BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0172.5
(1213 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 555 e-157
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 362 3e-99
M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810... 165 6e-40
YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein 148 1e-34
YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein 129 6e-29
YMD9_YEAST (Q03434) Transposon Ty1 protein B 125 9e-28
YJZ7_YEAST (P47098) Transposon Ty1 protein B 125 9e-28
YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B) 122 6e-27
YME4_YEAST (Q04711) Transposon Ty1 protein B 120 3e-26
YJZ9_YEAST (P47100) Transposon Ty1 protein B 119 5e-26
YMU0_YEAST (Q04670) Transposon Ty1 protein B 117 2e-25
YMT5_YEAST (Q04214) Transposon Ty1 protein B 117 2e-25
M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820... 103 3e-21
M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240... 68 2e-10
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 58 2e-07
POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23... 55 2e-06
POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse transcript... 54 2e-06
POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.2... 52 7e-06
POL3_MOUSE (P11367) Retrovirus-related Pol polyprotein (Endonucl... 52 7e-06
POL_AVIRE (P03360) Pol polyprotein [Contains: Reverse transcript... 52 1e-05
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 555 bits (1431), Expect = e-157
Identities = 351/1049 (33%), Positives = 567/1049 (53%), Gaps = 53/1049 (5%)
Query: 199 KEDWYFDSGCSRHMTGVKSYLEKMKPHAKSFVTFGDGAKGKIRGIGKLSDTGSPN----L 254
+ +W D+ S H T V+ + V G+ + KI GIG + + L
Sbjct: 291 ESEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVL 350
Query: 255 DDVLLVEGLTANLISISQLCDQGLKVVFKQSGCVVKNKNKDVLMRGARSKDNCYMWTSET 314
DV V L NLIS L G + F + K V+ +G ++ Y +E
Sbjct: 351 KDVRHVPDLRMNLISGIALDRDGYESYFANQKWRL-TKGSLVIAKGV-ARGTLYRTNAE- 407
Query: 315 TFLSARCLMSKEDEVRI--WHQKLGHLNLKSMKRIVAEEAVRGIPKLKIQEGKVCGECQI 372
+ L + +DE+ + WH+++GH++ K ++ I+A++++ I K K C C
Sbjct: 408 --ICQGELNAAQDEISVDLWHKRMGHMSEKGLQ-ILAKKSL--ISYAKGTTVKPCDYCLF 462
Query: 373 GKQVKMSHQKLQHLTTSKVLELLHMDLMGPMQVESLGGKRYVFVCVDDFSRFTWVEFLKE 432
GKQ ++S Q + +L+L++ D+ GPM++ES+GG +Y +DD SR WV LK
Sbjct: 463 GKQHRVSFQTSSERKLN-ILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKT 521
Query: 433 KSDTFEVFKELCLQVQREKGSGIVKIRSDHGKEFENGQFSEFCSSEGIKHEFSAPITPQQ 492
K F+VF++ V+RE G + ++RSD+G E+ + +F E+CSS GI+HE + P TPQ
Sbjct: 522 KDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQH 581
Query: 493 NGVVERKNRTLQESARAMLHAKNLPYHFWAEAINTACYIHNRVTIRQGDTVTQYELWKGK 552
NGV ER NRT+ E R+ML LP FW EA+ TACY+ NR +W K
Sbjct: 582 NGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNK 641
Query: 553 KPTVKYFHVFGSKCYILSDREHRRKLDPKSEVGIFLGYSGNSRAYRVYNIRTKVMMESIN 612
+ + + VFG + + +E R KLD KS IF+GY YR+++ K ++ S +
Sbjct: 642 EVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRD 701
Query: 613 VV---------VDDTSNERTGQAHDEDDLPYECTNVEPDEPAIQFPNEQENTVSQPPLAT 663
VV D + + G + +P N E +EQ +
Sbjct: 702 VVFRESEVRTAADMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQG 761
Query: 664 KEPSIRVQKI-HPKENIIGDLNDGVITRS-RDLVSNACFISKV--------EPKNVKEAL 713
++ V+++ HP + G+ + RS R V + + S EP+++KE L
Sbjct: 762 EQLDEGVEEVEHPTQ---GEEQHQPLRRSERPRVESRRYPSTEYVLISDDREPESLKEVL 818
Query: 714 T---DEFWIQSMQEELGQFKRNEVWELVPRPDDANVVGTKWIFRNKSDESGNVTRNKSRL 770
+ +++MQEE+ ++N ++LV P + KW+F+ K D + R K+RL
Sbjct: 819 SHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARL 878
Query: 771 VAQGYSQIEGIDFYETFAPVARLESIRLLLGVACLLKFRLYQMDVKSAFLNGYLNEEVYV 830
V +G+ Q +GIDF E F+PV ++ SIR +L +A L + Q+DVK+AFL+G L EE+Y+
Sbjct: 879 VVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYM 938
Query: 831 EQPKGFVDPSFPDHVYRLKKALYGLKQAPRAWYERLTEFLINNGYDKGGIDKTLFVKK-N 889
EQP+GF V +L K+LYGLKQAPR WY + F+ + Y K D ++ K+ +
Sbjct: 939 EQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFS 998
Query: 890 GGELMVAQIYVDDIVFGGMSNQMVEQFVEQMKSEFEMSLVGELTYFLGLQV--KQMEDTL 947
++ +YVDD++ G ++ + + F+M +G LG+++ ++ L
Sbjct: 999 ENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKL 1058
Query: 948 FITQSKYAKGIVKKFGLENAGHKRTPAATHIKLTK-------DEKGTDVDPSLYRSMIGS 1000
+++Q KY + ++++F ++NA TP A H+KL+K +EKG ++ Y S +GS
Sbjct: 1059 WLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKG-NMAKVPYSSAVGS 1117
