BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0175.10
(868 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
LPRC_HUMAN (P42704) 130 kDa leucine-rich protein (LRP 130) (GP13... 47 2e-04
YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I 39 0.045
ABI3_ARATH (Q01593) Abscisic acid-insensitive protein 3 35 0.66
VILD_DICDI (Q8WQ85) Villidin 35 0.86
BCA1_ARATH (Q93Y32) Branched-chain-amino-acid aminotransferase 1... 35 1.1
POB1_SCHPO (O74653) Pob1 protein (BOI protein homolog) 34 1.5
HKL3_MALDO (O04136) Homeobox protein knotted-1 like 3 (KNAP3) 34 1.5
SYH_STRPN (Q97NC9) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histi... 34 1.9
PRMA_STAEP (Q8CSC7) Ribosomal protein L11 methyltransferase (EC ... 34 1.9
C13B_XYLFT (Q87AX5) Putative cytochrome P450 133B1 (EC 1.14.-.-) 33 2.5
C13B_XYLFA (Q9PGC5) Putative cytochrome P450 133B1 (EC 1.14.-.-) 33 2.5
Y391_HUMAN (O15091) Hypothetical protein KIAA0391 33 3.3
SYH_STRR6 (Q8DN46) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histi... 33 4.3
SNE2_HUMAN (Q8WXH0) Nesprin 2 (Nuclear envelope spectrin repeat ... 32 7.3
RPN2_CANGA (Q6FIP2) 26S proteasome regulatory subunit RPN2 32 7.3
TARS_HUMAN (Q7Z7G0) Target of Nesh-SH3 precursor (Tarsh) (Nesh b... 32 9.5
MU5B_HUMAN (Q9HC84) Mucin 5B precursor (Mucin 5 subtype B, trach... 32 9.5
>LPRC_HUMAN (P42704) 130 kDa leucine-rich protein (LRP 130) (GP130)
(Leucine-rich PPR-motif containing protein)
Length = 1273
Score = 47.0 bits (110), Expect = 2e-04
Identities = 62/303 (20%), Positives = 117/303 (38%), Gaps = 16/303 (5%)
Query: 323 RLDEALEFFRQKRDSE---GFVPCKVRYNILIGRLLRENRLKDVYELLMDMNETCIPPNM 379
+L+E EF + D+ G V YN L+ L+ + L M E I PN
Sbjct: 17 KLEERTEFAHRIWDTLQKLGAVYDVSHYNALLKVYLQNEYKFSPTDFLAKMEEANIQPNR 76
Query: 380 VTMNAVLCFFCKLGMVDVALELFNSRSQFGLSPNYMAYKYLILTLCWDGCPKEAYRVLRS 439
VT ++ +C +G ++ A ++ L + L+ G + A +L
Sbjct: 77 VTYQRLIASYCNVGDIEGASKILGFMKTKDLPVTEAVFSALVTGHARAGDMENAENILTV 136
Query: 440 SSGTGYFPDRRTFSTLANALCRECKIDEMWDLLDFALERRFMPNSSTYSRFVSALCRAGR 499
G P T+ L NA + ID + L+ + + + + +AG
Sbjct: 137 MRDAGIEPGPDTYLALLNAYAEKGDIDHVKQTLEKVEKFELHLMDRDLLQIIFSFSKAGY 196
Query: 500 VEDGYLMRGDLDKVTARFSY----AKMIMGFIKSNRGDIAARLLVE---MKEKGYELKRS 552
+ + + K T Y +I+ + D+A ++L+ KE G + S
