BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0189.9
(214 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei... 87 2e-17
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei... 87 2e-17
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei... 87 2e-17
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 64 2e-10
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 64 3e-10
POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.2... 62 1e-09
POL_MLVCB (P08361) Pol polyprotein [Contains: Reverse transcript... 62 1e-09
POL_MLVRK (P31795) Pol polyprotein [Contains: Protease (EC 3.4.2... 61 2e-09
POL_MLVRD (P11227) Pol polyprotein [Contains: Protease (EC 3.4.2... 61 2e-09
POL3_MOUSE (P11367) Retrovirus-related Pol polyprotein (Endonucl... 61 2e-09
POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23... 59 1e-08
POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.2... 59 1e-08
POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC 3.4.2... 57 2e-08
POL_MLVFF (P26809) Pol polyprotein [Contains: Protease (EC 3.4.2... 57 2e-08
POL_MLVF5 (P26810) Pol polyprotein [Contains: Protease (EC 3.4.2... 57 2e-08
POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.2... 55 1e-07
POL_MLVAK (P03357) Pol polyprotein [Contains: Reverse transcript... 55 1e-07
POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse transcript... 54 2e-07
POL_AVIRE (P03360) Pol polyprotein [Contains: Reverse transcript... 47 4e-05
YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II 46 6e-05
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
type 3
Length = 1333
Score = 87.4 bits (215), Expect = 2e-17
Identities = 62/204 (30%), Positives = 98/204 (47%), Gaps = 18/204 (8%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRPLSEAKGAW 60
++DN F S K+F + +FS PQT+GQ + N+ +++ L+ S W
Sbjct: 1048 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1107
Query: 61 LDELPIVFWSYNTTQHSTTGKTPFRMTYG-ADVMLPVEIDNSSWRTTPKFEGENSSNMAV 119
+D + +V SYN HS T TPF + + + + P+E+ + S +T ENS
Sbjct: 1108 VDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKT-----DENSQETIQ 1162
Query: 120 ELDLLSETHNEARLKEAAMKQRAAAKYDTKVKP-REMQEGDLVLKKRTGV----TGNKLS 174
+ E N +K MK+ +D K++ E Q GDLV+ KRT NKL+
Sbjct: 1163 VFQTVKEHLNTNNIK---MKK----YFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLA 1215
Query: 175 PIWEGPYRILKALGRGAYHLESLD 198
P + GP+ +L+ G Y L+ D
Sbjct: 1216 PSFAGPFYVLQKSGPNNYELDLPD 1239
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
type 2
Length = 1333
Score = 87.4 bits (215), Expect = 2e-17
Identities = 62/204 (30%), Positives = 98/204 (47%), Gaps = 18/204 (8%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRPLSEAKGAW 60
++DN F S K+F + +FS PQT+GQ + N+ +++ L+ S W
Sbjct: 1048 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1107
Query: 61 LDELPIVFWSYNTTQHSTTGKTPFRMTYG-ADVMLPVEIDNSSWRTTPKFEGENSSNMAV 119
+D + +V SYN HS T TPF + + + + P+E+ + S +T ENS
Sbjct: 1108 VDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKT-----DENSQETIQ 1162
Query: 120 ELDLLSETHNEARLKEAAMKQRAAAKYDTKVKP-REMQEGDLVLKKRTGV----TGNKLS 174
+ E N +K MK+ +D K++ E Q GDLV+ KRT NKL+
Sbjct: 1163 VFQTVKEHLNTNNIK---MKK----YFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLA 1215
Query: 175 PIWEGPYRILKALGRGAYHLESLD 198
P + GP+ +L+ G Y L+ D
Sbjct: 1216 PSFAGPFYVLQKSGPNNYELDLPD 1239
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
type 1
Length = 1333
Score = 87.4 bits (215), Expect = 2e-17
Identities = 62/204 (30%), Positives = 98/204 (47%), Gaps = 18/204 (8%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRPLSEAKGAW 60
