BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0174.3
         (919 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

DP3X_BACSU (P09122) DNA polymerase III subunit gamma/tau (EC 2.7...   179  3e-44
DP3X_BUCBP (Q89A95) DNA polymerase III subunit gamma (EC 2.7.7.7)     157  1e-37
DP3X_ECOLI (P06710) DNA polymerase III subunit tau (EC 2.7.7.7) ...   154  1e-36
DP3X_HAEIN (P43746) DNA polymerase III subunit gamma/tau (EC 2.7...   151  7e-36
DP3X_SALTY (P74876) DNA polymerase III subunit tau (EC 2.7.7.7) ...   151  9e-36
DP3X_BUCAI (P57553) DNA polymerase III subunit gamma (EC 2.7.7.7)     149  3e-35
DP3X_MYCPN (P75177) DNA polymerase III subunit gamma/tau (EC 2.7...   149  4e-35
DP3X_MYCGE (P47659) DNA polymerase III subunit gamma (EC 2.7.7.7)     144  1e-33
DP3X_BUCAP (Q8K983) DNA polymerase III subunit gamma (EC 2.7.7.7)     137  2e-31
DP3X_MYCTU (P63975) DNA polymerase III subunit gamma/tau (EC 2.7...   136  3e-31
DP3X_MYCBO (P63976) DNA polymerase III subunit gamma/tau (EC 2.7...   136  3e-31
RFCS_SULTO (Q975D3) Replication factor C small subunit (RFC smal...    85  8e-16
RFCS_ARCFU (O28219) Replication factor C small subunit (RFC smal...    84  2e-15
RFCS_AERPE (Q9YBS7) Replication factor C small subunit (RFC smal...    82  7e-15
RFCS_SULSO (Q9UXF5) Replication factor C small subunit (RFC smal...    78  1e-13
RFS1_PYRAE (Q8ZYK4) Replication factor C small subunit 1 (RFC sm...    75  8e-13
RFCS_THEAC (Q9HI47) Replication factor C small subunit (RFC smal...    75  8e-13
RFCS_METTH (O26343) Replication factor C small subunit (RFC smal...    75  1e-12
RFCS_METAC (Q8TSX5) Replication factor C small subunit (RFC smal...    74  2e-12
RFCS_PICTO (Q6L1I0) Replication factor C small subunit (RFC smal...    72  5e-12

>DP3X_BACSU (P09122) DNA polymerase III subunit gamma/tau (EC
           2.7.7.7)
          Length = 563

 Score =  179 bits (454), Expect = 3e-44
 Identities = 113/387 (29%), Positives = 194/387 (49%), Gaps = 12/387 (3%)

Query: 297 RSLSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALN 356
           ++L   FRP  F D+VGQ  + ++L  A+ +   +  YLF GPRGTGKTSA++IFA A+N
Sbjct: 4   QALYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVN 63

Query: 357 CLSVEGQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNACIPPISSRFKVF 416
           C      +PC  C  C    +G   +V E+D+   N  D+++ +       P +  +KV+
Sbjct: 64  CEHAPVDEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTYKVY 123

Query: 417 IIDECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDADI 476
           IIDE  +L    + +L   LE   EH +F++ T +  K+P + +SR Q + F ++    I
Sbjct: 124 IIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITSQAI 183

Query: 477 ACRLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQ-LSLLGKKIKLSLVHELTGI 535
             R+ KI   E L  ++ +L+ IA+ + G +RDA  +LDQ +S  G  +K+     +TG 
Sbjct: 184 VGRMNKIVDAEQLQVEEGSLEIIASAAHGGMRDALSLLDQAISFSGDILKVEDALLITGA 243

Query: 536 VSDDELLNLLDLALSSDTSNTVIRARELMRSRIGPLQLVSQLANLIMDILAGKCVDGGSE 595
           VS   +  L       + S+ +    EL++    P +L+  +     D+L  K   G   
Sbjct: 244 VSQLYIGKLAKSLHDKNVSDALETLNELLQQGKDPAKLIEDMIFYFRDMLLYKTAPGLEG 303

Query: 596 VRSKFS-----GRYTSEADLQKLSRAVRILSEAEKQLRISKNQTTWLTVALLQL------ 644
           V  K          + +   Q L   + IL+++ ++++ + +   +  VA++++      
Sbjct: 304 VLEKVKVDETFRELSEQIPAQALYEMIDILNKSHQEMKWTNHPRIFFEVAVVKICQTSHQ 363

Query: 645 SSVDYPSVDVNDTKLCLREQSMEHLAT 671
           S+ D P VD+   K+   EQ +E L T
Sbjct: 364 SAADLPEVDMLMKKIQQLEQEVERLKT 390


>DP3X_BUCBP (Q89A95) DNA polymerase III subunit gamma (EC 2.7.7.7)
          Length = 370