Sbjct: 197 LS---MSQKFWKKFTCERRYIPDAMNLILLLVTEKLEDVALQILLACPVSKEDGPSVFGS 253
Query: 553 SYRHVLHCLLHMDNPRTRFFNLLEMMTHGKPHCDIFNSFIDGAMHANKPDLAREVFELMQ 612
+ + HC+ M+ P + + + + + H + A+ ANK DLA+ + + ++
Sbjct: 254 FF--LQHCVT-MNTPVEKLTDYCKKLKEVQMHSFPLQFTLHCALLANKTDLAKALMKAVK 310
Query: 613 RNG 615
G
Sbjct: 311 EEG 313
Score = 33.9 bits (76), Expect = 1.9
Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 8/120 (6%)
Query: 447 PDRRTFSTLANALCRECKIDEMWDLLDFALERRFMPNSSTYSRFVSALCRAGRVEDGYLM 506
P R L LC E + M L+ + + Y+ ++ CR +VED +
Sbjct: 556 PIRDVLKQLILVLCSE---ENMQKALELKAKYESDMVTGGYAALINLCCRHDKVEDALNL 612
Query: 507 RGDLDKVTARF-----SYAKMIMGFIKSNRGDIAARLLVEMKEKGYELKRSSYRHVLHCL 561
+ + D++ + +Y ++ K + A ++L EMKEK +K ++ H L
Sbjct: 613 KEEFDRLDSSAVLDTGNYLGLVRVLAKHGKLQDAIKILKEMKEKDVLIKDTTALSFFHML 672
>YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I
Length = 1261
Score = 39.3 bits (90), Expect = 0.045
Identities = 28/113 (24%), Positives = 51/113 (44%), Gaps = 7/113 (6%)
Query: 305 LPLENAYGVWIRGLVQGGRLDEA---LEFFRQKRDSEGFVPCKVRYNILIGRLLRENRLK 361
+P + + I + G D+A L F + + P YN ++ +L R R
Sbjct: 885 IPRASTFAHLINNSTRRGDTDDATTALNIFEETK-RHNVKPSVFLYNAVLSKLGRARRTT 943
Query: 362 DVYELLMDMNETCIPPNMVTMNAVLCFFCKLGMVDVALELFNSRSQFGLSPNY 414
+ ++L +M E+ + P VT V+ C++G +A +LF ++ PNY
Sbjct: 944 ECWKLFQEMKESGLLPTSVTYGTVINAACRIGDESLAEKLF---AEMENQPNY 993
Score = 36.2 bits (82), Expect = 0.39
Identities = 78/382 (20%), Positives = 134/382 (34%), Gaps = 49/382 (12%)
Query: 199 FQGLDLDGFGYHILLNSLAENNCYNAFDVIANQICMRGYESHMTNVI-VIKHLCKQGRLE 257
F L LD IL +S A + + ++ + + M GY + +I + ++G +
Sbjct: 851 FMALILDAM---ILSSSFARQ--FKSSNLFCDNMKMLGYIPRASTFAHLINNSTRRGDTD 905
Query: 258 EAEAHLNGLVGSGKELHRSELSFLIGVLCESNRFERAVE---LVSEFGTS--LPLENAYG 312
+A LN + + + + VL + R R E L E S LP YG
Sbjct: 906 DATTALNIFEETKRHNVKPSVFLYNAVLSKLGRARRTTECWKLFQEMKESGLLPTSVTYG 965
Query: 313 VWIRGLVQGGRLDEALEFFRQKRDSEGFVPCKVRYNILIG-----------RLLRENRL- 360
I + G A + F + + + P YN +I L NRL
Sbjct: 966 TVINAACRIGDESLAEKLFAEMENQPNYQPRVAPYNTMIQFEVQTMFNREKALFYYNRLC 1025
Query: 361 -------KDVYELLMDMNETCIPPNMVTMNAVLCFFCKLGMVDVALELFNSRSQFGLSPN 413
Y+LLMD T P N +G V LEL LS +
Sbjct: 1026 ATDIEPSSHTYKLLMDAYGTLKPVN-------------VGSVKAVLELMERTDVPILSMH 1072
