BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0177.6
(1032 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 541 e-153
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 479 e-134
YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein 159 4e-38
M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810... 155 4e-37
YJZ9_YEAST (P47100) Transposon Ty1 protein B 115 5e-25
YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B) 115 5e-25
YMU0_YEAST (Q04670) Transposon Ty1 protein B 115 8e-25
YME4_YEAST (Q04711) Transposon Ty1 protein B 114 2e-24
YMD9_YEAST (Q03434) Transposon Ty1 protein B 113 3e-24
YMT5_YEAST (Q04214) Transposon Ty1 protein B 112 5e-24
YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein 111 9e-24
YJZ7_YEAST (P47098) Transposon Ty1 protein B 111 1e-23
M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820... 99 6e-20
M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240... 68 1e-10
POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.2... 59 7e-08
M710_ARATH (P92512) Hypothetical mitochondrial protein AtMg00710... 58 1e-07
POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.2... 55 1e-06
POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse transcript... 55 1e-06
POL3_MOUSE (P11367) Retrovirus-related Pol polyprotein (Endonucl... 52 6e-06
POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.2... 52 1e-05
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 541 bits (1394), Expect = e-153
Identities = 341/1048 (32%), Positives = 557/1048 (52%), Gaps = 49/1048 (4%)
Query: 11 WYLDSGCSRHMTGERRMFRELKLKPGGEVGFGGNEKGKIVGTGTICVDSSP----CIDNV 66
W +D+ S H T R +F G V G KI G G IC+ ++ + +V
Sbjct: 294 WVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDV 353
Query: 67 LLVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGS-VLFNSKRKNNIYKIR--LSE 123
V L NL+S L GY+ F + R GS V+ + +Y+ + +
Sbjct: 354 RHVPDLRMNLISGIALDRDGYESYFANQKWRLTK---GSLVIAKGVARGTLYRTNAEICQ 410
Query: 124 LEAQNVKCLLSVNEEQWVWHRRLGHASMRKISQLSKLNLVRGLPNLKFASDALCEACQKD 183
E + +SV+ +WH+R+GH S + + L+K +L+ K + C+ C
Sbjct: 411 GELNAAQDEISVD----LWHKRMGHMSEKGLQILAKKSLIS---YAKGTTVKPCDYCLFG 463
Query: 184 KFTKVPFKAKNVVSTSRSLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLTRK 243
K +V F+ + + L+L++ D+ GP++ ES+GG +Y + +DD SR WV L K
Sbjct: 464 KQHRVSFQTSSERKLN-ILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTK 522
Query: 244 DESHAVFSTFIAQVQNEKACRIVRVRSDHGGKFENDKFESLFDSYGIAHDFSCPRTPQQN 303
D+ VF F A V+ E ++ R+RSD+GG++ + +FE S+GI H+ + P TPQ N
Sbjct: 523 DQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHN 582
Query: 304 GVVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRISVRPILNKTPYELWKNIK 363
GV ER NRT+ E R+ML+ + K FW EAV TACY+ NR P+ + P +W N +
Sbjct: 583 GVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKE 642
Query: 364 PNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSERSKGFRFYNTDAKTIEESIHV 423
+ S+ FGC + K++ K D KS C+ +GY + G+R ++ K + S V
Sbjct: 643 VSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDV 702
Query: 424 RFDD---KLDSDQSKLVEK--------FADLSINVSDKGKAPEEVEPEEDEPEE--EAGP 470
F + + +D S+ V+ S N + +EV + ++P E E G
Sbjct: 703 VFRESEVRTAADMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQGE 762
Query: 471 SNSQTLKKSRITAAHPKELIMGNKDEPVRTRSAFRPSEETLLSLKGLVSLIEPKSIDEAL 530
+ +++ ++ + E R S PS E +L + EP+S+ E L
Sbjct: 763 QLDEGVEEVEHPTQGEEQHQPLRRSERPRVESRRYPSTEYVL----ISDDREPESLKEVL 818
Query: 531 Q--DKDWIL-AMEEELNQFSKNDVWSLVKKPESVHVIGTKWVFRNKLNEKGDVVRNKARL 587
+K+ ++ AM+EE+ KN + LV+ P+ + KWVF+ K + +VR KARL
Sbjct: 819 SHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARL 878
Query: 588 VAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQIDVKSAFLNGYISEEVYV 647
V +G+ Q++GID+ E F+PV ++ +IR ++S + + ++ + Q+DVK+AFL+G + EE+Y+
Sbjct: 879 VVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYM 938
Query: 648 HQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFERGKVDTTLFCKTY- 706
QP GFE K V KL KSLYGLKQAPR WY + SF+ + + D ++ K +
Sbjct: 939 EQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFS 998
Query: 707 KDDILIVQIYVDDIIFGSANQSLCKEFYEMMQAEFEMSMMGELKYFLGIQV--DQTPEGT 764
+++ +I+ +YVDD++ ++ L + + F+M +G + LG+++ ++T
Sbjct: 999 ENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKL 1058
Query: 765 YIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKE------DKSGKVCQKLYRGTIGSL 818
++ Q KY + +L++FNM + TP+ L K+ ++ G + + Y +GSL
Sbjct: 1059 WLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSL 1118
Query: 819 LY-LTASRPDILFSVHLCARF*SDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYKLSG 877
+Y + +RPDI +V + +RF +P + H AVK ILRYL+GTT L + S+ L G
Sbjct: 1119 MYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCF-GGSDPILKG 1177
Query: 878 YCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWM 937
Y DAD AGD RKS++G +SW SK Q +ALST EAEYI+A +M+W+
Sbjct: 1178 YTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWL 1237
Query: 938 KH*LEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFV 997
K L++ + + +YCD+ +AI LSKN + H+R KHI+V+YH+IR+ V L + +
Sbjct: 1238 KRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKI 1297
Query: 998 DTDHQWADIFTKPLAEDRFNFILKNLNM 1025
T+ AD+ TK + ++F + + M
Sbjct: 1298 STNENPADMLTKVVPRNKFELCKELVGM 1325
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 479 bits (1234), Expect = e-134
Identities = 344/1119 (30%), Positives = 561/1119 (49%), Gaps = 133/1119 (11%)
Query: 13 LDSGCSRHMTGERRMFRE-LKLKPGGEVGFGGNEKGKIV-----GTGTICVDSSPCIDNV 66
LDSG S H+ + ++ + +++ P ++ ++G+ + G + D +++V
Sbjct: 291 LDSGASDHLINDESLYTDSVEVVPPLKIAVA--KQGEFIYATKRGIVRLRNDHEITLEDV 348
Query: 67 LLVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELEA 126
L NL+S+ +L + G + F+ KS +S+ V+ NS NN+ I +A
Sbjct: 349 LFCKEAAGNLMSVKRLQEAGMSIEFD-KSGVTISKNGLMVVKNSGMLNNVPVINF---QA 404
Query: 127 QNVKCLLSVNEEQWVWHRRLGHASMRKISQLSKLNLVRG---LPNLKFASDALCEACQKD 183
++ N +WH R GH S K+ ++ + N+ L NL+ + + +CE C
Sbjct: 405 YSINAKHKNNFR--LWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCE-ICEPCLNG 461