 Score =  157 bits (397), Expect = 1e-37
 Identities = 98/358 (27%), Positives = 184/358 (51%), Gaps = 8/358 (2%)

Query: 299 LSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALNCL 358
           L+ K+RP +F+D++GQ  +V ++  ++  G I   +LF G RGTGKT+ +RI A +LNC 
Sbjct: 6   LAKKWRPQTFNDVIGQQYIVSAISNSLLLGRIHHAWLFFGIRGTGKTTIARILAKSLNCK 65

Query: 359 SVEGQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNACIPPISSRFKVFII 418
                 PC  C  CV    G   ++ EVD+    + + +K L+ N    P   RFK+++I
Sbjct: 66  LGISPNPCRKCSNCVEVEQGNFIDLYEVDAASRTKVEDMKELLDNIRYLPSKGRFKIYLI 125

Query: 419 DECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDADIAC 478
           DE  +L   ++  L  N+E   +H+ F++ T +L+K+P + +SR   +    +   +I  
Sbjct: 126 DEVHMLSRYSFNFLLKNIEEPPQHIKFILATTNLEKIPDTILSRCLQFQLKPINLNEIVA 185

Query: 479 RLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQLSLLGK-KIKLSLVHELTGIVS 537
            +  I  +E + ++  AL  I+ KS GS+RDA  + +Q+  +GK  I   +V +  G++ 
Sbjct: 186 CISNILHKENITYEIKALSLISQKSEGSLRDAITLTEQMISMGKGNITEKIVRKTLGMLY 245

Query: 538 DDELLNLLDLALSSDTSNTVIRARELMRSRIGPLQLVSQLANLIMDILAGKCVDGGSEVR 597
           +D++L +L   L+ D  N V+  + +  + I    ++ ++  L+  I   K +       
Sbjct: 246 EDQILYILTTLLNKDLKNLVLCFKYISDTHINFENILVEILQLLHQISIIKIIPSIKLND 305

Query: 598 SKFSGRYTSE----ADLQKLSRAVRILSEA---EKQLRISKNQTTWLTVALLQLSSVD 648
           +K+S          A+L   +        A   +K+L I+ +Q   + + LL++ +++
Sbjct: 306 TKYSKNMQHAIQKIAELSNYNDIYLYYQTALLGKKELHIAPDQKISIEMTLLRMFNLN 363


>DP3X_ECOLI (P06710) DNA polymerase III subunit tau (EC 2.7.7.7)
           [Contains: DNA polymerase III subunit gamma]
          Length = 643

 Score =  154 bits (388), Expect = 1e-36
 Identities = 87/255 (34%), Positives = 137/255 (53%), Gaps = 1/255 (0%)

Query: 299 LSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALNCL 358
           L+ K+RP +F+D+VGQ  V+ +L   +S G I   YLF G RG GKTS +R+ A  LNC 
Sbjct: 6   LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65

Query: 359 SVEGQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNACIPPISSRFKVFII 418
           +     PCG+C  C     GR  ++ E+D+    + +  + L+ N    P   RFKV++I
Sbjct: 66  TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125

Query: 419 DECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDADIAC 478
           DE  +L   ++ +L   LE   EHV F++ T D  KLP + +SR   +H   +    I  
Sbjct: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185

Query: 479 RLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQLSLLGK-KIKLSLVHELTGIVS 537
           +LE I  EE +  +  AL  +A  + GS+RDA  + DQ    G  ++    V  + G + 
Sbjct: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245

Query: 538 DDELLNLLDLALSSD 552
           DD+ L+L++  + ++
Sbjct: 246 DDQALSLVEAMVEAN 260


>DP3X_HAEIN (P43746) DNA polymerase III subunit gamma/tau (EC
           2.7.7.7)
          Length = 688

 Score =  151 bits (382), Expect = 7e-36
 Identities = 96/352 (27%), Positives = 174/352 (49%), Gaps = 13/352 (3%)

Query: 299 LSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALNCL 358
           L+ K+RP +F+D+VGQ  ++ +L   +    +   YLF G RG GKTS +R+FA  LNC+
Sbjct: 6   LARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNCV 65

Query: 359 SVEGQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNACIPPISSRFKVFII 418
                 PCG C  C     G   ++ E+D+    + +  + L+ N    P+  RFKV++I
Sbjct: 66  HGVTATPCGECENCKAIEQGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVVGRFKVYLI 125

Query: 419 DECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDADIAC 478
           DE  +L   ++ +L   LE   E+V F++ T D  KLP + +SR   +H   + +  I+ 
Sbjct: 126 DEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKALDETQISQ 185

Query: 479 RLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQLSLLG-KKIKLSLVHELTGIVS 537
            L  I  +E + F+  AL  +A  + GS+RD+  + DQ   +G +++  ++V  + G++ 
Sbjct: 186 HLAHILTQENIPFEDPALVKLAKAAQGSIRDSLSLTDQAIAMGDRQVTNNVVSNMLGLLD 245

