BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0180a.4
         (342 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

GARP_PLAFF (P13816) Glutamic acid-rich protein precursor               45  3e-04
SPT5_YEAST (P27692) Transcription initiation protein SPT5              42  0.002
CYL1_BOVIN (P35662) Cylicin I (Multiple-band polypeptide I)            40  0.011
NUCL_MESAU (P08199) Nucleolin (Protein C23)                            39  0.014
SLU7_YEAST (Q02775) Pre-mRNA splicing factor SLU7                      39  0.019
RMP_HUMAN (O94763) RNA polymerase II subunit 5-mediating protein...    39  0.019
NCAP_RINDR (Q03332) Nucleocapsid protein                               39  0.025
SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calciu...    38  0.042
NOP5_YEAST (Q12499) Nucleolar protein NOP58 (Nucleolar protein N...    38  0.042
T2FA_XENLA (Q04870) Transcription initiation factor IIF, alpha s...    37  0.055
Y124_METJA (Q57588) Hypothetical protein MJ0124                        37  0.072
SYS_RICCN (Q92GA7) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--...    37  0.094
SPT7_YEAST (P35177) Transcriptional activator SPT7                     37  0.094
FKB3_YEAST (P38911) FK506-binding nuclear protein (EC 5.2.1.8) (...    37  0.094
YP58_YEAST (Q99299) Hypothetical protein YPL158C                       36  0.12
NUCL_HUMAN (P19338) Nucleolin (Protein C23)                            36  0.12
YE06_SCHPO (O13803) Hypothetical protein C17H9.06c in chromosome I     36  0.16
NAB3_YEAST (P38996) Nuclear polyadenylated RNA-binding protein 3       36  0.16
IF38_CAEEL (O02328) Probable eukaryotic translation initiation f...    36  0.16
DAXX_MOUSE (O35613) Death domain-associated protein 6 (Daxx)           36  0.16

>GARP_PLAFF (P13816) Glutamic acid-rich protein precursor
          Length = 678

 Score = 45.1 bits (105), Expect = 3e-04
 Identities = 43/186 (23%), Positives = 82/186 (43%), Gaps = 19/186 (10%)

Query: 37  DKPRKQFLNLSLSSNLSLLVGD-SKAPRRVQALKSDGAHRKSGK-REASSDSDSDSDDEN 94
           DK + +  NLS+   L   +G  +  PRR      D   +K  K  EA        D E 
Sbjct: 496 DKSKVEEKNLSIQEQLIGTIGRVNVVPRR------DNHKKKMAKIEEAELQKQKHVDKEE 549

Query: 95  DAPPPINDPYLMTLEERQEWRRKIRQVMDMKPNVQEESDPEEKKKKMEKLMKDYPLVVDE 154
           D             EE +E + + ++V + +  V+E+ + EE++++ E+  ++     +E
Sbjct: 550 DKK-----------EESKEVQEESKEVQEDEEEVEEDEEEEEEEEEEEEEEEEEEEEEEE 598

Query: 155 EDPNWPEDADGWGFSLGQFFNKITIKDNKKAKDDDDDDDEGNKVVWQDDDYIRPIKDIKS 214
           E+    ED D       +       +D   A++DDD++D+  +   +D+D     ++ + 
Sbjct: 599 EEEEEEEDEDEEDEDDAEEDEDDAEEDEDDAEEDDDEEDDDEEDDDEDEDEDEEDEEEEE 658

Query: 215 SEWEET 220
            E EE+
Sbjct: 659 EEEEES 664


>SPT5_YEAST (P27692) Transcription initiation protein SPT5
          Length = 1063

 Score = 42.4 bits (98), Expect = 0.002
 Identities = 31/132 (23%), Positives = 57/132 (42%), Gaps = 11/132 (8%)

Query: 58  DSKAPRRVQALKSDGAHRKSGKREASSDSDSDSDDENDAPPPINDPYLMTLEERQEWRRK 117
           + K PR      SDG  +  G  +   D + D DD++D     +D    T   RQE  R 
Sbjct: 124 ERKRPREEDTKNSDGDTKDEGDNKDEDDDEDDDDDDDDED---DDDEAPTKRRRQERNR- 179