Query: 1001 LLY-LTASRPDITFAVGVCARYQAEPKTSHLIQVKRIIKYISGTSDYGILYSHNTNSGLT 1059
L+Y + +RPDI AVGV +R+ P H VK I++Y+ GT+ + + ++ L
Sbjct: 1118 LMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFG-GSDPILK 1176
Query: 1060 GYCDADWAGSADDRKSTSGGCFFLENNLISWFSKKQNCVSLSTAEAEYIAAGSSCTQLMW 1119
GY DAD AG D+RKS++G F ISW SK Q CV+LST EAEYIAA + +++W
Sbjct: 1177 GYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIW 1236
Query: 1120 MKQMLKEYNVQQDVMTLFCDNLSAINISKNPIQHSRTKHIDIRHHFIRELVEDGTVTLEH 1179
+K+ L+E + Q ++CD+ SAI++SKN + H+RTKHID+R+H+IRE+V+D ++ +
Sbjct: 1237 LKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLK 1296
Query: 1180 VSTEKQLADIFTKALDATQFEKLRQLLGI 1208
+ST + AD+ TK + +FE ++L+G+
Sbjct: 1297 ISTNENPADMLTKVVPRNKFELCKELVGM 1325
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 362 bits (930), Expect = 3e-99
Identities = 190/498 (38%), Positives = 302/498 (60%), Gaps = 10/498 (2%)
Query: 718 WIQSMQEELGQFKRNEVWELVPRPDDANVVGTKWIFRNKSDESGNVTRNKSRLVAQGYSQ 777
W +++ EL K N W + RP++ N+V ++W+F K +E GN R K+RLVA+G++Q
Sbjct: 906 WEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQ 965
Query: 778 IEGIDFYETFAPVARLESIRLLLGVACLLKFRLYQMDVKSAFLNGYLNEEVYVEQPKGFV 837
ID+ ETFAPVAR+ S R +L + +++QMDVK+AFLNG L EE+Y+ P+G
Sbjct: 966 KYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGIS 1025
Query: 838 DPSFPDHVYRLKKALYGLKQAPRAWYERLTEFLINNGYDKGGIDKTLFV--KKNGGELMV 895
S D+V +L KA+YGLKQA R W+E + L + +D+ +++ K N E +
Sbjct: 1026 CNS--DNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIY 1083
Query: 896 AQIYVDDIVFGGMSNQMVEQFVEQMKSEFEMSLVGELTYFLGLQVKQMEDTLFITQSKYA 955
+YVDD+V + F + +F M+ + E+ +F+G++++ ED ++++QS Y
Sbjct: 1084 VLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYV 1143
Query: 956 KGIVKKFGLENAGHKRTPAATHIKLTKDEKGTDVDPSLYRSMIGSLLY-LTASRPDITFA 1014
K I+ KF +EN TP + I D + RS+IG L+Y + +RPD+T A
Sbjct: 1144 KKILSKFNMENCNAVSTPLPSKINYELLNSDEDCNTPC-RSLIGCLMYIMLCTRPDLTTA 1202
Query: 1015 VGVCARYQAEPKTSHLIQVKRIIKYISGTSDYGILYSHNT--NSGLTGYCDADWAGSADD 1072
V + +RY ++ + +KR+++Y+ GT D +++ N + + GY D+DWAGS D
Sbjct: 1203 VNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEID 1262
Query: 1073 RKSTSGGCF-FLENNLISWFSKKQNCVSLSTAEAEYIAAGSSCTQLMWMKQMLKEYNVQ- 1130
RKST+G F + NLI W +K+QN V+ S+ EAEY+A + + +W+K +L N++
Sbjct: 1263 RKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKL 1322
Query: 1131 QDVMTLFCDNLSAINISKNPIQHSRTKHIDIRHHFIRELVEDGTVTLEHVSTEKQLADIF 1190
++ + ++ DN I+I+ NP H R KHIDI++HF RE V++ + LE++ TE QLADIF
Sbjct: 1323 ENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIF 1382
Query: 1191 TKALDATQFEKLRQLLGI 1208
TK L A +F +LR LG+
Sbjct: 1383 TKPLPAARFVELRDKLGL 1400
Score = 213 bits (542), Expect = 3e-54
Identities = 154/540 (28%), Positives = 275/540 (50%), Gaps = 46/540 (8%)
Query: 139 RCHYCGRFGHIRPYCFKLYGYPILQDVSREYEKK-----SPGKSRWKPKVNATALIAHTS 193
+CH+CGR GHI+ CF + IL + ++E EK+ S G + +VN T+++ +
Sbjct: 231 KCHHCGREGHIKKDCF--HYKRILNNKNKENEKQVQTATSHGIAFMVKEVNNTSVMDNCG 288
Query: 194 LRASSKEDWYFDSGCSRHMTGVKSY----LEKMKPHAKSFVTFGDGAKGKIRGIGKLSDT 249
+ DSG S H+ +S +E + P + G+ RGI +L +
Sbjct: 289 --------FVLDSGASDHLINDESLYTDSVEVVPPLKIAVAKQGEFIYATKRGIVRLRND 340
Query: 250 GSPNLDDVLLVEGLTANLISISQLCDQGLKVVFKQSGCVVKNKNKDVLMRGARSKDNCYM 309
L+DVL + NL+S+ +L + G+ + F +SG + +KN ++++ + +N +
Sbjct: 341 HEITLEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTI-SKNGLMVVKNSGMLNNVPV 399
Query: 310 WTSETTFLSARCLMSKEDEVRIWHQKLGHLN---LKSMKR--IVAEEAVRGIPKLKIQEG 364
+ ++A+ ++ R+WH++ GH++ L +KR + +++++ +L +
Sbjct: 400 INFQAYSINAK----HKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCE-- 453
Query: 365 KVCGECQIGKQVKMSHQKLQHLTTSK-VLELLHMDLMGPMQVESLGGKRYVFVCVDDFSR 423
+C C GKQ ++ ++L+ T K L ++H D+ GP+ +L K Y + VD F+
Sbjct: 454 -ICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTH 512
Query: 424 FTWVEFLKEKSDTFEVFKELCLQVQREKGSGIVKIRSDHGKEFENGQFSEFCSSEGIKHE 483
+ +K KSD F +F++ + + +V + D+G+E+ + + +FC +GI +
Sbjct: 513 YCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYH 572
Query: 484 FSAPITPQQNGVVERKNRTLQESARAMLHAKNLPYHFWAEAINTACYIHNRVTIRQ--GD 541
+ P TPQ NGV ER RT+ E AR M+ L FW EA+ TA Y+ NR+ R
Sbjct: 573 LTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDS 632
Query: 542 TVTQYELWKGKKPTVKYFHVFGSKCYILSDREHRRKLDPKSEVGIFLGYSGNSRAYRVYN 601
+ T YE+W KKP +K+ VFG+ Y+ + + K D KS IF+GY N +++++