Query: 538 DDELLNLLDLALSSDTSNTVIRARELMRSRIGPL-QLVSQLAN-----LIMDILAGKCVD 591
           D+  +++L  AL       ++R  + +    G   +L+ + A       +M +L  K  D
Sbjct: 246 DNYSVDIL-YALHQGNGELLMRTLQRVADAAGDWDKLLGECAEKLHQIALMQLLPQKSSD 304

Query: 592 GGSEVRSKFSGRYTSEADLQKLSRAVRILSEAEKQLRISKNQTTWLTVALLQ 643
                   F  ++ S  ++Q      +++    K L  + N+     + LL+
Sbjct: 305 NNEHF--SFLAKHISPENVQFF---YQVIVSGRKDLSNAPNRRIGAEMTLLR 351


>DP3X_SALTY (P74876) DNA polymerase III subunit tau (EC 2.7.7.7)
           [Contains: DNA polymerase III subunit gamma]
          Length = 642

 Score =  151 bits (381), Expect = 9e-36
 Identities = 85/255 (33%), Positives = 136/255 (53%), Gaps = 1/255 (0%)

Query: 299 LSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALNCL 358
           L+ K+RP +F+D+VGQ  V+ +L   +S G I   YLF G RG GKTS +R+ A  LNC 
Sbjct: 6   LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65

Query: 359 SVEGQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNACIPPISSRFKVFII 418
           +     PCG+C  C     GR  ++ E+D+    + +  + L+ N    P   RFKV++I
Sbjct: 66  TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125

Query: 419 DECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDADIAC 478
           DE  +L   ++ +L   LE    HV F++ T D  KLP + +SR   +H   +    I  
Sbjct: 126 DEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185

Query: 479 RLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQLSLLGK-KIKLSLVHELTGIVS 537
           +LE I  EE +  +  AL  ++  + GS+RDA  + DQ    G  ++    V  + G + 
Sbjct: 186 QLEHILNEEHIAHEPRALQLLSRAADGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245

Query: 538 DDELLNLLDLALSSD 552
           DD+ L+L++  + ++
Sbjct: 246 DDQALSLVEAVVDAN 260


>DP3X_BUCAI (P57553) DNA polymerase III subunit gamma (EC 2.7.7.7)
          Length = 361

 Score =  149 bits (377), Expect = 3e-35
 Identities = 95/358 (26%), Positives = 183/358 (50%), Gaps = 14/358 (3%)

Query: 299 LSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALNCL 358
           L+ K+RP  F D++GQ  +V ++   +S G I   +L  G RG GKT+ +R+ A +LNC 
Sbjct: 6   LARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGIGKTTIARLLAKSLNCQ 65

Query: 359 SVEGQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNACIPPISSRFKVFII 418
           +     PC  C  C     G   +V E+D     + ++++ ++ +    PI SRFKV++I
Sbjct: 66  NGITSDPCRQCIICKEIEKGLCLDVIEIDGASRTKVEEMREILDSIYYSPIKSRFKVYLI 125

Query: 419 DECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDADIAC 478
           DE  +L   ++ +L   LE   EHV FV+ T D+D++P++ +SR   +    + +  I  
Sbjct: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFVLATTDVDRIPKTIISRCLYFKLQIISEEKIFK 185

Query: 479 RLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQLSLLGK-KIKLSLVHELTGIVS 537
            L+ I ++E +D D+ +L  IA  + GS+RDA  +L+    LG   + +  V ++ G++ 
Sbjct: 186 FLKYILIKESIDTDEYSLKKIAYHAHGSIRDALNLLEHAINLGNGHVNIKNVTDMLGLLP 245

Query: 538 DDELLNLLDLALSSDTSNTVIRARELMRSRIGPLQLVSQLANLIMDILAGKCVDGGSEVR 597
           +     L D  L  D+  T++   ++    +   +++ ++   +  I   +      E  
Sbjct: 246 EKYSFLLTDAVLKKDSKKTMLLLNKISSIGVEWEEILIEMLRFLYHISTSQSFPLVWE-- 303

Query: 598 SKFSGRYTSEADLQKLSR---------AVRILSEAEKQLRISKNQTTWLTVALLQLSS 646
             F+ +Y ++  +QK+++           +IL    K+L+ + +Q   + ++LL++ S
Sbjct: 304 KIFTEKYKNQ--IQKIAQNNKKTNIQLCYQILLNGRKELKFAPSQKIGVEMSLLRVIS 359


>DP3X_MYCPN (P75177) DNA polymerase III subunit gamma/tau (EC
           2.7.7.7)
          Length = 681

 Score =  149 bits (375), Expect = 4e-35
 Identities = 85/288 (29%), Positives = 151/288 (51%), Gaps = 3/288 (1%)

