BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0191.8
(1758 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POL2_MOUSE (P11369) Retrovirus-related Pol polyprotein [Contains... 192 9e-48
LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog 189 6e-47
LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog 181 2e-44
YTX2_XENLA (P14381) Transposon TX1 hypothetical 149 kDa protein ... 161 1e-38
M310_ARATH (P93295) Hypothetical mitochondrial protein AtMg00310... 142 1e-32
POLR_DROME (P16423) Retrovirus-related Pol polyprotein from type... 89 1e-16
MC50_ARATH (P92555) Hypothetical mitochondrial protein AtMg01250... 80 4e-14
PO22_POPJA (Q03274) Retrovirus-related Pol polyprotein from type... 77 3e-13
PO21_NASVI (Q03278) Retrovirus-related Pol polyprotein from type... 74 4e-12
PO21_SCICO (Q03279) Retrovirus-related Pol polyprotein from type... 66 1e-09
YMH5_CAEEL (P34472) Hypothetical protein F58A4.5 in chromosome III 59 2e-07
PO23_POPJA (Q05118) Retrovirus-related Pol polyprotein from type... 59 2e-07
RTJK_DROFU (P21329) RNA-directed DNA polymerase from mobile elem... 57 3e-07
RTJK_DROME (P21328) RNA-directed DNA polymerase from mobile elem... 56 1e-06
YO84_CAEEL (P34620) Hypothetical protein ZK1236.4 in chromosome III 42 0.015
Y2R2_DROME (P16425) Hypothetical 115 kDa protein in type I retro... 40 0.044
ROC2_BOVIN (Q28021) Rho-associated protein kinase 2 (EC 2.7.1.37... 39 0.13
MY5B_RAT (P70569) Myosin Vb (Myosin 5B) (Myosin heavy chain myr 6) 38 0.22
RA50_PYRFU (P58301) DNA double-strand break repair rad50 ATPase 38 0.28
APEA_DICDI (P51173) DNA-(apurinic or apyrimidinic site) lyase (E... 38 0.28
>POL2_MOUSE (P11369) Retrovirus-related Pol polyprotein [Contains:
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1300
Score = 192 bits (487), Expect = 9e-48
Identities = 218/910 (23%), Positives = 379/910 (40%), Gaps = 66/910 (7%)
Query: 400 ISWNCRGVGSPRTVKVLQRIIKAEDPDIVFLMETHKKNGELKNIVARLGFKNHLGVECRG 459
IS N G+ SP L + +DP L ETH + + ++ + G+K + G
Sbjct: 37 ISLNINGLNSPIKRHRLTDWLHKQDPTFCCLQETHLREKD-RHYLRVKGWKTIF--QANG 93
Query: 460 EGRSSGGGLALLWKEDFNIDIISYSLH-HITASHTNADQITCFLTGFYGYPESQNKIKSW 518
+ +G + + K DF +I H Q + Y P ++
Sbjct: 94 LKKQAGVAILISDKIDFQPKVIKKDKEGHFILIKGKILQEELSILNIYA-PNARAATFIR 152
Query: 519 DLLVRLKGETSGPWMCFGDFNEITSNAEK--KGGIDRPIEHMKKFVRCLNQCGLEDMGFQ 576
D LV+LK + + GDFN S+ ++ K ++R K + Q L D+
Sbjct: 153 DTLVKLKAYIAPHTIIVGDFNTPLSSKDRSWKQKLNRDTV---KLTEVMKQMDLTDIYRT 209
Query: 577 GDPFTWCNGRKDEAH-IQERLDR------GVISQSFKEIWPASSVQH-----LLRYNSDH 624
P T H ++D G+ EI P H + N ++
Sbjct: 210 FYPKTKGYTFFSAPHGTFSKIDHIIGHKTGLNRYKNIEIVPCILSDHHGLRLIFNNNINN 269
Query: 625 APLLIT-------VTSQPIEEGKKKKKKLFRFEQHLTLNHELAFHLRQAWQSGGDNAEQK 677
T + ++EG KK+ K F L N A W + K
Sbjct: 270 GKPTFTWKLNNTLLNDTLVKEGIKKEIKDF-----LEFNENEATTYPNLWDTMKAFLRGK 324
Query: 678 LAQAKETIMALETEFGSIRKKLHDLEQRLKAAQKWNPTEENIMRRKE---MENEFAELMG 734
L + ET S L LKA +K RR+E + E ++
Sbjct: 325 LIALSASKKKRETAHTS------SLTTHLKALEKKEANSPKRSRRQEIIKLRGEINQVET 378
Query: 735 REELYWRQRSRATWLKEGDKNTSFFHGKANQRQKQNRIARIRDDHGNWVYKQDQVTTAFS 794
R + ++R+ + ++ +K + + I +IR++ G+ +++
Sbjct: 379 RRTIQRINQTRSWFFEKINKIDKPLARLTKGHRDKILINKIRNEKGDITTDPEEIQNTIR 438
Query: 795 NYFEGIFKSSQPNNIEEVCQKIQN----KLNQEMREHLEEEFTADEVAYALNQMHPLKAP 850
++++ ++ S++ N++E+ + + KLNQ+ +HL + E+ +N + K+P
Sbjct: 439 SFYKRLY-STKLENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKEIEAVINSLPTKKSP 497
Query: 851 GPDGFPALFYQKYWKLVGGDVTSQVLEILNKGVDPASLNQTFICLIPKV-KAPENPMEFR 909
GPDGF A FYQ + + + + +I +G P S + I LIPK K P FR
Sbjct: 498 GPDGFSAEFYQTFKEDLIPILHKLFHKIEVEGTLPNSFYEATITLIPKPQKDPTKIENFR 557
Query: 910 PISLCNVIMKLVTKCIANRIKDVLGEVVGEQQSAFIPGRLITDNALTGFEVFHYMKKKRK 969
PISL N+ K++ K +ANRI++ + ++ Q FIPG N V HY+ K +
Sbjct: 558 PISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHYINKLKD 617
