BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0173a.1
         (217 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

YTX2_XENLA (P14381) Transposon TX1 hypothetical 149 kDa protein ...    62  1e-09
LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog               38  0.021
LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog               37  0.027
POL2_MOUSE (P11369) Retrovirus-related Pol polyprotein [Contains...    36  0.078
SYM_METMA (Q8PYJ4) Methionyl-tRNA synthetase (EC 6.1.1.10) (Meth...    33  0.51
SYD_BACHD (Q9KDG1) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar...    30  4.3
SYD_AQUAE (O67589) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar...    30  5.6
SYM_METAC (Q8TIU5) Methionyl-tRNA synthetase (EC 6.1.1.10) (Meth...    29  9.6

>YTX2_XENLA (P14381) Transposon TX1 hypothetical 149 kDa protein
           (ORF 2)
          Length = 1308

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 38/136 (27%), Positives = 67/136 (48%), Gaps = 1/136 (0%)

Query: 76  PRGCLQLTGDGF*KVKVEDKSMLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWD 135
           P  C +L  DG   V    K  LE   T +E+ + +     N++ G  G    FF+ FWD
Sbjct: 424 PDACEELW-DGLPVVSERRKERLETPITLDELSQALRLMPHNKSPGLDGLTIEFFQFFWD 482

Query: 136 IIKDDMMKLFVEFYEFGKLVEGLNLKFIALIPKKKILEAVSVYRPISLTGSIYILIAKDL 195
            +  D  ++  E ++ G+L        ++L+PKK  L  +  +RP+SL  + Y ++AK +
Sbjct: 483 TLGPDFHRVLTEAFKKGELPLSCRRAVLSLLPKKGDLRLIKNWRPVSLLSTDYKIVAKAI 542

Query: 196 T*RFHMVMPYLLSWNQ 211
           + R   V+  ++  +Q
Sbjct: 543 SLRLKSVLAEVIHPDQ 558


>LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog
          Length = 1260

 Score = 37.7 bits (86), Expect = 0.021
 Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 1/130 (0%)

Query: 89  KVKVEDKSMLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKLFVEF 148
           ++  ++  ML    +S EI   +      ++ GP GF   F++ F + +   ++ LF   
Sbjct: 439 RLSQKEVEMLNRPISSSEIASTIQNLPKKKSPGPDGFTSEFYQTFKEELVPILLNLFQNI 498

Query: 149 YEFGKLVEGLNLKFIALIPKK-KILEAVSVYRPISLTGSIYILIAKDLT*RFHMVMPYLL 207
            + G L        I LIPK  K       YRPISL      ++ K LT R    +  ++
Sbjct: 499 EKEGILPNTFYEANITLIPKPGKDPTRKENYRPISLMNIDAKILNKILTNRIQQHIKKII 558

Query: 208 SWNQFSFTKG 217
             +Q  F  G
Sbjct: 559 HHDQVGFIPG 568


>LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog
          Length = 1259

 Score = 37.4 bits (85), Expect = 0.027
 Identities = 31/127 (24%), Positives = 55/127 (42%), Gaps = 1/127 (0%)

Query: 89  KVKVEDKSMLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKLFVEF 148
           ++  E+   L    TS EI  ++ +    ++ GP GF   F++ + + +   ++KLF   
Sbjct: 439 RLNQEEVESLNRPITSSEIEAIINSLPNKKSPGPEGFTAEFYQRYKEELVPFLLKLFQSI 498

Query: 149 YEFGKLVEGLNLKFIALIPKK-KILEAVSVYRPISLTGSIYILIAKDLT*RFHMVMPYLL 207
            + G L        I LIPK  +       +RPISL      ++ K L  +    +  L+
Sbjct: 499 EKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANQIQQHIKKLI 558

Query: 208 SWNQFSF 214
             +Q  F
Sbjct: 559 HHDQVGF 565


>POL2_MOUSE (P11369) Retrovirus-related Pol polyprotein [Contains:
           Reverse transcriptase (EC 2.7.7.49); Endonuclease]
          Length = 1300

 Score = 35.8 bits (81), Expect = 0.078
 Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 1/130 (0%)

Query: 89  KVKVEDKSMLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKLFVEF 148
           K+  +    L    + +EI  V+ +    ++ GP GF+  F++ F + +   + KLF + 
Sbjct: 466 KLNQDQVDHLNSPISPKEIEAVINSLPTKKSPGPDGFSAEFYQTFKEDLIPILHKLFHKI 525