Query: 299 LSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALNCL 358
           L  K+RP  FSD VGQ+ + R ++ AI++  +   Y+F G RGTGKT+ ++I A A+NCL
Sbjct: 5   LYQKYRPTKFSDTVGQDSIKRIIVNAITQDQLPHGYIFAGERGTGKTTFAKIIAKAINCL 64

Query: 359 SVEGQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNACIPPISSRFKVFII 418
           +  G   C  C  C    S  + +V E+D+   N  + ++ L +N    P   + KV+I+
Sbjct: 65  NWNGDV-CNQCEACQAINSNSAIDVFEIDAASKNGINDIRELAENVFNLPFKFKKKVYIL 123

Query: 419 DECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDADIAC 478
           DE  +L  ++W+ L   LE   ++V+F+  T + +K+P + +SR Q++ F ++ +  I  
Sbjct: 124 DEAHMLTPQSWSGLLKTLEEAPDYVLFIFATTEFNKIPITILSRCQSFFFKQITNDLIQQ 183

Query: 479 RLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQLSLL--GKKIKLSLVHELTGIV 536
           RL ++  +E +     AL  +A  + GS+RD   +LDQ+S     K I L+ V +   ++
Sbjct: 184 RLAEVAAKESIKITTDALVKLADLAQGSLRDGLSLLDQISNFSESKTISLADVEKTFNLL 243

Query: 537 SDDELLNLLDLALSSDTSNTVIRARELMRSRIGPLQLVSQLANLIMDI 584
             ++    ++  LS D   +           I  +  + +L  L +D+
Sbjct: 244 DKEQKFGFIEAVLSGDLKQSFHLIDNFESQGINFVHFLRELFALTVDL 291


>DP3X_MYCGE (P47659) DNA polymerase III subunit gamma (EC 2.7.7.7)
          Length = 260

 Score =  144 bits (363), Expect = 1e-33
 Identities = 83/246 (33%), Positives = 141/246 (56%), Gaps = 4/246 (1%)

Query: 302 KFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALNCLSVE 361
           K+RP +F   +GQ  + + L+ AI+R  + + Y+F G RGTGKT+ ++I A A+NCL+ +
Sbjct: 8   KYRPINFKQTLGQESIRKILVNAINRDKLPNGYIFSGERGTGKTTFAKIIAKAINCLNWD 67

Query: 362 GQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNACIPPISSRFKVFIIDEC 421
               C  C  C    +  + ++ E+D+   N  + ++ LV+N    P + + KV+I+DE 
Sbjct: 68  QIDVCNSCDVCKSINTNSAIDIVEIDAASKNGINDIRELVENVFNHPFTFKKKVYILDEA 127

Query: 422 QLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDADIACRLE 481
            +L  ++W  L   LE    +V+F+  T + +K+P + +SR Q++ F K+    I  RL 
Sbjct: 128 HMLTTQSWGGLLKTLEESPPYVLFIFTTTEFNKIPLTILSRCQSFFFKKITSDLILERLN 187

Query: 482 KICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQL--SLLGKKIKLSLVHELTGIVSDD 539
            I  +E +  ++ AL  IA  S GS+RD   +LDQL  SL+ KK+ L ++ +   ++S  
Sbjct: 188 DIAKKEKIKIEKDALIKIADLSQGSLRDGLSLLDQLAISLIVKKLVLLMLKK--HLISLI 245

Query: 540 ELLNLL 545
           E+ NLL
Sbjct: 246 EMQNLL 251


>DP3X_BUCAP (Q8K983) DNA polymerase III subunit gamma (EC 2.7.7.7)
          Length = 363

 Score =  137 bits (344), Expect = 2e-31
 Identities = 82/272 (30%), Positives = 139/272 (50%), Gaps = 3/272 (1%)

Query: 299 LSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALNCL 358
           L+ K+RP SF  ++GQ  +V+++    S G I   +L  G RG GKT+ +R+ A +LNC 
Sbjct: 6   LARKWRPQSFKKIIGQKYIVKAISNGFSLGKIHHAWLLSGTRGVGKTTIARLIAKSLNCE 65

Query: 359 SVEGQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNACIPPISSRFKVFII 418
                 PC  C  C     G   +  E+D+    + ++++ ++ N    P  SRFKV++I
Sbjct: 66  IGITSLPCRKCTICQEIEKGICLDFIEIDAASRTKVEEIREILDNIYYTPSKSRFKVYLI 125

Query: 419 DECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDADIAC 478
           DE  +L   ++ +L   LE   +H+ F++ T D++K+P++  SR   +    + + DI  
Sbjct: 126 DEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTIRSRCLHFKLNILSEEDIFN 185