Query: 118 IRQVMDMKPNVQEESDPEEKKKKMEKLMKDYPLVVDEEDPNWPEDADGWGFSLGQFFNKI 177
               +D++  V ++ D +E ++  E + + +    D+ED    ++A   G       ++ 
Sbjct: 180 ---FLDIEAEVSDDEDEDEDEEDSELVREGFITHGDDED----DEASAPGARRDDRLHRQ 232

Query: 178 TIKDNKKAKDDD 189
             +D  K  ++D
Sbjct: 233 LDQDLNKTSEED 244


>CYL1_BOVIN (P35662) Cylicin I (Multiple-band polypeptide I)
          Length = 667

 Score = 39.7 bits (91), Expect = 0.011
 Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 15/150 (10%)

Query: 57  GDSKAPRRVQALKSDGAHRKSGKREASSD--SDSDSDDENDAPPPINDPYLMTLEERQEW 114
           GDSK      A K     +K  K++A  D  SD++S D  DA     D      + +++ 
Sbjct: 333 GDSK-----DAKKGKKESKKDKKKDAKKDAASDAESGDSKDAK---KDSKKGKKDSKKDN 384

Query: 115 RRKIRQVMDMKPNVQEESDPEEKKKKMEKLMKDYPLVVDEEDPNWPEDADGWGFSLGQFF 174
           ++K  +  D +    E  D ++ KK  +K  KD     D++  +  +DA+      G   
Sbjct: 385 KKKDAK-KDAESTDAESGDSKDAKKDSKKGKKDSKK--DDKKKDAKKDAESTDAESGD-- 439

Query: 175 NKITIKDNKKAKDDDDDDDEGNKVVWQDDD 204
           +K   KD+KK K DD   D     V  D D
Sbjct: 440 SKNAKKDSKKGKKDDKKKDAKKDAVSTDAD 469


>NUCL_MESAU (P08199) Nucleolin (Protein C23)
          Length = 713

 Score = 39.3 bits (90), Expect = 0.014
 Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 17/152 (11%)

Query: 76  KSGKREASSDSDSDSDDENDAPPPINDPYLMTLEERQEW-----RRKIRQVMDMKPNVQE 130
           K+GK     DSD D DD++D      D      EE  E+     + K  +V    P  ++
Sbjct: 133 KNGKNAKKEDSDEDEDDDDDEDDSDEDE---EDEEEDEFEPPVVKGKQGKVAAAAPASED 189

Query: 131 ESDPEEKKKKMEKLMKDYPLVVDEEDPNWPEDADGWGFSLGQFF-NKITIKDNKKAKDDD 189
           E + E+++++ E          +EED +  E+A     + G+    K+     K   ++D
Sbjct: 190 EDEEEDEEEEEED--------EEEEDDSEEEEAMEITPAKGKKAPAKVVPVKAKNVAEED 241

Query: 190 DDDDEGNKVVWQDDDYIRPIKDIKSSEWEETV 221
           DDD+E ++   +D++     ++ +  E EE V
Sbjct: 242 DDDEEEDEDEEEDEEEEEDEEEEEEEEEEEPV 273


>SLU7_YEAST (Q02775) Pre-mRNA splicing factor SLU7
          Length = 382

 Score = 38.9 bits (89), Expect = 0.019
 Identities = 42/187 (22%), Positives = 76/187 (40%), Gaps = 21/187 (11%)

Query: 35  HKDKPRKQFLNLSLSSNLSLLVGDSKAPRRVQALKSDGAHRKSGKREASSDSDSDSDDEN 94
           +KD P++Q      + + S   G  K+   V        HR+  K  A    D D++ E 
Sbjct: 44  YKDTPKEQEGKKPGNDDTSTAEGGEKSDYLVH-------HRQKAKGGAL---DIDNNSEP 93

Query: 95  DAPPPINDPYLMTLEERQEWR--RKIRQVMDMKPNVQEESDPEEKKKKMEKLMKDY---- 148
                I D + +   ++   R    +    +      +E D  EK +KM+KL+ D     
Sbjct: 94  KIGMGIKDEFKLIRPQKMSVRDSHSLSFCRNCGEAGHKEKDCMEKPRKMQKLVPDLNSQK 153