++DN F S K+F + +FS PQT+GQ + N+ +++ L+ S W
Sbjct: 1048 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1107
Query: 61 LDELPIVFWSYNTTQHSTTGKTPFRMTYG-ADVMLPVEIDNSSWRTTPKFEGENSSNMAV 119
+D + +V SYN HS T TPF + + + + P+E+ + S +T ENS
Sbjct: 1108 VDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKT-----DENSQETIQ 1162
Query: 120 ELDLLSETHNEARLKEAAMKQRAAAKYDTKVKP-REMQEGDLVLKKRTGV----TGNKLS 174
+ E N +K MK+ +D K++ E Q GDLV+ KRT NKL+
Sbjct: 1163 VFQTVKEHLNTNNIK---MKK----YFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLA 1215
Query: 175 PIWEGPYRILKALGRGAYHLESLD 198
P + GP+ +L+ G Y L+ D
Sbjct: 1216 PSFAGPFYVLQKSGPNNYELDLPD 1239
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 64.3 bits (155), Expect = 2e-10
Identities = 56/212 (26%), Positives = 96/212 (44%), Gaps = 19/212 (8%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRPLSEAKGAW 60
++D G +F + +F + I+ + + + NG + NK I +K+ + W
Sbjct: 1599 LTDQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANGAVERFNKTIMHIMKKKTAVPM-EW 1657
Query: 61 LDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGENSSNMAVE 120
D++ ++YN H TG+TP + +G DVM P+E+ G N ++M
Sbjct: 1658 DDQVVYAVYAYNNCVHENTGETPMFLMHGRDVMGPLEMSGED------AVGINYADMDEY 1711
Query: 121 LDLLSETHNEAR--LKEAAMKQRAAAK--YDTKV---KPREMQEGDLVL----KKRTGVT 169
LL++ + + KE AM+++ + K +D K K R Q G VL ++ G
Sbjct: 1712 KHLLTQELLKVQKIAKEHAMREQESYKSLFDQKYASKKHRFPQPGSRVLLEIPSEKLGAQ 1771
Query: 170 GNKLSPIWEGPYRILKALGRGAYHLESLDGKR 201
KL W GPYR++ A + + GKR
Sbjct: 1772 CPKLVNKWSGPYRVISCSENSA-EITPVLGKR 1802
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 63.5 bits (153), Expect = 3e-10
Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 7/184 (3%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRPLSEAKGAW 60
++D G ++ ++ + C+ + I+ S+ H QT G + +++ + + ++ +S K W
Sbjct: 1029 ITDMGTEYKNSIITDLCKYLKIKNITSTAHHHQTVGVVERSHRTLNEYIRSYISTDKTDW 1088
Query: 61 LDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGENSSNMAVE 120
L + +NTTQ P+ + +G LP N P + N + A E
Sbjct: 1089 DVWLQYFVYCFNTTQSMVHNYCPYELVFGRTSNLPKHF-NKLHSIEPIY---NIDDYAKE 1144
Query: 121 LDL-LSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVLKKRTGVTGNKLSPIWEG 179
L + AR A K++ YD KVK E++ GD VL + G+KL + G
Sbjct: 1145 SKYRLEVAYARARKLLEAHKEKNKENYDLKVKDIELEVGDKVLLRNE--VGHKLDFKYTG 1202
Query: 180 PYRI 183
PY+I
Sbjct: 1203 PYKI 1206
>POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1199
Score = 62.0 bits (149), Expect = 1e-09
Identities = 52/184 (28%), Positives = 78/184 (42%), Gaps = 13/184 (7%)
Query: 2 SDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGL-KRPLSEAKGAW 60
+DNG F S ++ + +GI + PQ++GQ + N+ I++ L K L+ W
Sbjct: 974 TDNGPAFVSKVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDW 1033
Query: 61 LDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGENSSNMAVE 120
+ LP+ + T G TP+ + YGA L D R T NS ++
Sbjct: 1034 VLLLPLALYRARNTP-GPHGLTPYEILYGAPPPLVNFPDPDMTRVT------NSPSLQAH 1086
Query: 121 LDLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVLKKRTGVTGNKLSPIWEGP 180
L L +E AA Q + D V P + GD V +R L P W+GP
Sbjct: 1087 LQALYLVQHEVWRPLAAAYQE---QLDRPVVPHPYRVGDTVWVRRHQT--KNLEPRWKGP 1141
Query: 181 YRIL 184
Y +L
Sbjct: 1142 YTVL 1145
>POL_MLVCB (P08361) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 282
Score = 62.0 bits (149), Expect = 1e-09
Identities = 52/184 (28%), Positives = 78/184 (42%), Gaps = 13/184 (7%)
Query: 2 SDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGL-KRPLSEAKGAW 60
+DNG F S ++ + +GI + PQ++GQ + N+ I++ L K L+ W
