BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0190.5
(331 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RMX2_MOUSE (Q8R0F5) RNA binding motif protein, X-linked 2 32 2.2
KFC2_MOUSE (O08672) Kinesin-like protein KIFC2 32 2.9
ISPF_CORDI (Q6NFC2) 2-C-methyl-D-erythritol 2,4-cyclodiphosphate... 32 2.9
PRAX_HUMAN (Q9BXM0) Periaxin 31 3.8
FIXB_SALTY (P64095) FixB protein 30 6.4
FIXB_SALTI (P64096) FixB protein 30 6.4
CKRA_HUMAN (P46092) C-C chemokine receptor type 10 (C-C CKR-10) ... 30 6.4
C125_MYCTU (P63709) Putative cytochrome P450 125 (EC 1.14.-.-) 30 8.4
C125_MYCBO (P63710) Putative cytochrome P450 125 (EC 1.14.-.-) 30 8.4
>RMX2_MOUSE (Q8R0F5) RNA binding motif protein, X-linked 2
Length = 326
Score = 32.0 bits (71), Expect = 2.2
Identities = 42/190 (22%), Positives = 74/190 (38%), Gaps = 34/190 (17%)
Query: 142 IDSLSYQLFEFDLRCIFSPQ-QLVSERLVRGTEAGVPK--------------VSIDGVVR 186
+ L Y+L E D+ C+FS ++V+ LVR + G K +++D
Sbjct: 40 VGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNG 99
Query: 187 WSVPFLTVERTAVQGWIASADGRTMGDVVEGLTFEGEIVGIKCWSQVPHQRSQDVVSKIS 246
+ T+ V + A + + DV L +G G+K P + S+D +K++
Sbjct: 100 IKIKGRTIRVDHVSNYRAPQESEDVDDVTRELQEKG--CGVKTPPSSPPEVSEDEDAKLT 157
Query: 247 LVFPLCLALWVLAVTLPNRQKKIRRNRKNE-NERVRVCRMRSCSWERSKSSNKEGPEEVT 305
+ KK ++ RK E E SCS RS + ++ E +
Sbjct: 158 --------------KKHKKDKKEKKKRKKEKTEGQAQAEQPSCS--RSATVKEKKDERAS 201
Query: 306 TKGENRGKAR 315
K ++ R
Sbjct: 202 RKHSSKTSER 211
>KFC2_MOUSE (O08672) Kinesin-like protein KIFC2
Length = 792
Score = 31.6 bits (70), Expect = 2.9
Identities = 19/73 (26%), Positives = 35/73 (47%)
Query: 165 SERLVRGTEAGVPKVSIDGVVRWSVPFLTVERTAVQGWIASADGRTMGDVVEGLTFEGEI 224
SE +G E G +VS++ + FL+V+ A + + D G+V LT ++
Sbjct: 65 SEDGQKGAEGGAAEVSLEEALMRLAEFLSVQLGAEESCGTTPDLGKPGEVPPLLTVTSQL 124
Query: 225 VGIKCWSQVPHQR 237
+ + W++ P R
Sbjct: 125 LALLAWTRSPRGR 137
>ISPF_CORDI (Q6NFC2) 2-C-methyl-D-erythritol 2,4-cyclodiphosphate
synthase (EC 4.6.1.12) (MECPS) (MECDP-synthase)
Length = 160
Score = 31.6 bits (70), Expect = 2.9
Identities = 20/44 (45%), Positives = 27/44 (60%), Gaps = 4/44 (9%)
Query: 38 CVESLPS-GFGLRCGVQDLLGVSPRPCPMGPRRDSPQQVVSERL 80
C E L S GF + G L+G SP+ MGPRR+ ++V+SE L
Sbjct: 87 CRELLESHGFTIGNGAVQLVGQSPK---MGPRREEAERVMSEIL 127
>PRAX_HUMAN (Q9BXM0) Periaxin
Length = 1461
Score = 31.2 bits (69), Expect = 3.8
Identities = 17/35 (48%), Positives = 20/35 (56%), Gaps = 1/35 (2%)
Query: 16 LPCLPQQVVSEPMVGVAMVTAPCVE-SLPSGFGLR 49
LPCL +V E VGV +T P VE LP GL+
Sbjct: 834 LPCLQPEVDGEAHVGVPSLTLPSVELDLPGALGLQ 868
>FIXB_SALTY (P64095) FixB protein
Length = 313
Score = 30.4 bits (67), Expect = 6.4
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 97 VRWSVPFLTVERTAVQEHSPGNQDLEAEKLIFTRVREFAKVEIVEIDSLSYQLFEFDLRC 156
V+W P V RTA Q + DL+ +L+ + R E + + Q +L C
Sbjct: 168 VQWQAPATAVTRTATQARQSNSVDLDKARLVVSVGRGIGSKENISLAEALCQTIGAELAC 227
>FIXB_SALTI (P64096) FixB protein
Length = 313
Score = 30.4 bits (67), Expect = 6.4
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 97 VRWSVPFLTVERTAVQEHSPGNQDLEAEKLIFTRVREFAKVEIVEIDSLSYQLFEFDLRC 156
V+W P V RTA Q + DL+ +L+ + R E + + Q +L C
Sbjct: 168 VQWQAPATAVTRTATQARQSNSVDLDKARLVVSVGRGIGSKENISLAEALCQTIGAELAC 227
>CKRA_HUMAN (P46092) C-C chemokine receptor type 10 (C-C CKR-10)
(CC-CKR-10) (CCR-10) (G-protein coupled receptor 2)
Length = 362
Score = 30.4 bits (67), Expect = 6.4
Identities = 19/49 (38%), Positives = 21/49 (42%)
Query: 29 VGVAMVTAPCVESLPSGFGLRCGVQDLLGVSPRPCPMGPRRDSPQQVVS 77
V VA+V A V LP L DLL R CP R+D V S
Sbjct: 248 VVVALVAAFVVLQLPYSLALLLDTADLLAARERSCPASKRKDVALLVTS 296
>C125_MYCTU (P63709) Putative cytochrome P450 125 (EC 1.14.-.-)
Length = 433
Score = 30.0 bits (66), Expect = 8.4
Identities = 9/26 (34%), Positives = 19/26 (72%)
Query: 89 PKVSIDDVVRWSVPFLTVERTAVQEH 114
P+ + D++VRW+ P +RTA++++
Sbjct: 299 PETAADEIVRWATPVTAFQRTALRDY 324
>C125_MYCBO (P63710) Putative cytochrome P450 125 (EC 1.14.-.-)
Length = 433
Score = 30.0 bits (66), Expect = 8.4
Identities = 9/26 (34%), Positives = 19/26 (72%)
Query: 89 PKVSIDDVVRWSVPFLTVERTAVQEH 114
P+ + D++VRW+ P +RTA++++
Sbjct: 299 PETAADEIVRWATPVTAFQRTALRDY 324
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.320 0.136 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,629,756
Number of Sequences: 164201
Number of extensions: 1582059
Number of successful extensions: 3769
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3756
Number of HSP's gapped (non-prelim): 16
length of query: 331
length of database: 59,974,054
effective HSP length: 111
effective length of query: 220
effective length of database: 41,747,743
effective search space: 9184503460
effective search space used: 9184503460
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)
Lotus: description of TM0190.5