Sbjct: 633 SKTPYEMWHNKKPYLKHLRVFGATVYV-HIKNKQGKFDDKSFKSIFVGYEPN--GFKLWD 689
Query: 602 IRTKVMMESINVVVDDTS--NERTGQAHD---EDDLPYECTNVEPDEPAI---QFPNEQE 653
+ + + +VVVD+T+ N R + +D E N D I +FPNE +
Sbjct: 690 AVNEKFIVARDVVVDETNMVNSRAVKFETVFLKDSKESENKNFPNDSRKIIQTEFPNESK 749
>M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810
(ORF240b)
Length = 240
Score = 165 bits (418), Expect = 6e-40
Identities = 85/227 (37%), Positives = 132/227 (57%), Gaps = 3/227 (1%)
Query: 894 MVAQIYVDDIVFGGMSNQMVEQFVEQMKSEFEMSLVGELTYFLGLQVKQMEDTLFITQSK 953
M +YVDDI+ G SN ++ + Q+ S F M +G + YFLG+Q+K LF++Q+K
Sbjct: 1 MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTK 60
Query: 954 YAKGIVKKFGLENAGHKRTPAATHIKLTKDEKGTDV-DPSLYRSMIGSLLYLTASRPDIT 1012
YA+ I+ G+ + TP +KL DPS +RS++G+L YLT +RPDI+
Sbjct: 61 YAEQILNNAGMLDCKPMSTPLP--LKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDIS 118
Query: 1013 FAVGVCARYQAEPKTSHLIQVKRIIKYISGTSDYGILYSHNTNSGLTGYCDADWAGSADD 1072
+AV + + EP + +KR+++Y+ GT +G+ N+ + +CD+DWAG
Sbjct: 119 YAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTST 178
Query: 1073 RKSTSGGCFFLENNLISWFSKKQNCVSLSTAEAEYIAAGSSCTQLMW 1119
R+ST+G C FL N+ISW +K+Q VS S+ E EY A + +L W
Sbjct: 179 RRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein
Length = 308
Score = 148 bits (373), Expect = 1e-34
Identities = 88/308 (28%), Positives = 154/308 (49%), Gaps = 3/308 (0%)
Query: 813 MDVKSAFLNGYLNEEVYVEQPKGFVDPSFPDHVYRLKKALYGLKQAPRAWYERLTEFLIN 872
MDV +AFLN ++E +YV+QP GFV+ PD+V+ L +YGLKQAP W E + L
Sbjct: 1 MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60
Query: 873 NGYDKGGIDKTLFVKKNGGELMVAQIYVDDIVFGGMSNQMVEQFVEQMKSEFEMSLVGEL 932
G+ + + L+ + + +YVDD++ S ++ ++ +++ + M +G++
Sbjct: 61 IGFCRHEGEHGLYFRSTSDGPIYIGVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120
Query: 933 TYFLGLQVKQMED-TLFITQSKYAKGIVKKFGLENAGHKRTPAATHIKLTKDEKGTDVDP 991
FLGL + Q + + ++ Y + + +TP L + D
Sbjct: 121 DKFLGLNIHQSTNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDI 180
Query: 992 SLYRSMIGSLLY-LTASRPDITFAVGVCARYQAEPKTSHLIQVKRIIKYISGTSDYGILY 1050
+ Y+S++G LL+ RPDI++ V + +R+ EP+ HL +R+++Y+ T + Y
Sbjct: 181 TPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKY 240
Query: 1051 SHNTNSGLTGYCDADWAGSADDRKSTSGGCFFLENNLISWFSKK-QNCVSLSTAEAEYIA 1109
+ LT YCDA D ST G L ++W SKK + + + + EAEYI
Sbjct: 241 RSGSQVALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEYIT 300
Query: 1110 AGSSCTQL 1117
A + ++
Sbjct: 301 ASETVMEI 308
>YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein
Length = 1803
Score = 129 bits (323), Expect = 6e-29
Identities = 132/516 (25%), Positives = 227/516 (43%), Gaps = 47/516 (9%)
Query: 720 QSMQEELGQFKRNEVWELVPR------PDDANVVGTKWIFRNKSDESGNVTRNKSRLVAQ 773
Q+ +EL K +V+++ + PD+ +V T IF K + K+R+V +
Sbjct: 1291 QAYHKELQNLKDMKVFDVDVKYSRSEIPDNL-IVPTNTIFTKKRNGI-----YKARIVCR 1344
Query: 774 GYSQIEGIDFYETFAPVARLES-IRLLLGVACLLKFRLYQMDVKSAFLNGYLNEEVYVEQ 832
G +Q D Y + + I++ L +A + +D+ AFL L EE+Y+
Sbjct: 1345 GDTQSP--DTYSVITTESLNHNHIKIFLMIANNRNMFMKTLDINHAFLYAKLEEEIYIPH 1402
Query: 833 PKGFVDPSFPDHVYRLKKALYGLKQAPRAWYERLTEFLINNGYDKGGIDKTLFVKKNGGE 892
P V +L KALYGLKQ+P+ W + L ++L G L+ ++
Sbjct: 1403 PHD------RRCVVKLNKALYGLKQSPKEWNDHLRQYLNGIGLKDNSYTPGLYQTEDKN- 1455
Query: 893 LMVAQIYVDDIVFGGMSNQMVEQFVEQMKSEFEMSLVGEL------TYFLGLQV--KQME 944
LM+A +YVDD V + Q +++F+ ++KS FE+ + G L T LG+ + +
Sbjct: 1456 LMIA-VYVDDCVIAASNEQRLDEFINKLKSNFELKITGTLIDDVLDTDILGMDLVYNKRL 1514
Query: 945 DTLFITQSKYAKGIVKKFGLENAGHKRTPAATHIKLTKDEKGTDV----------DPSLY 994
T+ +T + + KK+ E R + H+ K + DV
Sbjct: 1515 GTIDLTLKSFINRMDKKYN-EELKKIRKSSIPHMSTYKIDPKKDVLQMSEEEFRQGVLKL 1573
Query: 995 RSMIGSLLYLT-ASRPDITFAVGVCARYQAEPKTSHLIQVKRIIKYISGTSDYGILYSHN 1053
+ ++G L Y+ R DI FAV AR P + +II+Y+ D GI Y +
Sbjct: 1574 QQLLGELNYVRHKCRYDIEFAVKKVARLVNYPHERVFYMIYKIIQYLVRYKDIGIHYDRD 1633
Query: 1054 TNSG--LTGYCDADWAGSADDRKSTSGGCFFLENNLISWFSKKQNCVSLSTAEAEYIAAG 1111
N + DA GS D +S G + N+ + +S K +S+ EAE A
Sbjct: 1634 CNKDKKVIAITDAS-VGSEYDAQSRIGVILWYGMNIFNVYSNKSTNRCVSSTEAELHAIY 1692
Query: 1112 SSCTQLMWMKQMLKEYNV-QQDVMTLFCDNLSAINISKNPIQHSRTKHIDIRHHFIRELV 1170
+K LKE + + + D+ AI Q + K I+ I+E +
Sbjct: 1693 EGYADSETLKVTLKELGEGDNNDIVMITDSKPAIQGLNRSYQQPKEKFTWIKTEIIKEKI 1752
Query: 1171 EDGTVTLEHVSTEKQLADIFTKALDATQFEKLRQLL 1206
++ ++ L ++ + +AD+ TK + A+ F++ Q+L
Sbjct: 1753 KEKSIKLLKITGKGNIADLLTKPVSASDFKRFIQVL 1788
