BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0176a.1
         (440 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CDC4_CANAL (P53699) Cell division control protein 4                    36  0.22
RCEM_ROSDE (P26279) Reaction center protein M chain (Photosynthe...    35  0.50
FX17_MOUSE (Q9QZM8) F-box only protein 17 (F-box only protein 26)      35  0.50
LYST_HUMAN (Q99698) Lysosomal trafficking regulator (Beige homolog)    34  0.65
UFO_ARATH (Q39090) UNUSUAL FLORAL ORGANS protein                       33  1.1
FX22_HUMAN (Q8NEZ5) F-box only protein 22 (F-box protein FBX22p44)     33  1.1
POFA_SCHPO (Q9P7W4) F-box/WD-repeat protein pof10 (Skp1-binding ...    33  1.9
FX17_HUMAN (Q96EF6) F-box only protein 17 (F-box only protein 26)      32  4.2
FXLC_HUMAN (Q9NXK8) F-box/LRR-repeat protein 12 (F-box and leuci...    31  7.2
YKK7_CAEEL (P34284) Hypothetical F-box/LRR-repeat protein C02F5....    30  9.5
FXLA_MOUSE (Q6P1G2) F-box/LRR-repeat protein 10 (F-box and leuci...    30  9.5

>CDC4_CANAL (P53699) Cell division control protein 4
          Length = 684

 Score = 35.8 bits (81), Expect = 0.22
 Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 13/77 (16%)

Query: 4   NSNNTVTVLSMNTPHP-----DNLPRTQLHNDLIAEV--------LSWLPVKSLTRLKCV 50
           N N+ V  L   T  P     +NL    L  D+++ V        LS+L  K+L  +  V
Sbjct: 182 NQNHLVFKLLQKTTRPTLSTFNNLINNSLKRDILSNVPFEVTMKILSYLDYKTLLSVAQV 241

Query: 51  CKSWNSLIISDQTFIKL 67
           CK W  +I +  T+IKL
Sbjct: 242 CKKWFDIINNPDTWIKL 258


>RCEM_ROSDE (P26279) Reaction center protein M chain (Photosynthetic
           reaction center M subunit)
          Length = 330

 Score = 34.7 bits (78), Expect = 0.50
 Identities = 24/83 (28%), Positives = 40/83 (47%), Gaps = 11/83 (13%)

Query: 337 WTQLLKVRYQDLQREPLH--SMFYCHYQLFPLCLHDGDTLILASYSDRYDGNEAI--LYD 392
           WT    +RY +L   P H  S+ + +  +   C+H G  L +     RY G+  +  +YD
Sbjct: 188 WTTAFSIRYGNLYYNPFHCLSIVFLYGSVLLFCMHGGTILAVT----RYGGDRELEQIYD 243

Query: 393 KRANTAERTALETESKYILGFSS 415
            R    ER AL    ++ +GF++
Sbjct: 244 -RGTATERAALFW--RWTMGFNA 263


>FX17_MOUSE (Q9QZM8) F-box only protein 17 (F-box only protein 26)
          Length = 286

 Score = 34.7 bits (78), Expect = 0.50
 Identities = 26/87 (29%), Positives = 43/87 (48%), Gaps = 13/87 (14%)

Query: 22  LPRTQLHNDLIAEVLSWLPVKSL-TRLKCVCKSWNSLIISDQTF-IKLHLHRSALHGKPH 79
           L  T+L  +L+ +VLS +P ++L TR + VC++W  L+     + ++L   RSA     +
Sbjct: 16  LALTKLPPELLVQVLSHVPPRALVTRCRPVCRAWRDLVDGPSIWLLQLARDRSAEGRALY 75

Query: 80  LLLQR-----------ENSHHDHREFC 95
            L QR           + + HD   FC
Sbjct: 76  ALAQRCPADADADADADGNRHDEFPFC 102


>LYST_HUMAN (Q99698) Lysosomal trafficking regulator (Beige homolog)
          Length = 3801

 Score = 34.3 bits (77), Expect = 0.65
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 8/103 (7%)

Query: 39  LPVKSLTRLKCVCKSWNSLIISDQTFIKLHLHRSALHGKPHLLLQRENSHHDHREFCVTH 98
           +P ++   LK +  S   ++ + +      LH S    K H   +  +  H HR+     
Sbjct: 461 VPPEASEHLKALINSVMKIMSTVKKVKSEQLHHSMCTRKRHRRCEYSHFMHHHRD----- 515

Query: 99  LSGSSLSLVENPWISLAHNPRYRLKKGDRYHVVGCCNGLICLH 141
           LSG  +S  +N    ++ NP      GD Y+   CC   +C H
Sbjct: 516 LSGLLVSAFKN---QVSKNPFEETADGDVYYPERCCCIAVCAH 555


>UFO_ARATH (Q39090) UNUSUAL FLORAL ORGANS protein
          Length = 442

 Score = 33.5 bits (75), Expect = 1.1
 Identities = 22/71 (30%), Positives = 39/71 (53%), Gaps = 6/71 (8%)