Query: 184 KFTKVPFKA-KNVVSTSRSLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLTR 242
K ++PFK K+ R L ++H D+ GP+ ++ K Y ++ VD ++ + +
Sbjct: 462 KQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKY 521
Query: 243 KDESHAVFSTFIAQVQNEKACRIVRVRSDHGGKFENDKFESLFDSYGIAHDFSCPRTPQQ 302
K + ++F F+A+ + ++V + D+G ++ +++ GI++ + P TPQ
Sbjct: 522 KSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQL 581
Query: 303 NGVVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRISVRPIL--NKTPYELWK 360
NGV ER RT+ E ARTM+ + K FW EAV TA Y+ NRI R ++ +KTPYE+W
Sbjct: 582 NGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWH 641
Query: 361 NIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSERSKGFRFYN--------- 411
N KP + + FG YV + K++ KFD KS K + +GY GF+ ++
Sbjct: 642 NKKPYLKHLRVFGATVYV-HIKNKQGKFDDKSFKSIFVGY--EPNGFKLWDAVNEKFIVA 698
Query: 412 ----TDAKTIEESIHVRFD------------DKLDSDQSKLVE-------KFADLSINVS 448
D + S V+F+ +D K+++ K D +
Sbjct: 699 RDVVVDETNMVNSRAVKFETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECDNIQFLK 758
Query: 449 DKGKAPEEVEPEEDE-------PEEEAGPSNSQTLKKSRITAAH-PKELIMGNKDEPV-R 499
D ++ + P + P E N Q LK S+ + + E +D+ +
Sbjct: 759 DSKESENKNFPNDSRKIIQTEFPNESKECDNIQFLKDSKESNKYFLNESKKRKRDDHLNE 818
Query: 500 TRSAFRPSE----ETLLSLKGL----------VSLIEPKSIDEALQDKDWILAMEEELNQ 545
++ + P+E ET LK + + +I +S E L+ K I + EE N
Sbjct: 819 SKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEIINRRS--ERLKTKPQI-SYNEEDNS 875
Query: 546 FSK---------NDV---------------WSLVKKPE-SVHVIGTKWVFRNKLNEKGDV 580
+K NDV W E + H I W + K V
Sbjct: 876 LNKVVLNAHTIFNDVPNSFDEIQYRDDKSSWEEAINTELNAHKINNTWTITKRPENKNIV 935
Query: 581 ----------------VRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHN 624
+R KARLVA+G++Q+ IDY ETFAPVAR+ + R ++S + +N
Sbjct: 936 DSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYN 995
Query: 625 IVLHQIDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLS 684
+ +HQ+DVK+AFLNG + EE+Y+ P G D+V KL K++YGLKQA R W+E
Sbjct: 996 LKVHQMDVKTAFLNGTLKEEIYMRLPQGISCNS--DNVCKLNKAIYGLKQAARCWFEVFE 1053
Query: 685 SFLLENEFERGKVDTTLFC--KTYKDDILIVQIYVDDIIFGSANQSLCKEFYEMMQAEFE 742
L E EF VD ++ K ++ + V +YVDD++ + + + F + +F
Sbjct: 1054 QALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFR 1113
Query: 743 MSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDK 802
M+ + E+K+F+GI+++ + Y+ QS Y K++L KFNM TP+ P+ I +
Sbjct: 1114 MTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPL-PSKINYELLN 1172
Query: 803 SGKVCQKLYRGTIGSLLY-LTASRPDILFSVHLCARF*SDPRETHLTAVKRILRYLKGTT 861
S + C R IG L+Y + +RPD+ +V++ +R+ S +KR+LRYLKGT
Sbjct: 1173 SDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTI 1232
Query: 862 NLGLMYKK--TSEYKLSGYCDADYAGDRTERKSTSGNC-QFLGSNLVSWASKRQSTIALS 918
++ L++KK E K+ GY D+D+AG +RKST+G + NL+ W +KRQ+++A S
Sbjct: 1233 DMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAAS 1292
Query: 919 TAEAEYISAAICSTQMLWMKH*LEDYQI-LESNIPIYCDNTAAISLSKNPILHSRAKHIE 977
+ EAEY++ + LW+K L I LE+ I IY DN IS++ NP H RAKHI+
Sbjct: 1293 STEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHID 1352
Query: 978 VKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRF 1016
+KYHF R+ VQ V+ L+++ T++Q ADIFTKPL RF
Sbjct: 1353 IKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARF 1391
>YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein
Length = 308
Score = 159 bits (402), Expect = 4e-38
Identities = 96/309 (31%), Positives = 166/309 (53%), Gaps = 17/309 (5%)
Query: 630 IDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLE 689
+DV +AFLN + E +YV QPPGF +E+ PD+V++L +YGLKQAP W E +++ L +
Sbjct: 1 MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60
Query: 690 NEFERGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFYEMMQAEFEMSMMGEL 749
F R + + L+ ++ D + + +YVDD++ + + + + + + M +G++
Sbjct: 61 IGFCRHEGEHGLYFRSTSDGPIYIGVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120
Query: 750 KYFLGIQVDQTPEG-------TYIHQSKYTKELLKKFNMLESTVAKT-PMHPTCILEKED 801
FLG+ + Q+ G YI ++ E + F + ++ + + P+ T +D
Sbjct: 121 DKFLGLNIHQSTNGDITLSLQDYIAKAASESE-INTFKLTQTPLCNSKPLFETTSPHLKD 179
Query: 802 KSGKVCQKLYRGTIGSLLY-LTASRPDILFSVHLCARF*SDPRETHLTAVKRILRYLKGT 860
+ Y+ +G LL+ RPDI + V L +RF +PR HL + +R+LRYL T
Sbjct: 180 ITP------YQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTT 233
Query: 861 TNLGLMYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKR-QSTIALST 919
++ L Y+ S+ L+ YCDA + ST G L V+W+SK+ + I + +
Sbjct: 234 RSMCLKYRSGSQVALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPS 293
Query: 920 AEAEYISAA 928
EAEYI+A+
Sbjct: 294 TEAEYITAS 302
>M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810
(ORF240b)
Length = 240
Score = 155 bits (393), Expect = 4e-37
Identities = 76/222 (34%), Positives = 129/222 (57%), Gaps = 1/222 (0%)
Query: 715 IYVDDIIFGSANQSLCKEFYEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKE 774
+YVDDI+ ++ +L + + F M +G + YFLGIQ+ P G ++ Q+KY ++
Sbjct: 5 LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64
Query: 775 LLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRGTIGSLLYLTASRPDILFSVHL 834
+L ML+ TP+ P + + +R +G+L YLT +RPDI ++V++
Sbjct: 65 ILNNAGMLDCKPMSTPL-PLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNI 123
Query: 835 CARF*SDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYKLSGYCDADYAGDRTERKSTS 894
+ +P +KR+LRY+KGT GL K S+ + +CD+D+AG + R+ST+
Sbjct: 124 VCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTT 183
Query: 895 GNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLW 936
G C FLG N++SW++KRQ T++ S+ E EY + A+ + ++ W
Sbjct: 184 GFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>YJZ9_YEAST (P47100) Transposon Ty1 protein B
Length = 1755
Score = 115 bits (289), Expect = 5e-25
Identities = 128/522 (24%), Positives = 229/522 (43%), Gaps = 51/522 (9%)
Query: 531 QDKDWILAMEEELNQFSKNDVWSLV-----KKPESVHVIGTKWVFRNKLNEKGDVVRNKA 585
+ + +I A +E+NQ K W K+ + VI + ++F N+K D +KA
Sbjct: 1246 EKEKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFIF----NKKRDGT-HKA 1300