Score = 92.4 bits (228), Expect = 7e-18
Identities = 141/610 (23%), Positives = 236/610 (38%), Gaps = 82/610 (13%)
Query: 140 CHYCGRFGHIRPYCFK-----------LYGYPILQDVSREYEKKSPGKSRWKPKVNATAL 188
C YC H C K + PI+ V R+ SP ++ K N T
Sbjct: 342 CMYCKSVFHCSINCKKKPNRNLGLTRPISQKPIIYKVHRDNNHLSPVQNEQK-SWNKTQ- 399
Query: 189 IAHTSLRASSKEDWYFDSGCSRHMTGVKSYLEKMKPHAKSFVTFGDGAKGKI--RGIGKL 246
++ +SK+ D+G ++T K+ L + +S FG G + +G G +
Sbjct: 400 -KRSNKVYNSKKLVIIDTGSGVNITNDKTLLHNYEDSNRSTRFFGIGKNSSVSVKGYGYI 458
Query: 247 S-DTGSPNLDDVLL----VEGLTANLISI---------------SQLCDQGLKVVFKQSG 286
G N D+ L V + +IS ++L ++ +K+ K
Sbjct: 459 KIKNGHNNTDNKCLLTYYVPEEESTIISCYDLAKKTKMVLSRKYTRLGNKIIKIKTKIVN 518
Query: 287 CVVKNKNKDVLMRGAR-SKDNCYMWTSETTFLSARCLMSKEDEVRIWHQKLGHLNLKSMK 345
V+ K +++ R + SK N TS F + ++ ED H+++GH ++ ++
Sbjct: 519 GVIHVKMNELIERPSDDSKINAIKPTSSPGFKLNKRSITLEDA----HKRMGHTGIQQIE 574
Query: 346 RIVAEEAVR-GIPKLKIQEGKVCGECQIGKQVKMSH---QKLQHLTTSKVLELLHMDLMG 401
+ + +K C C+I K K +H H T + MD+ G
Sbjct: 575 NSIKHNHYEESLDLIKEPNEFWCQTCKISKATKRNHYTGSMNNHSTDHEPGSSWCMDIFG 634
Query: 402 PMQVESLGGKRYVFVCVDDFSRF--TWVEFLKEKSDTFEVFKELCLQVQREKGSGIVKIR 459
P+ + KRY+ + VD+ +R+ T F K ++ V+ + + +I
Sbjct: 635 PVSSSNADTKRYMLIMVDNNTRYCMTSTHFNKNAETILAQVRKNIQYVETQFDRKVREIN 694
Query: 460 SDHGKEFENGQFSEFCSSEGIKHEFSAPITPQQNGVVERKNRTLQESARAMLHAKNLPYH 519
SD G EF N Q E+ S+GI H ++ NG ER RT+ A +L NL
Sbjct: 695 SDRGTEFTNDQIEEYFISKGIHHILTSTQDHAANGRAERYIRTIITDATTLLRQSNLRVK 754
Query: 520 FWAEAINTACYIHNRVTIRQGDTVTQYELWKGKKPTVKY--FHVFGSKCYILSDREHRRK 577
FW A+ +A I N + + + + + + TV+ F FG K I + + +K
Sbjct: 755 FWEYAVTSATNIRNYLEHKSTGKLPLKAISR-QPVTVRLMSFLPFGEKGIIWN--HNHKK 811
Query: 578 LDPKSEVGIFLGYSGNSRAYRVYNIRTKVMMESINVVVD--------------DTSNERT 623
L P I L NS Y+ + ++ S N + + S++ +
Sbjct: 812 LKPSGLPSIILCKDPNSYGYKFFIPSKNKIVTSDNYTIPNYTMDGRVRNTQNINKSHQFS 871
Query: 624 GQAHDEDDLPYECTNV-------EPDEPAIQFPNE--QENTVSQPPLATKEPSIRVQKIH 674
DE+D TN+ E D I + E +SQ K PS
Sbjct: 872 SDNDDEEDQIETVTNLCEALENYEDDNKPITRLEDLFTEEELSQIDSNAKYPS------- 924
Query: 675 PKENIIGDLN 684
P N+ GDL+
Sbjct: 925 PSNNLEGDLD 934
>YMD9_YEAST (Q03434) Transposon Ty1 protein B
Length = 1328
Score = 125 bits (313), Expect = 9e-28
Identities = 126/531 (23%), Positives = 234/531 (43%), Gaps = 58/531 (10%)
Query: 707 KNVKEALTDEFWIQSMQEELGQFKRNEVW---ELVPRP--DDANVVGTKWIFRNKSDESG 761
K++KE E +I++ +E+ Q + + W E R D V+ + +IF K D +
Sbjct: 815 KDIKEK---EKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFIFNKKRDGT- 870
Query: 762 NVTRNKSRLVAQGYSQIEGIDFYETFAPVARLESIRLLLGVACLLKFRLY--QMDVKSAF 819
+K+R VA+G I+ D Y++ + L+ ++ L Y Q+D+ SA+
Sbjct: 871 ----HKARFVARG--DIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAY 924
Query: 820 LNGYLNEEVYVEQPKGFVDPSFPDHVYRLKKALYGLKQAPRAWYERLTEFLINN-GYDKG 878
L + EE+Y+ P D + RLKK+LYGLKQ+ WYE + +LI G ++
Sbjct: 925 LYADIKEELYIRPPPHL---GMNDKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEE- 980
Query: 879 GIDKTLFVKKNGGELMVAQIYVDDIVFGGMSNQMVEQFVEQMKSEFEMSLVGELTYFLGL 938
+ V KN + ++VDD++ ++ + +K +++ ++ LG
Sbjct: 981 -VRGWSCVFKN--SQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIIN-----LGE 1032
Query: 939 QVKQMEDTLFITQSKYAKGIVKKFGLENAGHKRTP--------------AATHIKLTKDE 984
+++ + + KY +G K G+EN+ ++ P A L D+
Sbjct: 1033 SDNEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQ 1092
Query: 985 KGTDVDPSLYR-------SMIGSLLYLTAS-RPDITFAVGVCARYQAEPKTSHLIQVKRI 1036
++D Y+ +IG Y+ R D+ + + A++ P L +
Sbjct: 1093 DELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYEL 1152
Query: 1037 IKYISGTSDYGILYSHN----TNSGLTGYCDADWAGSADDRKSTSGGCFFLENNLISWFS 1092
I+++ T D +++ N ++ L DA + G+ KS G + L +I S
Sbjct: 1153 IQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNIYLLNGKVIGGKS 1211
Query: 1093 KKQNCVSLSTAEAEYIAAGSSCTQLMWMKQMLKEYNVQQDVMTLFCDNLSAINISKNPIQ 1152
K + ST EAE A S L + +++E N + + L D+ S I+I K+ +
Sbjct: 1212 TKASLTCTSTTEAEIHAISESVPLLNNLSYLIQELNKKPIIKGLLTDSRSTISIIKSTNE 1271
Query: 1153 HS-RTKHIDIRHHFIRELVEDGTVTLEHVSTEKQLADIFTKALDATQFEKL 1202
R + + +R+ V + + ++ T+K +AD+ TK L F+ L
Sbjct: 1272 EKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTFKLL 1322
Score = 99.8 bits (247), Expect = 4e-20
Identities = 112/526 (21%), Positives = 196/526 (36%), Gaps = 65/526 (12%)
Query: 205 DSGCSRHMTGVKSYLEKMKPHAKSFVTFGDGAKGKIRGIGKLSDTGSPNLDD---VLLVE 261
DSG SR + ++ + V I IG L N VL
