BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0175.2
(314 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
PIF3_ARATH (O80536) Phytochrome-interacting factor 3 (Phytochrom... 76 9e-14
PIF4_ARATH (Q8W2F3) Phytochrome-interacting factor 4 (Basic heli... 69 1e-11
CBF1_YEAST (P17106) Centromere-binding protein 1 (CBP-1) (Centro... 50 6e-06
RAP1_ARATH (Q39204) Transcription factor AtMYC2 (R-homologous Ar... 50 7e-06
EGL1_ARATH (Q9CAD0) Transcription factor EGL1 (ENHANCER OF GLABR... 48 4e-05
HFR1_ARATH (Q9FE22) Long hypocotyl in far-red 1 (bHLH-like prote... 47 6e-05
ARRS_MAIZE (P13027) Anthocyanin regulatory R-S protein 46 1e-04
ARLC_MAIZE (P13526) Anthocyanin regulatory Lc protein 45 2e-04
YAWC_SCHPO (Q10186) Hypothetical protein C3F10.12c in chromosome I 43 0.001
IND_ARATH (O81313) INDEHISCENT protein 41 0.003
ICE1_ARATH (Q9LSE2) Transcription factor ICE1 (Inducer of CBF ex... 41 0.003
CRK7_HUMAN (Q9NYV4) Cell division cycle 2-related protein kinase... 41 0.004
BMAL_MOUSE (Q9WTL8) Aryl hydrocarbon receptor nuclear translocat... 41 0.004
SDC3_CAEEL (P34706) Zinc finger protein sdc-3 40 0.008
MITF_MOUSE (Q08874) Microphthalmia-associated transcription factor 40 0.008
MITF_HUMAN (O75030) Microphthalmia-associated transcription factor 40 0.008
CBF1_KLULA (P49379) Centromere-binding protein 1 (CBP-1) (Centro... 40 0.008
SRE1_RAT (P56720) Sterol regulatory element binding protein-1 (S... 39 0.013
SRE1_MOUSE (Q9WTN3) Sterol regulatory element binding protein-1 ... 39 0.013
SRE1_HUMAN (P36956) Sterol regulatory element binding protein-1 ... 39 0.013
>PIF3_ARATH (O80536) Phytochrome-interacting factor 3
(Phytochrome-associated protein 3) (Basic
helix-loop-helix protein 8) (bHLH8) (AtbHLH008)
Length = 524
Score = 76.3 bits (186), Expect = 9e-14
Identities = 49/161 (30%), Positives = 90/161 (55%), Gaps = 10/161 (6%)
Query: 47 SVTETSSVDQSSKITISDSELSVEKNQSPETSMVVASMEKKRRSRNGSPLSKDPKGGSKK 106
SV + D IS+ S K+Q E ++V +S+ +G+ L + S
Sbjct: 250 SVASATPKDNQKACLISED--SCRKDQESEKAVVCSSVG------SGNSLDGPSESPSLS 301
Query: 107 QKKGNGGVKEEDMAKEEKKDKK-KGPEEPSTGYIHVRARRGQATDSHSLAERVRREKISE 165
K+ + +++ D E+ +++ G +E + ++R ++ + H+L+ER RR++I+E
Sbjct: 302 LKRKHSNIQDIDCHSEDVEEESGDGRKEAGPSRTGLGSKRSRSAEVHNLSERRRRDRINE 361
Query: 166 RMNMLQQLVPGCDKVTGKALVLEEIINYVQSLQHQVEFLSM 206
+M LQ+L+P C+KV KA +L+E I Y++SLQ QV+ +SM
Sbjct: 362 KMRALQELIPNCNKV-DKASMLDEAIEYLKSLQLQVQIMSM 401
>PIF4_ARATH (Q8W2F3) Phytochrome-interacting factor 4 (Basic
helix-loop-helix protein 9) (bHLH9) (AtbHLH009) (Short