Query: 970 GKKGYMALKLDMSKAYDRIEWDFLKQVLTTMGFPSKITELISICVSSVSYSLLVNGEPSP 1029
K +M + LD KA+D+I+ F+ +VL G +I S ++ VNGE
Sbjct: 618 --KNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNGEKLE 675
Query: 1030 PFSPQRGLRQGDPLSPYLFILCVEAFSGLISNQIRLRNLHGIKVARGAPPINHLFFADDS 1089
+ G RQG PLSPYLF + +E + I Q + + GI++ + I+ L ADD
Sbjct: 676 AIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQ---KEIKGIQIGKEEVKISLL--ADDM 730
Query: 1090 LIFSRATQEEASSLLDVIRQYEQASGQLVNMDKSEISFSRNVPQTSMDTIRNRMGVKAVI 1149
+++ + LL++I + + G +N +KS ++F + + IR V
Sbjct: 731 IVYISDPKNSTRELLNLINSFGEVVGYKINSNKS-MAFLYTKNKQAEKEIRETTPFSIVT 789
Query: 1150 VHDKYLG--LPTVIGHSKKAIFGKIQERVWRKLKGWKEKTLSKAGKEILIK--AVAQAIP 1205
+ KYLG L + F +++ + L+ WK+ S G+ ++K + +AI
Sbjct: 790 NNIKYLGVTLTKEVKDLYDKNFKSLKKEIKEDLRRWKDLPCSWIGRINIVKMAILPKAIY 849
Query: 1206 SYVMSCFKLPNGICSKIESLLANFWWGQKENERKIHWAAWQHLCKTKNRGDLGFRNLEDF 1265
+ K+P +++E + F W K+ A L + G + +L+ +
Sbjct: 850 RFNAIPIKIPTQFFNELEGAICKFVWNNKKPR-----IAKSLLKDKRTSGGITMPDLKLY 904
Query: 1266 NRALLAKQAW 1275
RA++ K AW
Sbjct: 905 YRAIVIKTAW 914
>LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog
Length = 1260
Score = 189 bits (480), Expect = 6e-47
Identities = 144/593 (24%), Positives = 283/593 (47%), Gaps = 28/593 (4%)
Query: 696 RKKLHDLEQRLKAAQKWNPTEENIMRRKEMEN---EFAELMGREELYWRQRSRATWLKEG 752
R+++++L LK +K + RRKE+ E E+ + + +S++ + ++
Sbjct: 310 REEVNNLMGHLKQLEKEEHSNPKPSRRKEITKIRAELNEIENKRIIQQINKSKSWFFEKI 369
Query: 753 DKNTSFFHGKANQRQKQNRIARIRDDHGNWVYKQDQVTTAFSNYFEGIFKSSQPNNIEEV 812
+K +++ ++ I+ IR+ + ++ + Y++ ++ S + N++E+
Sbjct: 370 NKIDKPLANLTRKKRVKSLISSIRNGNDEITTDPSEIQKILNEYYKKLY-SHKYENLKEI 428
Query: 813 CQKIQN----KLNQEMREHLEEEFTADEVAYALNQMHPLKAPGPDGFPALFYQKYWKLVG 868
Q ++ +L+Q+ E L ++ E+A + + K+PGPDGF + FYQ + + +
Sbjct: 429 DQYLEACHLPRLSQKEVEMLNRPISSSEIASTIQNLPKKKSPGPDGFTSEFYQTFKEELV 488
Query: 869 GDVTSQVLEILNKGVDPASLNQTFICLIPKV-KAPENPMEFRPISLCNVIMKLVTKCIAN 927
+ + I +G+ P + + I LIPK K P +RPISL N+ K++ K + N
Sbjct: 489 PILLNLFQNIEKEGILPNTFYEANITLIPKPGKDPTRKENYRPISLMNIDAKILNKILTN 548
Query: 928 RIKDVLGEVVGEQQSAFIPGRLITDNALTGFEVFHYMKKKRKGKKGYMALKLDMSKAYDR 987
RI+ + +++ Q FIPG N V ++ K + K +M L +D KA+D
Sbjct: 549 RIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINVIQHINKLKN--KDHMILSIDAEKAFDN 606
Query: 988 IEWDFLKQVLTTMGFPSKITELISICVSSVSYSLLVNGEPSPPFSPQRGLRQGDPLSPYL 1047
I+ F+ + L +G +LI S + ++++NG F + G RQG PLSP L
Sbjct: 607 IQHPFMIRTLKKIGIEGTFLKLIEAIYSKPTANIILNGVKLKSFPLRSGTRQGCPLSPLL 666
Query: 1048 FILCVEAFSGLISNQIRLRNLHGIKVARGAPPINHLFFADDSLIFSRATQEEASSLLDVI 1107
F + +E + I + ++ +H G+ I FADD +++ T++ + LL+VI
Sbjct: 667 FNIVMEVLAIAIREEKAIKGIH-----IGSEEIKLSLFADDMIVYLENTRDSTTKLLEVI 721
Query: 1108 RQYEQASGQLVNMDKSEISFSRNVPQTSMDTIRNRMGVKAVIVHDKYLG--LPTVIGHSK 1165
++Y SG +N KS ++F + T+++ + V KYLG L +
Sbjct: 722 KEYSNVSGYKINTHKS-VAFIYTNNNQAEKTVKDSIPFTVVPKKMKYLGVYLTKDVKDLY 780
Query: 1166 KAIFGKIQERVWRKLKGWKEKTLSKAGKEILIK--AVAQAIPSYVMSCFKLPNGICSKIE 1223
K + +++ + + WK S G+ ++K + +AI ++ K P +E
Sbjct: 781 KENYETLRKEIAEDVNKWKNIPCSWLGRINIVKMSILPKAIYNFNAIPIKAPLSYFKDLE 840
Query: 1224 SLLANFWWGQKENERKIHWAAWQHLCKTKNR-GDLGFRNLEDFNRALLAKQAW 1275
++ +F W QK+ + + L KN+ G + +L + ++++ K AW
Sbjct: 841 KIILHFIWNQKKPQ------IAKTLLSNKNKAGGITLPDLRLYYKSIVIKTAW 887
>LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog
Length = 1259
Score = 181 bits (459), Expect = 2e-44
Identities = 203/913 (22%), Positives = 397/913 (43%), Gaps = 72/913 (7%)
Query: 400 ISWNCRGVGSPRTVKVLQRIIKAEDPDIVFLMETHKKNGELKNIVARLGFKNHLGVECRG 459
++ N G+ +P L IK++DP + + ETH + + + G++N + G
Sbjct: 10 LTLNVNGLNAPIKRHRLANWIKSQDPSVCCIQETHLTCRDTHRLKIK-GWRNIY--QANG 66
Query: 460 EGRSSGGGLALLWKEDFNIDIISYSL--HHITASHTNADQITCFLTGFYGYPESQNKIKS 517
+ + +G + + K DF I H+I + + L + + IK