Query: 414 YMAYKYLILTLCWD-GCPKEAYRVLRSSSGTGYFP-DRRTFSTLANALCRECKIDEMWDL 471
Y AY +++ + D Y + G D F + +L +I E +
Sbjct: 1073 YAAYIHILGNVVSDVQAATSCYMNALAKHDAGEIQLDANLFQSQIESLIANDRIVEGIQI 1132
Query: 472 LDFALERRFMPNSSTYSRFVSALCRAGRVEDG--YLMRGDLDKVTAR--FSYAKMIMGFI 527
+ N+ + + + G + Y + + ++ + +Y M+ ++
Sbjct: 1133 VSDMKRYNVSLNAYIVNALIKGFTKVGMISKARYYFDLLECEGMSGKEPSTYENMVRAYL 1192
Query: 528 KSNRGDIAARLLVEMKEKGYEL 549
N G A ++ ++K K Y L
Sbjct: 1193 SVNDGRKAMEIVEQLKRKRYPL 1214
Score = 35.8 bits (81), Expect = 0.50
Identities = 46/179 (25%), Positives = 67/179 (36%), Gaps = 23/179 (12%)
Query: 266 LVGSGKELHRSELSFLIGVLCESNRFERAVELVSEFGTSL-------PLENAYGVWIRGL 318
L+ + K LH LI VL ++ RF+ AV+ V E L LE A W L
Sbjct: 798 LIETNKFLHPEVYPTLISVLSKNKRFD-AVQRVFEHSKHLYRKISTKSLEKAN--WFMAL 854
Query: 319 VQGGRLDEALEFFRQKRDSE---------GFVPCKVRYNILIGRLLRENRLKDVYELLMD 369
+ + + F RQ + S G++P + LI R D L
Sbjct: 855 ILDAMILSS-SFARQFKSSNLFCDNMKMLGYIPRASTFAHLINNSTRRGDTDDATTALNI 913
Query: 370 MNETC---IPPNMVTMNAVLCFFCKLGMVDVALELFNSRSQFGLSPNYMAYKYLILTLC 425
ET + P++ NAVL + +LF + GL P + Y +I C
Sbjct: 914 FEETKRHNVKPSVFLYNAVLSKLGRARRTTECWKLFQEMKESGLLPTSVTYGTVINAAC 972
Score = 33.9 bits (76), Expect = 1.9
Identities = 71/339 (20%), Positives = 143/339 (41%), Gaps = 21/339 (6%)
Query: 542 MKEKGYELKRSSYRHVLHCLLHM---DNPRTRFFNLLEMMTHG-KPHCDIFNSFIDGAMH 597
MK GY + S++ H+++ D+ T E H KP ++N+ +
Sbjct: 879 MKMLGYIPRASTFAHLINNSTRRGDTDDATTALNIFEETKRHNVKPSVFLYNAVLSKLGR 938
Query: 598 ANKPDLAREVFELMQRNGIMTNASSQILVMKSYFRSRRISDALRFFNDIRHQVVVSTKL- 656
A + ++F+ M+ +G++ + + V+ + R S A + F ++ +Q ++
Sbjct: 939 ARRTTECWKLFQEMKESGLLPTSVTYGTVINAACRIGDESLAEKLFAEMENQPNYQPRVA 998
Query: 657 -YNRMI-VGLCKSDKADIALELCFEMLKVGLNPSIECYEVLVQKLCSLK--RYYEAVNLV 712
YN MI + + AL + + PS Y++L+ +LK ++
Sbjct: 999 PYNTMIQFEVQTMFNREKALFYYNRLCATDIEPSSHTYKLLMDAYGTLKPVNVGSVKAVL 1058
Query: 713 NVYEKAGRRLTS--FLGNVLLFHSMISP-EVYHSCV--DLRREKEGEF-LDSSMLTLIIG 766
+ E+ + S + + + +++S + SC L + GE LD+++ I
Sbjct: 1059 ELMERTDVPILSMHYAAYIHILGNVVSDVQAATSCYMNALAKHDAGEIQLDANLFQSQIE 1118
Query: 767 AFSGCLRVSYSIQELEELIAKCFPVDIYTYNLLMRKLTHHDM-DKACELFDRM-CQ--RG 822
+ R+ IQ + ++ ++ Y N L++ T M KA FD + C+ G
Sbjct: 1119 SLIANDRIVEGIQIVSDMKRYNVSLNAYIVNALIKGFTKVGMISKARYYFDLLECEGMSG 1178