Query: 586 RLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQIDVKSAFLNGYISEEV 645
R VA+G Q + + A+ +S ++++N + Q+D+ SA+L I EE+
Sbjct: 1301 RFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEEL 1360
Query: 646 YVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFERGKVDTTLFCKT 705
Y+ PP D + +LKKSLYGLKQ+ WYE + S+L++ + G + +
Sbjct: 1361 YIRPPPHLGMN---DKLIRLKKSLYGLKQSGANWYETIKSYLIQ---QCGMEEVRGWSCV 1414
Query: 706 YKDDILIVQIYVDDIIFGSANQSLCKEFYEMMQAEFEMSMMGELKYFLGIQVDQTPEGTY 765
+K+ + + ++VDD++ S N + K E ++ +++ ++ + IQ D
Sbjct: 1415 FKNSQVTICLFVDDMVLFSKNLNSNKRIIEKLKMQYDTKIINLGESDEEIQYDILGLEIK 1474
Query: 766 IHQSKYTKELLKKFNMLESTVAK--TPMHP------------------TCILEKEDKSGK 805
+ KY K L N L + K P++P LE++D K
Sbjct: 1475 YQRGKYMK--LGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQELELEEDDYKMK 1532
Query: 806 V--CQKLYRGTIGSLLYLTAS-RPDILFSVHLCARF*SDPRETHLTAVKRILRYLKGTTN 862
V QKL IG Y+ R D+L+ ++ A+ P + L +++++ T +
Sbjct: 1533 VHEMQKL----IGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRD 1588
Query: 863 LGLMYKKTSEY----KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALS 918
L++ K+ KL DA Y G++ KS GN L ++ S + S S
Sbjct: 1589 KQLIWHKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTS 1647
Query: 919 TAEAEYISAAICSTQMLWMKH*LEDYQILESNIPIYCDNTAAIS-LSKNPILHSRAKHIE 977
T EAE + + + + + +++ + D+ + IS + N R +
Sbjct: 1648 TTEAEIHAISESVPLLNNLSYLIQELDKKPITKGLLTDSKSTISIIISNNEEKFRNRFFG 1707
Query: 978 VKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRFNFI 1019
K +RD V L + +++T AD+ TKPL F +
Sbjct: 1708 TKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLL 1749
Score = 93.2 bits (230), Expect = 3e-18
Identities = 120/538 (22%), Positives = 207/538 (38%), Gaps = 70/538 (13%)
Query: 13 LDSGCSRHMTGERRMFRELKLKPGGEVGFGGNEKGKIVGTGTICV---DSSPCIDNVLLV 69
LDSG SR + P V I G + D++ VL
Sbjct: 460 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 519
Query: 70 DGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKI--------RL 121
+ ++LLS+++LA F + + + DG+VL + + Y + +
Sbjct: 520 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLLPSNI 576
Query: 122 SELEAQNVKCLLSVNEEQWVW-HRRLGHASMRKISQLSKLNLVRGLP----NLKFASDAL 176
S NV S + + + HR L HA+ + I K N + + A D
Sbjct: 577 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQ 636
Query: 177 CEACQKDKFTK---VPFKAKNVVSTSRSLELLHIDLFGPVKTESIGGKRYGMVIVDDYSR 233
C C K TK + ++ + LH D+FGPV Y + D+ ++
Sbjct: 637 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 696
Query: 234 WTWVKFL--TRKDESHAVFSTFIAQVQNEKACRIVRVRSDHGGKFENDKFESLFDSYGIA 291
+ WV L R+D VF+T +A ++N+ ++ ++ D G ++ N + GI
Sbjct: 697 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 756
Query: 292 HDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRIS----- 346
++ + +GV ER NRTL + RT LQ +G+ H W A+ + ++N ++
Sbjct: 757 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 816
Query: 347 -------------VRPILNKTPYELWKNIKPNISYFHPFGCVCYVLNTK----------D 383
+ +L + + PN S HP G Y L+
Sbjct: 817 KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN-SKIHPRGIPGYALHPSRNSYGYIIYLP 875
Query: 384 RLHKFDAKSSKCLLLGYSERSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSKLVEKFADL 443
L K ++ +L G R F N DA T +E ++ S +++ DL
Sbjct: 876 SLKKTVDTTNYVILQGKESRLDQF---NYDALTFDEDLNRLTASYQSFIASNEIQQSDDL 932
Query: 444 SINVSDKGKAPEEVEPEED--------EPEEEAGPS----NSQTLKKSRITAAHPKEL 489
+I ++ E+ PE+ P + PS +S+ + K+ I A P+E+
Sbjct: 933 NIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRA--PREV 988
>YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B)
Length = 1770
Score = 115 bits (289), Expect = 5e-25
Identities = 112/388 (28%), Positives = 178/388 (45%), Gaps = 36/388 (9%)
Query: 72 LTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKI--------RLSE 123
+ ++LLS+S+LA++ F + + + + DG+VL + + Y + +S+
Sbjct: 518 IAYDLLSLSELANQNITACFTRNT---LERSDGTVLAPIVKHGDFYWLSKKYLIPSHISK 574
Query: 124 LEAQNVKCLLSVNEEQW-VWHRRLGHASMRKISQLSKLNLVRGLPNLKF----ASDALCE 178
L NV SVN+ + + HR LGHA+ R I + K N V L AS C
Sbjct: 575 LTINNVNKSKSVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCP 634
Query: 179 ACQKDKFTKVPFKAKNVVSTSRSLE---LLHIDLFGPVKTESIGGKRYGMVIVDDYSRWT 235
C K TK + + S E LH D+FGPV Y + D+ +R+
Sbjct: 635 DCLIGKSTKHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQ 694
Query: 236 WVKFL-TRKDESHA-VFSTFIAQVQNEKACRIVRVRSDHGGKFENDKFESLFDSYGIAHD 293
WV L R++ES VF++ +A ++N+ R++ ++ D G ++ N F + GI
Sbjct: 695 WVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITAC 754
Query: 294 FSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRISVRPILNK 353
++ + +GV ER NRTL RT+L +G+ H W AV + I+N + V P +K
Sbjct: 755 YTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSL-VSPKNDK 813
Query: 354 TPYELWKNIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGY----SERSKGFRF 409
+ + +I+ PFG V N H D+K + GY S S G+
Sbjct: 814 SARQHAGLAGLDITTILPFGQPVIVNN-----HNPDSKIHPRGIPGYALHPSRNSYGYII 868
Query: 410 YNTD-AKTIEESIHVRFDDKLDSDQSKL 436
Y KT++ + +V DK QSKL
Sbjct: 869 YLPSLKKTVDTTNYVILQDK----QSKL 892
Score = 112 bits (280), Expect = 5e-24
Identities = 131/566 (23%), Positives = 259/566 (45%), Gaps = 63/566 (11%)
Query: 496 EPVRTRSAFRPSEETLLSLKGLVSLIEPKSI---DEAL------QDKD-WILAMEEELNQ 545
EP R++ + ++KG+ S+ ++ DEA+ ++KD ++ A +E++Q
Sbjct: 1220 EPPRSKKRIN----LIAAIKGVKSIKPVRTTLRYDEAITYNKDNKEKDRYVEAYHKEISQ 1275
Query: 546 FSKNDVWSLVK-----KPESVHVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDY 600
K + W K + VI + ++F N+K D +KAR VA+G Q
Sbjct: 1276 LLKMNTWDTNKYYDRNDIDPKKVINSMFIF----NKKRDGT-HKARFVARGDIQHPDTYD 1330
Query: 601 TETFAPVARLEAIRLLISFSVNHNIVLHQIDVKSAFLNGYISEEVYVHQPP--GFEDEKK 658
++ + A+ +S +++++ + Q+D+ SA+L I EE+Y+ PP G D+
Sbjct: 1331 SDMQSNTVHHYALMTSLSIALDNDYYITQLDISSAYLYADIKEELYIRPPPHLGLNDK-- 1388
Query: 659 PDHVFKLKKSLYGLKQAPRAWYERLSSFLL---ENEFERGKVDTTLFCKTYKDDILIVQI 715
+ +L+KSLYGLKQ+ WYE + S+L+ + + RG + +K+ + + +
Sbjct: 1389 ---LLRLRKSLYGLKQSGANWYETIKSYLINCCDMQEVRG------WSCVFKNSQVTICL 1439
Query: 716 YVDDIIFGSANQSLCKEFYEMMQAEFEMSMM------GELKY-FLGIQVD-QTPEGTYIH 767
+VDD+I S + + K+ ++ +++ ++ E++Y LG+++ Q + +