Query: 479 RLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQLSLLGK-KIKLSLVHELTGIVS 537
            L+ I  + G +FD+ AL  I+  + GS+RDA  +L+    L K  I L    E+ GI +
Sbjct: 186 FLKHILKKGGNNFDEEALKIISDYANGSMRDALNLLEHAMHLSKNNINLKNTTEMLGIPN 245

Query: 538 DDELLNLLDLALSSDTSNTVIRARELMRSRIG 569
                 L    L  D+   +    ++  S+IG
Sbjct: 246 KKHAFLLTKFLLEQDSKKMMCLLNKI--SKIG 275


>DP3X_MYCTU (P63975) DNA polymerase III subunit gamma/tau (EC
           2.7.7.7)
          Length = 578

 Score =  136 bits (342), Expect = 3e-31
 Identities = 78/222 (35%), Positives = 115/222 (51%), Gaps = 2/222 (0%)

Query: 298 SLSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALNC 357
           +L  K+RP SF+++VGQ  V   L  A+  G I   YLF GPRG GKTS++RI A +LNC
Sbjct: 2   ALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLNC 61

Query: 358 LSVEGQKPCGLCRECVLFFSGR--SKEVKEVDSVRINRTDQVKSLVKNACIPPISSRFKV 415
                  PCG+C  CV        S +V E+D+      D  + L   A   P+ SR++V
Sbjct: 62  AQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYRV 121

Query: 416 FIIDECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDAD 475
           FI+DE  ++    + +L   +E   EH++F+  T + +K+  +  SR   Y F  +    
Sbjct: 122 FIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRT 181

Query: 476 IACRLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQL 517
           +   L +IC +EG+  D A    +     GS RD   +LDQL
Sbjct: 182 MRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQL 223


>DP3X_MYCBO (P63976) DNA polymerase III subunit gamma/tau (EC
           2.7.7.7)
          Length = 578

 Score =  136 bits (342), Expect = 3e-31
 Identities = 78/222 (35%), Positives = 115/222 (51%), Gaps = 2/222 (0%)

Query: 298 SLSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALNC 357
           +L  K+RP SF+++VGQ  V   L  A+  G I   YLF GPRG GKTS++RI A +LNC
Sbjct: 2   ALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLNC 61

Query: 358 LSVEGQKPCGLCRECVLFFSGR--SKEVKEVDSVRINRTDQVKSLVKNACIPPISSRFKV 415
                  PCG+C  CV        S +V E+D+      D  + L   A   P+ SR++V
Sbjct: 62  AQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYRV 121

Query: 416 FIIDECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDAD 475
           FI+DE  ++    + +L   +E   EH++F+  T + +K+  +  SR   Y F  +    
Sbjct: 122 FIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRT 181

Query: 476 IACRLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQL 517
           +   L +IC +EG+  D A    +     GS RD   +LDQL
Sbjct: 182 MRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQL 223


>RFCS_SULTO (Q975D3) Replication factor C small subunit (RFC small
           subunit) (Clamp loader small subunit)
          Length = 327

 Score = 85.1 bits (209), Expect = 8e-16
 Identities = 69/263 (26%), Positives = 121/263 (45%), Gaps = 19/263 (7%)

Query: 302 KFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALNCLSVE 361
           K+RP S  D+V Q  +V  L   +    +    LF GP GTGKT+A+    A ++ L  +
Sbjct: 12  KYRPRSLDDIVNQKDIVERLKRFVKDKNMPHL-LFSGPPGTGKTTAA---LALVHDLYGD 67

Query: 362 GQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNACIPPISSRFKVFIIDEC 421
             +          F    + + + +D +R N+  +    V    +P     FKV ++DE 
Sbjct: 68  NYRQ--------YFLELNASDERGIDVIR-NKVKEFARTVAGGNVP-----FKVVLLDEA 113

Query: 422 QLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDADIACRLE 481
             + A+   +L   +E  +E   F++    L K+     SR   + F  +K  D+  RL 
Sbjct: 114 DNMTADAQQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVARLA 173

Query: 482 KICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQLSLLGKKIKLSLVHELTGIVSDDEL 541
            I   E +++DQ AL+ I   + G +R A  +L   S+ G K+ +  V+++ G+    E+
Sbjct: 174 YIAKNEKVEYDQKALETIYDITQGDMRKAINILQASSVYG-KVTVEAVYKVLGLAQPKEI 232

Query: 542 LNLLDLALSSDTSNTVIRARELM 564
             ++ LAL  +      + REL+
Sbjct: 233 REMIMLALQGNFLKAREKLRELL 255


>RFCS_ARCFU (O28219) Replication factor C small subunit (RFC small
           subunit) (Clamp loader small subunit) (afRFC small
           subunit) (afRFCsm)
          Length = 319

 Score = 84.0 bits (206), Expect = 2e-15
 Identities = 66/263 (25%), Positives = 118/263 (44%), Gaps = 22/263 (8%)