Query: 823 LEPNRWTYGLMAHGFSNHGRKDEAKRWVHEMLKKGFNPP 861
EP+ + + A+ N GRK A V ++ +K + P
Sbjct: 1179 KEPSTYENMVRAYLSVNDGRK--AMEIVEQLKRKRYPLP 1215
>ABI3_ARATH (Q01593) Abscisic acid-insensitive protein 3
Length = 720
Score = 35.4 bits (80), Expect = 0.66
Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 10/123 (8%)
Query: 12 VTKHKPNSLFSSILTLFSNNCSSLSPSSSSSFPPPSFAISKTDVADTIN-------TWFT 64
+ H P+ + + TL C S S SSS+S P + +S + + +W
Sbjct: 61 IVHHDPSIFYGDLPTLPDFPCMSSSSSSSTSPAPVNAIVSSASSSSAASSSTSSAASWAI 120
Query: 65 TRHQSQDPLLIRIYNILSSDDDFSAAL---SALSLPLSETFVLRVLRHGGDDGDILSCLK 121
R +DP + + DD S AL +++ +PL + GGD D++
Sbjct: 121 LRSDGEDPTPNQNQYASGNCDDSSGALQSTASMEIPLDSSQGFGCGEGGGDCIDMMETFG 180
Query: 122 FFD 124
+ D
Sbjct: 181 YMD 183
>VILD_DICDI (Q8WQ85) Villidin
Length = 1704
Score = 35.0 bits (79), Expect = 0.86
Identities = 30/84 (35%), Positives = 40/84 (46%), Gaps = 9/84 (10%)
Query: 5 TLKHHHHVTKHKPNSLFSSILTLFSNNCSSLSPSSSSSFPPPSFA----ISKT-DVADTI 59
T HH V P+ ++S+ + S S SPSSS+S PP +FA I++T T
Sbjct: 635 TQTRHHSVLSRNPS--YTSLKS--SGGFSKPSPSSSTSTPPSTFASPLSIAQTSSTTTTT 690
Query: 60 NTWFTTRHQSQDPLLIRIYNILSS 83
T TT S P +R N SS
Sbjct: 691 TTTTTTTSSSSTPPPLRANNSTSS 714
>BCA1_ARATH (Q93Y32) Branched-chain-amino-acid aminotransferase 1,
mitochondrial precursor (EC 2.6.1.42) (Atbcat-1)
Length = 384
Score = 34.7 bits (78), Expect = 1.1
Identities = 27/97 (27%), Positives = 42/97 (42%), Gaps = 10/97 (10%)
Query: 466 DEMWDLLDFALERRFMPNSSTYSRFVSALCRAGRVEDGYLMRG---DLDKVTARFSYAKM 522
D WD L F+L R T F + CR G E GYL R +L+ +Y +
Sbjct: 51 DVDWDNLGFSLVR-------TDFMFATKSCRDGNFEQGYLSRYGNIELNPAAGILNYGQG 103
Query: 523 IMGFIKSNRGDIAARLLVEMKEKGYELKRSSYRHVLH 559
++ +K+ RG+ LL + +K + R +H
Sbjct: 104 LIEGMKAYRGEDGRVLLFRPELNAMRMKIGAERMCMH 140
>POB1_SCHPO (O74653) Pob1 protein (BOI protein homolog)
Length = 871
Score = 34.3 bits (77), Expect = 1.5
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 27 LFSNNCSSLSPSSSSSFPPPSFAISKTDVADTINTWF-TTRHQSQDPLLIR-----IYNI 80
L+SNN SLS S SS P ++SK V N+ F +++ + PLL + N
Sbjct: 109 LYSNN--SLSSSHSSILNGPLDSLSKPSVPSNFNSMFPSSKQEGPSPLLDNQPSSDLSNF 166
Query: 81 LSSDDDFSAALSALSLPLSETFVLRVL 107
+ D D++ A ++ S P + + +VL
Sbjct: 167 NTIDADYNNASASTSAPATSASLKKVL 193