Sbjct: 67 KQKKAGVAILVSDKTDFKPTKIKRDKEGHYIMVKGSIQQEELTILNIYAPNTGAPRFIKQ 126
Query: 518 WDLLVRLKGETSGPWMCFGDFNEITSNAEK--KGGIDRPIEHMKKFVRCLNQCGLEDMGF 575
+L L+ + + GDFN S ++ + I++ I+ + L+Q L D+
Sbjct: 127 --VLSDLQRDLDSHTIIMGDFNTPLSTLDRSTRQKINKDIQELNS---ALHQADLIDIYR 181
Query: 576 QGDP----FTWCNGRKDEAHIQERLDRGVISQSFKEIWPASSVQHLLRYNSDHAPLLITV 631
P +T+ + H + D + S++ + + + SDH+ + + +
Sbjct: 182 TLHPKSTEYTFFSAPH---HTYSKTDHILGSKTL--LSKCKRTEIITNCLSDHSAIKLEL 236
Query: 632 TSQPIEEGKKKKKKLFRFEQHLTLN-----HELAFHLRQAWQSGG--DNAEQKL-----A 679
+ + + KL +L LN +E+ +++ +++ D Q L A
Sbjct: 237 RIKKLTQNHSTTWKL----NNLLLNDYWVHNEMKAEIKKFFETNENKDTTYQNLWDTAKA 292
Query: 680 QAKETIMALET-EFGSIRKKLHDLEQRLKAAQKWNPTEENIMRRKEM---ENEFAELMGR 735
+ +AL + R K+ L +LK +K T RR+E+ E E+ +
Sbjct: 293 VCRGKFIALNAHKRKQERSKIDTLISQLKELEKQEQTNSKASRRQEIIKIRAELKEIETQ 352
Query: 736 EELYWRQRSRATWLKEGDKNTSFFHGKANQRQKQNRIARIRDDHGNWVYKQDQVTTAFSN 795
+ L SR+ + ++ +K +++++N+I I++D G+ ++ T
Sbjct: 353 KTLQKINESRSWFFEKINKIDRPLARLIKKKREKNQIDTIKNDRGDITTDPTEIQTTIRE 412
Query: 796 YFEGIFKSSQPNNIEEVCQKIQN----KLNQEMREHLEEEFTADEVAYALNQMHPLKAPG 851
Y++ ++ +++ N+EE+ + + +LNQE E L T+ E+ +N + K+PG
Sbjct: 413 YYKHLY-ANKLENLEEMDKFLDTYTLPRLNQEEVESLNRPITSSEIEAIINSLPNKKSPG 471
Query: 852 PDGFPALFYQKYWKLVGGDVTSQVLEILNKGVDPASLNQTFICLIPKVKAPENPME-FRP 910
P+GF A FYQ+Y + + + I +G+ P S + I LIPK E FRP
Sbjct: 472 PEGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTTKKENFRP 531
Query: 911 ISLCNVIMKLVTKCIANRIKDVLGEVVGEQQSAFIPGRLITDNALTGFEVFHYMKKKRKG 970
ISL N+ K++ K +AN+I+ + +++ Q FIP N + ++ + +
Sbjct: 532 ISLMNIDAKILNKILANQIQQHIKKLIHHDQVGFIPAMQGWFNIRKSINIIQHINRTKD- 590
Query: 971 KKGYMALKLDMSKAYDRIEWDFLKQVLTTMGFPSKITELISICVSSVSYSLLVNGEP--S 1028
+M + +D KA+D+I+ F+ + L +G ++I + ++++NG+ +
Sbjct: 591 -TNHMIISIDAEKAFDKIQQPFMLKPLNKLGIDGTYLKIIRAIYDKPTANIILNGQKLEA 649
Query: 1029 PPFSPQRGLRQGDPLSPYLFILCVEAFSGLISNQIRLRNLHGIKVARGAPPINHLFFADD 1088
PP + G RQG PLSP L + +E + I + + + GI++ G + FADD
Sbjct: 650 PPL--KTGTRQGCPLSPLLPNIVLEVLARAIRQE---KEIKGIQL--GKEEVKLSLFADD 702
Query: 1089 SLIFSRATQEEASSLLDVIRQYEQASGQLVNMDKSEISFSRNVPQTSMDTIRNRMGVKAV 1148
+++ A +LL +I + + SG +N+ KS+ N QT I + +
Sbjct: 703 MIVYLENPIVSAQNLLKLISNFSKVSGYKINVQKSQAFLYTNNRQTE-SQIMSELPFTIA 761
Query: 1149 IVHDKYLGLPTVIGHSKKAIFGKIQERVWRKLK----GWKEKTLSKAGKEILIK--AVAQ 1202
KYLG+ + K +F + + + ++K WK S G+ ++K + +
Sbjct: 762 SKRIKYLGIQ--LTRDVKDLFKENYKPLLNEIKEDTNKWKNIPCSWVGRINIVKMAILPK 819
Query: 1203 AIPSYVMSCFKLPNGICSKIESLLANFWWGQKENERKIHWAAWQHLCKTKNRGDLGFRNL 1262
I + KLP +++E F W QK A L + G + +
Sbjct: 820 VIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRAH-----IAKSTLSQKNKAGGITLPDF 874
Query: 1263 EDFNRALLAKQAW 1275
+ + +A + K AW
Sbjct: 875 KLYYKATVTKTAW 887
>YTX2_XENLA (P14381) Transposon TX1 hypothetical 149 kDa protein (ORF
2)
Length = 1308
Score = 161 bits (408), Expect = 1e-38
Identities = 142/563 (25%), Positives = 253/563 (44%), Gaps = 35/563 (6%)
Query: 691 EFGSIRKKLHDLEQRLKAAQKWNPTEENIMRRKEMENEFAELMGREELYWRQRSRATWLK 750
E ++ ++ DLEQRL ++ E + R++ + N + R+ RSR L
Sbjct: 311 EIEALNGEVLDLEQRLSGSEDQALQCEYLERKEALRN----MEQRQARGAFVRSRMQLLC 366
Query: 751 EGDKNTSFFHGKANQRQKQNRIARIRDDHGNWVYKQDQVTTAFSNYFEGIFKSSQPNNIE 810
+ D+ + FF+ ++ + +I + + G + + + ++++ +F P+ I
Sbjct: 367 DMDRGSRFFYALEKKKGNRKQITCLFAEDGTPLEDPEAIRDRARSFYQNLFS---PDPIS 423
Query: 811 -EVCQKIQNKL---NQEMREHLEEEFTADEVAYALNQMHPLKAPGPDGFPALFYQKYWKL 866
+ C+++ + L ++ +E LE T DE++ AL M K+PG DG F+Q +W
Sbjct: 424 PDACEELWDGLPVVSERRKERLETPITLDELSQALRLMPHNKSPGLDGLTIEFFQFFWDT 483
Query: 867 VGGDVTSQVLEILNKGVDPASLNQTFICLIPKVKAPENPMEFRPISLCNVIMKLVTKCIA 926
+G D + E KG P S + + L+PK +RP+SL + K+V K I+
Sbjct: 484 LGPDFHRVLTEAFKKGELPLSCRRAVLSLLPKKGDLRLIKNWRPVSLLSTDYKIVAKAIS 543
Query: 927 NRIKDVLGEVVGEQQSAFIPGRLITDNALTGFEVFHYMKKKRKGKKGYMALKLDMSKAYD 986
R+K VL EV+ QS +PGR I DN ++ H+ R+ L LD KA+D