Sbjct: 60 TDNGPAFVSKVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDW 119
Query: 61 LDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGENSSNMAVE 120
+ LP+ + T G TP+ + YGA L D R T NS ++
Sbjct: 120 VLLLPLALYRARNTP-GPHGLTPYEILYGAPPPLVNFPDPDMTRVT------NSPSLQAH 172
Query: 121 LDLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVLKKRTGVTGNKLSPIWEGP 180
L L +E AA Q + D V P + GD V +R L P W+GP
Sbjct: 173 LQALYLVQHEVWRPLAAAYQE---QLDRPVVPHPYRVGDTVWVRRHQT--KNLEPRWKGP 227
Query: 181 YRIL 184
Y +L
Sbjct: 228 YTVL 231
>POL_MLVRK (P31795) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] (Fragment)
Length = 581
Score = 60.8 bits (146), Expect = 2e-09
Identities = 52/184 (28%), Positives = 78/184 (42%), Gaps = 13/184 (7%)
Query: 2 SDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGL-KRPLSEAKGAW 60
+DNG F S ++ + +GI + PQ++GQ + N+ I++ L K L+ W
Sbjct: 359 TDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGTRDW 418
Query: 61 LDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGENSSNMAVE 120
+ LP+ + T G TP+ + YGA P + N KF NS ++
Sbjct: 419 VLLLPLALYRARNTP-GPHGLTPYEILYGA----PPPLVNFHDPEMSKF--TNSPSLQAH 471
Query: 121 LDLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVLKKRTGVTGNKLSPIWEGP 180
L L E AA Q + D V P + GD V +R L P W+GP
Sbjct: 472 LQALQAVQREVWKPLAAAYQ---DQLDQPVIPHPFRVGDTVWVRRHQT--KNLEPRWKGP 526
Query: 181 YRIL 184
Y +L
Sbjct: 527 YTVL 530
>POL_MLVRD (P11227) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1196
Score = 60.8 bits (146), Expect = 2e-09
Identities = 52/184 (28%), Positives = 78/184 (42%), Gaps = 13/184 (7%)
Query: 2 SDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGL-KRPLSEAKGAW 60
+DNG F S ++ + +GI + PQ++GQ + N+ I++ L K L+ W
Sbjct: 974 TDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGTRDW 1033
Query: 61 LDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGENSSNMAVE 120
+ LP+ + T G TP+ + YGA P + N KF NS ++
Sbjct: 1034 VLLLPLALYRARNTP-GPHGLTPYEILYGA----PPPLVNFHDPEMSKF--TNSPSLQAH 1086
Query: 121 LDLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVLKKRTGVTGNKLSPIWEGP 180
L L E AA Q + D V P + GD V +R L P W+GP
Sbjct: 1087 LQALQAVQREVWKPLAAAYQ---DQLDQPVIPHPFRVGDTVWVRRHQT--KNLEPRWKGP 1141
Query: 181 YRIL 184
Y +L
Sbjct: 1142 YTVL 1145
>POL3_MOUSE (P11367) Retrovirus-related Pol polyprotein
(Endonuclease) (Fragment)
Length = 390
Score = 60.8 bits (146), Expect = 2e-09
Identities = 52/184 (28%), Positives = 78/184 (42%), Gaps = 13/184 (7%)
Query: 2 SDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGL-KRPLSEAKGAW 60
+DNG F S ++ + +GI + PQ++GQ + N+ I++ L K L+ W
Sbjct: 183 TDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGTRDW 242
Query: 61 LDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGENSSNMAVE 120
+ LP+ + T G TP+ + YGA P + N KF NS ++
Sbjct: 243 VLLLPLALYRARNTP-GPHGLTPYEILYGA----PPPLVNFHDPEMSKF--TNSPSLQAH 295
Query: 121 LDLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVLKKRTGVTGNKLSPIWEGP 180
L L E AA Q + D V P + GD V +R L P W+GP
Sbjct: 296 LQALQAVQREVWKPLAAAYQ---DQLDQPVIPHPFRVGDTVWVRRHQT--KNLEPRWKGP 350
Query: 181 YRIL 184
Y +L
Sbjct: 351 YTVL 354
>POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1161
Score = 58.5 bits (140), Expect = 1e-08
Identities = 30/94 (31%), Positives = 50/94 (52%)
Query: 2 SDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRPLSEAKGAWL 61
SD G F S+ ++ +E GIQ FS+ HPQ++G+ + N I++ L + L W
Sbjct: 946 SDQGAAFTSSTFADWAKEKGIQLEFSTPYHPQSSGKVERKNSDIKRLLTKLLIGRPAKWY 1005
Query: 62 DELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLP 95
D LP+V + N + ++ TP ++ +G D P
Sbjct: 1006 DLLPVVQLALNNSYSPSSKYTPHQLLFGVDSNTP 1039
>POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1196
Score = 58.5 bits (140), Expect = 1e-08
Identities = 52/186 (27%), Positives = 77/186 (40%), Gaps = 17/186 (9%)
Query: 2 SDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGL-KRPLSEAKGAW 60
SDNG F S ++ + +GI + PQ++GQ + N+ I++ L K L+ W
Sbjct: 974 SDNGPAFTSQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLAAGTRDW 1033
Query: 61 LDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGENSSNMAVE 120
+ LP+ + T G TP+ + YGA L ++ E NS ++
Sbjct: 1034 VLLLPLALYRARNTP-GPHGLTPYEILYGAPPPL------VNFHDPDMSELTNSPSLQAH 1086
Query: 121 LDLLSETHNE--ARLKEAAMKQRAAAKYDTKVKPREMQEGDLVLKKRTGVTGNKLSPIWE 178
L L E L EA Q D V P + GD V +R L P W+
Sbjct: 1087 LQALQTVQREIWKPLAEAYRDQ-----LDQPVIPHPFRIGDSVWVRRHQT--KNLEPRWK 1139
Query: 179 GPYRIL 184
GPY +L
Sbjct: 1140 GPYTVL 1145
>POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 57.4 bits (137), Expect = 2e-08
Identities = 48/184 (26%), Positives = 78/184 (42%), Gaps = 13/184 (7%)
Query: 2 SDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGL-KRPLSEAKGAW 60
+DNG F S ++ + +G+ + PQ++GQ + N+ I++ L K L+ W
Sbjct: 979 TDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDW 1038
Query: 61 LDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGENSSNMAVE 120
+ LP+ + T G TP+ + YGA L D + T ++ ++
Sbjct: 1039 VLLLPLALYRARNTP-GPHGLTPYEILYGAPPPLVNFPDPDMAKVT------HNPSLQAH 1091
Query: 121 LDLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVLKKRTGVTGNKLSPIWEGP 180
L L +E AA Q + D V P + GD V +R L P W+GP
Sbjct: 1092 LQALYLVQHEVWRPLAAAYQE---QLDRPVVPHPFRVGDTVWVRRHQT--KNLEPRWKGP 1146
Query: 181 YRIL 184
Y +L
Sbjct: 1147 YTVL 1150
>POL_MLVFF (P26809) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 57.4 bits (137), Expect = 2e-08
Identities = 48/184 (26%), Positives = 78/184 (42%), Gaps = 13/184 (7%)
Query: 2 SDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGL-KRPLSEAKGAW 60
+DNG F S ++ + +G+ + PQ++GQ + N+ I++ L K L+ W
Sbjct: 979 TDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDW 1038
Query: 61 LDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGENSSNMAVE 120
+ LP+ + T G TP+ + YGA L D + T ++ ++
Sbjct: 1039 VLLLPLALYRARNTP-GPHGLTPYEILYGAPPPLVNFPDPDMAKVT------HNPSLQAH 1091
Query: 121 LDLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVLKKRTGVTGNKLSPIWEGP 180
L L +E AA Q + D V P + GD V +R L P W+GP
Sbjct: 1092 LQALYLVQHEVWRPLAAAYQE---QLDRPVVPHPFRVGDTVWVRRHQT--KNLEPRWKGP 1146
Query: 181 YRIL 184
Y +L
Sbjct: 1147 YTVL 1150
>POL_MLVF5 (P26810) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 57.4 bits (137), Expect = 2e-08
Identities = 48/184 (26%), Positives = 78/184 (42%), Gaps = 13/184 (7%)
Query: 2 SDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGL-KRPLSEAKGAW 60
+DNG F S ++ + +G+ + PQ++GQ + N+ I++ L K L+ W
Sbjct: 979 TDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDW 1038
Query: 61 LDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGENSSNMAVE 120
+ LP+ + T G TP+ + YGA L D + T ++ ++
Sbjct: 1039 VLLLPLALYRARNTP-GPHGLTPYEILYGAPPPLVNFPDPDMAKVT------HNPSLQAH 1091
Query: 121 LDLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVLKKRTGVTGNKLSPIWEGP 180
L L +E AA Q + D V P + GD V +R L P W+GP
Sbjct: 1092 LQALYLVQHEVWRPLAAAYQE---QLDRPVVPHPFRVGDTVWVRRHQT--KNLEPRWKGP 1146
Query: 181 YRIL 184
Y +L
Sbjct: 1147 YTVL 1150
>POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1157
Score = 55.1 bits (131), Expect = 1e-07
Identities = 29/94 (30%), Positives = 48/94 (50%)
Query: 2 SDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRPLSEAKGAWL 61