Query: 149 ---PLVVDEEDPNWPEDADGWGFSLGQFFNKITIK--DNKKAKDDDDDDDEGNKVVWQDD 203
               ++V   D +W    D W    G+ +N++  K   +K+ K    D  + ++ +W  D
Sbjct: 154 NNGTVLVRATDDDWDSRKDRWYGYSGKEYNELISKWERDKRNKIKGKDKSQTDETLWDTD 213

Query: 204 DYIRPIK 210
           + I  +K
Sbjct: 214 EEIELMK 220


>RMP_HUMAN (O94763) RNA polymerase II subunit 5-mediating protein
           (RPB5-mediating protein)
          Length = 508

 Score = 38.9 bits (89), Expect = 0.019
 Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 9/140 (6%)

Query: 73  AHRKSGKREASSDSDSDSDDENDAPPPINDPYLMTLEERQEWRRKIRQVMDMKP-----N 127
           AH+   K + S   ++D  ++  +   + D  L    E  E + ++   +D KP     N
Sbjct: 152 AHKPHSKPKTSDIFEADIANDVKSKDLLADKELWARLEELERQEELLGELDSKPDTVIAN 211

Query: 128 VQEESDPEEKKKKMEKLMKDYPLVVDEEDPNWPEDADGWGFSLGQFFNKITIKDNKKAK- 186
            ++ +  EE+K+     +     V D   P   + A    FS GQ  +++    N  +  
Sbjct: 212 GEDTTSSEEEKEDRNTNVNAMHQVTDSHTPCHKDVASSEPFS-GQVNSQLNCSVNGSSSY 270

Query: 187 --DDDDDDDEGNKVVWQDDD 204
             DDDDDDD+ +     DDD
Sbjct: 271 HSDDDDDDDDDDDDNIDDDD 290


>NCAP_RINDR (Q03332) Nucleocapsid protein
          Length = 525

 Score = 38.5 bits (88), Expect = 0.025
 Identities = 33/136 (24%), Positives = 56/136 (40%), Gaps = 15/136 (11%)

Query: 11  SSSLSSPIGVKERNFNMPTSYCCLHKDKPRKQFLNLSLSSNLSLLVGDSKAPRRVQALKS 70
           SS+L+S +G+ E    + +       D  R    +    + +S L  D  +  +  A K 
Sbjct: 377 SSNLASELGITEEEARLVSEIAAYTSDD-RNNRTSGPKQAQVSFLRTDQGSEAQHSASKK 435

Query: 71  DGAHRKSGKREASSDSDSDSDDENDAPPPINDPYLMTLEERQEWRRKIRQVMDMKPNVQE 130
           D A     K+E  + S SD   E     P++    MTL             +D+   ++ 
Sbjct: 436 DEARAPQVKKETRTSSKSDKHKEGTDKEPVSSS-AMTL-------------IDVDTTLEA 481

Query: 131 ESDPEEKKKKMEKLMK 146
           ++DP E KK  E L++
Sbjct: 482 DTDPLESKKSAEALLR 497


>SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich
           calcium-binding protein precursor
          Length = 852

 Score = 37.7 bits (86), Expect = 0.042
 Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 17/124 (13%)

Query: 73  AHRKSGKREASSDSDSDSDDENDAPPPINDPYLMTLEERQEWRRKIRQVMDMKPNVQEES 132
           AHR  G RE   + + D DDE D+            +  Q  R +  +  + + +  +E 
Sbjct: 224 AHRHRGHRE--EEDEDDDDDEGDSTES---------DHHQAHRHRGHEEEEDEEDDDDEG 272

Query: 133 DPEEKKKKMEKLMKDYPLVVDEEDPNWPEDADGWGFSLGQFFNKITIKDNKKAKDDDDDD 192
           D  E  +      + +    +EED +  ++ D       Q       + +++ +DDDDDD
Sbjct: 273 DSTESDRHQAHRHRGHR---EEEDEDDDDEGDSTESDRHQAHRH---RGHREEEDDDDDD 326

Query: 193 DEGN 196
           DEG+
Sbjct: 327 DEGD 330



 Score = 36.2 bits (82), Expect = 0.12
 Identities = 38/140 (27%), Positives = 56/140 (39%), Gaps = 25/140 (17%)

