQL 914
Query: 813 ENSKFSEYCIKEGIKHEFSAPITTQQNGVVEK-----KTGLCK 850
+ F++ C GI+H+ SA + NG E+ K G+ K
Sbjct: 915 TSHLFAQMCQSHGIEHKTSAVYYPRSNGAAERFVDTLKRGIAK 957
>POL_SMRVH (P03364) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)]
Length = 888
Score = 41.6 bits (96), Expect = 0.017
Identities = 47/174 (27%), Positives = 72/174 (41%), Gaps = 22/174 (12%)
Query: 682 LGHLNPKSMKKI--ITKEAIRGLPKLKIEEGKVCGECQIGKQTQAPYKKLTHIATSKSLE 739
L HLN +++ + IT+E R + K C +C + T P+ + +
Sbjct: 608 LHHLNAHTLRLLYKITREQARDIVK-------ACKQCVVA--TPVPHLGVNPRGLVPNA- 657
Query: 740 LLHMDLMGPMQKESFGGKRYVFVCVDDFSRFTWVSFIAEKSDTFEVFRE-LSQQLQREKG 798
+ MD+ FG +R+V V VD FS FI T E + +S +
Sbjct: 658 IWQMDVT---HFTPFGKQRFVHVTVDTFS-----GFILATPQTGEASKNVISHVIHCLAT 709
Query: 799 YGIVK-IRSDHGKEFENSKFSEYCIKEGIKHEFSAPITTQQNGVVEKKTGLCKN 851
G I++D+G + F ++C K IKH P Q GVVE+ KN
Sbjct: 710 IGKPHTIKTDNGPGYTGKNFQDFCQKLQIKHVTGIPYNPQGQGVVERAHQTLKN 763
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.339 0.147 0.472
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 156,779,267
Number of Sequences: 164201
Number of extensions: 6104240
Number of successful extensions: 27663
Number of sequences better than 10.0: 129
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 103
Number of HSP's that attempted gapping in prelim test: 27407
Number of HSP's gapped (non-prelim): 329
length of query: 1558
length of database: 59,974,054
effective HSP length: 124
effective length of query: 1434
effective length of database: 39,613,130
effective search space: 56805228420
effective search space used: 56805228420
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 73 (32.7 bits)
Lotus: description of TM0192.13