Sbjct: 34 DSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHTP 93
Query: 262 GLTANLISISQLCDQGLKVVFKQSGCVVKNKNKDVLMRGARSKDNCYMWTSETTFLSARC 321
+ +L+S+++L + F ++ V++ + VL + D + W S+ L +
Sbjct: 94 NIAYDLLSLNELAAVDITACFTKN--VLERSDGTVLAPIVKYGD--FYWVSKKYLLPSNI 149
Query: 322 LMSKEDEVR-----------IWHQKLGHLNLKSMKRIVAEEAVRGIPKLKIQEGKV---- 366
+ + V H+ L H N ++++ + + + +
Sbjct: 150 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDRSSAIDYQ 209
Query: 367 CGECQIGKQVKMSHQK---LQHLTTSKVLELLHMDLMGPMQVESLGGKRYVFVCVDDFSR 423
C +C IGK K H K L++ + + + LH D+ GP+ Y D+ ++
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 269
Query: 424 FTWVEFLKEKSDT--FEVFKELCLQVQREKGSGIVKIRSDHGKEFENGQFSEFCSSEGIK 481
F WV L ++ + +VF + ++ + + ++ I+ D G E+ N +F GI
Sbjct: 270 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 329
Query: 482 HEFSAPITPQQNGVVERKNRTLQESARAMLHAKNLPYHFWAEAINTACYIHNRV-TIRQG 540
++ + +GV ER NRTL + R L LP H W AI + + N + + +
Sbjct: 330 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 389
Query: 541 DTVTQYELWKGKKPTVKYFHVFGSKCYILSDREHRRKLDPKSEVGIFLGYSGNSRAYRVY 600
+ Q+ G + FG I++D K+ P+ G L S NS Y +Y
Sbjct: 390 KSARQHAGLAGL--DISTLLPFGQP-VIVNDHNPNSKIHPRGIPGYALHPSRNSYGYIIY 446
Query: 601 NIRTKVMMESINVVV------------------DDTSNERT---------GQAHDEDDLP 633
K +++ N V+ D+ N T + DDL
Sbjct: 447 LPSLKKTVDTTNYVILQGKESRLDQFNYDALTFDEDLNRLTASYQSFIASNEIQQSDDLN 506
Query: 634 YECTN-------VEPDEPAIQFPNEQENTVSQPPLATKEPSIRVQK 672
E + + P++P T S PP E S RV K
Sbjct: 507 IESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSK 552
>YJZ7_YEAST (P47098) Transposon Ty1 protein B
Length = 1755
Score = 125 bits (313), Expect = 9e-28
Identities = 127/531 (23%), Positives = 233/531 (42%), Gaps = 58/531 (10%)
Query: 707 KNVKEALTDEFWIQSMQEELGQFKRNEVW---ELVPRP--DDANVVGTKWIFRNKSDESG 761
K++KE E +I++ +E+ Q + + W E R D V+ + +IF K D +
Sbjct: 1242 KDIKEK---EKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFIFNKKRDGT- 1297
Query: 762 NVTRNKSRLVAQGYSQIEGIDFYETFAPVARLESIRLLLGVACLLKFRLY--QMDVKSAF 819
+K+R VA+G I+ D Y+T + L+ ++ L Y Q+D+ SA+
Sbjct: 1298 ----HKARFVARG--DIQHPDTYDTGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAY 1351
Query: 820 LNGYLNEEVYVEQPKGFVDPSFPDHVYRLKKALYGLKQAPRAWYERLTEFLINN-GYDKG 878
L + EE+Y+ P D + RLKK+ YGLKQ+ WYE + +LI G ++
Sbjct: 1352 LYADIKEELYIRPPPHL---GMNDKLIRLKKSHYGLKQSGANWYETIKSYLIKQCGMEE- 1407
Query: 879 GIDKTLFVKKNGGELMVAQIYVDDIVFGGMSNQMVEQFVEQMKSEFEMSLVGELTYFLGL 938
+ V KN + ++VDD++ ++ + +K +++ ++ LG
Sbjct: 1408 -VRGWSCVFKN--SQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIIN-----LGE 1459
Query: 939 QVKQMEDTLFITQSKYAKGIVKKFGLENAGHKRTP--------------AATHIKLTKDE 984
+++ + + KY +G K G+EN+ ++ P A L D+
Sbjct: 1460 SDNEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQ 1519
Query: 985 KGTDVDPSLYR-------SMIGSLLYLTAS-RPDITFAVGVCARYQAEPKTSHLIQVKRI 1036
++D Y+ +IG Y+ R D+ + + A++ P L +
Sbjct: 1520 DELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYEL 1579
Query: 1037 IKYISGTSDYGILYSHN----TNSGLTGYCDADWAGSADDRKSTSGGCFFLENNLISWFS 1092
I+++ T D +++ N ++ L DA + G+ KS G F L +I S
Sbjct: 1580 IQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNIFLLNGKVIGGKS 1638
Query: 1093 KKQNCVSLSTAEAEYIAAGSSCTQLMWMKQMLKEYNVQQDVMTLFCDNLSAINISKNPIQ 1152
K + ST EAE A S L + +++E N + + L D+ S I+I K+ +
Sbjct: 1639 TKASLTCTSTTEAEIHAISESVPLLNNLSYLIQELNKKPIIKGLLTDSRSTISIIKSTNE 1698
Query: 1153 HS-RTKHIDIRHHFIRELVEDGTVTLEHVSTEKQLADIFTKALDATQFEKL 1202
R + + +R+ V + + ++ T+K +AD+ TK L F+ L
Sbjct: 1699 EKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTFKLL 1749
Score = 97.1 bits (240), Expect = 3e-19
Identities = 96/445 (21%), Positives = 174/445 (38%), Gaps = 31/445 (6%)
Query: 205 DSGCSRHMTGVKSYLEKMKPHAKSFVTFGDGAKGKIRGIGKLSDTGSPNLDD---VLLVE 261
DSG SR + ++ + V I IG L N VL
Sbjct: 461 DSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHTP 520
Query: 262 GLTANLISISQLCDQGLKVVFKQSGCVVKNKNKDVLMRGARSKDNCYMWTSETTFLSARC 321
+ +L+S+++L + F ++ V++ + VL + D + W S+ L +
Sbjct: 521 NIAYDLLSLNELAAVDITACFTKN--VLERSDGTVLAPIVQYGD--FYWVSKRYLLPSNI 576
Query: 322 LMSKEDEVR-----------IWHQKLGHLNLKSMKRIVAEEAVRGIPKLKIQEGKV---- 366
+ + V H+ L H N ++++ + + + +
Sbjct: 577 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQ 636
Query: 367 CGECQIGKQVKMSHQK---LQHLTTSKVLELLHMDLMGPMQVESLGGKRYVFVCVDDFSR 423
C +C IGK K H K L++ + + + LH D+ GP+ Y D+ ++
Sbjct: 637 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 696