Query: 57  GDSKAPRRVQALKSDGAHRKSGKREASSDSDSDSDDENDAPPPINDPYLMTLEERQEWRR 116
           GDS    R QA      HR  G RE   + D D DDE D+          T  +R +  R
Sbjct: 300 GDSTESDRHQA------HRHRGHRE--EEDDDDDDDEGDS----------TESDRHQAHR 341

Query: 117 KIRQVMDMKPNVQEESDPEEKKKKMEKLMKDYPLVVDEEDPNWPEDADGWGFSLGQFFNK 176
                 +   +  +E D  E  +      + +    +EED    ED D  G S     ++
Sbjct: 342 HRGHREEEDEDDDDEGDSTESDRHQAHRHRGHR---EEED----EDDDDEGDSTESDRHQ 394

Query: 177 ITIKDNKKAKDDDDDDDEGN 196
                  + ++D+DDDDEG+
Sbjct: 395 AHRHRGHREEEDEDDDDEGD 414



 Score = 35.0 bits (79), Expect = 0.27
 Identities = 37/140 (26%), Positives = 56/140 (39%), Gaps = 26/140 (18%)

Query: 57  GDSKAPRRVQALKSDGAHRKSGKREASSDSDSDSDDENDAPPPINDPYLMTLEERQEWRR 116
           GDS    R QA      HR  G RE   + D D DDE D+          T  +R +  R
Sbjct: 329 GDSTESDRHQA------HRHRGHRE---EEDEDDDDEGDS----------TESDRHQAHR 369

Query: 117 KIRQVMDMKPNVQEESDPEEKKKKMEKLMKDYPLVVDEEDPNWPEDADGWGFSLGQFFNK 176
                 +   +  +E D  E  +      + +    +EED    ED D  G S     ++
Sbjct: 370 HRGHREEEDEDDDDEGDSTESDRHQAHRHRGHR---EEED----EDDDDEGDSTESDHHQ 422

Query: 177 ITIKDNKKAKDDDDDDDEGN 196
                  + ++D++DDDEG+
Sbjct: 423 AHRHRGHREEEDEEDDDEGD 442



 Score = 32.3 bits (72), Expect = 1.8
 Identities = 37/139 (26%), Positives = 51/139 (36%), Gaps = 26/139 (18%)

Query: 57  GDSKAPRRVQALKSDGAHRKSGKREASSDSDSDSDDENDAPPPINDPYLMTLEERQEWRR 116
           GDS    R QA      HR  G RE   + D D DDE D+          T  +R +  R
Sbjct: 357 GDSTESDRHQA------HRHRGHRE---EEDEDDDDEGDS----------TESDRHQAHR 397

Query: 117 KIRQVMDMKPNVQEESDPEEKKKKMEKLMKDYPLVVDEEDPNWPEDADGWGFSLGQFFNK 176
                 +   +  +E D  E         + +    DEED       D  G S     ++
Sbjct: 398 HRGHREEEDEDDDDEGDSTESDHHQAHRHRGHREEEDEED-------DDEGDSTESDRHQ 450

Query: 177 ITIKDNKKAKDDDDDDDEG 195
                    ++D+DDDDEG
Sbjct: 451 AHRHRGHGEEEDEDDDDEG 469


>NOP5_YEAST (Q12499) Nucleolar protein NOP58 (Nucleolar protein
           NOP5)
          Length = 511

 Score = 37.7 bits (86), Expect = 0.042
 Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 11/84 (13%)

Query: 63  RRVQALKSDGAHRKSGKREASSDSDSDSDDENDAPPPINDPYLMTLEERQEWRRKIRQVM 122
           ++V+  ++   +  +   +A+SDS+SDSDDE +             +E++E +RK     
Sbjct: 417 KKVEMTEARAYNADADTAKAASDSESDSDDEEEEK-----------KEKKEKKRKRDDDE 465

Query: 123 DMKPNVQEESDPEEKKKKMEKLMK 146
           D K + + + + ++KK+K EK  K
Sbjct: 466 DSKDSKKAKKEKKDKKEKKEKKEK 489


>T2FA_XENLA (Q04870) Transcription initiation factor IIF, alpha
           subunit (EC 2.7.1.37) (TFIIF-alpha) (Transcription
           initiation factor RAP74)
          Length = 524

 Score = 37.4 bits (85), Expect = 0.055
 Identities = 40/136 (29%), Positives = 56/136 (40%), Gaps = 30/136 (22%)