SD G F S ++ + GIQ FS+ HPQ++G+ + N I++ L + L W
Sbjct: 948 SDQGAAFTSATFADWAKNKGIQLEFSTPYHPQSSGKVERKNSDIKRLLTKLLVGRPAKWY 1007
Query: 62 DELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLP 95
D LP+V + N + ++ TP ++ +G D P
Sbjct: 1008 DLLPVVQLALNNSYSPSSKYTPHQLLFGIDSNTP 1041
>POL_MLVAK (P03357) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 843
Score = 55.1 bits (131), Expect = 1e-07
Identities = 52/186 (27%), Positives = 78/186 (40%), Gaps = 18/186 (9%)
Query: 2 SDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGL-KRPLSEAKGAW 60
SDNG F S ++ + +GI + + PQ++GQ + N+ I++ L K L+ W
Sbjct: 622 SDNGPAFTSQVSQSVADLLGIDKLHCAYR-PQSSGQVERMNRTIKETLTKLTLAAGTRDW 680
Query: 61 LDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGENSSNMAVE 120
+ LP+ + T G TP+ + YGA L ++ E NS ++
Sbjct: 681 VLLLPLALYRARNTP-GPHGLTPYEILYGAPPPLV------NFHDPDMSELTNSPSLQAH 733
Query: 121 LDLLSETHNEA--RLKEAAMKQRAAAKYDTKVKPREMQEGDLVLKKRTGVTGNKLSPIWE 178
L L E L EA Q D V P + GD V +R L P W+
Sbjct: 734 LQALQTVQREIWKPLAEAYRDQ-----LDQPVIPHPFRIGDSVWVRRHQT--KNLEPRWK 786
Query: 179 GPYRIL 184
GPY +L
Sbjct: 787 GPYTVL 792
>POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)]
Length = 886
Score = 54.3 bits (129), Expect = 2e-07
Identities = 30/94 (31%), Positives = 45/94 (46%)
Query: 2 SDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRPLSEAKGAWL 61
SD G F S+ E+ +E GI FS+ HPQ+ + + N I++ L + L W
Sbjct: 738 SDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSGSKVERKNSDIKRLLTKLLVGRPTKWY 797
Query: 62 DELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLP 95
D LP+V + N T TP ++ +G D P
Sbjct: 798 DLLPVVQLALNNTYSPVLKYTPHQLLFGIDSNTP 831
>POL_AVIRE (P03360) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 473
Score = 46.6 bits (109), Expect = 4e-05
Identities = 39/183 (21%), Positives = 72/183 (39%), Gaps = 12/183 (6%)
Query: 2 SDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRPLSEAKGAWL 61
SDNG F + T++ CE + + + PQ++GQ + N+ +++ + + L + L
Sbjct: 253 SDNGPAFVAKVTQQLCEALNVSWKLHCAYRPQSSGQVERMNRTLKKAIAK-LEDRDRRGL 311
Query: 62 DELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGENSSNMAVEL 121
P ++ T G +PF + YG + + K + + L
Sbjct: 312 GLPPPSGFAPGTVYPGREGLSPFEILYGLKPPVVPRVG------CDKLASITNQTLLKSL 365
Query: 122 DLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVLKKRTGVTGNKLSPIWEGPY 181
L T + AR AA + A + + P K+ +L P W+GPY
Sbjct: 366 QALQATRSLAR---AAARPTAPERSSARPYPTVPNLVTSFFVKKHDF--QQLGPRWDGPY 420
Query: 182 RIL 184
++
Sbjct: 421 TVV 423
>YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II
Length = 1268
Score = 46.2 bits (108), Expect = 6e-05
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRPLSEAKGAW 60
+SDNG Q S+ + C+ GI+ + S+V +P++NG A+ LKR +++ KG
Sbjct: 907 ISDNGTQLTSHLFAQMCQSHGIEHKTSAVYYPRSNGAAER----FVDTLKRGIAKIKGEG 962
Query: 61 LDELPIV---FWSYNTTQHST-TGKTPFRMTYGADV 92
I+ SY T HS G TP +G +
Sbjct: 963 SVNQQILNKFLISYRNTPHSALNGSTPAECHFGRKI 998
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.317 0.131 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,629,286
Number of Sequences: 164201
Number of extensions: 981698
Number of successful extensions: 2602
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 2490
Number of HSP's gapped (non-prelim): 112
length of query: 214
length of database: 59,974,054
effective HSP length: 106
effective length of query: 108
effective length of database: 42,568,748
effective search space: 4597424784
effective search space used: 4597424784
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Lotus: description of TM0189.9