BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0177.9
(113 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RPC2_LOTJA (Q9BBS7) DNA-directed RNA polymerase beta'' chain (EC... 210 5e-55
RPC2_PEA (P12227) DNA-directed RNA polymerase beta'' chain (EC 2... 201 2e-52
RPC2_SOYBN (Q8HVY3) DNA-directed RNA polymerase beta'' chain (EC... 198 2e-51
RPC2_CALFE (Q7YJY0) DNA-directed RNA polymerase beta'' chain (EC... 198 2e-51
RPC2_ATRBE (Q8S8Y1) DNA-directed RNA polymerase beta'' chain (EC... 196 8e-51
RPC2_TOBAC (P38550) DNA-directed RNA polymerase beta'' chain (EC... 195 1e-50
RPC2_SPIOL (P11704) DNA-directed RNA polymerase beta'' chain (EC... 193 5e-50
RPC2_ARATH (P56764) DNA-directed RNA polymerase beta'' chain (EC... 193 5e-50
RPC2_OENHO (Q9MTM3) DNA-directed RNA polymerase beta'' chain (EC... 192 9e-50
RPC2_SINAL (Q9THV5) DNA-directed RNA polymerase beta'' chain (EC... 191 2e-49
RPC2_WHEAT (Q9XPS9) DNA-directed RNA polymerase beta'' chain (EC... 190 6e-49
RPC2_ORYSA (P12093) DNA-directed RNA polymerase beta'' chain (EC... 190 6e-49
RPC2_MAIZE (P16025) DNA-directed RNA polymerase beta'' chain (EC... 187 3e-48
RPC2_AMBTC (P60289) DNA-directed RNA polymerase beta'' chain (EC... 185 2e-47
RPC2_PINKO (Q85X62) DNA-directed RNA polymerase beta'' chain (EC... 168 2e-42
RPC2_PINTH (P41606) DNA-directed RNA polymerase beta'' chain (EC... 164 3e-41
RPC2_PHYPA (P60290) DNA-directed RNA polymerase beta'' chain (EC... 154 3e-38
RPC2_ANTFO (Q85C71) DNA-directed RNA polymerase beta'' chain (EC... 154 3e-38
RPC2_MARPO (P06274) DNA-directed RNA polymerase beta'' chain (EC... 153 6e-38
RPC2_PSINU (Q8WI26) DNA-directed RNA polymerase beta'' chain (EC... 144 5e-35
>RPC2_LOTJA (Q9BBS7) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1332
Score = 210 bits (534), Expect = 5e-55
Identities = 110/113 (97%), Positives = 112/113 (98%)
Query: 1 AQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRA 60
AQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFS GELIGLLRA
Sbjct: 1172 AQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRA 1231
Query: 61 QRTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
QRTGRALEESICYRT+LLGITKTS+NTQSFISEASFQETARVLAKAALRGRID
Sbjct: 1232 QRTGRALEESICYRTLLLGITKTSLNTQSFISEASFQETARVLAKAALRGRID 1284
>RPC2_PEA (P12227) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit) (Fragment)
Length = 1163
Score = 201 bits (512), Expect = 2e-52
Identities = 103/113 (91%), Positives = 110/113 (97%)
Query: 1 AQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRA 60
AQSRISLVNKIQ+VYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSN+F GELIGLLRA
Sbjct: 984 AQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRA 1043
Query: 61 QRTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
+RTGRALEE+ICYR +LLG+TKTS+NTQSFISEASFQETARVLAKAALRGRID
Sbjct: 1044 ERTGRALEEAICYRALLLGVTKTSLNTQSFISEASFQETARVLAKAALRGRID 1096
>RPC2_SOYBN (Q8HVY3) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1384
Score = 198 bits (503), Expect = 2e-51
Identities = 102/113 (90%), Positives = 109/113 (96%)
Query: 1 AQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRA 60
AQSRISLVNKIQ+VYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVF GELIGLLRA
Sbjct: 1200 AQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLRA 1259
Query: 61 QRTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
+R GR+LEE+ICYR +LLGITKTS+NTQSFISEASFQETARVL+KAALRGRID
Sbjct: 1260 ERAGRSLEEAICYRVLLLGITKTSLNTQSFISEASFQETARVLSKAALRGRID 1312