Query: 302 KFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALNCLSVE 361
           K+RP +  ++VGQ+ V++ L G + R  I    LF GP GTGKT+ +   A  L   +  
Sbjct: 10  KYRPRTLDEVVGQDEVIQRLKGYVERKNIPHL-LFSGPPGTGKTATAIALARDLFGENWR 68

Query: 362 GQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNACIPPISSRFKVFIIDEC 421
                        F    + + + +D VR     ++K   + A  P   + FK+  +DE 
Sbjct: 69  DN-----------FIEMNASDERGIDVVR----HKIKEFARTA--PIGGAPFKIIFLDEA 111

Query: 422 QLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDADIACRLE 481
             L A+  A+L   +E  S+   F++    + ++     SR   + F  V    +  RL 
Sbjct: 112 DALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLL 171

Query: 482 KICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQLSLLGKKIKLSLVHELTGIVSDDEL 541
           +IC +EG+   +  L+ +   S G  R A   L   + +G+ +    ++++T     +E+
Sbjct: 172 EICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQITATARPEEM 231

Query: 542 LNLLDLALSSDTSNTVIRARELM 564
             L+  AL  +     + AREL+
Sbjct: 232 TELIQTALKGN----FMEARELL 250


>RFCS_AERPE (Q9YBS7) Replication factor C small subunit (RFC small
           subunit) (Clamp loader small subunit)
          Length = 346

 Score = 82.0 bits (201), Expect = 7e-15
 Identities = 74/264 (28%), Positives = 124/264 (46%), Gaps = 23/264 (8%)

Query: 302 KFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALNCLSVE 361
           K+RP S  D+V Q  VV  L   + +  +    LF GP GTGKT+A+   A  L      
Sbjct: 33  KYRPRSLDDIVDQKHVVERLKQFVKQRNMPHL-LFAGPPGTGKTTAAHALAHDLF----- 86

Query: 362 GQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNACIPPISSRFKVFIIDEC 421
           G+      R+ +L  +  + + + ++ +R    ++VK   ++   P I   FK+ ++DE 
Sbjct: 87  GEN----YRQYMLELN--ASDERGINVIR----EKVKEFARSRTPPEIP--FKIVLLDEA 134

Query: 422 QLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDADIACRLE 481
             + ++   +L   +E  S    F++I     K+     SR   + F  +   D+  RL 
Sbjct: 135 DNMTSDAQQALRRLMELYSSVTRFILIANYPSKIIDPIQSRCAFFRFQPLSKQDVIERLR 194

Query: 482 KICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQLSLLGKKIKLSLVHELTGIVSDDEL 541
            I   EG+D+++ ALD I   S G +R A  +L   S LG K+ +  V+ + G+    E+
Sbjct: 195 YIAENEGVDYEEEALDAIYEISEGDMRKAINVLQAASYLG-KVTVDAVYRVVGMAKPREV 253

Query: 542 LNLLDLALSSDTSNTVIRARELMR 565
             +L  AL  D +     AR L+R
Sbjct: 254 REMLATALKGDFT----AARSLLR 273


>RFCS_SULSO (Q9UXF5) Replication factor C small subunit (RFC small
           subunit) (Clamp loader small subunit) (SsoRFC small
           subunit)
          Length = 330

 Score = 77.8 bits (190), Expect = 1e-13
 Identities = 66/263 (25%), Positives = 119/263 (45%), Gaps = 19/263 (7%)

Query: 302 KFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALNCLSVE 361
           K+RP +  D+V Q  ++  L   +    +    LF GP GTGKT+A+    A ++ L  +
Sbjct: 13  KYRPKTLDDIVNQREIIDRLKKFVKEKNMPHL-LFAGPPGTGKTTAA---LALVHDLYGD 68

Query: 362 GQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNACIPPISSRFKVFIIDEC 421
                        F    + + + +D +R    ++VK   +   + P    FKV ++DE 
Sbjct: 69  NYTE--------YFLELNASDERGIDVIR----NKVKEFART--VIPGDIPFKVVLLDEA 114

Query: 422 QLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDADIACRLE 481
             + A+   +L   +E  +E+  F++    L K+     SR   + F  +K  D+  RL 
Sbjct: 115 DNMTADAQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLI 174

Query: 482 KICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQLSLLGKKIKLSLVHELTGIVSDDEL 541
            I   E  ++DQ AL+ I   + G +R +  +L   S  G KI +  V ++ G+    E+
Sbjct: 175 YIAKNEKAEYDQKALETIYDITMGDMRKSINILQAASAYG-KISVEAVFKVLGLAQPKEV 233

Query: 542 LNLLDLALSSDTSNTVIRARELM 564
             +++LAL    +    + R L+
Sbjct: 234 REMINLALQGKFTQARDKLRTLL 256


>RFS1_PYRAE (Q8ZYK4) Replication factor C small subunit 1 (RFC small
           subunit 1) (Clamp loader small subunit 1)
          Length = 329