>HKL3_MALDO (O04136) Homeobox protein knotted-1 like 3 (KNAP3)
Length = 427
Score = 34.3 bits (77), Expect = 1.5
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 17/123 (13%)
Query: 10 HHVTKHKPNSLFSSILTLFSNNCSSLSPSSS--------SSFPPPSFAISKTDVADTINT 61
HH + PN L S++L F+N ++ + S++ S+F S + + N
Sbjct: 42 HHSFQPAPNWLNSALLRNFTNTDTNPTNSNNANNNGGGVSNFLNLHVTASDSAASQASNQ 101
Query: 62 WFTTRHQSQDPLLIRIYN------ILSSDDDFSAALSALSLPLSETFVLRVLRHGGDDGD 115
W + H+ P+L R ++ ++ D +AALS S L +L GG DG
Sbjct: 102 WLSQSHR---PILHRNHSDVNDDVTVAGDSMIAAALSHDSADLKPDSILNKNEGGGGDGG 158
Query: 116 ILS 118
+++
Sbjct: 159 VMN 161
>SYH_STRPN (Q97NC9) Histidyl-tRNA synthetase (EC 6.1.1.21)
(Histidine--tRNA ligase) (HisRS)
Length = 429
Score = 33.9 bits (76), Expect = 1.9
Identities = 36/135 (26%), Positives = 64/135 (46%), Gaps = 21/135 (15%)
Query: 250 LCKQGRLEEAEAHLNGLVGSGKELHRSELSFLIGVLCESNRFERAVELVSEFGTSLPLEN 309
+C GR + A+ G +G F +GV ER + ++ + G +LP+EN
Sbjct: 282 VCAGGRYDGLVAYFGGPETAG-------FGFGLGV-------ERLLLILEKQGVTLPIEN 327
Query: 310 AYGVWIRGLVQGGRLDEALEFFRQKRDSEGFVPCKVRYNILIGRLLRENRLKDVY--ELL 367
A V+I L +G + +ALE + R +GF K + L +L + + DV+ + L
Sbjct: 328 ALDVYIAVLGEGANI-KALELVQALR-QQGF---KAERDYLNRKLKAQFKSADVFAAKTL 382
Query: 368 MDMNETCIPPNMVTM 382
+ + E+ + VT+
Sbjct: 383 ITLGESEVESGQVTV 397
>PRMA_STAEP (Q8CSC7) Ribosomal protein L11 methyltransferase (EC
2.1.1.-) (L11 Mtase)
Length = 312
Score = 33.9 bits (76), Expect = 1.9
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 184 AGKPDIALHLLGRMRFQGLDLDGFGYHILLNSLAENNCYNAFDVIANQICMRGYESHMTN 243
+G IA HLLG R + LD+D ++ + +N+C +A + + + E+ N
Sbjct: 184 SGILSIASHLLGVQRIKALDIDEMAVNVAKENFKKNHCDDAIEAVPGNLLKN--ENEKFN 241
Query: 244 VIV 246
+++
Sbjct: 242 IVI 244
>C13B_XYLFT (Q87AX5) Putative cytochrome P450 133B1 (EC 1.14.-.-)
Length = 402
Score = 33.5 bits (75), Expect = 2.5
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Query: 692 YEVLVQ---KLCSLKRYYEAVNLVNVY---EKAGRRLT--SFLGNVLLF----HSMISPE 739
YE L Q KL L+R + +L++++ E+ G +LT + NV++ + S
Sbjct: 187 YEELAQYFTKLIELRRTHPGTDLISMFLRAEEDGEKLTHDEIVSNVIMLLIAGYETTSNM 246
Query: 740 VYHSCVDLRREKEGEFLDSSMLTLIIGAFSGCLRVSYSIQ 779
+ ++ + L R E L S L+L+ A S CLR S+Q
Sbjct: 247 IGNALIALHRHPEQLALLKSDLSLMPQAVSECLRYDGSVQ 286