Query: 99  PINDPYLMTLEE-RQEWRRK--------IRQVMDMKPNVQEESDPEE-----------KK 138
           P+     +T EE  QEW R+        I Q   +K  V +E + EE           KK
Sbjct: 148 PVAKHRTLTAEEAEQEWERRNKVLNHFTIMQQRRLKDQVGDEDEDEEGGGKLEKGGKGKK 207

Query: 139 KKMEKLMKDYPLVVDEE-DPNWPEDADGWGFSLGQFFNKITIKDNKKAK---------DD 188
           KK +  +K + L  D E      E++D  G S  +   K+  K  KK K         D 
Sbjct: 208 KKKKSDLKIHDLEDDLELSSTESENSDEEGESRKKPQKKVPAKGGKKKKRKSDDEALEDS 267

Query: 189 DDDDDEGNKVVWQDDD 204
           DD D EG +V +  D+
Sbjct: 268 DDGDFEGQEVDYMSDE 283


>Y124_METJA (Q57588) Hypothetical protein MJ0124
          Length = 1075

 Score = 37.0 bits (84), Expect = 0.072
 Identities = 23/78 (29%), Positives = 43/78 (54%), Gaps = 9/78 (11%)

Query: 180 KDNKKAKDDDDDDDEGNKVVWQDDDYIRPIKDIKSSEWEETVFKDISPLIILV------H 233
           KDN K KD DD+D + +K +   ++ I+ I+D    E +E   K +  L+I++      H
Sbjct: 313 KDNNKEKDKDDEDLDLSKPI---EEIIKKIEDKLKKEEKEGKIKGLKDLLIILAFIYLKH 369

Query: 234 NRYRRPKENERIRDELEK 251
            + + P+E ++  + L+K
Sbjct: 370 LKEKNPEEYKKHIENLKK 387


>SYS_RICCN (Q92GA7) Seryl-tRNA synthetase (EC 6.1.1.11)
           (Serine--tRNA ligase) (SerRS)
          Length = 425

 Score = 36.6 bits (83), Expect = 0.094
 Identities = 45/205 (21%), Positives = 93/205 (44%), Gaps = 20/205 (9%)

Query: 34  LHKDKPRKQFLNLSLSSNLSLLVGDSKAPRRVQALKSDGAHRKSGKREASSDSDSDSDDE 93
           L  +K  ++F+   +SS +++L G+    R++ +L  +  H +  K +   +  S S +E
Sbjct: 13  LFDEKLSQRFIE-PMSSKIAMLDGEK---RKITSLIQEFQHARKVKSKILGNMASKSGEE 68

Query: 94  NDA----PPPINDPYLMTLEERQEWRRKIRQVMDMKPNVQEESDPEEKKKKMEKLMKDYP 149
            +        IN+  L  LE+      ++ ++++M PN+ ++  P    + M KL++ Y 
Sbjct: 69  FEGLQRDVKHINEK-LEALEQDLNNNNELNELLNMFPNIPDDEVPYGMDESMNKLVRTY- 126

Query: 150 LVVDEEDPNWPEDADGWGFSLGQFFNKITIKDNKKAKDDDDDDDEGNKVVWQDDDYIRPI 209
               E +PN     +   F LG   N +  +   K         +G+ +   +   I  +
Sbjct: 127 ---GETNPN---ALNKQHFELGIKLNLMDFEQTAKISGTRFVTLKGD-LAKLERALINFM 179

Query: 210 KDIKSSEWEETVFKDISPLIILVHN 234
            D+ + EW+   F +ISP +++  N
Sbjct: 180 IDVHTKEWD---FFEISPPVLVRDN 201


>SPT7_YEAST (P35177) Transcriptional activator SPT7
          Length = 1332

 Score = 36.6 bits (83), Expect = 0.094
 Identities = 41/176 (23%), Positives = 78/176 (44%), Gaps = 20/176 (11%)

Query: 72  GAHRKSGKREASSDSDSDSDDENDAPPPINDPYLMTL--EERQEWRRKIRQVMDMKPNVQ 129
           GAH  + +    S+ DS    +++AP   ND  L ++  E  +E  +     + +  NV 
Sbjct: 589 GAHMLAKENGKVSEKDSSKTVKDEAPT--NDDKLTSVIPEGEKEKDKTASSTVTVHENVN 646