Query: 149 YEFGKLVEGLNLKFIALIPK-KKILEAVSVYRPISLTGSIYILIAKDLT*RFHMVMPYLL 207
              G L        I LIPK +K    +  +RPISL      ++ K L  R    +  ++
Sbjct: 526 EVEGTLPNSFYEATITLIPKPQKDPTKIENFRPISLMNIDAKILNKILANRIQEHIKAII 585

Query: 208 SWNQFSFTKG 217
             +Q  F  G
Sbjct: 586 HPDQVGFIPG 595


>SYM_METMA (Q8PYJ4) Methionyl-tRNA synthetase (EC 6.1.1.10)
           (Methionine--tRNA ligase) (MetRS)
          Length = 715

 Score = 33.1 bits (74), Expect = 0.51
 Identities = 23/75 (30%), Positives = 36/75 (47%), Gaps = 1/75 (1%)

Query: 94  DKSMLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKLFVEFYEFGK 153
           +K+++EV    EE +E   A D   AL  +G  +    E W +IK+D        Y    
Sbjct: 424 EKALVEVKAAMEE-YEFKKAVDSAMALASFGNTYFQSHEPWKLIKEDRDACGQVVYNCLH 482

Query: 154 LVEGLNLKFIALIPK 168
           L + L+L F  +IP+
Sbjct: 483 LAKALSLIFEPVIPQ 497


>SYD_BACHD (Q9KDG1) Aspartyl-tRNA synthetase (EC 6.1.1.12)
           (Aspartate--tRNA ligase) (AspRS)
          Length = 595

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 132 EFWDIIKDDMMKLFVEFYEFGKLVEGLNLKFIA-LIPKKKILEAVSVYRPISLTGSIYIL 190
           E  DI+KD   K+F    + G +V+GLNLK  A  + +K+I       +P    G  ++ 
Sbjct: 300 ELSDIVKDSDFKVFSSAIKSGGIVKGLNLKGGAGSLSRKEIDGLAEFVKPYGAKGLAWLK 359

Query: 191 I 191
           +
Sbjct: 360 V 360


>SYD_AQUAE (O67589) Aspartyl-tRNA synthetase (EC 6.1.1.12)
           (Aspartate--tRNA ligase) (AspRS)
          Length = 603

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 17/63 (26%), Positives = 31/63 (48%), Gaps = 1/63 (1%)

Query: 132 EFWDIIKDDMMKLFVEFYEFGKLVEGLNLKFIALIPKKKILEAVSVYRPISLTGSIYILI 191
           E  DI K+   K+F    E G +++ +N K  + + +K+I E     + +   G  +I +
Sbjct: 306 ELTDIFKNTAFKVFKSVVEAGGIIKAINFKG-SNLSRKEIDELTKFVQSLGAKGLAWIKV 364

Query: 192 AKD 194
            KD
Sbjct: 365 EKD 367


>SYM_METAC (Q8TIU5) Methionyl-tRNA synthetase (EC 6.1.1.10)
           (Methionine--tRNA ligase) (MetRS)
          Length = 712

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 6/84 (7%)

Query: 91  KVEDKSMLEVAFTSEEIWEVVI------ACDGNRALGPYGFNFIFFREFWDIIKDDMMKL 144
           K+E +   E+    +E+ E +       A D   AL  +G  +    E W +IK+D    
Sbjct: 414 KLEPEVSAEIEEALKEVKEAMAEYEFKKAVDSAMALASFGNTYFQSHEPWKLIKEDRSAC 473

Query: 145 FVEFYEFGKLVEGLNLKFIALIPK 168
               Y    L + L+L F  ++P+
Sbjct: 474 GQVIYNCLHLAKALSLIFEPVLPQ 497


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.346    0.159    0.520 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,134,344
Number of Sequences: 164201
Number of extensions: 862873
Number of successful extensions: 3357
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3352
Number of HSP's gapped (non-prelim): 8
length of query: 217
length of database: 59,974,054
effective HSP length: 106
effective length of query: 111
effective length of database: 42,568,748
effective search space: 4725131028
effective search space used: 4725131028
T: 11
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 63 (28.9 bits)