Sbjct: 544 LRLKSVLAEVIHPDQSYTVPGRTIFDNVFLIRDLLHF---ARRTGLSLAFLSLDQEKAFD 600
Query: 987 RIEWDFLKQVLTTMGFPSKITELISICVSSVSYSLLVNGEPSPPFSPQRGLRQGDPLSPY 1046
R++ +L L F + + +S + +N + P + RG+RQG PLS
Sbjct: 601 RVDHQYLIGTLQAYSFGPQFVGYLKTMYASAECLVKINWSLTAPLAFGRGVRQGCPLSGQ 660
Query: 1047 LFILCVEAFSGLISNQIRLRNLHGIKVARGAPPINHLFFADDSLIFSR--ATQEEASSLL 1104
L+ L +E F L+ + L G+ + + +ADD ++ ++ E A
Sbjct: 661 LYSLAIEPFLCLLR-----KRLTGLVLKEPDMRVVLSAYADDVILVAQDLVDLERAQECQ 715
Query: 1105 DVIRQYEQASGQLVNMDKSEISFSRNVPQTSMDTIRNRMGVKAVIVHDKYLGL-PTVIGH 1163
+V Y AS +N KS ++ + + ++ I+ KYLG+ + +
Sbjct: 716 EV---YAAASSARINWSKSSGLLEGSLKVDFLPPAFRDISWESKII--KYLGVYLSAEEY 770
Query: 1164 SKKAIFGKIQERVWRKLKGWK--EKTLSKAGKEILIKAVAQAIPSYVMSCFKLPNGICSK 1221
F +++E V +L WK K LS G+ ++I + + Y + C +K
Sbjct: 771 PVSQNFIELEECVLTRLGKWKGFAKVLSMRGRALVINQLVASQIWYRLICLSPTQEFIAK 830
Query: 1222 IESLLANFWWGQKENERKIHWAA 1244
I+ L +F W K HW +
Sbjct: 831 IQRRLLDFLWIGK------HWVS 847
>M310_ARATH (P93295) Hypothetical mitochondrial protein AtMg00310
(ORF154)
Length = 154
Score = 142 bits (357), Expect = 1e-32
Identities = 63/143 (44%), Positives = 95/143 (66%), Gaps = 1/143 (0%)
Query: 1203 AIPSYVMSCFKLPNGICSKIESLLANFWWGQKENERKIHWAAWQHLCKTK-NRGDLGFRN 1261
A+P Y MSCF+L +C K+ S + FWW EN+RKI W AWQ LCK+K + G LGFR+
Sbjct: 2 ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRD 61
Query: 1262 LEDFNRALLAKQAWRLLNSEKSLLYKVWKAKYFPKCDLLKAGVGYQPSYAWRSVWGTLKF 1321
L FN+ALLAKQ++R+++ +LL ++ +++YFP +++ VG +PSYAWRS+ +
Sbjct: 62 LGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGREL 121
Query: 1322 IEEGCKWSIGNGKKVSIWKDPWL 1344
+ G +IG+G +W D W+
Sbjct: 122 LSRGLLRTIGDGIHTKVWLDRWI 144
>POLR_DROME (P16423) Retrovirus-related Pol polyprotein from type II
retrotransposable element R2DM [Contains: Protease (EC
3.4.23.-); Reverse transcriptase (EC 2.7.7.49);
Endonuclease]
Length = 1057
Score = 89.0 bits (219), Expect = 1e-16
Identities = 84/328 (25%), Positives = 139/328 (41%), Gaps = 26/328 (7%)
Query: 796 YFEGIFKSSQPNNIEEVCQKIQNKLNQEMREHLEEEFTADEVAYALNQMHPLKAPGPDGF 855
Y+ + P++ ++ + L + E++ A V+ + +PGPDG
Sbjct: 313 YWREVMTQPSPSSCSGEVIQMDHSLERVWSAITEQDLRASRVSLS-------SSPGPDGI 365
Query: 856 PALFYQKYWKLVGGDVTSQVLE-ILNKGVDPASLNQTFICLIPKVKAPENPMEFRPISLC 914
K + V + +++ IL G P S+ IPK + P +FRPIS+
Sbjct: 366 TP----KSAREVPSGIMLRIMNLILWCGNLPHSIRLARTVFIPKTVTAKRPQDFRPISVP 421
Query: 915 NVIMKLVTKCIANRIKDVLGEVVGEQQSAFIPGRLITDNALTGFEVFHYMKKKRKGKKGY 974
+V+++ + +A R+ + +Q F+P DNA V ++ K +
Sbjct: 422 SVLVRQLNAILATRLNSSINW--DPRQRGFLPTDGCADNATI---VDLVLRHSHKHFRSC 476
Query: 975 MALKLDMSKAYDRIEWDFLKQVLTTMGFPSKITELISICVSSVSYSLLVNGEPSPPFSPQ 1034
LD+SKA+D + + L G P + + SL +G S F P
Sbjct: 477 YIANLDVSKAFDSLSHASIYDTLRAYGAPKGFVDYVQNTYEGGGTSLNGDGWSSEEFVPA 536
Query: 1035 RGLRQGDPLSPYLFILCVEAFSGLISNQIRLRNLHGIKVARGAPPINHLFFADDSLIFSR 1094
RG++QGDPLSP LF L ++ + ++I G KV G N FADD ++F+
Sbjct: 537 RGVKQGDPLSPILFNLVMDRLLRTLPSEI------GAKV--GNAITNAAAFADDLVLFAE 588
Query: 1095 ATQEEASSLLDVIRQYEQASGQLVNMDK 1122
T+ LLD + G +N DK
Sbjct: 589 -TRMGLQVLLDKTLDFLSIVGLKLNADK 615
>MC50_ARATH (P92555) Hypothetical mitochondrial protein AtMg01250
(ORF102)
Length = 122
Score = 80.5 bits (197), Expect = 4e-14
Identities = 38/68 (55%), Positives = 45/68 (65%)
Query: 1022 LVNGEPSPPFSPQRGLRQGDPLSPYLFILCVEAFSGLISNQIRLRNLHGIKVARGAPPIN 1081
++NG P +P RGLRQGDPLSPYLFILC E SGL L GI+V+ +P IN
Sbjct: 13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRIN 72
Query: 1082 HLFFADDS 1089
HL FADD+
Sbjct: 73 HLLFADDT 80
>PO22_POPJA (Q03274) Retrovirus-related Pol polyprotein from type I
retrotransposable element R2 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 711
Score = 77.4 bits (189), Expect = 3e-13
Identities = 69/266 (25%), Positives = 118/266 (43%), Gaps = 18/266 (6%)