 Score = 75.1 bits (183), Expect = 8e-13
 Identities = 65/264 (24%), Positives = 121/264 (45%), Gaps = 20/264 (7%)

Query: 302 KFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALNCLSVE 361
           K+RP SF ++V    V   L   +  G +    LF+GP GTGKT+ + + A  L      
Sbjct: 9   KYRPRSFDEVVDLEEVKARLREFVKAGNMPHL-LFYGPPGTGKTTMALVLARELY----- 62

Query: 362 GQKPCGLCRECVLFFSGRSKEVKEVDSVRINRT-DQVKSLVKNACIPPISSRFKVFIIDE 420
           G+           ++   + E+   D   IN   ++VK   + A  P   + FK+ I+DE
Sbjct: 63  GE-----------YWRENTLELNASDERGINVIRERVKEFARTA--PVGKAPFKLVILDE 109

Query: 421 CQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDADIACRL 480
              + ++   +L   +E  +++  F+++   + ++    +SR   + F  +  + +A RL
Sbjct: 110 ADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERL 169

Query: 481 EKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQLSLLGKKIKLSLVHELTGIVSDDE 540
           + I   EG++  + A++ I   S G +R A  +L   +   K +  + V      V   +
Sbjct: 170 KFIAKNEGVELREDAINMIYELSEGDMRKAINLLQVAAATNKVVDANAVASAAIAVRPAD 229

Query: 541 LLNLLDLALSSDTSNTVIRARELM 564
           ++ L +LA+S D      + RELM
Sbjct: 230 IIELFNLAISGDFVKAREKLRELM 253


>RFCS_THEAC (Q9HI47) Replication factor C small subunit (RFC small
           subunit) (Clamp loader small subunit)
          Length = 330

 Score = 75.1 bits (183), Expect = 8e-13
 Identities = 83/348 (23%), Positives = 151/348 (42%), Gaps = 44/348 (12%)

Query: 302 KFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALNCLSVE 361
           K+RP S S++ G++  ++ L   + +  I    LF G  GTGKTS +         L++E
Sbjct: 20  KYRPKSLSEIYGEDENIQKLKSFVEKKEIPHL-LFAGSVGTGKTSTAI-------ALAIE 71

Query: 362 GQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKN-ACIPPISSR-FKVFIID 419
                       LF     + + E+++   N  D +++ +K+ A I P +   FK+  +D
Sbjct: 72  ------------LFGDSWKENMVEMNASNENGIDVIRNKIKDIARIKPSNPLGFKILFLD 119

Query: 420 ECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDADIACR 479
           E   L AE  A+L   +E  SE   F+       K+     SR     F  V D  I+ +
Sbjct: 120 EADQLTAEAQAALRRTMEIYSETTRFIFSCNYSSKIIPPIQSRTVVMRFRPVPDEYISRK 179

Query: 480 LEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQLSLLGKKIKLSLVHELTGIVSDD 539
           L++I   EG   D+ ++  +   S G +R A  +L  +   G +I    ++E+ G  S +
Sbjct: 180 LQEIAKNEGFQIDEESMHALVEVSAGDMRKAINVLQAVYTSG-EISPKKIYEIIGYASPE 238

Query: 540 ELLNLLDLALSSDTSNTVIRARELMRSRIGPLQLVSQLANLIMDILAGKCVDGGSEVRSK 599
           ++  ++  A+    +     ARE++               LI D L+G  +     VRS 
Sbjct: 239 KIQKMISRAI----NGLFDEAREIVDGM------------LIYDGLSGIDI-----VRSL 277

Query: 600 FSGRYTSEADLQKLSRAVRILSEAEKQLRISKNQTTWLTVALLQLSSV 647
            S   +S    ++    ++ L++AE ++    N    L   + +L+ +
Sbjct: 278 HSYVRSSMISPKQKIEIIKALADAEFRIVEGSNDRIQLDALIAKLAEI 325


>RFCS_METTH (O26343) Replication factor C small subunit (RFC small
           subunit) (Clamp loader small subunit) (mthRFC small
           subunit)
          Length = 321

 Score = 74.7 bits (182), Expect = 1e-12
 Identities = 61/264 (23%), Positives = 116/264 (43%), Gaps = 21/264 (7%)

Query: 302 KFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALNCLSVE 361
           K+RP    D+VGQ  ++  L   +    + +  +F GP G GKT+A+   A A   L   
Sbjct: 11  KYRPQKLDDIVGQEHIIPRLKRYVEEKSMPNL-MFTGPAGVGKTTAA--LALAREILGEY 67

Query: 362 GQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNAC-IPPISSRFKVFIIDE 420
            ++          F    + + + +D+VR +        +KN C + P+ + F++  +DE
Sbjct: 68  WRQN---------FLELNASDARGIDTVRTS--------IKNFCRLKPVGAPFRIIFLDE 110