Query: 130 EESDPEEKKKKMEKLMKDYPLVVD---EEDPNWPEDADGWGFSLGQFFNKITIKDNKKAK 186
           +    E  K + + ++++     D   + D    +  DG      +  NK   ++N++ +
Sbjct: 647 KNEIKENGKNEEQDMVEESSKTEDSSKDADAAKKDTEDGLQDKTAE--NKEAGENNEEEE 704

Query: 187 DDDDDDDEGNKV------VWQDDDYIRPIKDIKSSEWEETVFKDISPLIILVHNRY 236
           DDDD+D++ + V      + +DDD      D++ S W +TV   +   I L    Y
Sbjct: 705 DDDDEDEDEDMVDSQSYLLEKDDDR----DDLEISVW-KTVTAKVRAEICLKRTEY 755


>FKB3_YEAST (P38911) FK506-binding nuclear protein (EC 5.2.1.8)
           (Peptidyl-prolyl cis-trans isomerase) (PPIase) (Proline
           rotamase) (Nucleolar proline isomerase) (FKBP-70)
          Length = 411

 Score = 36.6 bits (83), Expect = 0.094
 Identities = 44/201 (21%), Positives = 90/201 (43%), Gaps = 19/201 (9%)

Query: 58  DSKAPRRVQALKSDGAHRKSGKR-EASSDSDSDSDDENDAPPPINDPYLMTLEERQEWRR 116
           D ++    +  K+    +  GK+ E+ S+ D + DDE+D      +  L+TL    ++++
Sbjct: 77  DEESSEEEEEEKTQKKKKSKGKKAESESEDDEEDDDEDD---EFQESVLLTLSPEAQYQQ 133

Query: 117 KIRQVMDMKPNVQ---EESDPEEKKKKMEKLMKDYPLVVDEEDPNWPEDADGW---GFSL 170
            +   +  +  VQ     S          K   D P+ V+ ED +  EDAD +    + L
Sbjct: 134 SLDLTITPEEEVQFIVTGSYAISLSGNYVKHPFDTPMGVEGEDED--EDADIYDSEDYDL 191

Query: 171 GQFFNKITIKDNKKAKDDDDDDDEGNKVVWQDDDYIRPIKDIKSSEWEETVFKDISPLII 230
               ++I I D+    DD+++++   + V ++D+     ++ +  E EE   +++ P   
Sbjct: 192 TPDEDEI-IGDDMDDLDDEEEEEVRIEEVQEEDEEDNDGEEEQEEEEEEEQKEEVKP--- 247

Query: 231 LVHNRYRRPKENERIRDELEK 251
                 +  KE +R  +E E+
Sbjct: 248 ---EPKKSKKEKKRKHEEKEE 265


>YP58_YEAST (Q99299) Hypothetical protein YPL158C
          Length = 758

 Score = 36.2 bits (82), Expect = 0.12
 Identities = 37/162 (22%), Positives = 71/162 (42%), Gaps = 13/162 (8%)

Query: 65  VQALKSDGAHRKSGKREASSDSDSDSDDENDAPPPINDPYLMT-LEERQEWRRKIRQVMD 123
           ++  + D   R     E  +   ++ +  N+    +   YL T + +R   R +I ++ +
Sbjct: 544 METTEVDNKDRVECNNEIQNVDANNEETSNEESYNLMKHYLSTVIAQRIMLRVQIARIQN 603

Query: 124 MKPNVQEESDPEEKKKKMEKLMKDYPLVVDEEDPNWPEDADGWGFSLGQFFNKITIK-DN 182
            K NV   +   E    + + + D  L   E        ADG   S  Q F+ +T++ D 
Sbjct: 604 YKSNVVYMNKSAETNSTIYEDLVDSLLTEYE--------ADG---SSSQIFDGVTVRADE 652

Query: 183 KKAKDDDDDDDEGNKVVWQDDDYIRPIKDIKSSEWEETVFKD 224
           ++ +D+DD+DDE  +    D++     +D +  E EE   K+
Sbjct: 653 EEEEDEDDEDDEEEEEENDDEEDEEDEEDDEDDEEEEEKRKE 694