>C13B_XYLFA (Q9PGC5) Putative cytochrome P450 133B1 (EC 1.14.-.-)
Length = 402
Score = 33.5 bits (75), Expect = 2.5
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Query: 692 YEVLVQ---KLCSLKRYYEAVNLVNVY---EKAGRRLT--SFLGNVLLF----HSMISPE 739
YE L Q KL L+R + +L++++ E+ G +LT + NV++ + S
Sbjct: 187 YEELAQYFTKLIELRRTHPGTDLISMFLRAEEDGEKLTHDEIVSNVIMLLIAGYETTSNM 246
Query: 740 VYHSCVDLRREKEGEFLDSSMLTLIIGAFSGCLRVSYSIQ 779
+ ++ + L R E L S L+L+ A S CLR S+Q
Sbjct: 247 IGNALIALHRHPEQLALLKSDLSLMPQAVSECLRYDGSVQ 286
>Y391_HUMAN (O15091) Hypothetical protein KIAA0391
Length = 567
Score = 33.1 bits (74), Expect = 3.3
Identities = 23/85 (27%), Positives = 36/85 (42%)
Query: 606 EVFELMQRNGIMTNASSQILVMKSYFRSRRISDALRFFNDIRHQVVVSTKLYNRMIVGLC 665
+VFE+M+ L+++ S R +AL DI+ + S K YN I G
Sbjct: 196 DVFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLLEDIKKVITPSKKNYNDCIQGAL 255
Query: 666 KSDKADIALELCFEMLKVGLNPSIE 690
+ A L E+L + P +E
Sbjct: 256 LHQDVNTAWNLYQELLGHDIVPMLE 280
>SYH_STRR6 (Q8DN46) Histidyl-tRNA synthetase (EC 6.1.1.21)
(Histidine--tRNA ligase) (HisRS)
Length = 429
Score = 32.7 bits (73), Expect = 4.3
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 21/135 (15%)
Query: 250 LCKQGRLEEAEAHLNGLVGSGKELHRSELSFLIGVLCESNRFERAVELVSEFGTSLPLEN 309
+C GR + A+ G +G F +GV ER + ++ + G +LP+EN
Sbjct: 282 VCAGGRYDGLVAYFGGPETAG-------FGFGLGV-------ERLLLILEKQGVALPIEN 327
Query: 310 AYGVWIRGLVQGGRLDEALEFFRQKRDSEGFVPCKVRYNILIGRLLRENRLKDVY--ELL 367
A V+I L G + +ALE + R +GF K + L +L + + DV+ + L
Sbjct: 328 ALDVYIAVLGDGANV-KALELVQALR-QQGF---KAERDYLNRKLKAQFKSADVFAAKTL 382
Query: 368 MDMNETCIPPNMVTM 382
+ + E+ + VT+
Sbjct: 383 ITLGESEVESGQVTV 397
>SNE2_HUMAN (Q8WXH0) Nesprin 2 (Nuclear envelope spectrin repeat
protein 2) (Syne-2) (Synaptic nuclear envelope protein 2)
(Nucleus and actin connecting element protein) (NUANCE
protein)
Length = 6885
Score = 32.0 bits (71), Expect = 7.3
Identities = 46/195 (23%), Positives = 73/195 (36%), Gaps = 19/195 (9%)
Query: 448 DRRTFSTLANALCRECKIDEMW--------------DLLDFALERRFMPNSSTYSRFVSA 493
DRR + A ++ R KI+E W D L A PNSS + SA
Sbjct: 6114 DRRWRNICAMSMERRMKIEETWRLWQKFLDDYSRFEDWLKSAERTAACPNSSEV-LYTSA 6172
Query: 494 LCRAGRVEDGYLMRGDLDKVTARFSYAKMIMGFIKSNRGDIAARL--LVEMKEKGYELKR 551