Query: 827 HLEEEFTADEVAYALNQMHPLKAPGPDGFPALFYQKYWKLVGGDVTSQVLEILNKGVDPA 886
H +E+ A+ P APG DG + +L V +L +G P
Sbjct: 1 HTYRPIAREEIQCAIKGWKP-SAPGSDGLTVQAITRT-RLPRNFVQLHLL----RGHVPT 54
Query: 887 SLNQTFICLIPKVKAPENPMEFRPISLCNVIMKLVTKCIANRIKDVLGEVVGEQQSAFIP 946
LIPK ENP +RPI++ + + +L+ + +A R++ + ++ A I
Sbjct: 55 PWTAMRTTLIPKDGDLENPSNWRPITIASALQRLLHRILAKRLEAAVELHPAQKGYARID 114
Query: 947 GRLITDNALTGFEVFHYMKKKRKGKKGYMALKLDMSKAYDRIEWDFLKQVLTTMGFPSKI 1006
G L+ L Y+ +R+ +K Y + LD+ KA+D + + + L +G
Sbjct: 115 GTLVNSLLLD-----TYISSRREQRKTYNVVSLDVRKAFDTVSHSSICRALQRLGIDEGT 169
Query: 1007 TELISICVSSVSYSLLVN-GEPSPPFSPQRGLRQGDPLSPYLFILCVEAFSGLISNQIRL 1065
+ I+ +S + ++ V G + +RG++QGDPLSP+LF ++ L
Sbjct: 170 SNYITGSLSDSTTTIRVGPGSQTRKICIRRGVKQGDPLSPFLFNAVLDEL------LCSL 223
Query: 1066 RNLHGIKVARGAPPINHLFFADDSLI 1091
++ GI G I L FADD L+
Sbjct: 224 QSTPGIGGTIGEEKIPVLAFADDLLL 249
>PO21_NASVI (Q03278) Retrovirus-related Pol polyprotein from type I
retrotransposable element R2 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 1025
Score = 73.9 bits (180), Expect = 4e-12
Identities = 72/256 (28%), Positives = 109/256 (42%), Gaps = 19/256 (7%)
Query: 849 APGPDGFPALFYQKYWKLVGGDVTSQVLEILNKGVDPASLNQTFICLIPKVKAPENPMEF 908
A GPDG W + + S I+ G P + LIPK +P F
Sbjct: 334 AAGPDGMTTTA----WNSIDECIKSLFNMIMYHGQCPRRYLDSRTVLIPKEPGTMDPACF 389
Query: 909 RPISLCNVIMKLVTKCIANRIKDVLGEVVGEQQSAFIPGRLITDNALTGFEVFHYMKKKR 968
RP+S+ +V ++ + +ANRI + ++ +Q AFI + +N + + K
Sbjct: 390 RPLSIASVALRHFHRILANRIGE--HGLLDTRQRAFIVADGVAENTSLLSAMIKEARMKI 447
Query: 969 KGKKGYMALKLDMSKAYDRIEWDFLKQVLTTMGFPSKITELISICVSSVSYSLLVNGEPS 1028
KG Y+A+ LD+ KA+D +E + L P ++ I + L V
Sbjct: 448 KGL--YIAI-LDVKKAFDSVEHRSILDALRRKKLPLEMRNYIMWVYRNSKTRLEVVKTKG 504
Query: 1029 PPFSPQRGLRQGDPLSPYLFILCVEAFSGLISNQIRLRNL-HGIKVARGAPPINHLFFAD 1087
P RG+RQGDPLSP LF ++A LR L GA I L FAD
Sbjct: 505 RWIRPARGVRQGDPLSPLLFNCVMDAV---------LRRLPENTGFLMGAEKIGALVFAD 555
Query: 1088 DSLIFSRATQEEASSL 1103
D ++ + + +SL
Sbjct: 556 DLVLLAETREGLQASL 571
>PO21_SCICO (Q03279) Retrovirus-related Pol polyprotein from type I
retrotransposable element R2 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 869
Score = 65.9 bits (159), Expect = 1e-09
Identities = 82/322 (25%), Positives = 143/322 (43%), Gaps = 33/322 (10%)
Query: 848 KAPGPDGFPALFYQKYWKLVGGDVTSQVLEI-LNKGVDPASLNQTFICLIPKVKAPENPM 906
K GPDG + W + + I + G P+ + + PK++ +P
Sbjct: 173 KGAGPDGVTP----RSWNALDDRYKRLLYNIFVFYGRVPSPIKGSRTVFTPKIEGGPDPG 228
Query: 907 EFRPISLCNVIMKLVTKCIANRIKDVLGEVVGEQQSAFIP--GRLITDNALTGFEVFHYM 964
FRP+S+C+VI++ K +A R V E+Q+A++P G I + LT
Sbjct: 229 VFRPLSICSVILREFNKILARRF--VSCYTYDERQTAYLPIDGVCINVSMLTAI----IA 282
Query: 965 KKKRKGKKGYMALKLDMSKAYDRIEWDFLKQVLTTMGFPSKITELISICVSSVSYSLLVN 1024
+ KR K+ ++A+ LD+ KA++ + L +T G P + + I+ ++V +
Sbjct: 283 EAKRLRKELHIAI-LDLVKAFNSVYHSALIDAITEAGCPPGVVDYIADMYNNVITEMQFE 341
Query: 1025 GEPSPPFSPQRGLRQGDPLSPYLFILCVEAFSGLISNQIRLRNLHGIKVARGAPPINHLF 1084
G+ S G+ QGDPLS LF L E ++N+ R ++ ++V A
Sbjct: 342 GK-CELASILAGVYQGDPLSGPLFTLAYEKALRALNNEGRF-DIADVRVNASA------- 392
Query: 1085 FADDSLIFSRATQEEASSLLDVIRQYEQASGQLVNMDKSE-ISFSRNVPQTSMDTIRNR- 1142
++DD L+ + T LD + G +N KS+ +S + + M + NR
Sbjct: 393 YSDDGLLLA-MTVIGLQHNLDKFGETLAKIGLRINSRKSKTVSLVPSGREKKMKIVSNRR 451
Query: 1143 -----MGVKAVIVHD--KYLGL 1157
+K + + D KYLG+
Sbjct: 452 LLLKASELKPLTISDLWKYLGV 473
>YMH5_CAEEL (P34472) Hypothetical protein F58A4.5 in chromosome III
Length = 1222
Score = 58.5 bits (140), Expect = 2e-07
Identities = 62/255 (24%), Positives = 101/255 (39%), Gaps = 28/255 (10%)
Query: 885 PASLNQTFICLIPKVKAPENPMEFRPISLCNVIMKLVTKCIANRIKDVLGEVVGEQQSAF 944
P I IPK P +P +RPISL + +++ + I +RI+ ++ Q F
Sbjct: 662 PNRWKHAVIIPIPKKGNPSSPSNYRPISLTDPFARIMERIICSRIRSEYSHLLSPHQHGF 721
Query: 945 IPGRLITDNALTGFEVFHYMKKKRKGKKGYMALKLDMSKAYDRIEWDFLKQVLTTMGFP- 1003