Query: 424 FTWVEFLKEKSDT--FEVFKELCLQVQREKGSGIVKIRSDHGKEFENGQFSEFCSSEGIK 481
F WV L ++ + +VF + ++ + + ++ I+ D G E+ N +F GI
Sbjct: 697 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 756
Query: 482 HEFSAPITPQQNGVVERKNRTLQESARAMLHAKNLPYHFWAEAINTACYIHNRV-TIRQG 540
++ + +GV ER NRTL + R L LP H W AI + + N + + +
Sbjct: 757 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 816
Query: 541 DTVTQYELWKGKKPTVKYFHVFGSKCYILSDREHRRKLDPKSEVGIFLGYSGNSRAYRVY 600
+ Q+ G + FG I++D K+ P+ G L S NS Y +Y
Sbjct: 817 KSARQHAGLAGL--DISTLLPFGQP-VIVNDHNPNSKIHPRGIPGYALHPSRNSYGYIIY 873
Query: 601 NIRTKVMMESINVVVDDTSNERTGQ 625
K +++ N V+ R Q
Sbjct: 874 LPSLKKTVDTTNYVILQGKESRLDQ 898
>YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B)
Length = 1770
Score = 122 bits (306), Expect = 6e-27
Identities = 140/642 (21%), Positives = 255/642 (38%), Gaps = 62/642 (9%)
Query: 29 KQVVELQAEKKKLTEEVALLNSKMEGMTKSIRMMSKSTDILDEILDVGKSAGDKT----- 83
K V ++Q ++L + +AL N + +G T + + I+ + + + D+
Sbjct: 250 KSVSKMQTNNQELKDWIALANLEYDGSTSADTFEITVSTIIQRLKENNINVSDRLACQLI 309
Query: 84 --GIGFDYRAVNKASQNMTK-------EHVQIGRQSNVKMWNRRPQQSVTHS-YAQVR-- 131
G+ D++ + + T +Q+ N M +P Q HS Y V
Sbjct: 310 LKGLSGDFKYLRNQYRTKTNMKLSQLFAEIQLIYDENKIMNLNKPSQYKQHSEYKNVSRT 369
Query: 132 --NYQNSTWRCHYCGRFGHIRPYCFKLYGYPILQDVSR---EYEKKSPGKSRWKPKVNAT 186
N N+ R +P K + SR ++ +S S++ N
Sbjct: 370 SPNTTNTKVTTRNYQRTNSSKPRAAKAHNIATSSKFSRVNNDHINESTVSSQYLSDDNEL 429
Query: 187 AL--------IAHTSLRASSKEDWYF-DSGCSRHMTGVKSYLEKMKPHAKSFVTFGDGAK 237
+L HT D DSG S+ + YL P+++ +
Sbjct: 430 SLGQQQKESKPTHTIDSNDELPDHLLIDSGASQTLVRSAHYLHHATPNSEINIVDAQKQD 489
Query: 238 GKIRGIGKLS---DTGSPNLDDVLLVEGLTANLISISQLCDQGLKVVFKQSGCVVKNKNK 294
I IG L G+ L + +L+S+S+L +Q + F ++ ++ +
Sbjct: 490 IPINAIGNLHFNFQNGTKTSIKALHTPNIAYDLLSLSELANQNITACFTRN--TLERSDG 547
Query: 295 DVLMRGARSKDNCYMWTSETTFLSARCL------MSKEDEVRIW-----HQKLGHLNLKS 343
VL + D + W S+ + + ++K V + H+ LGH N +S
Sbjct: 548 TVLAPIVKHGD--FYWLSKKYLIPSHISKLTINNVNKSKSVNKYPYPLIHRMLGHANFRS 605
Query: 344 MKRIVAEEAVRGIPKLKIQEGKV----CGECQIGKQVKMSHQK---LQHLTTSKVLELLH 396
+++ + + AV + + I+ C +C IGK K H K L++ + + + LH
Sbjct: 606 IQKSLKKNAVTYLKESDIEWSNASTYQCPDCLIGKSTKHRHVKGSRLKYQESYEPFQYLH 665
Query: 397 MDLMGPMQVESLGGKRYVFVCVDDFSRFTWVEFLKEKSDT--FEVFKELCLQVQREKGSG 454
D+ GP+ Y D+ +RF WV L ++ + VF + ++ + +
Sbjct: 666 TDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNAR 725
Query: 455 IVKIRSDHGKEFENGQFSEFCSSEGIKHEFSAPITPQQNGVVERKNRTLQESARAMLHAK 514
++ I+ D G E+ N +F ++ GI ++ + +GV ER NRTL R +LH
Sbjct: 726 VLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCS 785
Query: 515 NLPYHFWAEAINTACYIHNRVTIRQGD-TVTQYELWKGKKPTVKYFHVFGSKCYILSDRE 573
LP H W A+ + I N + + D + Q+ G T FG I+++
Sbjct: 786 GLPNHLWFSAVEFSTIIRNSLVSPKNDKSARQHAGLAGLDITT--ILPFGQP-VIVNNHN 842
Query: 574 HRRKLDPKSEVGIFLGYSGNSRAYRVYNIRTKVMMESINVVV 615
K+ P+ G L S NS Y +Y K +++ N V+
Sbjct: 843 PDSKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVI 884
Score = 116 bits (291), Expect = 3e-25
Identities = 125/521 (23%), Positives = 225/521 (42%), Gaps = 57/521 (10%)
Query: 718 WIQSMQEELGQFKRNEVWELVPRPD-----DANVVGTKWIFRNKSDESGNVTRNKSRLVA 772
++++ +E+ Q + W+ D V+ + +IF K D + +K+R VA
Sbjct: 1265 YVEAYHKEISQLLKMNTWDTNKYYDRNDIDPKKVINSMFIFNKKRDGT-----HKARFVA 1319
Query: 773 QGYSQIEGIDFYETFAPVARLESIRLLLGVACLLKFRLY--QMDVKSAFLNGYLNEEVYV 830
+G I+ D Y++ + L+ ++ L Y Q+D+ SA+L + EE+Y+
Sbjct: 1320 RG--DIQHPDTYDSDMQSNTVHHYALMTSLSIALDNDYYITQLDISSAYLYADIKEELYI 1377
Query: 831 EQPKGFVDPSFPDHVYRLKKALYGLKQAPRAWYERLTEFLINNGYDKGGIDKTLFVKKNG 890
P D + RL+K+LYGLKQ+ WYE + +LI N D + V KN
Sbjct: 1378 RPPPHL---GLNDKLLRLRKSLYGLKQSGANWYETIKSYLI-NCCDMQEVRGWSCVFKN- 1432
Query: 891 GELMVAQIYVDDIVFGGMSNQMVEQFVEQMKSEFEMSLV------GELTY-FLGLQVKQM 943
+ ++VDD++ ++ + +K +++ ++ E+ Y LGL++K
Sbjct: 1433 -SQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQ 1491
Query: 944 EDTLFITQSKYAK-GIVKKF---------GLENAGHK-RTPAATHIKLTKDEKGTDVDP- 991
+SKY K G+ K L G K R P + +DE D D
Sbjct: 1492 -------RSKYMKLGMEKSLTEKLPKLNVPLNPKGKKLRAPGQPGHYIDQDELEIDEDEY 1544
Query: 992 ----SLYRSMIGSLLYLTAS-RPDITFAVGVCARYQAEPKTSHLIQVKRIIKYISGTSDY 1046
+ +IG Y+ R D+ + + A++ P L +I+++ T D
Sbjct: 1545 KEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDK 1604
Query: 1047 GILYSHN----TNSGLTGYCDADWAGSADDRKSTSGGCFFLENNLISWFSKKQNCVSLST 1102