R E R +++T K + NR D A+RL +V + ++ +
Sbjct: 6173 KEELKRFE--AFQRQIHERLTQLELINKQYRRLARENRTDTASRLKQMVHEGNQRWDNLQ 6230
Query: 552 SSYRHVLHCLLHMDNPRTRFFNLLEMMTHGKPHCDIFNSFIDGAMHANKPDLAREVFELM 611
VL L H N R F E + D+ + ++ ++ D R++
Sbjct: 6231 RRVTAVLRRLRHFTNQREEFEGTRESILVWLTEMDLQLTNVEHFSESDADDKMRQLNGFQ 6290
Query: 612 QRNGIMTNASSQILV 626
Q + TN Q++V
Sbjct: 6291 QEITLNTNKIDQLIV 6305
>RPN2_CANGA (Q6FIP2) 26S proteasome regulatory subunit RPN2
Length = 941
Score = 32.0 bits (71), Expect = 7.3
Identities = 17/46 (36%), Positives = 29/46 (62%), Gaps = 1/46 (2%)
Query: 547 YELKRSSYRHVLHCLLHMDNPRTRFFNLLEMMTHGKPHCDIFNSFI 592
++L S+ +H+L L H + R+ LLE++T G P CD +N+F+
Sbjct: 256 FDLVSSASQHLLEKLHHNLSERSYDSGLLEILT-GIPTCDYYNTFL 300
>TARS_HUMAN (Q7Z7G0) Target of Nesh-SH3 precursor (Tarsh) (Nesh
binding protein) (NeshBP)
Length = 1075
Score = 31.6 bits (70), Expect = 9.5
Identities = 11/30 (36%), Positives = 19/30 (62%)
Query: 565 DNPRTRFFNLLEMMTHGKPHCDIFNSFIDG 594
D+ +F+N+ + HG+ HC +SF+DG
Sbjct: 993 DSLTGKFYNIGDQRGHGEDHCQFVDSFLDG 1022
>MU5B_HUMAN (Q9HC84) Mucin 5B precursor (Mucin 5 subtype B,
tracheobronchial) (High molecular weight salivary mucin
MG1) (Sublingual gland mucin)
Length = 5703
Score = 31.6 bits (70), Expect = 9.5
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 13 TKHKPNSLFSSILTLFSNNCSSLSPSSSSSFPPPSFAISKTDVADTINTWFTTRHQSQDP 72
T H P L ++ T+ + + ++ S S+ +S PPS T A TI +T + S P
Sbjct: 2098 TTHTPTVLTTTTTTVATGSMATPSSSTQTSGTPPSL----TTTATTITATGSTTNPSSTP 2153
Query: 73 LLIRIYNILSSDDDFSAALSALSLPLS 99
I +L++ AA S+ P S
Sbjct: 2154 GTTPIPPVLTTTATTPAATSSTVTPSS 2180
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.326 0.140 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,944,222
Number of Sequences: 164201
Number of extensions: 4329286
Number of successful extensions: 12340
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 12300
Number of HSP's gapped (non-prelim): 44
length of query: 868
length of database: 59,974,054
effective HSP length: 119
effective length of query: 749
effective length of database: 40,434,135
effective search space: 30285167115
effective search space used: 30285167115
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 70 (31.6 bits)
Lotus: description of TM0175.10