+ R + + ++H + K +K L D +KA+D++ L + L G
Sbjct: 722 LNFRSCPSSLVRSISLYHSI---LKNEKSLDILFFDFAKAFDKVSHPILLKKLALFGLDK 778
Query: 1004 ---SKITELISICVSSVSYSLLVNGEPSPPFSPQRGLRQGDPLSPYLFILCVEAFSGLIS 1060
S E + + SV + V+ P S G+ QG P LFIL + LI
Sbjct: 779 LTCSWFKEFLHLRTFSVKINKFVSSNAYPISS---GVPQGSVSGPLLFILFINDL--LID 833
Query: 1061 NQIRLRNLHGIKVARGAPPINHLFFADDSLIFSRATQEEASSLLDVIRQYEQASGQLVNM 1120
+ P I+ FADD IF +S+ +++ ++ L
Sbjct: 834 LE---------------PNIHVSCFADDIKIFHHNPSTLQNSIDTIVKWSKKNKLPLAPA 878
Query: 1121 DKSEISF-SRNVPQT 1134
S +S SRN T
Sbjct: 879 KSSVLSLGSRNSNHT 893
>PO23_POPJA (Q05118) Retrovirus-related Pol polyprotein from type I
retrotransposable element R2 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 606
Score = 58.5 bits (140), Expect = 2e-07
Identities = 55/204 (26%), Positives = 92/204 (44%), Gaps = 16/204 (7%)
Query: 962 HYMKKKRKGKKGYMALKLDMSKAYDRIEWDFLKQVLTTMGFPSKITELISICVSSVSYSL 1021
HY+K +R K Y + LD+ KA+D + + + + G + + I ++ ++
Sbjct: 11 HYIKLRRLKGKTYNVVSLDIRKAFDTVSHPAILRAMRAFGIDDGMQDFIMSTITDAYTNI 70
Query: 1022 LVNGEPSPPFSPQRGLRQGDPLSPYLF-ILCVEAFSGLISNQIRLRNLHGIKVARGAPPI 1080
+V G + + G++QGDPLSP LF I+ E + L Q K+A
Sbjct: 71 VVGGRTTNKIYIRNGVKQGDPLSPVLFNIVLDELVTRLNDEQPGASMTPACKIA------ 124
Query: 1081 NHLFFADDSLIFSRATQEEASSLLDVIRQYEQASGQLVNMDK-SEISFS----RNVPQTS 1135
L FADD L+ + +SL Y + G +N +K + IS + R+VP++
Sbjct: 125 -SLAFADDLLLLEDRDIDVPNSLATTC-AYFRTRGMTLNPEKCASISAATVSGRSVPRSK 182
Query: 1136 MDTIRNRMGVKAV--IVHDKYLGL 1157
+ +K + I KYLGL
Sbjct: 183 PSFTIDGRYIKPLGGINTFKYLGL 206
>RTJK_DROFU (P21329) RNA-directed DNA polymerase from mobile element
jockey (EC 2.7.7.49) (Reverse transcriptase)
Length = 916
Score = 57.4 bits (137), Expect = 3e-07
Identities = 125/583 (21%), Positives = 242/583 (41%), Gaps = 68/583 (11%)
Query: 613 SVQHLLRYNSDHAPLLITVTSQPIEEGKK-----KKKKLFRFEQHLTLNHELAFHLRQAW 667
+VQ L +SDH PLL + + PI + + + + RF+ +LT + +L+ ++
Sbjct: 203 NVQTLHELSSDHTPLLADLHAMPINKPPRSCLLARGADIERFKAYLTQHIDLSVGIQ--- 259
Query: 668 QSGGDNAEQKLAQAKETIM-ALETEFGSIRKKLHDLEQ-----------RLKAAQKWNPT 715
G D+ + + + + A S ++ + Q RLK +
Sbjct: 260 --GTDDIDNAIDSFMDILKRAAIRSAPSHQQNVESSRQLQLPPIVASLIRLKRKVRREYA 317
Query: 716 EENIMRRKEMENEFAELMGREELYWRQRSRATWLKEG---DKNTSFFHGKANQRQKQNRI 772
R +++ + A + + L R++S+ L E D +T+F + +R K
Sbjct: 318 RTGDARIQQIHSRLANRL-HKVLNRRKQSQIDNLLENLDTDGSTNFSLWRITKRYKTQAT 376
Query: 773 --ARIRDDHGNWVYKQDQVTTAFSNYFEGIFKS---SQPNNIEEVCQKIQNKLNQEMREH 827
+ IR+ G W + T F+N+ E FK+ + ++ V + +Q +
Sbjct: 377 PNSAIRNPAGGWCRTSREKTEVFANHLEQRFKALAFAPESHSLMVAESLQTPFQMALP-- 434
Query: 828 LEEEFTADEVAYALNQMHPLKAPGPDGFPALFYQKYWKLVGGDVTSQVLEILNK----GV 883
+ T +EV ++++ P KAPG D L + +L+ ++ I N G
Sbjct: 435 -ADPVTLEEVKELVSKLKPKKAPGED----LLDNRTIRLLPDQALLYLVLIFNSILRVGY 489
Query: 884 DP-ASLNQTFICLIPKVKAPENPMEFRPISLCNVIMKLVTKCIANRI--KDVLGEVVGEQ 940
P A + I ++ K P + +RP SL + K++ + I NRI + + + +
Sbjct: 490 FPKARPTASIIMILKPGKQPLDVDSYRPTSLLPSLGKMLERLILNRILTSEEVTRAIPKF 549
Query: 941 QSAFIPGRLITDNALTGFEVFHYMKKKRKGKKGYMALKLDMSKAYDRIEWDFLKQVLTTM 1000
Q F RL V ++ + + K+ + LD+ +A+DR+ L ++
Sbjct: 550 QFGF---RLQHGTPEQLHRVVNFALEALEKKEYAGSCFLDIQQAFDRVWHPGLLYKAKSL 606
Query: 1001 GFPSKITELISICVSSVSYSLLVNGEPSPPFSPQRGLRQGDPLSPYLFILCVEAFSGLIS 1060
P ++ +LI +S+ +G S + G+ QG L P L+ + F+ +
Sbjct: 607 LSP-QLFQLIKSFWEGRKFSVTADGCRSSVKFIEAGVPQGSVLGPTLYSI----FTADMP 661
Query: 1061 NQIRLRNLHGIKVARGAPPINHLFFADDSLIFSRATQEEASSLLDVIRQYEQASGQLVNM 1120
NQ + L A G I +ADD + +++T ++ D +++Y A +
Sbjct: 662 NQNAVTGL-----AEGEVLI--ATYADDIAVLTKSTCIVEAT--DALQEYLDAFQEWAVK 712
Query: 1121 DKSEISFSRNVPQTSMDTIRNRMGVK---AVIVHD---KYLGL 1157
I+ + T + IR+ GV +++ H KYLG+
Sbjct: 713 WNVSINAGKCANVTFTNAIRDCPGVTINGSLLSHTHEYKYLGV 755
>RTJK_DROME (P21328) RNA-directed DNA polymerase from mobile element
jockey (EC 2.7.7.49) (Reverse transcriptase)
Length = 916