+++ N ++ L DA + G+ KS G F L +I S K + ST
Sbjct: 1605 QLIWHKNKPTKPDNKLVAISDASY-GNQPYYKSQIGNIFLLNGKVIGGKSTKASLTCTST 1663
Query: 1103 AEAEYIAAGSSCTQLMWMKQMLKEYNVQQDVMTLFCDNLSAINISKNPIQHS-RTKHIDI 1161
EAE A + L + +++E N + + L D+ S I+I K+ + R +
Sbjct: 1664 TEAEIHAVSEAIPLLNNLSHLVQELNKKPIIKGLLTDSRSTISIIKSTNEEKFRNRFFGT 1723
Query: 1162 RHHFIRELVEDGTVTLEHVSTEKQLADIFTKALDATQFEKL 1202
+ +R+ V + + ++ T+K +AD+ TK L F+ L
Sbjct: 1724 KAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTFKLL 1764
>YME4_YEAST (Q04711) Transposon Ty1 protein B
Length = 1328
Score = 120 bits (300), Expect = 3e-26
Identities = 124/531 (23%), Positives = 230/531 (42%), Gaps = 58/531 (10%)
Query: 707 KNVKEALTDEFWIQSMQEELGQFKRNEVWELVP-----RPDDANVVGTKWIFRNKSDESG 761
K++KE E +I++ +E+ Q + W+ D V+ + +IF K D +
Sbjct: 815 KDIKEK---EKYIEAYHKEVNQLLKMNTWDTDKYYDRKEIDPKRVINSMFIFNRKRDGT- 870
Query: 762 NVTRNKSRLVAQGYSQIEGIDFYETFAPVARLESIRLLLGVACLLKFRLY--QMDVKSAF 819
+K+R VA+G I+ D Y++ + L+ ++ L Y Q+D+ SA+
Sbjct: 871 ----HKARFVARG--DIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAY 924
Query: 820 LNGYLNEEVYVEQPKGFVDPSFPDHVYRLKKALYGLKQAPRAWYERLTEFLINN-GYDKG 878
L + EE+Y+ P D + RLKK+LYGLKQ+ WYE + +LI G ++
Sbjct: 925 LYADIKEELYIRPPPHL---GMNDKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEE- 980
Query: 879 GIDKTLFVKKNGGELMVAQIYVDDIVFGGMSNQMVEQFVEQMKSEFEMSLVGELTYFLGL 938
+ V KN + ++VDD++ ++ + +K +++ ++ LG
Sbjct: 981 -VRGWSCVFKN--SQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIIN-----LGE 1032
Query: 939 QVKQMEDTLFITQSKYAKGIVKKFGLENAGHKRTP--------------AATHIKLTKDE 984
+++ + + KY +G K G+EN+ ++ P A L D+
Sbjct: 1033 SDNEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQ 1092
Query: 985 KGTDVDPSLYR-------SMIGSLLYLTAS-RPDITFAVGVCARYQAEPKTSHLIQVKRI 1036
++D Y+ +IG Y+ R D+ + + A++ P L +
Sbjct: 1093 DELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYEL 1152
Query: 1037 IKYISGTSDYGILYSHN----TNSGLTGYCDADWAGSADDRKSTSGGCFFLENNLISWFS 1092
I+++ T D +++ N ++ L DA + G+ KS G + L +I S
Sbjct: 1153 IQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNIYLLNGKVIGGKS 1211
Query: 1093 KKQNCVSLSTAEAEYIAAGSSCTQLMWMKQMLKEYNVQQDVMTLFCDNLSAIN-ISKNPI 1151
K + ST EAE A S L + +++E N + L D+ S I+ I N
Sbjct: 1212 TKASLTCTSTTEAEIHAISESVPLLNNLSHLVQELNKKPITKGLLTDSKSTISIIISNNE 1271
Query: 1152 QHSRTKHIDIRHHFIRELVEDGTVTLEHVSTEKQLADIFTKALDATQFEKL 1202
+ R + + +R+ V + + ++ T+K +AD+ TK L F+ L
Sbjct: 1272 EKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLL 1322
Score = 98.6 bits (244), Expect = 9e-20
Identities = 112/526 (21%), Positives = 196/526 (36%), Gaps = 65/526 (12%)
Query: 205 DSGCSRHMTGVKSYLEKMKPHAKSFVTFGDGAKGKIRGIGKLSDTGSPNLDD---VLLVE 261
DSG SR + ++ + V I IG L N VL
Sbjct: 34 DSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHTP 93
Query: 262 GLTANLISISQLCDQGLKVVFKQSGCVVKNKNKDVLMRGARSKDNCYMWTSETTFLSARC 321
+ +L+S+++L + F ++ V++ + VL + D + W S+ L +
Sbjct: 94 NIAYDLLSLNELAAVDITACFTKN--VLERSDGTVLAPIVKYGD--FYWVSKKYLLPSNI 149
Query: 322 LMSKEDEVR-----------IWHQKLGHLNLKSMKRIVAEEAVRGIPKLKIQEGKV---- 366
+ + V H+ L H N ++++ + + + +
Sbjct: 150 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQ 209
Query: 367 CGECQIGKQVKMSHQK---LQHLTTSKVLELLHMDLMGPMQVESLGGKRYVFVCVDDFSR 423
C +C IGK K H K L++ + + + LH D+ GP+ Y D+ ++
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 269
Query: 424 FTWVEFLKEKSDT--FEVFKELCLQVQREKGSGIVKIRSDHGKEFENGQFSEFCSSEGIK 481
F WV L ++ + +VF + ++ + + ++ I+ D G E+ N +F GI
Sbjct: 270 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 329
Query: 482 HEFSAPITPQQNGVVERKNRTLQESARAMLHAKNLPYHFWAEAINTACYIHNRV-TIRQG 540
++ + +GV ER NRTL + R L LP H W AI + + N + + +
Sbjct: 330 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 389
Query: 541 DTVTQYELWKGKKPTVKYFHVFGSKCYILSDREHRRKLDPKSEVGIFLGYSGNSRAYRVY 600
+ Q+ G + FG I++D K+ P+ G L S NS Y +Y
Sbjct: 390 KSARQHAGLAGL--DISTLLPFGQP-VIVNDHNPNSKIHPRGIPGYALHPSRNSYGYIIY 446
Query: 601 NIRTKVMMESINVVV------------------DDTSNERT---------GQAHDEDDLP 633
K +++ N V+ D+ N T + DDL
Sbjct: 447 LPSLKKTVDTTNYVILQGKESRLDQFNYDALTFDEDLNRLTASYQSFIASNEIQQSDDLN 506
Query: 634 YECTN-------VEPDEPAIQFPNEQENTVSQPPLATKEPSIRVQK 672
E + + P++P T S PP E S RV K
Sbjct: 507 IESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSK 552
>YJZ9_YEAST (P47100) Transposon Ty1 protein B
Length = 1755
Score = 119 bits (298), Expect = 5e-26