Sbjct: 1440 FVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRSKYMKLG 1499
Query: 768 QSKYTKELLKKFNMLESTVAK---TPMHPTCILEKED---KSGKVCQKLY--RGTIGSLL 819
K E L K N+ + K P P +++++ + +K++ + IG
Sbjct: 1500 MEKSLTEKLPKLNVPLNPKGKKLRAPGQPGHYIDQDELEIDEDEYKEKVHEMQKLIGLAS 1559
Query: 820 YLTAS-RPDILFSVHLCARF*SDPRETHLTAVKRILRYLKGTTNLGLMYKKTS----EYK 874
Y+ R D+L+ ++ A+ P L +++++ T + L++ K + K
Sbjct: 1560 YVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTKPDNK 1619
Query: 875 LSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQM 934
L DA Y G++ KS GN L ++ S + S ST EAE + + +
Sbjct: 1620 LVAISDASY-GNQPYYKSQIGNIFLLNGKVIGGKSTKASLTCTSTTEAEIHAVSEAIPLL 1678
Query: 935 LWMKH*LEDYQILESNIPIYCDNTAAISLSKNPILHS-RAKHIEVKYHFIRDYVQKGVLL 993
+ H +++ + D+ + IS+ K+ R + K +RD V L
Sbjct: 1679 NNLSHLVQELNKKPIIKGLLTDSRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLY 1738
Query: 994 LKFVDTDHQWADIFTKPLAEDRFNFI 1019
+ +++T AD+ TKPL F +
Sbjct: 1739 VYYIETKKNIADVMTKPLPIKTFKLL 1764
>YMU0_YEAST (Q04670) Transposon Ty1 protein B
Length = 1328
Score = 115 bits (287), Expect = 8e-25
Identities = 128/527 (24%), Positives = 231/527 (43%), Gaps = 61/527 (11%)
Query: 531 QDKDWILAMEEELNQFSKNDVWSLV-----KKPESVHVIGTKWVFRNKLNEKGDVVRNKA 585
+ + +I A +E+NQ K W K+ + VI + ++F K + +KA
Sbjct: 819 EKEKYIQAYHKEVNQLLKMKTWDTDRYYDRKEIDPKRVINSMFIFNRKRDGT-----HKA 873
Query: 586 RLVAQGYSQQEGIDYTETFAPVARLE-----AIRLLISFSVNHNIVLHQIDVKSAFLNGY 640
R VA+G I + +T+ P + A+ +S ++++N + Q+D+ SA+L
Sbjct: 874 RFVARG-----DIQHPDTYDPGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYAD 928
Query: 641 ISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFERGKVDTT 700
I EE+Y+ PP D + +LKKSLYGLKQ+ WYE + S+L++ + G +
Sbjct: 929 IKEELYIRPPPHLGMN---DKLIRLKKSLYGLKQSGANWYETIKSYLIK---QCGMEEVR 982
Query: 701 LFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFYEMMQAEFEMSMMGELKYFLGIQVDQT 760
+ +K+ + + ++VDD+I S + + K+ ++ +++ ++ + IQ D
Sbjct: 983 GWSCVFKNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDIL 1042
Query: 761 PEGTYIHQSKYTKELLKKFNMLESTVAK--TPMHP------------------TCILEKE 800
+ KY K L N L + K P++P LE++
Sbjct: 1043 GLEIKYQRGKYMK--LGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQELELEED 1100
Query: 801 DKSGKV--CQKLYRGTIGSLLYLTAS-RPDILFSVHLCARF*SDPRETHLTAVKRILRYL 857
D KV QKL IG Y+ R D+L+ ++ A+ P + L +++++
Sbjct: 1101 DYKMKVHEMQKL----IGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFI 1156
Query: 858 KGTTNLGLMYKKTSEY----KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQS 913
T + L++ K+ KL DA Y G++ KS GN L ++ S + S
Sbjct: 1157 WNTRDKQLIWHKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKAS 1215
Query: 914 TIALSTAEAEYISAAICSTQMLWMKH*LEDYQILESNIPIYCDNTAAIS-LSKNPILHSR 972
ST EAE + + + + H +++ + D+ + IS + N R
Sbjct: 1216 LTCTSTTEAEIHAISESVPLLNNLSHLVQELNKKPITKGLLTDSKSTISIIISNNEEKFR 1275
Query: 973 AKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRFNFI 1019
+ K +RD V L + +++T AD+ TKPL F +
Sbjct: 1276 NRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLL 1322
Score = 93.2 bits (230), Expect = 3e-18
Identities = 120/538 (22%), Positives = 207/538 (38%), Gaps = 70/538 (13%)
Query: 13 LDSGCSRHMTGERRMFRELKLKPGGEVGFGGNEKGKIVGTGTICV---DSSPCIDNVLLV 69
LDSG SR + P V I G + D++ VL
Sbjct: 33 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 92
Query: 70 DGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKI--------RL 121
+ ++LLS+++LA F + + + DG+VL + + Y + +
Sbjct: 93 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLLPSNI 149
Query: 122 SELEAQNVKCLLSVNEEQWVW-HRRLGHASMRKISQLSKLNLVRGLP----NLKFASDAL 176
S NV S + + + HR L HA+ + I K N + + A D
Sbjct: 150 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQ 209
Query: 177 CEACQKDKFTK---VPFKAKNVVSTSRSLELLHIDLFGPVKTESIGGKRYGMVIVDDYSR 233
C C K TK + ++ + LH D+FGPV Y + D+ ++
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 269
Query: 234 WTWVKFL--TRKDESHAVFSTFIAQVQNEKACRIVRVRSDHGGKFENDKFESLFDSYGIA 291
+ WV L R+D VF+T +A ++N+ ++ ++ D G ++ N + GI
Sbjct: 270 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 329
Query: 292 HDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRIS----- 346
++ + +GV ER NRTL + RT LQ +G+ H W A+ + ++N ++
Sbjct: 330 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 389
Query: 347 -------------VRPILNKTPYELWKNIKPNISYFHPFGCVCYVLNTK----------D 383
+ +L + + PN S HP G Y L+
Sbjct: 390 KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN-SKIHPRGIPGYALHPSRNSYGYIIYLP 448
Query: 384 RLHKFDAKSSKCLLLGYSERSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSKLVEKFADL 443
L K ++ +L G R F N DA T +E ++ S +++ DL
Sbjct: 449 SLKKTVDTTNYVILQGKESRLDQF---NYDALTFDEDLNRLTASYQSFIASNEIQQSDDL 505
Query: 444 SINVSDKGKAPEEVEPEED--------EPEEEAGPS----NSQTLKKSRITAAHPKEL 489
+I ++ E+ PE+ P + PS +S+ + K+ I A P+E+
Sbjct: 506 NIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRA--PREV 561
>YME4_YEAST (Q04711) Transposon Ty1 protein B
Length = 1328
Score = 114 bits (284), Expect = 2e-24
Identities = 118/517 (22%), Positives = 232/517 (44%), Gaps = 41/517 (7%)
Query: 531 QDKDWILAMEEELNQFSKNDVWSLVK-----KPESVHVIGTKWVFRNKLNEKGDVVRNKA 585
+ + +I A +E+NQ K + W K + + VI + ++F K + +KA
Sbjct: 819 EKEKYIEAYHKEVNQLLKMNTWDTDKYYDRKEIDPKRVINSMFIFNRKRDGT-----HKA 873
Query: 586 RLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQIDVKSAFLNGYISEEV 645
R VA+G Q + + A+ +S ++++N + Q+D+ SA+L I EE+
Sbjct: 874 RFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEEL 933
Query: 646 YVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFERGKVDTTLFCKT 705
Y+ PP D + +LKKSLYGLKQ+ WYE + S+L++ + G + +
Sbjct: 934 YIRPPPHLGMN---DKLIRLKKSLYGLKQSGANWYETIKSYLIK---QCGMEEVRGWSCV 987
Query: 706 YKDDILIVQIYVDDIIFGSANQSLCKEFYEMMQAEFEMSMM------GELKY-FLGIQVD 758
+K+ + + ++VDD+I S + + K+ ++ +++ ++ E++Y LG+++
Sbjct: 988 FKNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEI- 1046
Query: 759 QTPEGTY--IHQSKYTKELLKKFNM---LESTVAKTPMHPTCILEKED---KSGKVCQKL 810
+ G Y + E + K N+ + P P +++++ + +K+