Query: 4  NSNNTVTVLSMNTPHP-----DNLPRTQLHNDLIAEVLSWLPVKSLTRLKCVCKSWNSLI 58
          +S+N+ T  S  T        D    ++L   L+  V+++LP  +  R +CVCK + SL+
Sbjct: 22 SSSNSSTTTSTTTDSSSGQWMDGRIWSKLPPPLLDRVIAFLPPPAFFRTRCVCKRFYSLL 81

Query: 59 ISDQTFIKLHL 69
           S+ TF++ +L
Sbjct: 82 FSN-TFLETYL 91


>FX22_HUMAN (Q8NEZ5) F-box only protein 22 (F-box protein
          FBX22p44)
          Length = 403

 Score = 33.5 bits (75), Expect = 1.1
 Identities = 11/29 (37%), Positives = 20/29 (68%)

Query: 30 DLIAEVLSWLPVKSLTRLKCVCKSWNSLI 58
          +++  VL++LP K+L R+ CVC+ W   +
Sbjct: 28 EVVERVLTFLPAKALLRVACVCRLWRECV 56


>POFA_SCHPO (Q9P7W4) F-box/WD-repeat protein pof10 (Skp1-binding
          protein 2)
          Length = 662

 Score = 32.7 bits (73), Expect = 1.9
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 14 MNTPHP-DNLPRTQLH--NDLIAEVLSWLPVKSLTRLKCVCKSWNSLIISDQTFIKLHLH 70
          MN  H  +N  RT L+   +++  + S+L  +SL   +C CK W  L+  D ++     H
Sbjct: 18 MNRDHSSNNTNRTVLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRTAFFH 77

Query: 71 RSA 73
            A
Sbjct: 78 HFA 80


>FX17_HUMAN (Q96EF6) F-box only protein 17 (F-box only protein 26)
          Length = 278

 Score = 31.6 bits (70), Expect = 4.2
 Identities = 25/81 (30%), Positives = 42/81 (50%), Gaps = 3/81 (3%)

Query: 17 PHPDNLPRTQLHNDLIAEVLSWLPVKSL-TRLKCVCKSWNSLIISDQTF-IKLHLHRSAL 74
          P   +L    L  +L+ +VLS +P +SL TR + VC++W  ++     + ++L   RSA 
Sbjct: 11 PADPSLALDALPPELLVQVLSHVPPRSLVTRCRPVCRAWRDIVDGPTVWLLQLARDRSAE 70

Query: 75 HGKPHLLLQR-ENSHHDHREF 94
              + + QR   S+ D  EF
Sbjct: 71 GRALYAVAQRCLPSNEDKEEF 91


>FXLC_HUMAN (Q9NXK8) F-box/LRR-repeat protein 12 (F-box and
          leucine-rich repeat protein 12) (F-box protein FBL12)
          Length = 326

 Score = 30.8 bits (68), Expect = 7.2
 Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 26 QLHNDLIAEVLSWLPVKSLTRLKCVCKSWNSLIISDQTFIKLHLHRSALHGKPHLL 81
          +L + ++ E+ S+LPV+   R+  VC  W  L+  D  ++  H+  +    +P ++
Sbjct: 6  ELPDSVLLEIFSYLPVRDRIRISRVCHRWKRLV--DDRWLWRHVDLTLYTMRPKVM 59


>YKK7_CAEEL (P34284) Hypothetical F-box/LRR-repeat protein C02F5.7
           in chromosome III
          Length = 461

 Score = 30.4 bits (67), Expect = 9.5
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 6   NNTVTVLSMNTPHPDN-LPRTQLHNDLIAEVLSWLPVKSLTRLKCVCKSWNSLIISDQTF 64
           N    + +++    DN L    L  +++ +V S+L  K+L R   VC+SW+ L +    +
Sbjct: 38  NQMYLITTLSPAQVDNSLINRVLPKEVLLKVFSFLDTKALCRSAQVCRSWSILALDGSNW 97

Query: 65  IKLHL 69
            ++ L
Sbjct: 98  QRVDL 102


>FXLA_MOUSE (Q6P1G2) F-box/LRR-repeat protein 10 (F-box and
            leucine-rich repeat protein 10) (F-box protein FBL10)
          Length = 1309

 Score = 30.4 bits (67), Expect = 9.5
 Identities = 16/61 (26%), Positives = 30/61 (48%), Gaps = 5/61 (8%)

Query: 16   TPHPDNLPRTQ-----LHNDLIAEVLSWLPVKSLTRLKCVCKSWNSLIISDQTFIKLHLH 70
            +P PD+LP        +H ++   V S+L  + L     VC++WN      + + ++ L+
Sbjct: 1022 SPPPDSLPLDDGAAHVMHREVWMAVFSYLSHRDLCVCMRVCRTWNRWCCDKRLWTRIDLN 1081

Query: 71   R 71
            R
Sbjct: 1082 R 1082


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.322    0.137    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,027,856
Number of Sequences: 164201
Number of extensions: 2364125
Number of successful extensions: 4510
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 4502
Number of HSP's gapped (non-prelim): 14
length of query: 440
length of database: 59,974,054
effective HSP length: 113
effective length of query: 327
effective length of database: 41,419,341
effective search space: 13544124507
effective search space used: 13544124507
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (30.4 bits)