Score = 55.8 bits (133), Expect = 1e-06
Identities = 101/473 (21%), Positives = 190/473 (39%), Gaps = 61/473 (12%)
Query: 614 VQHLLRYNSDHAPLLITVTSQPIEEGKKKK-----KKLFRFEQHLTLNHELAFHLRQAWQ 668
VQ L +SDH P+L + + P+++ ++ + + F+ HL E+ + +A
Sbjct: 204 VQTLQELSSDHLPILAVLHATPLKKPQRVRLLAHNADINIFKTHLEQLSEVNMQILEAVD 263
Query: 669 SGGDNAE----QKLAQAKETIMALETEFGSIRKKLHDLEQ--------------RLKAAQ 710
DNA KL++A + + + H++E RLK
Sbjct: 264 I--DNATSLFMSKLSEAAQL---------AAPRNRHEVEAFRPLQLPSSILALLRLKRRV 312
Query: 711 KWNPTEENIMRRKEMENEFAELMGREELYWRQRSRATWLKE--GDKNTSFFHGKANQRQK 768
+ R +++ + A + + +Q T+L D +T++ + +R K
Sbjct: 313 RKEYARTGDPRMQQIHSRLANCLHKALARRKQAQIDTFLDNLGADASTNYSLWRITKRFK 372
Query: 769 QNRIAR--IRDDHGNWVYKQDQVTTAFSNYFEGIFKSSQPNNI--EEVCQKIQNKLNQEM 824
+ I++ G W + T F+N E F P N E +C++++ L
Sbjct: 373 AQPTPKSAIKNPSGGWCRTSLEKTEVFANNLEQRF---TPYNYAPESLCRQVEEYLESPF 429
Query: 825 REHLE-EEFTADEVAYALNQMHPLKAPGPDGFPALFYQKYWKLVGGDVTSQVLEILNKGV 883
+ L T +EV + ++ KAPG D L + +L+ + I N +
Sbjct: 430 QMSLPLSAVTLEEVKNLIAKLPLKKAPGED----LLDNRTIRLLPDQALQFLALIFNSVL 485
Query: 884 D----PASLNQTFICLIPKV-KAPENPMEFRPISLCNVIMKLVTKCIANRI---KDVLGE 935
D P + I +I K K P + +RP SL + K++ + I NR+ KDV +
Sbjct: 486 DVGYFPKAWKSASIIMIHKTGKTPTDVDSYRPTSLLPSLGKIMERLILNRLLTCKDVT-K 544
Query: 936 VVGEQQSAFIPGRLITDNALTGFEVFHYMKKKRKGKKGYMALKLDMSKAYDRIEWDFLKQ 995
+ + Q F RL V ++ + + K+ + LD+ +A+DR+ W
Sbjct: 545 AIPKFQFGF---RLQHGTPEQLHRVVNFALEAMENKEYAVGAFLDIQQAFDRV-WHPGLL 600
Query: 996 VLTTMGFPSKITELISICVSSVSYSLLVNGEPSPPFSPQRGLRQGDPLSPYLF 1048
FP ++ ++ + ++ + V+G S G+ QG L P L+
Sbjct: 601 YKAKRLFPPQLYLVVKSFLEERTFHVSVDGYKSSIKPIAAGVPQGSVLGPTLY 653
>YO84_CAEEL (P34620) Hypothetical protein ZK1236.4 in chromosome III
Length = 364
Score = 42.0 bits (97), Expect = 0.015
Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 21/149 (14%)
Query: 979 LDMSKAYDRIEWDFLKQVLTTMGFPSKITELISICVSSVSYSLLVNGEPSPPFSPQRGLR 1038
LD SKA+D++ D L LT++ + + + +++ S+ + V S P G+
Sbjct: 23 LDFSKAFDKVSHDILLDKLTSIKINKHLIRWLDVFLTNRSFKVKVGNTLSEPKKTVCGVP 82
Query: 1039 QGDPLSPYLFILCVEAFSGLISNQIRLRNLHGIKVARGAPPINHLFFADDSLIFSRATQE 1098
QG +SP LF G+ N+I G+ + FADD +++ +
Sbjct: 83 QGSVISPVLF--------GIFVNEISANLPVGVYCKQ---------FADDIKLYAAIPKN 125
Query: 1099 EASSLL----DVIRQYEQASGQLVNMDKS 1123
++ L DV+ + + L+N K+
Sbjct: 126 QSQISLQLAIDVVTDWALNNKLLLNPSKT 154
>Y2R2_DROME (P16425) Hypothetical 115 kDa protein in type I
retrotransposable element R1DM (ORF 2)
Length = 1021
Score = 40.4 bits (93), Expect = 0.044
Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 16/172 (9%)
Query: 836 EVAYALNQMHPLKAPGPDGFPALFYQKYWKLVGGDVTSQVLEILNKGVDPASLNQTFICL 895
EV + ++ ++PG DG + W+ + + S + G PA +
Sbjct: 438 EVDTCVARLKSRRSPGLDGINGTICKAVWRAIPEHLASLFSRCIRLGYFPAEWKCPRV-- 495
Query: 896 IPKVKAPE----NPMEFRPISLCNVIMKLVTKCIANRIKDVLGEVVGEQQSAFIPGRLIT 951
+ +K P+ P +R I L V K++ + NR+++VL E Q F GR +
Sbjct: 496 VSLLKGPDKDKCEPSSYRGICLLPVFGKVLEAIMVNRVREVLPEGC-RWQFGFRQGRCVE 554
Query: 952 DNALTGFEVFHYMKKKRKGKKGYMALK--LDMSKAYDRIEWDFLKQVLTTMG 1001
D + ++K L +D A+D +EW L +G
Sbjct: 555 D-------AWRHVKSSVGASAAQYVLGTFVDFKGAFDNVEWSAALSRLADLG 599
>ROC2_BOVIN (Q28021) Rho-associated protein kinase 2 (EC 2.7.1.37)
(Rho-associated, coiled-coil containing protein kinase
2) (p164 ROCK-2)
Length = 1388
Score = 38.9 bits (89), Expect = 0.13
Identities = 51/234 (21%), Positives = 94/234 (39%), Gaps = 41/234 (17%)
Query: 575 FQGDPFTWCNGRKDEAHIQERLDRGVISQSFKEIW-----------PASSV--------- 614
F+ D + W N R+ A + L + S +F +I P + V
Sbjct: 354 FKNDQWNWDNIRETAAPVVPELSSDIDSSNFDDIEDDKGDVETFPIPKAFVGNQLPFIGF 413
Query: 615 ----QHLLRYNSDHAPLLITVTSQPIEEGKKKKKKLFRFEQHLTLNHELAFHLRQAWQSG 670
++LL +S ++ S+ EE ++ +KKL+ E+HL+ + L Q +S
Sbjct: 414 TYYRENLLLSDSPSCKENDSIQSRKNEESQEIQKKLYTLEEHLSTEIQAKEELEQKCKSV 473
Query: 671 GDNAEQKLAQAKETIMALETEFGSIRKKLHDLEQRL--KAAQKWNPTEENIMRRKEMENE 728