>NUCL_HUMAN (P19338) Nucleolin (Protein C23)
          Length = 706

 Score = 36.2 bits (82), Expect = 0.12
 Identities = 35/144 (24%), Positives = 58/144 (39%), Gaps = 41/144 (28%)

Query: 85  DSDSDSDDENDAPPPINDPYLMTLEERQEWRRKIRQVMDMK-PNVQEESDPEEKKKKMEK 143
           D + D DDE+D     +D     +E      +K  +V+ +K  NV E+ D EE       
Sbjct: 187 DDEDDEDDEDDDDDEEDDSEEEAMETTPAKGKKAAKVVPVKAKNVAEDEDEEE------- 239

Query: 144 LMKDYPLVVDEEDPNWPEDADGWGFSLGQFFNKITIKDNKKAKDDDDDDDEGNKVVWQDD 203
                    D+ED    ED D                D++  +DDDD+DDE      +++
Sbjct: 240 ---------DDED----EDDD----------------DDEDDEDDDDEDDEEE----EEE 266

Query: 204 DYIRPIKDIKSSEWEETVFKDISP 227
           +   P+K+      +E   +  +P
Sbjct: 267 EEEEPVKEAPGKRKKEMAKQKAAP 290



 Score = 34.7 bits (78), Expect = 0.36
 Identities = 35/160 (21%), Positives = 70/160 (42%), Gaps = 26/160 (16%)

Query: 67  ALKSDGAHRKSGKREASSDSDSDSDDENDAPPPINDPYLMTLEERQEWRRKIRQVMDMKP 126
           A+ + GA  K+GK     DSD + DD+++     ++      E+  E      +     P
Sbjct: 127 AIPAKGA--KNGKNAKKEDSDEEEDDDSEEDEEDDED---EDEDEDEIEPAAMKAAAAAP 181

Query: 127 NVQEESDPEEKKKKMEKLMKDYPLVVDEEDPNWPEDADGWGFSLGQFFNKI-------TI 179
             ++E D +++  + +          D+E+ +  E+A     + G+   K+         
Sbjct: 182 ASEDEDDEDDEDDEDDD---------DDEEDDSEEEAMETTPAKGKKAAKVVPVKAKNVA 232

Query: 180 KDNKKAKDDDDDDDEGNKVVWQDDDYIRPIKDIKSSEWEE 219
           +D  + +DD+D+DD+ ++    DDD     +D +  E EE
Sbjct: 233 EDEDEEEDDEDEDDDDDEDDEDDDD-----EDDEEEEEEE 267


>YE06_SCHPO (O13803) Hypothetical protein C17H9.06c in chromosome I
          Length = 601

 Score = 35.8 bits (81), Expect = 0.16
 Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 9/115 (7%)

Query: 39  PRKQFLNLSLSSNLS--LLVGDSKAPRRVQALKSDGAHRKSG-KREASSDSDSDSDDEND 95
           PR++ + ++  + LS  +L  DS   R+  +   + A + S  KR+    S S  DDE+ 
Sbjct: 216 PREENVTITRKTKLSSNILYSDSDTERQSDSGSKNVARQFSRIKRKRKVLSSSSEDDESS 275

Query: 96  APPPINDPYLMTLEERQEWRRKIRQVMDMKPNVQ--EESDPE----EKKKKMEKL 144
           +P  +  P + + EE +      ++V D+ P  +  EE  P      KK   EKL
Sbjct: 276 SPEDLLKPIIRSTEEMENLNELEQEVQDLDPIDEGFEEKVPRFRNPSKKAFYEKL 330


>NAB3_YEAST (P38996) Nuclear polyadenylated RNA-binding protein 3
          Length = 802

 Score = 35.8 bits (81), Expect = 0.16
 Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 15/128 (11%)

Query: 77  SGKREASSDSDSDSDDENDAPPPINDPYLMTLEERQEWRRKIRQVMDMKPNVQEESDPEE 136
           S + E  ++S +D   E DAP    +       ER+E   +  ++ D+  N +EE D EE
Sbjct: 24  SNENELMNNSSADDGIEFDAPEEEREA------EREEENEEQHELEDV--NDEEEEDKEE 75