under red-light 2)
Length = 430
Score = 69.3 bits (168), Expect = 1e-11
Identities = 46/121 (38%), Positives = 72/121 (59%), Gaps = 20/121 (16%)
Query: 144 RRGQATDSHSLAERVRREKISERMNMLQQLVPGCDKVTGKALVLEEIINYVQSLQHQVEF 203
RR +A + H+L+ER RR++I+ERM LQ+L+P C K T KA +L+E I+Y++SLQ Q++
Sbjct: 254 RRSRAAEVHNLSERRRRDRINERMKALQELIPHCSK-TDKASILDEAIDYLKSLQLQLQV 312
Query: 204 LSM-----KLASVNPMLFDMAMDLDNLLVRPEQKVNSLASPPLVLPCVPLCNP-----NP 253
+ M A+ PM+F V+P+Q + + S P+ LP P+ + NP
Sbjct: 313 MWMGSGMAAAAASAPMMFPG--------VQPQQFIRQIQS-PVQLPRFPVMDQSAIQNNP 363
Query: 254 G 254
G
Sbjct: 364 G 364
>CBF1_YEAST (P17106) Centromere-binding protein 1 (CBP-1)
(Centromere-binding factor 1) (Centromere promoter
factor 1)
Length = 351
Score = 50.4 bits (119), Expect = 6e-06
Identities = 43/176 (24%), Positives = 78/176 (43%), Gaps = 6/176 (3%)
Query: 29 ELLQPHINTTTLHQETSFSVTETSSVDQSSKITISDSELSVEKNQSPETSMVVASMEKKR 88
+L+Q +++ H + + + I+ S V+ N S E M + ME +
Sbjct: 104 DLIQGQEDSSDAHTSNQTNANGEHKDSLNGERAITPSNEGVKPNTSLE-GMTSSPMESTQ 162
Query: 89 RSRNGS--PLSKDPKGGSKKQKKGNGGVKEEDMAKEEKKDKKKGPEEPSTGYIHVRARRG 146
+S+N PL++ +G +Q + + D+ K+ + +P+T +
Sbjct: 163 QSKNDMLIPLAEHDRGPEHQQDDEDNDDADIDLKKDISMQPGRRGRKPTT-LATTDEWKK 221
Query: 147 QATDSHSLAERVRREKISERMNMLQQLVPGCDKVTGKALVLEEIINYVQSLQHQVE 202
Q DSH ER RRE I+ +N+L L+P + + KA +L Y+Q L+ E
Sbjct: 222 QRKDSHKEVERRRRENINTAINVLSDLLP--VRESSKAAILARAAEYIQKLKETDE 275
>RAP1_ARATH (Q39204) Transcription factor AtMYC2 (R-homologous
Arabidopsis protein-1) (RAP-1) (Basic helix-loop-helix
protein 6) (bHLH6) (AtbHLH006) (rd22BP1)
Length = 623
Score = 50.1 bits (118), Expect = 7e-06
Identities = 47/204 (23%), Positives = 92/204 (45%), Gaps = 16/204 (7%)
Query: 24 SSLEDELLQPHINTTTLHQETSFSVTETSSVDQSSKITISDSELSVEKNQSPETSMVVAS 83
S + + P N T +E +FS + ++ V S ++ + + +P+ S
Sbjct: 330 SPVHSQTQNPKFNNT-FSRELNFSTSSSTLVKPRSGEILNFGDEGKRSSGNPDPSSYSGQ 388
Query: 84 MEKKRRSRNGSPLSKDP--KGGSKKQKKGNGGVKEEDMAKE---EKKDKKKGPEEPSTGY 138
+ + + + L++D G K + + E + KE EK+ KK+G +P+ G
Sbjct: 389 TQFENKRKRSMVLNEDKVLSFGDKTAGESDHSDLEASVVKEVAVEKRPKKRG-RKPANGR 447
Query: 139 IHVRARRGQATDSHSLAERVRREKISERMNMLQQLVPGCDKVTGKALVLEEIINYVQSLQ 198
+ +H AER RREK+++R L+ +VP K+ KA +L + I Y+ L+
Sbjct: 448 --------EEPLNHVEAERQRREKLNQRFYALRAVVPNVSKM-DKASLLGDAIAYINELK 498
Query: 199 HQVEFLSMKLASVNPMLFDMAMDL 222
+V + + L ++ ++L
Sbjct: 499 SKVVKTESEKLQIKNQLEEVKLEL 522
>EGL1_ARATH (Q9CAD0) Transcription factor EGL1 (ENHANCER OF GLABRA3)
(Basic helix-loop-helix protein 2) (bHLH2) (AtbHLH002)
(AtMyc-146)
Length = 596