>RPC2_CALFE (Q7YJY0) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1377
Score = 198 bits (503), Expect = 2e-51
Identities = 103/113 (91%), Positives = 109/113 (96%)
Query: 1 AQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRA 60
AQSRISLVNKIQ+VYRSQGV IHNRHIEIIVRQITS+VLVSEDGMSNVFS GELIGLLRA
Sbjct: 1193 AQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSRVLVSEDGMSNVFSPGELIGLLRA 1252
Query: 61 QRTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
+RTGRALEE+ICYR ILLGIT+ S+NTQSFISEASFQETARVLAKAALRGRID
Sbjct: 1253 ERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRID 1305
>RPC2_ATRBE (Q8S8Y1) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1389
Score = 196 bits (498), Expect = 8e-51
Identities = 102/113 (90%), Positives = 108/113 (95%)
Query: 1 AQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRA 60
AQSRISLVNKIQ+VYRSQGV IHNRHIEIIVRQITSKVLVSEDGMSNVFS GELIGLLRA
Sbjct: 1196 AQSRISLVNKIQQVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRA 1255
Query: 61 QRTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
+R GRALEE+ICYR +LLGIT+ S+NTQSFISEASFQETARVLAKAALRGRID
Sbjct: 1256 ERMGRALEEAICYRVVLLGITRASLNTQSFISEASFQETARVLAKAALRGRID 1308
>RPC2_TOBAC (P38550) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1388
Score = 195 bits (496), Expect = 1e-50
Identities = 101/113 (89%), Positives = 108/113 (95%)
Query: 1 AQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRA 60
AQSRISLVNKIQ+VYRSQGV IHNRH+EIIVRQITSKVLVSEDGMSNVFS GELIGLLRA
Sbjct: 1195 AQSRISLVNKIQQVYRSQGVQIHNRHLEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRA 1254
Query: 61 QRTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
+R GRALEE+ICYR +LLGIT+ S+NTQSFISEASFQETARVLAKAALRGRID
Sbjct: 1255 ERMGRALEEAICYRVVLLGITRASLNTQSFISEASFQETARVLAKAALRGRID 1307
>RPC2_SPIOL (P11704) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1361
Score = 193 bits (491), Expect = 5e-50
Identities = 101/113 (89%), Positives = 106/113 (93%)
Query: 1 AQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRA 60
AQSRISLVNKIQ+VYRSQGV IHNRHIEIIVRQITSKVLVSEDGMSNVF GELIGL RA
Sbjct: 1183 AQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRA 1242
Query: 61 QRTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
+RTGRALEE+ICYR LLGIT+ S+NTQSFISEASFQETARVLAKAALRGRID
Sbjct: 1243 ERTGRALEEAICYRATLLGITRASLNTQSFISEASFQETARVLAKAALRGRID 1295
>RPC2_ARATH (P56764) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1376
Score = 193 bits (491), Expect = 5e-50
Identities = 100/112 (89%), Positives = 107/112 (95%)
Query: 2 QSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRAQ 61
QSRISLVNKIQ+VYRSQGV IHNRHIEIIVRQITSKVLVSE+GMSNVF GELIGLLRA+
Sbjct: 1191 QSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEEGMSNVFLPGELIGLLRAE 1250
Query: 62 RTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
RTGRALEE+ICYR +LLGIT+ S+NTQSFISEASFQETARVLAKAALRGRID
Sbjct: 1251 RTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRID 1302
>RPC2_OENHO (Q9MTM3) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1386
Score = 192 bits (489), Expect = 9e-50
Identities = 101/112 (90%), Positives = 106/112 (94%)
Query: 2 QSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRAQ 61
QSRISLVNKIQ+VYRSQGV IHNRHIEIIVRQITSKVLVSEDGMSNVF ELIGLLRA+
Sbjct: 1195 QSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPRELIGLLRAE 1254
Query: 62 RTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
RTGRALEESICY+ LLGIT+TS+NTQSFISEASFQETARVLAKAALRGRID
Sbjct: 1255 RTGRALEESICYKAFLLGITRTSLNTQSFISEASFQETARVLAKAALRGRID 1306