Query: 137 KKKKMEKLMKDYPLVVDEEDPNWPEDADGWGFSLGQFFNKITIKDNKKAKDDDDDDDEGN 196
           K ++  +       V++ E+    E     G       N+   ++ +   DDDDDDD+  
Sbjct: 76  KGEENGE-------VINTEEEEEEEHQQKGGNDDDDDDNEEEEEEEEDDDDDDDDDDDDE 128

Query: 197 KVVWQDDD 204
           +   ++++
Sbjct: 129 EEEEEEEE 136


>IF38_CAEEL (O02328) Probable eukaryotic translation initiation
           factor 3 subunit 8 (eIF3 p110) (eIF3c)
          Length = 898

 Score = 35.8 bits (81), Expect = 0.16
 Identities = 25/98 (25%), Positives = 53/98 (53%), Gaps = 7/98 (7%)

Query: 65  VQALKSDGAHRKSGKREASSDSDSDSDDENDAPPPINDPYLMTLEERQ---EWRRKIRQV 121
           V   K++ +  K  ++ A SDSDSDSDD+ D+    ++P   + ++     +  +  R  
Sbjct: 188 VSESKAEKSPGKPSEKAAVSDSDSDSDDD-DSSNWSSEPESNSSDDEDSVTKMEQLRRYF 246

Query: 122 MDMKPNVQEESDPEEKKKKMEKLMKDYPLVVDEEDPNW 159
           +  +  V+ + D +EKKK++ ++ +    V +++D +W
Sbjct: 247 LKKEFRVESKDDKKEKKKRVIRVKE---AVEEDDDADW 281



 Score = 32.7 bits (73), Expect = 1.4
 Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 33/141 (23%)

Query: 104 YLMTLEERQEWRRKIRQVMDMK-----------PNVQEESDPEEKKKKMEKLMKDYPLVV 152
           Y+ +L E +++  K+    D K           P ++++     K ++++ L+ DY +  
Sbjct: 110 YIRSLVEIEDYVNKLWDDKDAKSALSKNNAKALPPLRQKLKKYIKDQQLQDLVTDYRVNP 169

Query: 153 DEEDPNWPEDADGWGF----------SLGQFFNKITIKDNKKAKDDDDDDDEGNKVVWQD 202
           DE+    PED D   F          S G+   K  + D   +  D DDDD  N   W  
Sbjct: 170 DEDGYETPEDEDDDDFGEVSESKAEKSPGKPSEKAAVSD---SDSDSDDDDSSN---WSS 223

Query: 203 DDYIRPIKDIKSSEWEETVFK 223
           +       +  SS+ E++V K
Sbjct: 224 E------PESNSSDDEDSVTK 238


>DAXX_MOUSE (O35613) Death domain-associated protein 6 (Daxx)
          Length = 739

 Score = 35.8 bits (81), Expect = 0.16
 Identities = 28/124 (22%), Positives = 55/124 (43%), Gaps = 3/124 (2%)

Query: 98  PPINDPYLMTL--EERQEWRRKIRQVMDMKPNVQEESDPEEKKKKMEKLMKDYPLVVDEE 155
           P ++DP L     E R     ++ +V+     +Q++++  E++K+  +L+   P   D  
Sbjct: 356 PALSDPTLARRLRENRTLAMNRLDEVISKYAMMQDKTEEGERQKRRARLLGTAPQPSDPP 415

Query: 156 DPNWPEDADGWGFSLGQFFNKITIKDNKKAKDDDDDDDEGNKVVWQDDDYIRPIKDIKSS 215
             +  E  +G      Q     +  +     DDDDDDDE N+   ++++     K+    
Sbjct: 416 QAS-SESGEGPSGMASQECPTTSKAETDDDDDDDDDDDEDNEESEEEEEEEEEEKEATED 474

Query: 216 EWEE 219
           E E+
Sbjct: 475 EDED 478


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.315    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,922,393
Number of Sequences: 164201
Number of extensions: 2032233
Number of successful extensions: 9315
Number of sequences better than 10.0: 210
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 193
Number of HSP's that attempted gapping in prelim test: 8344
Number of HSP's gapped (non-prelim): 649
length of query: 342
length of database: 59,974,054
effective HSP length: 111
effective length of query: 231
effective length of database: 41,747,743
effective search space: 9643728633
effective search space used: 9643728633
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 66 (30.0 bits)