Score = 47.8 bits (112), Expect = 4e-05
Identities = 22/58 (37%), Positives = 39/58 (66%), Gaps = 1/58 (1%)
Query: 147 QATDSHSLAERVRREKISERMNMLQQLVPGCDKVTGKALVLEEIINYVQSLQHQVEFL 204
+ T +H+L+E+ RREK++ER L+ ++P K+ K +L++ I Y+Q LQ +V+ L
Sbjct: 401 EETGNHALSEKKRREKLNERFMTLRSIIPSISKI-DKVSILDDTIEYLQDLQKRVQEL 457
>HFR1_ARATH (Q9FE22) Long hypocotyl in far-red 1 (bHLH-like protein
HFR1) (Reduced phytochrome signaling) (Basic
helix-loop-helix FBI1 protein) (Basic helix-loop-helix
protein 26) (bHLH26) (AtbHLH026) (Reduced sensitivity to
far-red light)
Length = 292
Score = 47.0 bits (110), Expect = 6e-05
Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 157 RVRREKISERMNMLQQLVPGCDKVTGKALVLEEIINYVQSLQHQVEFLSMKLASVNP 213
R R EK+S +M LQQLVP C K T K VL++ I Y+++LQ Q++ +S VNP
Sbjct: 144 RRRDEKMSNKMRKLQQLVPNCHK-TDKVSVLDKTIEYMKNLQLQLQMMS--TVGVNP 197
>ARRS_MAIZE (P13027) Anthocyanin regulatory R-S protein
Length = 612
Score = 45.8 bits (107), Expect = 1e-04
Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 143 ARRGQATDSHSLAERVRREKISERMNMLQQLVPGCDKVTGKALVLEEIINYVQSLQHQVE 202
A+ AT +H ++ER RREK++E +L+ L+P +V KA +L E I Y++ LQ +V+
Sbjct: 410 AQEMSATKNHVMSERKRREKLNEMFLVLKSLLPSIHRV-NKASILAETIAYLKELQRRVQ 468
Query: 203 FL 204
L
Sbjct: 469 EL 470
>ARLC_MAIZE (P13526) Anthocyanin regulatory Lc protein
Length = 610
Score = 45.4 bits (106), Expect = 2e-04
Identities = 24/59 (40%), Positives = 38/59 (63%), Gaps = 1/59 (1%)
Query: 146 GQATDSHSLAERVRREKISERMNMLQQLVPGCDKVTGKALVLEEIINYVQSLQHQVEFL 204
G T +H ++ER RREK++E +L+ L+P +V KA +L E I Y++ LQ +V+ L
Sbjct: 411 GTGTKNHVMSERKRREKLNEMFLVLKSLLPSIHRV-NKASILAETIAYLKELQRRVQEL 468
>YAWC_SCHPO (Q10186) Hypothetical protein C3F10.12c in chromosome I
Length = 201
Score = 42.7 bits (99), Expect = 0.001
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 151 SHSLAERVRREKISERMNMLQQLVPGCDKVTGKALVLEEIINYVQSLQHQVEFLSMK 207
SH ER RRE ISE + L +VPGC+K K +L+ Y++SL+ E K
Sbjct: 92 SHKEVERRRREAISEGIKELANIVPGCEK--NKGSILQRTAQYIRSLKEMEEMCREK 146
>IND_ARATH (O81313) INDEHISCENT protein
Length = 169
Score = 41.2 bits (95), Expect = 0.003
Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 150 DSHSLAERVRREKISERMNMLQQLVPGCDKVTGKALVLEEIINYVQSLQHQVEFL 204
D ++ R RRE+ISE++ +L+++VPG K+ A +L+E I Y + L+ QV L
Sbjct: 92 DPQTVVARRRRERISEKIRILKRIVPGGAKM-DTASMLDEAIRYTKFLKRQVRIL 145
>ICE1_ARATH (Q9LSE2) Transcription factor ICE1 (Inducer of CBF
expression 1) (Basic helix-loop-helix protein 116)
(bHLH116) (AtbHLH116)
Length = 494
Score = 41.2 bits (95), Expect = 0.003