>RPC2_SINAL (Q9THV5) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1384
Score = 191 bits (486), Expect = 2e-49
Identities = 99/112 (88%), Positives = 107/112 (95%)
Query: 2 QSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRAQ 61
QSRISLVNKI++VYRSQGV IHNRHIEIIVRQITSKVLVSE+GMSNVF GELIGLLRA+
Sbjct: 1199 QSRISLVNKIKQVYRSQGVQIHNRHIEIIVRQITSKVLVSEEGMSNVFLPGELIGLLRAE 1258
Query: 62 RTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
RTGRALEE+ICYR +LLGIT+ S+NTQSFISEASFQETARVLAKAALRGRID
Sbjct: 1259 RTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRID 1310
>RPC2_WHEAT (Q9XPS9) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1479
Score = 190 bits (482), Expect = 6e-49
Identities = 99/113 (87%), Positives = 106/113 (93%)
Query: 1 AQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRA 60
AQSRISLVNKIQ+VYRSQGV IHNRHIEII+RQ+TSKV VSEDGMSNVFS GELIGLLRA
Sbjct: 1295 AQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFSPGELIGLLRA 1354
Query: 61 QRTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
+R GRAL+ESI YR ILLGIT+ S+NTQSFISEASFQETARVLAKAALRGRID
Sbjct: 1355 ERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRID 1407
>RPC2_ORYSA (P12093) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1513
Score = 190 bits (482), Expect = 6e-49
Identities = 99/113 (87%), Positives = 106/113 (93%)
Query: 1 AQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRA 60
AQSRISLVNKIQ+VYRSQGV IHNRHIEII+RQ+TSKV VSEDGMSNVFS GELIGLLRA
Sbjct: 1320 AQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFSPGELIGLLRA 1379
Query: 61 QRTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
+R GRAL+ESI YR ILLGIT+ S+NTQSFISEASFQETARVLAKAALRGRID
Sbjct: 1380 ERAGRALDESIYYRAILLGITRVSLNTQSFISEASFQETARVLAKAALRGRID 1432
>RPC2_MAIZE (P16025) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1527
Score = 187 bits (476), Expect = 3e-48
Identities = 98/113 (86%), Positives = 105/113 (92%)
Query: 1 AQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRA 60
AQSRISLVNKIQ+VYRSQGV IHNRHIEII+RQ+TSKV VSEDGMSNVF GELIGLLRA
Sbjct: 1332 AQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA 1391
Query: 61 QRTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
+R GRAL+ESI YR ILLGIT+ S+NTQSFISEASFQETARVLAKAALRGRID
Sbjct: 1392 ERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRID 1444
>RPC2_AMBTC (P60289) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1373
Score = 185 bits (469), Expect = 2e-47
Identities = 97/112 (86%), Positives = 102/112 (90%)
Query: 2 QSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRAQ 61
QSRISLVNKIQ+VYRSQGV IHNRHIE IVRQITSKVLVSEDGMSNVFS ELIGLLRA+
Sbjct: 1189 QSRISLVNKIQKVYRSQGVQIHNRHIETIVRQITSKVLVSEDGMSNVFSPRELIGLLRAE 1248
Query: 62 RTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
R GRALE+ ICYR ILLGIT+ S+NTQSFISEASFQET RVLAKAALR RID
Sbjct: 1249 RIGRALEDDICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRSRID 1300
>RPC2_PINKO (Q85X62) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1209
Score = 168 bits (425), Expect = 2e-42
Identities = 88/112 (78%), Positives = 102/112 (90%)
Query: 2 QSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRAQ 61
QS+I LVN+IQ+VYRSQGV I ++HIEIIVRQ+TSKVL+SEDG +NVFS GELIGL RAQ
Sbjct: 1022 QSQIHLVNQIQKVYRSQGVRIGDKHIEIIVRQMTSKVLISEDGTANVFSPGELIGLSRAQ 1081
Query: 62 RTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
R RALEE+I Y+T+LLGIT+ S+NTQSFISEASFQETARVLAKAAL+GRID
Sbjct: 1082 RMDRALEETIYYQTMLLGITRASLNTQSFISEASFQETARVLAKAALQGRID 1133