Sbjct: 1047 KYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKEKV 1106
Query: 811 Y--RGTIGSLLYLTAS-RPDILFSVHLCARF*SDPRETHLTAVKRILRYLKGTTNLGLMY 867
+ + IG Y+ R D+L+ ++ A+ P L +++++ T + L++
Sbjct: 1107 HEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIW 1166
Query: 868 KKTS----EYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAE 923
K + KL DA Y G++ KS GN L ++ S + S ST EAE
Sbjct: 1167 HKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAE 1225
Query: 924 YISAAICSTQMLWMKH*LEDYQILESNIPIYCDNTAAIS-LSKNPILHSRAKHIEVKYHF 982
+ + + + H +++ + D+ + IS + N R + K
Sbjct: 1226 IHAISESVPLLNNLSHLVQELNKKPITKGLLTDSKSTISIIISNNEEKFRNRFFGTKAMR 1285
Query: 983 IRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRFNFI 1019
+RD V L + +++T AD+ TKPL F +
Sbjct: 1286 LRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLL 1322
Score = 93.2 bits (230), Expect = 3e-18
Identities = 120/538 (22%), Positives = 207/538 (38%), Gaps = 70/538 (13%)
Query: 13 LDSGCSRHMTGERRMFRELKLKPGGEVGFGGNEKGKIVGTGTICV---DSSPCIDNVLLV 69
LDSG SR + P V I G + D++ VL
Sbjct: 33 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 92
Query: 70 DGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKI--------RL 121
+ ++LLS+++LA F + + + DG+VL + + Y + +
Sbjct: 93 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLLPSNI 149
Query: 122 SELEAQNVKCLLSVNEEQWVW-HRRLGHASMRKISQLSKLNLVRGLP----NLKFASDAL 176
S NV S + + + HR L HA+ + I K N + + A D
Sbjct: 150 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQ 209
Query: 177 CEACQKDKFTK---VPFKAKNVVSTSRSLELLHIDLFGPVKTESIGGKRYGMVIVDDYSR 233
C C K TK + ++ + LH D+FGPV Y + D+ ++
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 269
Query: 234 WTWVKFL--TRKDESHAVFSTFIAQVQNEKACRIVRVRSDHGGKFENDKFESLFDSYGIA 291
+ WV L R+D VF+T +A ++N+ ++ ++ D G ++ N + GI
Sbjct: 270 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 329
Query: 292 HDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRIS----- 346
++ + +GV ER NRTL + RT LQ +G+ H W A+ + ++N ++
Sbjct: 330 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 389
Query: 347 -------------VRPILNKTPYELWKNIKPNISYFHPFGCVCYVLNTK----------D 383
+ +L + + PN S HP G Y L+
Sbjct: 390 KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN-SKIHPRGIPGYALHPSRNSYGYIIYLP 448
Query: 384 RLHKFDAKSSKCLLLGYSERSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSKLVEKFADL 443
L K ++ +L G R F N DA T +E ++ S +++ DL
Sbjct: 449 SLKKTVDTTNYVILQGKESRLDQF---NYDALTFDEDLNRLTASYQSFIASNEIQQSDDL 505
Query: 444 SINVSDKGKAPEEVEPEED--------EPEEEAGPS----NSQTLKKSRITAAHPKEL 489
+I ++ E+ PE+ P + PS +S+ + K+ I A P+E+
Sbjct: 506 NIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRA--PREV 561
>YMD9_YEAST (Q03434) Transposon Ty1 protein B
Length = 1328
Score = 113 bits (282), Expect = 3e-24
Identities = 119/517 (23%), Positives = 234/517 (45%), Gaps = 41/517 (7%)
Query: 531 QDKDWILAMEEELNQFSKNDVWSLV-----KKPESVHVIGTKWVFRNKLNEKGDVVRNKA 585
+ + +I A +E+NQ K W K+ + VI + ++F N+K D +KA
Sbjct: 819 EKEKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFIF----NKKRDGT-HKA 873
Query: 586 RLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQIDVKSAFLNGYISEEV 645
R VA+G Q + + A+ +S ++++N + Q+D+ SA+L I EE+
Sbjct: 874 RFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEEL 933
Query: 646 YVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFERGKVDTTLFCKT 705
Y+ PP D + +LKKSLYGLKQ+ WYE + S+L++ + G + +
Sbjct: 934 YIRPPPHLGMN---DKLIRLKKSLYGLKQSGANWYETIKSYLIK---QCGMEEVRGWSCV 987
Query: 706 YKDDILIVQIYVDDIIFGSANQSLCKEFYEMMQAEFEMSMM------GELKY-FLGIQVD 758
+K+ + + ++VDD+I S + + K+ ++ +++ ++ E++Y LG+++
Sbjct: 988 FKNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEI- 1046
Query: 759 QTPEGTY--IHQSKYTKELLKKFNM---LESTVAKTPMHPTCILEKED---KSGKVCQKL 810
+ G Y + E + K N+ + P P +++++ + +K+
Sbjct: 1047 KYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKEKV 1106
Query: 811 Y--RGTIGSLLYLTAS-RPDILFSVHLCARF*SDPRETHLTAVKRILRYLKGTTNLGLMY 867
+ + IG Y+ R D+L+ ++ A+ P L +++++ T + L++
Sbjct: 1107 HEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIW 1166
Query: 868 KKTS----EYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAE 923
K + KL DA Y G++ KS GN L ++ S + S ST EAE
Sbjct: 1167 HKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAE 1225
Query: 924 YISAAICSTQMLWMKH*LEDYQILESNIPIYCDNTAAISLSKNPILHS-RAKHIEVKYHF 982
+ + + + + +++ + D+ + IS+ K+ R + K
Sbjct: 1226 IHAISESVPLLNNLSYLIQELNKKPIIKGLLTDSRSTISIIKSTNEEKFRNRFFGTKAMR 1285
Query: 983 IRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRFNFI 1019
+RD V L + +++T AD+ TKPL F +
Sbjct: 1286 LRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTFKLL 1322
Score = 93.2 bits (230), Expect = 3e-18
Identities = 120/538 (22%), Positives = 207/538 (38%), Gaps = 70/538 (13%)
Query: 13 LDSGCSRHMTGERRMFRELKLKPGGEVGFGGNEKGKIVGTGTICV---DSSPCIDNVLLV 69
LDSG SR + P V I G + D++ VL
Sbjct: 33 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 92
Query: 70 DGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKI--------RL 121
+ ++LLS+++LA F + + + DG+VL + + Y + +
Sbjct: 93 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLLPSNI 149
Query: 122 SELEAQNVKCLLSVNEEQWVW-HRRLGHASMRKISQLSKLNLVRGLP----NLKFASDAL 176
S NV S + + + HR L HA+ + I K N + + A D
Sbjct: 150 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDRSSAIDYQ 209
Query: 177 CEACQKDKFTK---VPFKAKNVVSTSRSLELLHIDLFGPVKTESIGGKRYGMVIVDDYSR 233
C C K TK + ++ + LH D+FGPV Y + D+ ++
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 269
Query: 234 WTWVKFL--TRKDESHAVFSTFIAQVQNEKACRIVRVRSDHGGKFENDKFESLFDSYGIA 291
+ WV L R+D VF+T +A ++N+ ++ ++ D G ++ N + GI
Sbjct: 270 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 329
Query: 292 HDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRIS----- 346
++ + +GV ER NRTL + RT LQ +G+ H W A+ + ++N ++
Sbjct: 330 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 389
Query: 347 -------------VRPILNKTPYELWKNIKPNISYFHPFGCVCYVLNTK----------D 383
+ +L + + PN S HP G Y L+
Sbjct: 390 KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN-SKIHPRGIPGYALHPSRNSYGYIIYLP 448