Identities = 39/162 (24%), Positives = 70/162 (43%), Gaps = 30/162 (18%)
Query: 52 SSVDQSSKITISDSELSVEKNQSPETSMVVASMEKKRRSRNGSPLSKDPKGGSKKQKKGN 111
+++ QSS + +SE S + S + M +E + +++ K Q G
Sbjct: 237 AAMRQSSGSKMGNSESSGMRRFSDDGDMDETGIEVSGLNYESDEINESGKAAESVQIGGG 296
Query: 112 GGVKEEDMAKEEKKDKKKGPEEPSTGYIHVRARRGQATDSHSLAERVRREKISERMNMLQ 171
G K KKKG + +AER RR+K+++R+ ML+
Sbjct: 297 G------------KGKKKGMPAKNL-----------------MAERRRRKKLNDRLYMLR 327
Query: 172 QLVPGCDKVTGKALVLEEIINYVQSLQHQVEFLSMKLASVNP 213
+VP K+ +A +L + I+Y++ L ++ L +L S P
Sbjct: 328 SVVPKISKM-DRASILGDAIDYLKELLQRINDLHNELESTPP 368
>CRK7_HUMAN (Q9NYV4) Cell division cycle 2-related protein kinase 7
(EC 2.7.1.37) (CDC2-related protein kinase 7) (CrkRS)
Length = 1490
Score = 40.8 bits (94), Expect = 0.004
Identities = 35/179 (19%), Positives = 76/179 (41%), Gaps = 14/179 (7%)
Query: 85 EKKRRSRNGSPLSKDPKGGSKKQKKGNGGVKEEDMAKEEKKDKKKGPEEPSTGYIHVRAR 144
+K+RR R + ++P +K+ G E + K+ P +P+ G + A
Sbjct: 1045 KKRRRQRQSGVVVEEPPPSKTSRKETTSGTSTEPV-----KNSSPAPPQPAPGKVESGA- 1098
Query: 145 RGQATDSHSLAERVRREKISERMNMLQQLVPGCDKVTGKALVLEEIINYVQSLQHQVEFL 204
G A + +++ + +++ +N+LQ + A +L I+ +Q Q+E L
Sbjct: 1099 -GDAIGLADITQQLNQSELAVLLNLLQSQTDL--SIPQMAQLLN--IHSNPEMQQQLEAL 1153
Query: 205 SMKLASVNPMLFDMAMDLDNLLVRPEQKVNSLASPPLVLPCVPLCNPNPGTTFADTSTL 263
+ ++++ + D+ + PE+ + S P++LP +T AD +
Sbjct: 1154 NQSISALTEAT---SQQQDSETMAPEESLKEAPSAPVILPSAEQMTLEASSTPADMQNI 1209
>BMAL_MOUSE (Q9WTL8) Aryl hydrocarbon receptor nuclear
translocator-like protein 1 (Brain and muscle ARNT-like
1) (Arnt3)
Length = 632
Score = 40.8 bits (94), Expect = 0.004
Identities = 26/98 (26%), Positives = 49/98 (49%), Gaps = 3/98 (3%)
Query: 104 SKKQKKGNGGVKEEDMAKEEKKDKKKGPEEPSTGYIHVRARRGQATDSHSLAERVRREKI 163
++K+K + +D A EE D K Y + R A ++HS E+ RR+K+
Sbjct: 36 NRKRKGSATDYQLDDFAFEESMDTDKDDPHGRLEYAEHQGRIKNAREAHSQIEKRRRDKM 95
Query: 164 SERMNMLQQLVPGCDKVT---GKALVLEEIINYVQSLQ 198
+ ++ L LVP C+ ++ K VL + ++++L+
Sbjct: 96 NSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR 133
>SDC3_CAEEL (P34706) Zinc finger protein sdc-3
Length = 2150
Score = 40.0 bits (92), Expect = 0.008
Identities = 56/255 (21%), Positives = 105/255 (40%), Gaps = 19/255 (7%)
Query: 30 LLQPHINTTTLHQ-ETSFSVTETSSVDQSSKITISDSELSVEKNQSPETSMVVASMEKKR 88
L + H+ TL E + + + V++ + ++ L VE+ P ++ A + R
Sbjct: 1057 LEEDHVRIPTLSTVEINSLLKDQDLVEEQEIVEEEETPLVVEEPDIPAAPVLSAEEKASR 1116
Query: 89 RSRNGSPLSKDPKGGSKKQKKGNGGVKEEDMAKEEKKDKKKGPEEPSTGYIHVRARRGQA 148
SR S L K P +G V EE EE ++ E + AR G
Sbjct: 1117 ISREMSALRKLPDAAFNYASDRDGVVVEEVETIEEIQEIYNDKLEKM-----IAARLG-- 1169