>RPC2_PINTH (P41606) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1224
Score = 164 bits (415), Expect = 3e-41
Identities = 86/112 (76%), Positives = 101/112 (89%)
Query: 2 QSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRAQ 61
QS+I LVN+IQ+VYRSQGV I ++HIE+IVRQ+TSKVL+SEDG +NVFS GELI L RAQ
Sbjct: 1036 QSQIHLVNQIQKVYRSQGVRIGDKHIEVIVRQMTSKVLISEDGTANVFSPGELIVLSRAQ 1095
Query: 62 RTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
R RALEE+I Y+T+LLGIT+ S+NTQSFISEASFQETARVLAKAAL+GRID
Sbjct: 1096 RMDRALEEAIYYQTMLLGITRASLNTQSFISEASFQETARVLAKAALQGRID 1147
>RPC2_PHYPA (P60290) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1330
Score = 154 bits (390), Expect = 3e-38
Identities = 81/112 (72%), Positives = 95/112 (84%)
Query: 2 QSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRAQ 61
QS+++LVN+IQ+VYRSQGV+I ++HIEIIVRQ+TSKV EDGM+N F GELI RA+
Sbjct: 1147 QSQVNLVNQIQKVYRSQGVNISDKHIEIIVRQMTSKVFTLEDGMTNGFLPGELIEFARAK 1206
Query: 62 RTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
R RALEE I Y+ +LLGITK S+NTQSFISEASFQET RVLAKAALRGRID
Sbjct: 1207 RMNRALEEVIPYKPVLLGITKASLNTQSFISEASFQETTRVLAKAALRGRID 1258
>RPC2_ANTFO (Q85C71) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1445
Score = 154 bits (389), Expect = 3e-38
Identities = 81/112 (72%), Positives = 95/112 (84%)
Query: 2 QSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRAQ 61
QS+I+LV++IQ VY+SQGV+I ++HIEI+VRQ+TSKVL EDGM+N F GELI RAQ
Sbjct: 1246 QSQINLVDQIQEVYQSQGVYISDKHIEIVVRQMTSKVLTLEDGMANGFLPGELIESSRAQ 1305
Query: 62 RTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
R R LEES+ Y+ ILLGITK S+NTQSFISEASFQET RVLAKAALRGRID
Sbjct: 1306 RMNRVLEESVLYKPILLGITKASLNTQSFISEASFQETTRVLAKAALRGRID 1357
>RPC2_MARPO (P06274) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1386
Score = 153 bits (387), Expect = 6e-38
Identities = 79/112 (70%), Positives = 95/112 (84%)
Query: 2 QSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRAQ 61
Q +I+LV++IQ+VY+SQGV I N+HIEIIVRQ+TSKV+ EDGM+NVF GELI R Q
Sbjct: 1189 QGQINLVDQIQKVYQSQGVQISNKHIEIIVRQMTSKVITLEDGMTNVFLPGELIEFSRTQ 1248
Query: 62 RTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
+ RALEE++ Y+ ILLGITK S+NTQSFISEASFQET RVLAKAAL+GRID
Sbjct: 1249 KMNRALEEAVPYKPILLGITKASLNTQSFISEASFQETTRVLAKAALKGRID 1300
>RPC2_PSINU (Q8WI26) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1408
Score = 144 bits (362), Expect = 5e-35
Identities = 77/112 (68%), Positives = 92/112 (81%)
Query: 2 QSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRAQ 61
QSR LV++IQ VY+SQGV I ++HIEIIVRQ+TSKVL EDG++ VF GELI L RAQ
Sbjct: 1213 QSRKDLVDQIQGVYQSQGVQISDKHIEIIVRQMTSKVLTLEDGIATVFLPGELIELPRAQ 1272
Query: 62 RTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
R RAL++ I Y+ ILLGITK S+NT SF+SEASFQET RVLA+AA+RGRID
Sbjct: 1273 RMNRALKQLIYYKPILLGITKASLNTTSFLSEASFQETTRVLARAAIRGRID 1324
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.322 0.134 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,625,441
Number of Sequences: 164201
Number of extensions: 302032
Number of successful extensions: 1065
Number of sequences better than 10.0: 178
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 740
Number of HSP's gapped (non-prelim): 211
length of query: 113
length of database: 59,974,054
effective HSP length: 89
effective length of query: 24
effective length of database: 45,360,165
effective search space: 1088643960
effective search space used: 1088643960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0177.9