Query: 384 RLHKFDAKSSKCLLLGYSERSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSKLVEKFADL 443
L K ++ +L G R F N DA T +E ++ S +++ DL
Sbjct: 449 SLKKTVDTTNYVILQGKESRLDQF---NYDALTFDEDLNRLTASYQSFIASNEIQQSDDL 505
Query: 444 SINVSDKGKAPEEVEPEED--------EPEEEAGPS----NSQTLKKSRITAAHPKEL 489
+I ++ E+ PE+ P + PS +S+ + K+ I A P+E+
Sbjct: 506 NIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRA--PREV 561
>YMT5_YEAST (Q04214) Transposon Ty1 protein B
Length = 1328
Score = 112 bits (280), Expect = 5e-24
Identities = 124/522 (23%), Positives = 227/522 (42%), Gaps = 51/522 (9%)
Query: 531 QDKDWILAMEEELNQFSKNDVWSLVK-----KPESVHVIGTKWVFRNKLNEKGDVVRNKA 585
+ + +I A +E+NQ K W K + + VI + ++F K + +KA
Sbjct: 819 EKEKYIEAYHKEVNQLLKMKTWDTDKYYDRKEIDPKRVINSMFIFNRKRDGT-----HKA 873
Query: 586 RLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQIDVKSAFLNGYISEEV 645
R VA+G Q + + A+ +S ++++N + Q+D+ SA+L I EE+
Sbjct: 874 RFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEEL 933
Query: 646 YVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFERGKVDTTLFCKT 705
Y+ PP D + +LKKSLYGLKQ+ WYE + S+L++ + G + +
Sbjct: 934 YIRPPPHLGMN---DKLIRLKKSLYGLKQSGANWYETIKSYLIK---QCGMEEVRGWSCV 987
Query: 706 YKDDILIVQIYVDDIIFGSANQSLCKEFYEMMQAEFEMSMMGELKYFLGIQVDQTPEGTY 765
+++ + + ++VDD++ S N + K + ++ +++ ++ + IQ D
Sbjct: 988 FENSQVTICLFVDDMVLFSKNLNSNKRIIDKLKMQYDTKIINLGESDEEIQYDILGLEIK 1047
Query: 766 IHQSKYTKELLKKFNMLESTVAK--TPMHP------------------TCILEKEDKSGK 805
+ KY K L N L + K P++P LE++D K
Sbjct: 1048 YQRGKYMK--LGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQELELEEDDYKMK 1105
Query: 806 V--CQKLYRGTIGSLLYLTAS-RPDILFSVHLCARF*SDPRETHLTAVKRILRYLKGTTN 862
V QKL IG Y+ R D+L+ ++ A+ P + L +++++ T +
Sbjct: 1106 VHEMQKL----IGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRD 1161
Query: 863 LGLMYKKTSEY----KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALS 918
L++ K+ KL DA Y G++ KS GN L ++ S + S S
Sbjct: 1162 KQLIWHKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTS 1220
Query: 919 TAEAEYISAAICSTQMLWMKH*LEDYQILESNIPIYCDNTAAIS-LSKNPILHSRAKHIE 977
T EAE + + + + + +++ + D+ + IS + N R +
Sbjct: 1221 TTEAEIHAISESVPLLNNLSYLIQELDKKPITKGLLTDSKSTISIIISNNEEKFRNRFFG 1280
Query: 978 VKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRFNFI 1019
K +RD V L + +++T AD+ TKPL F +
Sbjct: 1281 TKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLL 1322
Score = 92.4 bits (228), Expect = 5e-18
Identities = 102/438 (23%), Positives = 175/438 (39%), Gaps = 27/438 (6%)
Query: 13 LDSGCSRHMTGERRMFRELKLKPGGEVGFGGNEKGKIVGTGTICV---DSSPCIDNVLLV 69
LDSG SR + P V I G + D++ VL
Sbjct: 33 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 92
Query: 70 DGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKI--------RL 121
+ ++LLS+++LA F + + + DG+VL + + Y + +
Sbjct: 93 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLLPSNI 149
Query: 122 SELEAQNVKCLLSVNEEQWVW-HRRLGHASMRKISQLSKLNLVRGLP----NLKFASDAL 176
S NV S + + + HR L HA+ + I K N + + A D
Sbjct: 150 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQ 209
Query: 177 CEACQKDKFTK---VPFKAKNVVSTSRSLELLHIDLFGPVKTESIGGKRYGMVIVDDYSR 233
C C K TK + ++ + LH D+FGPV Y + D+ ++
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 269
Query: 234 WTWVKFL--TRKDESHAVFSTFIAQVQNEKACRIVRVRSDHGGKFENDKFESLFDSYGIA 291
+ WV L R+D VF+T +A ++N+ ++ ++ D G ++ N + GI
Sbjct: 270 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 329
Query: 292 HDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRISVRPIL 351
++ + +GV ER NRTL + RT LQ +G+ H W A+ + ++N ++ P
Sbjct: 330 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLA-SPKS 388
Query: 352 NKTPYELWKNIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSERSKGFRFYN 411
K+ + +IS PFG ++N + K + L S S G+ Y
Sbjct: 389 KKSARQHAGLAGLDISTLLPFG-QPVIVNDHNPNSKIHPRGIPGYALHPSRNSYGYIIYL 447
Query: 412 TD-AKTIEESIHVRFDDK 428
KT++ + +V K
Sbjct: 448 PSLKKTVDTTNYVILQGK 465
>YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein
Length = 1803
Score = 111 bits (278), Expect = 9e-24
Identities = 144/614 (23%), Positives = 267/614 (43%), Gaps = 94/614 (15%)
Query: 449 DKGKAPEEVEPEEDEPEEEAG-----PSNSQTLKKSRITAAHPKELIMGNKDEPVRTRSA 503
DK + E E D+ + P N +T+ +I A + E I N D ++ +
Sbjct: 1231 DKNNSLTSYELERDKKRSKKNRVKLIPDNMETVSAPKIRAIYYNEAISKNPD--LKEKHE 1288
Query: 504 FRPSEETLLSLKGLVSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPESVHV 563
++ + K L +L + K D ++ +S++++ P+++ +
Sbjct: 1289 YKQAYH-----KELQNLKDMKVFDVDVK--------------YSRSEI------PDNL-I 1322
Query: 564 IGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNH 623
+ T +F K N KAR+V +G +Q Y+ I++ + + N
Sbjct: 1323 VPTNTIFTKKRNGI-----YKARIVCRGDTQSPDT-YSVITTESLNHNHIKIFLMIANNR 1376
Query: 624 NIVLHQIDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERL 683
N+ + +D+ AFL + EE+Y+ P D + V KL K+LYGLKQ+P+ W + L
Sbjct: 1377 NMFMKTLDINHAFLYAKLEEEIYIPHP---HDRRC---VVKLNKALYGLKQSPKEWNDHL 1430
Query: 684 SSFL-----LENEFERGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFYEMMQ 738
+L +N + G T +D L++ +YVDD + ++N+ EF ++
Sbjct: 1431 RQYLNGIGLKDNSYTPGLYQT-------EDKNLMIAVYVDDCVIAASNEQRLDEFINKLK 1483
Query: 739 AEFEMSMMGEL------KYFLGIQ---------VDQTPEGTYIHQ--SKYTKEL--LKKF 779
+ FE+ + G L LG+ +D T + ++I++ KY +EL ++K
Sbjct: 1484 SNFELKITGTLIDDVLDTDILGMDLVYNKRLGTIDLTLK-SFINRMDKKYNEELKKIRKS 1542
Query: 780 NMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRGTIGSLLYLT-ASRPDILFSVHLCARF 838
++ + K + E++ + KL + +G L Y+ R DI F+V AR
Sbjct: 1543 SIPHMSTYKIDPKKDVLQMSEEEFRQGVLKLQQ-LLGELNYVRHKCRYDIEFAVKKVARL 1601
Query: 839 *SDPRETHLTAVKRILRYLKGTTNLGLMYKK--TSEYKLSGYCDADYAGDRTERKSTSGN 896
+ P E + +I++YL ++G+ Y + + K+ DA G + +S G
Sbjct: 1602 VNYPHERVFYMIYKIIQYLVRYKDIGIHYDRDCNKDKKVIAITDAS-VGSEYDAQSRIGV 1660
Query: 897 CQFLGSNLVSWASKRQSTIALSTAEAE----YISAAICSTQMLWMKH*LEDYQILESNIP 952
+ G N+ + S + + +S+ EAE Y A T + +K E ++I
Sbjct: 1661 ILWYGMNIFNVYSNKSTNRCVSSTEAELHAIYEGYADSETLKVTLKELGEGD---NNDIV 1717