Query: 149 TDSHSLAERVRREKISERMNMLQQLVPGCDKVTGKALVLEEIINYVQSLQ-HQVEFLSMK 207
S+A+ E++SE + Q G + ++ + + ++ ++ +Q +Q +S
Sbjct: 1170 ----SIAQGANIERLSEDQLLGDQ---GSEDISFEEIQVDLLLESGVEVQVNQSVTISRS 1222
Query: 208 LASVNPMLF-DMAMDLDNLLVRPEQKVNSLASPPLVLP--CVPLCNPNPGTTFADTSTLN 264
S +L D + L V +K N+ P + + VP+ N ++ TL
Sbjct: 1223 STSFESLLVEDPEEHPEQLPVSASEKANNQIVPEVEVEGSVVPVTNQQEENVTSEGPTLQ 1282
Query: 265 PSTSFPTANHDYLLD 279
+S P+++H Y +D
Sbjct: 1283 EGSSIPSSSHIYTVD 1297
>MITF_MOUSE (Q08874) Microphthalmia-associated transcription factor
Length = 526
Score = 40.0 bits (92), Expect = 0.008
Identities = 34/128 (26%), Positives = 57/128 (43%), Gaps = 18/128 (14%)
Query: 134 PSTGYIHVRARRGQATDSHSLAERVRREKISERMNMLQQLVPGC---DKVTGKALVLEEI 190
P+ A+ Q D+H+L ER RR I++R+ L L+P D K +L+
Sbjct: 298 PTESEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKAS 357
Query: 191 INYVQSLQHQ------VEFLSMKLASVNPMLFDMAMDLDNLLVRPEQKVNSLASPPLVLP 244
++Y++ LQ + +E KL N L LL E ++ + A ++P
Sbjct: 358 VDYIRKLQREQQRAKDLENRQKKLEHANRHL---------LLRVQELEMQARAHGLSLIP 408
Query: 245 CVPLCNPN 252
LC+P+
Sbjct: 409 STGLCSPD 416
>MITF_HUMAN (O75030) Microphthalmia-associated transcription factor
Length = 526
Score = 40.0 bits (92), Expect = 0.008
Identities = 34/128 (26%), Positives = 57/128 (43%), Gaps = 18/128 (14%)
Query: 134 PSTGYIHVRARRGQATDSHSLAERVRREKISERMNMLQQLVPGC---DKVTGKALVLEEI 190
P+ A+ Q D+H+L ER RR I++R+ L L+P D K +L+
Sbjct: 298 PTESEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKAS 357
Query: 191 INYVQSLQH------QVEFLSMKLASVNPMLFDMAMDLDNLLVRPEQKVNSLASPPLVLP 244
++Y++ LQ ++E KL N L LL E ++ + A ++P
Sbjct: 358 VDYIRKLQREQQRAKELENRQKKLEHANRHL---------LLRIQELEMQARAHGLSLIP 408
Query: 245 CVPLCNPN 252
LC+P+
Sbjct: 409 STGLCSPD 416
>CBF1_KLULA (P49379) Centromere-binding protein 1 (CBP-1)
(Centromere-binding factor 1) (Centromere promoter
factor 1)
Length = 359
Score = 40.0 bits (92), Expect = 0.008
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 16/136 (11%)
Query: 63 SDSELSVEKNQSPETSMVVASMEKKRRSRNGSPLSKDPKGGSKKQKKGNGGVKEEDMAKE 122
+DSE + + +S ++ + R P G++ + NGG A
Sbjct: 179 NDSERATKIGESGSSNETAGADGSGDREDGSQP------DGTEHDDEENGGAGAGGAAP- 231
Query: 123 EKKDKKKGPEEPSTGYIHVRARRGQATDSHSLAERVRREKISERMNMLQQLVPGCDKVTG 182
++ +K G E ST + + Q +SH ER RR+ I+ + L L+P K T
Sbjct: 232 -RRGRKPGTETGSTAW------KQQRKESHKEVERRRRQNINTAIEKLSDLLP--VKETS 282
Query: 183 KALVLEEIINYVQSLQ 198
KA +L Y+Q ++
Sbjct: 283 KAAILSRAAEYIQKMK 298
>SRE1_RAT (P56720) Sterol regulatory element binding protein-1
