BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0180a.7
         (199 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

SIN3_YEAST (P22579) Paired amphipathic helix protein SIN3              31  1.6
Y346_CHLPN (Q9Z8J7) Probable metal transport system membrane pro...    30  2.8
WHIT_CERCA (Q17320) White protein                                      29  8.2

>SIN3_YEAST (P22579) Paired amphipathic helix protein SIN3
          Length = 1536

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 16/60 (26%), Positives = 27/60 (44%), Gaps = 4/60 (6%)

Query: 4   SPQPLRNGADGGDNNNNHRSSSPRFHSTMAEHKLRRFNSLILVFRLISFSFSLASSVFML 63
           +P P  N AD  D+NNN+ +S    H   A+++       +     + F FS    ++ L
Sbjct: 189 APDPSSNHADANDDNNNNENS----HDEDADYRPLNVKDALSYLEQVKFQFSSRPDIYNL 244


>Y346_CHLPN (Q9Z8J7) Probable metal transport system membrane
           protein CPn0346/CP0414/CPj0346/CpB0353
          Length = 324

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 23/77 (29%), Positives = 36/77 (45%), Gaps = 9/77 (11%)

Query: 36  KLRRFNSLILVFRLISFSFSLASSVFMLTNTH--------GSDSPHWYHYDTFRFVLAAN 87
           K+   +S  LVF L+ FS SL   VFM  N H         +DS           V+ AN
Sbjct: 119 KVSEESSTALVFSLL-FSLSLVLLVFMTKNAHIGTELVLGNADSLTKEDIFPVTIVILAN 177

Query: 88  AIVAVYSLFEMVASVWE 104
           A++ +++   +V S ++
Sbjct: 178 AVITIFAFRSLVCSSFD 194


>WHIT_CERCA (Q17320) White protein
          Length = 679

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 6/47 (12%)

Query: 151 TCTASNAFCVQSD--IAVALGYAG----FVFLGFTSLLTGFRVVCFI 191
           TCT SN  C  S   I   L ++     F F+G   L+ GFR+  +I
Sbjct: 623 TCTLSNTTCPSSGEVILETLNFSASDLPFDFIGLALLIVGFRISAYI 669


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.328    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,427,059
Number of Sequences: 164201
Number of extensions: 745389
Number of successful extensions: 2429
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2429
Number of HSP's gapped (non-prelim): 3
length of query: 199
length of database: 59,974,054
effective HSP length: 105
effective length of query: 94
effective length of database: 42,732,949
effective search space: 4016897206
effective search space used: 4016897206
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 63 (28.9 bits)