Query: 953 IYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYV-QKGVLLLKFVDTDHQWADIFTKPL 1011
+ D+ AI + K +K I++ + +K + LLK + AD+ TKP+
Sbjct: 1718 MITDSKPAIQGLNRSYQQPKEKFTWIKTEIIKEKIKEKSIKLLKITGKGN-IADLLTKPV 1776
Query: 1012 AED---RFNFILKN 1022
+ RF +LKN
Sbjct: 1777 SASDFKRFIQVLKN 1790
Score = 86.7 bits (213), Expect = 3e-16
Identities = 72/276 (26%), Positives = 125/276 (45%), Gaps = 11/276 (3%)
Query: 143 HRRLGHASMRKISQLSKLN-LVRGLPNLKFASDALCEACQKDKFTKVPFKAKNVVSTSRS 201
H+R+GH +++I K N L +K ++ C+ C+ K TK ++ + S
Sbjct: 562 HKRMGHTGIQQIENSIKHNHYEESLDLIKEPNEFWCQTCKISKATKRNHYTGSMNNHSTD 621
Query: 202 LE---LLHIDLFGPVKTESIGGKRYGMVIVDDYSRW--TWVKFLTRKDESHAVFSTFIAQ 256
E +D+FGPV + + KRY +++VD+ +R+ T F + A I
Sbjct: 622 HEPGSSWCMDIFGPVSSSNADTKRYMLIMVDNNTRYCMTSTHFNKNAETILAQVRKNIQY 681
Query: 257 VQNEKACRIVRVRSDHGGKFENDKFESLFDSYGIAHDFSCPRTPQQNGVVERKNRTLQEM 316
V+ + ++ + SD G +F ND+ E F S GI H + + NG ER RT+
Sbjct: 682 VETQFDRKVREINSDRGTEFTNDQIEEYFISKGIHHILTSTQDHAANGRAERYIRTIITD 741
Query: 317 ARTMLQETGMAKHFWAEAVNTACYIQNRISVRPILNKTPYELWKN--IKPNISYFHPFGC 374
A T+L+++ + FW AV +A I+N + + K P + + + F PFG
Sbjct: 742 ATTLLRQSNLRVKFWEYAVTSATNIRNYLEHKS-TGKLPLKAISRQPVTVRLMSFLPFGE 800
Query: 375 VCYVLNTKDRLHKFDAKSSKCLLLGYSERSKGFRFY 410
+ N + K ++L S G++F+
Sbjct: 801 KGIIWNHNHK--KLKPSGLPSIILCKDPNSYGYKFF 834
>YJZ7_YEAST (P47098) Transposon Ty1 protein B
Length = 1755
Score = 111 bits (277), Expect = 1e-23
Identities = 119/517 (23%), Positives = 233/517 (45%), Gaps = 41/517 (7%)
Query: 531 QDKDWILAMEEELNQFSKNDVWSLV-----KKPESVHVIGTKWVFRNKLNEKGDVVRNKA 585
+ + +I A +E+NQ K W K+ + VI + ++F N+K D +KA
Sbjct: 1246 EKEKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFIF----NKKRDGT-HKA 1300
Query: 586 RLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQIDVKSAFLNGYISEEV 645
R VA+G Q T + A+ +S ++++N + Q+D+ SA+L I EE+
Sbjct: 1301 RFVARGDIQHPDTYDTGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEEL 1360
Query: 646 YVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFERGKVDTTLFCKT 705
Y+ PP D + +LKKS YGLKQ+ WYE + S+L++ + G + +
Sbjct: 1361 YIRPPPHLGMN---DKLIRLKKSHYGLKQSGANWYETIKSYLIK---QCGMEEVRGWSCV 1414
Query: 706 YKDDILIVQIYVDDIIFGSANQSLCKEFYEMMQAEFEMSMM------GELKY-FLGIQVD 758
+K+ + + ++VDD+I S + + K+ ++ +++ ++ E++Y LG+++
Sbjct: 1415 FKNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEI- 1473
Query: 759 QTPEGTY--IHQSKYTKELLKKFNM---LESTVAKTPMHPTCILEKED---KSGKVCQKL 810
+ G Y + E + K N+ + P P +++++ + +K+
Sbjct: 1474 KYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKEKV 1533
Query: 811 Y--RGTIGSLLYLTAS-RPDILFSVHLCARF*SDPRETHLTAVKRILRYLKGTTNLGLMY 867
+ + IG Y+ R D+L+ ++ A+ P L +++++ T + L++
Sbjct: 1534 HEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIW 1593
Query: 868 KKTS----EYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAE 923
K + KL DA Y G++ KS GN L ++ S + S ST EAE
Sbjct: 1594 HKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNIFLLNGKVIGGKSTKASLTCTSTTEAE 1652
Query: 924 YISAAICSTQMLWMKH*LEDYQILESNIPIYCDNTAAISLSKNPILHS-RAKHIEVKYHF 982
+ + + + + +++ + D+ + IS+ K+ R + K
Sbjct: 1653 IHAISESVPLLNNLSYLIQELNKKPIIKGLLTDSRSTISIIKSTNEEKFRNRFFGTKAMR 1712
Query: 983 IRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRFNFI 1019
+RD V L + +++T AD+ TKPL F +
Sbjct: 1713 LRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTFKLL 1749
Score = 92.8 bits (229), Expect = 4e-18
Identities = 120/538 (22%), Positives = 207/538 (38%), Gaps = 70/538 (13%)
Query: 13 LDSGCSRHMTGERRMFRELKLKPGGEVGFGGNEKGKIVGTGTICV---DSSPCIDNVLLV 69
LDSG SR + P V I G + D++ VL
Sbjct: 460 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 519
Query: 70 DGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKI--------RL 121
+ ++LLS+++LA F + + + DG+VL + + Y + +
Sbjct: 520 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVQYGDFYWVSKRYLLPSNI 576
Query: 122 SELEAQNVKCLLSVNEEQWVW-HRRLGHASMRKISQLSKLNLVRGLP----NLKFASDAL 176
S NV S + + + HR L HA+ + I K N + + A D
Sbjct: 577 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQ 636
Query: 177 CEACQKDKFTK---VPFKAKNVVSTSRSLELLHIDLFGPVKTESIGGKRYGMVIVDDYSR 233
C C K TK + ++ + LH D+FGPV Y + D+ ++
Sbjct: 637 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 696
Query: 234 WTWVKFL--TRKDESHAVFSTFIAQVQNEKACRIVRVRSDHGGKFENDKFESLFDSYGIA 291
+ WV L R+D VF+T +A ++N+ ++ ++ D G ++ N + GI
Sbjct: 697 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 756
Query: 292 HDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRIS----- 346
++ + +GV ER NRTL + RT LQ +G+ H W A+ + ++N ++
Sbjct: 757 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 816
Query: 347 -------------VRPILNKTPYELWKNIKPNISYFHPFGCVCYVLNTK----------D 383
+ +L + + PN S HP G Y L+
Sbjct: 817 KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN-SKIHPRGIPGYALHPSRNSYGYIIYLP 875
Query: 384 RLHKFDAKSSKCLLLGYSERSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSKLVEKFADL 443
L K ++ +L G R F N DA T +E ++ S +++ DL
Sbjct: 876 SLKKTVDTTNYVILQGKESRLDQF---NYDALTFDEDLNRLTASYQSFIASNEIQESNDL 932
Query: 444 SINVSDKGKAPEEVEPEED--------EPEEEAGPS----NSQTLKKSRITAAHPKEL 489
+I ++ E+ PE+ P + PS +S+ + K+ I A P+E+
Sbjct: 933 NIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRA--PREV 988
>M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820
(ORF170)
Length = 170
Score = 99.0 bits (245), Expect = 6e-20
Identities = 46/97 (47%), Positives = 67/97 (68%)
Query: 522 EPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPESVHVIGTKWVFRNKLNEKGDVV 581
EPKS+ AL+D W AM+EEL+ S+N W LV P + +++G KWVF+ KL+ G +
Sbjct: 27 EPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLD 86
Query: 582 RNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLIS 618
R KARLVA+G+ Q+EGI + ET++PV R IR +++
Sbjct: 87 RLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILN 123
>M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240
(ORF111a)
Length = 111
Score = 67.8 bits (164), Expect = 1e-10
Identities = 31/82 (37%), Positives = 50/82 (60%)
Query: 819 LYLTASRPDILFSVHLCARF*SDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYKLSGY 878