(SREBP-1) (Sterol regulatory element-binding
transcription factor 1) (Adipocyte determination-and
differentiation-dependent factor 1) (ADD1) (Fragment)
Length = 1024
Score = 39.3 bits (90), Expect = 0.013
Identities = 30/109 (27%), Positives = 55/109 (49%), Gaps = 14/109 (12%)
Query: 145 RGQATDSHSLAERVRREKISERMNMLQQLVPGCDKVTGKALVLEEIINYVQSLQH----- 199
RG+ +H+ E+ R I++++ L+ LV G + K+ VL + I+Y++ LQH
Sbjct: 291 RGEKRTAHNAIEKRYRSSINDKIVELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKL 350
Query: 200 QVEFLSMKLASVNPMLFDM--------AMDLDNLLVRPEQKVNSLASPP 240
+ E L+++ A + L D+ D+ ++PE V +L PP
Sbjct: 351 KQENLTLRSAHKSKSLKDLVSACGSGGGTDVSMEGMKPE-VVETLTPPP 398
>SRE1_MOUSE (Q9WTN3) Sterol regulatory element binding protein-1
(SREBP-1) (Sterol regulatory element-binding
transcription factor 1)
Length = 1134
Score = 39.3 bits (90), Expect = 0.013
Identities = 30/109 (27%), Positives = 55/109 (49%), Gaps = 14/109 (12%)
Query: 145 RGQATDSHSLAERVRREKISERMNMLQQLVPGCDKVTGKALVLEEIINYVQSLQH----- 199
RG+ +H+ E+ R I++++ L+ LV G + K+ VL + I+Y++ LQH
Sbjct: 315 RGEKRTAHNAIEKRYRSSINDKIVELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKL 374
Query: 200 QVEFLSMKLASVNPMLFDM--------AMDLDNLLVRPEQKVNSLASPP 240
+ E L+++ A + L D+ D+ ++PE V +L PP
Sbjct: 375 KQENLTLRSAHKSKSLKDLVSACGSGGGTDVSMEGMKPE-VVETLTPPP 422
>SRE1_HUMAN (P36956) Sterol regulatory element binding protein-1
(SREBP-1) (Sterol regulatory element-binding
transcription factor 1)
Length = 1147
Score = 39.3 bits (90), Expect = 0.013
Identities = 20/67 (29%), Positives = 38/67 (55%)
Query: 145 RGQATDSHSLAERVRREKISERMNMLQQLVPGCDKVTGKALVLEEIINYVQSLQHQVEFL 204
RG+ +H+ E+ R I++++ L+ LV G + K+ VL + I+Y++ LQH + L
Sbjct: 321 RGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKL 380
Query: 205 SMKLASV 211
+ S+
Sbjct: 381 KQENLSL 387
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.313 0.129 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,018,821
Number of Sequences: 164201
Number of extensions: 1536961
Number of successful extensions: 7336
Number of sequences better than 10.0: 293
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 222
Number of HSP's that attempted gapping in prelim test: 6365
Number of HSP's gapped (non-prelim): 750
length of query: 314
length of database: 59,974,054
effective HSP length: 110
effective length of query: 204
effective length of database: 41,911,944
effective search space: 8550036576
effective search space used: 8550036576
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)
Lotus: description of TM0175.2