Query: 421 CQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDADIACRL 480
              +  +   +L   +E  ++   F++      K+     SR   + F  +K   I  RL
Sbjct: 111 VDNMTKDAQHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGHQIIKRL 170

Query: 481 EKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQLSLLGKKIKLSLVHELTGIVSDDE 540
           E I  +E L+++  AL+ I   + G +R A  +L   + LG+KI  S ++++       +
Sbjct: 171 EYIAEKENLEYEAHALETIVYFAEGDLRKAINLLQSAASLGEKITESSIYDVVSRARPKD 230

Query: 541 LLNLLDLALSSDTSNTVIRARELM 564
           +  ++   L           RE+M
Sbjct: 231 VRKMIKTILDGKFMEARDMLREIM 254


>RFCS_METAC (Q8TSX5) Replication factor C small subunit (RFC small
           subunit) (Clamp loader small subunit)
          Length = 338

 Score = 73.6 bits (179), Expect = 2e-12
 Identities = 67/266 (25%), Positives = 118/266 (44%), Gaps = 22/266 (8%)

Query: 302 KFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALNCLSVE 361
           K+RP   + + GQ+  +  L   ++   +    LF GP G GKT+++   A       + 
Sbjct: 18  KYRPVRLNQVAGQDETIERLKSYVATKNLPHL-LFSGPPGVGKTASAVSIAR-----EIF 71

Query: 362 GQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNACIPPISSRFKVFIIDEC 421
           G+    L RE   F    + + + +D VR    +++K+  K A  P   + FK+  +DE 
Sbjct: 72  GED---LWREN--FTELNASDERGIDIVR----NKIKNFAKTA--PIGGAPFKIIFLDEA 120

Query: 422 QLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDADIACRLE 481
             L A+  ++L   +E  S +  F++      K+     SR   Y F ++ D  I  RLE
Sbjct: 121 DALTADAQSALRRTMERFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDEAIKERLE 180

Query: 482 KICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQLSLL--GKKIKLSLVHELTGIVSDD 539
            I  ++GL   +   + +   + G +R A   L   + +   K I    ++  T   + +
Sbjct: 181 YIAGDQGLSITEGGYEALIYVAQGDMRKAVNSLQAAAFIDTDKSISRETIYRTTATANPE 240

Query: 540 ELLNLLDLALSSDTSNTVIRARELMR 565
           E+ NL++ AL     N  I  +EL R
Sbjct: 241 EIKNLIETAL---RGNFRIARKELNR 263


>RFCS_PICTO (Q6L1I0) Replication factor C small subunit (RFC small
           subunit) (Clamp loader small subunit)
          Length = 318

 Score = 72.4 bits (176), Expect = 5e-12
 Identities = 62/254 (24%), Positives = 109/254 (42%), Gaps = 19/254 (7%)

Query: 302 KFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALNCLSVE 361
           K+RP    D++G++  + +L   +  G +    +F GP GTGKTS +   A  +     +
Sbjct: 8   KYRPKRLDDVIGEDENINTLKSFVKNGDLPHL-IFAGPAGTGKTSTA--IALTIELFGDD 64

Query: 362 GQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNACIPPISSRFKVFIIDEC 421
            ++          F    + + + +D +R N  D  K    N         FK+  +DE 
Sbjct: 65  WKEN---------FLELNASDERGIDIIRNNIKDFAKIRPSNKL------GFKIIFLDEA 109

Query: 422 QLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDADIACRLE 481
             L  E  A+L   +E       F+       K+     SR     F  +    +  +L 
Sbjct: 110 DQLTNEAQAALRRTMEMFYSTTRFIFSCNYSSKIIPPIQSRCVVLRFRPLDKEAMERKLR 169

Query: 482 KICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQLSLLGKKIKLSLVHELTGIVSDDEL 541
           +I   E  D D  +LD I   S G +R A  ++  +   G +IK S ++E++G ++ +E 
Sbjct: 170 EIAKNEKFDIDDDSLDAIYEISDGDMRKAINVMQAIQSTG-EIKPSKIYEISGEINKNEY 228

Query: 542 LNLLDLALSSDTSN 555
            NL+ L+L+   S+
Sbjct: 229 KNLISLSLNGAFSD 242


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.317    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,506,154
Number of Sequences: 164201
Number of extensions: 4272841
Number of successful extensions: 11819
Number of sequences better than 10.0: 167
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 112
Number of HSP's that attempted gapping in prelim test: 11611
Number of HSP's gapped (non-prelim): 210
length of query: 919
length of database: 59,974,054
effective HSP length: 119
effective length of query: 800
effective length of database: 40,434,135
effective search space: 32347308000
effective search space used: 32347308000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 71 (32.0 bits)