+YLT +RPD+ F+V+ ++F S R + AV ++L Y+KGT GL Y TS+ +L +
Sbjct: 1 MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60
Query: 879 CDADYAGDRTERKSTSGNCQFL 900
D+D+A R+S +G C +
Sbjct: 61 ADSDWASCPDTRRSVTGFCSLV 82
>POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1189
Score = 58.9 bits (141), Expect = 7e-08
Identities = 69/276 (25%), Positives = 115/276 (41%), Gaps = 19/276 (6%)
Query: 92 NQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELEAQNVKCLLSVNEEQWVWHRRLGHASM 151
+Q+ RA+ + N +++ KI L + EA L++ ++ W LG+ +
Sbjct: 806 DQEEARAIGATENKDTRNWEKEG---KIVLPQKEA------LAMIQQMHAW-THLGNRKL 855
Query: 152 RKISQLSKLNLVRGLPNLKFASDALCEACQKDKFTKVPFKAKNVVSTSRSLELLHIDLFG 211
+ + + + + R ++ + A C+ CQ+ A +R ID F
Sbjct: 856 KLLIEKTDFLIPRASTLIEQVTSA-CKVCQQVNAGATRVPAGKRTRGNRPGVYWEID-FT 913
Query: 212 PVKTESIGGKRYGMVIVDDYSRWTWVKFLTRKDESHAVFSTFIAQVQNEKACRIVRVRSD 271
VK G K Y +V VD +S W F TR++ +H V + ++ V + SD
Sbjct: 914 EVKPHYAGYK-YLLVFVDTFSGWVEA-FPTRQETAHIVAKKILEEIFPRFGLPKV-IGSD 970
Query: 272 HGGKFENDKFESLFDSYGIAHDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFW 331
+G F + + L GI C PQ +G VER NRT++E + ETG+ W
Sbjct: 971 NGPAFVSQVSQGLARILGINWKLHCAYRPQSSGQVERMNRTIKETLTKLTLETGLKD--W 1028
Query: 332 AEAVNTACYIQNRISVRPILNKTPYELWKNIKPNIS 367
++ A R TPYE+ P +S
Sbjct: 1029 RRLLSLALLRARNTPNR--FGLTPYEILYGGPPPLS 1062
>M710_ARATH (P92512) Hypothetical mitochondrial protein AtMg00710
(ORF120)
Length = 120
Score = 57.8 bits (138), Expect = 1e-07
Identities = 30/69 (43%), Positives = 38/69 (54%)
Query: 310 NRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRISVRPILNKTPYELWKNIKPNISYF 369
NRT+ E R+ML E G+ K F A+A NTA +I N+ I P E+W P SY
Sbjct: 2 NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61
Query: 370 HPFGCVCYV 378
FGCV Y+
Sbjct: 62 RRFGCVAYI 70
>POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1196
Score = 55.1 bits (131), Expect = 1e-06
Identities = 62/231 (26%), Positives = 97/231 (41%), Gaps = 14/231 (6%)
Query: 145 RLGHASMRKISQL-----SKLNLVRGLPNLKFASDALCEACQKDKFTKVPFKAKNVVSTS 199
RL H +K+ L S ++ L++ +D+ C C + +K A V
Sbjct: 849 RLTHLGYQKMKALLDRGESPYYMLNRDKTLQYVADS-CTVCAQVNASKAKIGAGVRVRGH 907
Query: 200 RSLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLTRKDESHAVFSTFIAQVQN 259
R ID F VK + G +Y +V VD +S W F T+++ + V + ++
Sbjct: 908 RPGSHWEID-FTEVKP-GLYGYKYLLVFVDTFSGWVEA-FPTKRETARVVSKKLLEEIFP 964
Query: 260 EKACRIVRVRSDHGGKFENDKFESLFDSYGIAHDFSCPRTPQQNGVVERKNRTLQEMART 319
V + SD+G F + +S+ D GI C PQ +G VER NRT++E
Sbjct: 965 RFGMPQV-LGSDNGPAFTSQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTK 1023
Query: 320 MLQETGMAKHFWAEAVNTACYIQNRISVRPILNKTPYELWKNIKPNISYFH 370
+ G W + A Y + R + P TPYE+ P + FH
Sbjct: 1024 LTLAAGTRD--WVLLLPLALY-RARNTPGP-HGLTPYEILYGAPPPLVNFH 1070
>POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 1046
Score = 54.7 bits (130), Expect = 1e-06
Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 6/148 (4%)
Query: 220 GKRYGMVIVDDYSRWTWVKFLTRKDESHAVFSTFIAQVQNEKACRIVRVRSDHGGKFEND 279
G +Y +V VD +S W + TR++ +H V + ++ V + SD+G F +
Sbjct: 778 GYKYLLVFVDTFSGWVEA-YPTRQETAHMVAKKILEEIFPRFGLPKV-IGSDNGPAFVSQ 835
Query: 280 KFESLFDSYGIAHDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWAEAVNTAC 339
+ L + GI C PQ +G VER NRT++E + ETG+ W ++ A
Sbjct: 836 VSQGLARTLGINWKLHCAYRPQSSGQVERMNRTIKETLTKLTLETGLKD--WRRLLSLAL 893
Query: 340 YIQNRISVRPILNKTPYELWKNIKPNIS 367
R TPYE+ P +S
Sbjct: 894 LRARNTPNR--FGLTPYEILYGGPPPLS 919
>POL3_MOUSE (P11367) Retrovirus-related Pol polyprotein
(Endonuclease) (Fragment)
Length = 390
Score = 52.4 bits (124), Expect = 6e-06
Identities = 54/194 (27%), Positives = 83/194 (41%), Gaps = 8/194 (4%)
Query: 177 CEACQKDKFTKVPFKAKNVVSTSRSLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTW 236
C+AC + +K +A V R ID F VK + G +Y +V VD +S W
Sbjct: 94 CQACVQVNASKTKIRAGTRVRGHRLGTHWEID-FTEVKP-GLYGYKYLLVFVDTFSGWVE 151
Query: 237 VKFLTRKDESHAVFSTFIAQVQNEKACRIVRVRSDHGGKFENDKFESLFDSYGIAHDFSC 296
F T+ + + V + ++ V + +D+G F + +S+ GI C
Sbjct: 152 A-FPTKHETAKIVTKKLLEEIFPRFGMPQV-LGTDNGPAFVSQVSQSVAKLLGIDWKLHC 209
Query: 297 PRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRISVRPILNKTPY 356
PQ +G VER NRT++E + TG W + A Y + R + P TPY
Sbjct: 210 AYRPQSSGQVERMNRTIKETLTKLTLATGTRD--WVLLLPLALY-RARNTPGP-HGLTPY 265
Query: 357 ELWKNIKPNISYFH 370
E+ P + FH
Sbjct: 266 EILYGAPPPLVNFH 279
>POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1199
Score = 51.6 bits (122), Expect = 1e-05
Identities = 62/233 (26%), Positives = 97/233 (41%), Gaps = 20/233 (8%)
Query: 145 RLGHASMRKISQLSK--------LNLVRGLPNLKFASDALCEACQKDKFTKVPFKAKNVV 196
+L H S K+ L + LN R L N+ C+AC + +K K V
Sbjct: 849 QLTHLSFSKMKALLERSHSPYYMLNRDRTLKNIT----ETCKACAQVNASKSAVKQGTRV 904
Query: 197 STSRSLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLTRKDESHAVFSTFIAQ 256
R ID F +K + G +Y +V +D +S W F T+K+ + V + +
Sbjct: 905 RGHRPGTHWEID-FTEIKP-GLYGYKYLLVFIDTFSGWIEA-FPTKKETAKVVTKKLLEE 961
Query: 257 VQNEKACRIVRVRSDHGGKFENDKFESLFDSYGIAHDFSCPRTPQQNGVVERKNRTLQEM 316
+ V + +D+G F + +++ D GI C PQ +G VER NRT++E
Sbjct: 962 IFPRFGMPQV-LGTDNGPAFVSKVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKET 1020
Query: 317 ARTMLQETGMAKHFWAEAVNTACYIQNRISVRPILNKTPYELWKNIKPNISYF 369
+ TG W + A Y + R + P TPYE+ P + F
Sbjct: 1021 LTKLTLATG--SRDWVLLLPLALY-RARNTPGP-HGLTPYEILYGAPPPLVNF 1069
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.320 0.136 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,650,556
Number of Sequences: 164201
Number of extensions: 5231081
Number of successful extensions: 14994
Number of sequences better than 10.0: 147
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 14686
Number of HSP's gapped (non-prelim): 237
length of query: 1032
length of database: 59,974,054
effective HSP length: 120
effective length of query: 912
effective length of database: 40,269,934
effective search space: 36726179808
effective search space used: 36726179808
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 71 (32.0 bits)
Lotus: description of TM0177.6