E K+A+ E + L S ++L + L K A+ + +++ +EN+
Sbjct: 474 NTRLE-KVAKELEEEITLRKNVESTLRQLEREKALLQHKNAEYQRKADHEADKKRNLEND 532
Query: 729 FAELMGREELYWRQRSRATWLKEGDKNTSFFHGKANQRQKQ----NRIARIRDD 778
L + + LK+ ++N+ K NQ Q+Q N + R D
Sbjct: 533 VNSL----------KDQLEDLKKRNQNSQISTEKVNQLQRQLDETNALLRTESD 576
>MY5B_RAT (P70569) Myosin Vb (Myosin 5B) (Myosin heavy chain myr 6)
Length = 1846
Score = 38.1 bits (87), Expect = 0.22
Identities = 44/197 (22%), Positives = 79/197 (39%), Gaps = 20/197 (10%)
Query: 587 KDEAHIQERLDRGVISQSFKEIWPASSVQHLLRYNSDHAPLLITVTSQPIEEGKKKKKKL 646
K EA E L R + K + + + + L VTS E +K KK+L
Sbjct: 909 KIEARSAEHLKRLNVGMENKVVQLQRKIDDQNKEFKTLSEQLSAVTSTHAMEVEKLKKEL 968
Query: 647 FRFEQHLTLNHELAFHLRQAWQSGGDNAEQKLAQAKETIMALETEFGSIRKKLHDLE--- 703
R++Q+ + L L++ QS ++ ++ + A E G +RK++ DLE
Sbjct: 969 ARYQQNQEADPSL--QLQEEVQSLRTELQKAHSERRVLEDAHNRENGELRKRVADLEHEN 1026
Query: 704 ---------------QRLKAAQKWNPTEENIMRRKEMENEFAELMGREELYWRQRSRATW 748
++ KA + EEN++ +KE+E E + + Y + R
Sbjct: 1027 ALLKDEKEHLNHQILRQSKAESSQSSVEENLLIKKELEEERSRYQNLVKEYSQLEQRYEN 1086
Query: 749 LKEGDKNTSFFHGKANQ 765
L++ + +NQ
Sbjct: 1087 LRDEQQTPGHRKNPSNQ 1103
>RA50_PYRFU (P58301) DNA double-strand break repair rad50 ATPase
Length = 882
Score = 37.7 bits (86), Expect = 0.28
Identities = 45/199 (22%), Positives = 88/199 (43%), Gaps = 31/199 (15%)
Query: 672 DNAEQKLAQAKETIMALETEFGSIRKKLHDLEQRLK--------AAQKWNPTEENI---- 719
+ A +KL++ K+TI E+ I + ++E+ +K Q+ + EE +
Sbjct: 167 ETAYKKLSELKKTINNRIKEYRDILARTENIEELIKENEQELIQVLQEISKIEEVLPSKR 226
Query: 720 ----MRRKE---MENEFAELMGREELYWRQRSRATWLKEGDKNTSFFHGKANQRQKQ--- 769
M RKE +E E+ E L ++R L+E KNT + K +++K+
Sbjct: 227 SKVDMLRKEVLRLEETKVEIENSERLLEKRRGDKRTLEERIKNTEEYLEKLKEKEKELEE 286
Query: 770 --NRIARIRDDHGNWVYKQDQVTTAFSN-YFEGIFK-SSQPNNIEEVCQKIQNKLNQEMR 825
I I+ D ++ ++ F N Y + +K + +EE+ +IQ ++ +
Sbjct: 287 QVKEITSIKKDVDAYLALKE-----FKNEYLDKKYKIEKELTRVEELINEIQKRIEELNE 341
Query: 826 EHLEEEFTADEVAYALNQM 844
+ E+E +E LN++
Sbjct: 342 KESEKEKLENEKKEILNKL 360
>APEA_DICDI (P51173) DNA-(apurinic or apyrimidinic site) lyase (EC
4.2.99.18) (Class II
apurinic/apyrimidinic(AP)-endonuclease)
Length = 361
Score = 37.7 bits (86), Expect = 0.28
Identities = 61/263 (23%), Positives = 95/263 (35%), Gaps = 37/263 (14%)
Query: 397 MKTISWNCRGVGSPRTVKVLQRIIKAEDPDIVFLMETHKKNGELKNIVARLGFKNHLGVE 456
MK ISWN G S + K ++ E+PD++ L ET +K G++ H +E
Sbjct: 105 MKIISWNVAGFKSVLS-KGFTECVEKENPDVLCLQETKINPSNIKKDQMPKGYEYHF-IE 162
Query: 457 CRGEGRSSGGGLALLWKEDFNIDIISYSLHHITASHTNADQ-ITCFLTGFY--------- 506
+G G +L K+ N + A H N + IT FY
Sbjct: 163 ADQKGHH---GTGVLTKKKPNAITFGIGI----AKHDNEGRVITLEYVQFYIVNTYIPNA 215
Query: 507 ---GYPESQNKIKSWDLLVRL---KGETSGPWMCFGDFN------EITSNAEKKGGIDRP 554
G +IK WD+ + K + P + GD N ++ + K
Sbjct: 216 GTRGLQRLDYRIKEWDVDFQAYLEKLNATKPIIWCGDLNVAHTEIDLKNPKTNKKSAGFT 275
Query: 555 IEHMKKFVRCLNQCGLEDM-----GFQGDPFTWCN-GRKDEAHIQERLDRGVISQSFKEI 608
IE F L + ++ G +G W G ++ RLD V+S+ +
Sbjct: 276 IEERTSFSNFLEKGYVDSYRHFNPGKEGSYTFWSYLGGGRSKNVGWRLDYFVVSKRLMDS 335
Query: 609 WPASSVQHLLRYNSDHAPLLITV 631
S SDH P+ + V
Sbjct: 336 IKISPFHRTSVMGSDHCPIGVVV 358
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.329 0.141 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 208,818,201
Number of Sequences: 164201
Number of extensions: 8914462
Number of successful extensions: 26179
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 26051
Number of HSP's gapped (non-prelim): 163
length of query: 1758
length of database: 59,974,054
effective HSP length: 124
effective length of query: 1634
effective length of database: 39,613,130
effective search space: 64727854420
effective search space used: 64727854420
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 73 (32.7 bits)
Lotus: description of TM0191.8