Identities = 127/534 (23%), Positives = 236/534 (43%), Gaps = 64/534 (11%)
Query: 707 KNVKEALTDEFWIQSMQEELGQFKRNEVW---ELVPRP--DDANVVGTKWIFRNKSDESG 761
K++KE E +I++ +E+ Q + + W E R D V+ + +IF K D +
Sbjct: 1242 KDIKEK---EKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFIFNKKRDGT- 1297
Query: 762 NVTRNKSRLVAQGYSQIEGIDFYETFAPVARLESIRLLLGVACLLKFRLY--QMDVKSAF 819
+K+R VA+G I+ D Y++ + L+ ++ L Y Q+D+ SA+
Sbjct: 1298 ----HKARFVARG--DIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAY 1351
Query: 820 LNGYLNEEVYVEQPKGFVDPSFPDHVYRLKKALYGLKQAPRAWYERLTEFLINN-GYDKG 878
L + EE+Y+ P D + RLKK+LYGLKQ+ WYE + +LI G ++
Sbjct: 1352 LYADIKEELYIRPPPHL---GMNDKLIRLKKSLYGLKQSGANWYETIKSYLIQQCGMEE- 1407
Query: 879 GIDKTLFVKKNGGELMVAQIYVDDIVFGGMSNQMVEQFVEQMKSEFEMSLVGELTYFLGL 938
+ V KN + ++VDD+V + ++ +E++K +++ ++ LG
Sbjct: 1408 -VRGWSCVFKN--SQVTICLFVDDMVLFSKNLNSNKRIIEKLKMQYDTKIIN-----LGE 1459
Query: 939 QVKQMEDTLFITQSKYAKGIVKKFGLENAGHKRTPAATHIKLTKDEKGTDV----DPSLY 994
++++ + + KY +G K G+EN+ ++ P + + + KG + P LY
Sbjct: 1460 SDEEIQYDILGLEIKYQRGKYMKLGMENSLTEKIP---KLNVPLNPKGRKLSAPGQPGLY 1516
Query: 995 --------------------RSMIGSLLYLTAS-RPDITFAVGVCARYQAEPKTSHLIQV 1033
+ +IG Y+ R D+ + + A++ P L
Sbjct: 1517 IDQQELELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMT 1576
Query: 1034 KRIIKYISGTSDYGILYSHN----TNSGLTGYCDADWAGSADDRKSTSGGCFFLENNLIS 1089
+I++I T D +++ + + L DA + G+ KS G + L +I
Sbjct: 1577 YELIQFIWNTRDKQLIWHKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNIYLLNGKVIG 1635
Query: 1090 WFSKKQNCVSLSTAEAEYIAAGSSCTQLMWMKQMLKEYNVQQDVMTLFCDNLSAIN-ISK 1148
S K + ST EAE A S L + +++E + + L D+ S I+ I
Sbjct: 1636 GKSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQELDKKPITKGLLTDSKSTISIIIS 1695
Query: 1149 NPIQHSRTKHIDIRHHFIRELVEDGTVTLEHVSTEKQLADIFTKALDATQFEKL 1202
N + R + + +R+ V + + ++ T+K +AD+ TK L F+ L
Sbjct: 1696 NNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLL 1749
Score = 98.6 bits (244), Expect = 9e-20
Identities = 112/526 (21%), Positives = 196/526 (36%), Gaps = 65/526 (12%)
Query: 205 DSGCSRHMTGVKSYLEKMKPHAKSFVTFGDGAKGKIRGIGKLSDTGSPNLDD---VLLVE 261
DSG SR + ++ + V I IG L N VL
Sbjct: 461 DSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHTP 520
Query: 262 GLTANLISISQLCDQGLKVVFKQSGCVVKNKNKDVLMRGARSKDNCYMWTSETTFLSARC 321
+ +L+S+++L + F ++ V++ + VL + D + W S+ L +
Sbjct: 521 NIAYDLLSLNELAAVDITACFTKN--VLERSDGTVLAPIVKYGD--FYWVSKKYLLPSNI 576
Query: 322 LMSKEDEVR-----------IWHQKLGHLNLKSMKRIVAEEAVRGIPKLKIQEGKV---- 366
+ + V H+ L H N ++++ + + + +
Sbjct: 577 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQ 636
Query: 367 CGECQIGKQVKMSHQK---LQHLTTSKVLELLHMDLMGPMQVESLGGKRYVFVCVDDFSR 423
C +C IGK K H K L++ + + + LH D+ GP+ Y D+ ++
Sbjct: 637 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 696
Query: 424 FTWVEFLKEKSDT--FEVFKELCLQVQREKGSGIVKIRSDHGKEFENGQFSEFCSSEGIK 481
F WV L ++ + +VF + ++ + + ++ I+ D G E+ N +F GI
Sbjct: 697 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 756
Query: 482 HEFSAPITPQQNGVVERKNRTLQESARAMLHAKNLPYHFWAEAINTACYIHNRV-TIRQG 540
++ + +GV ER NRTL + R L LP H W AI + + N + + +
Sbjct: 757 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 816
Query: 541 DTVTQYELWKGKKPTVKYFHVFGSKCYILSDREHRRKLDPKSEVGIFLGYSGNSRAYRVY 600
+ Q+ G + FG I++D K+ P+ G L S NS Y +Y
Sbjct: 817 KSARQHAGLAGL--DISTLLPFGQP-VIVNDHNPNSKIHPRGIPGYALHPSRNSYGYIIY 873
Query: 601 NIRTKVMMESINVVV------------------DDTSNERT---------GQAHDEDDLP 633
K +++ N V+ D+ N T + DDL
Sbjct: 874 LPSLKKTVDTTNYVILQGKESRLDQFNYDALTFDEDLNRLTASYQSFIASNEIQQSDDLN 933
Query: 634 YECTN-------VEPDEPAIQFPNEQENTVSQPPLATKEPSIRVQK 672
E + + P++P T S PP E S RV K
Sbjct: 934 IESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSK 979
>YMU0_YEAST (Q04670) Transposon Ty1 protein B
Length = 1328
Score = 117 bits (293), Expect = 2e-25
Identities = 125/534 (23%), Positives = 230/534 (42%), Gaps = 64/534 (11%)
Query: 707 KNVKEALTDEFWIQSMQEELGQFKRNEVWELV-----PRPDDANVVGTKWIFRNKSDESG 761
K++KE E +IQ+ +E+ Q + + W+ D V+ + +IF K D +
Sbjct: 815 KDIKEK---EKYIQAYHKEVNQLLKMKTWDTDRYYDRKEIDPKRVINSMFIFNRKRDGT- 870
Query: 762 NVTRNKSRLVAQGYSQIEGIDFYETFAPVARLESIRLLLGVACLLKFRLY--QMDVKSAF 819
+K+R VA+G I+ D Y+ + L+ ++ L Y Q+D+ SA+
Sbjct: 871 ----HKARFVARG--DIQHPDTYDPGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAY 924
Query: 820 LNGYLNEEVYVEQPKGFVDPSFPDHVYRLKKALYGLKQAPRAWYERLTEFLINN-GYDKG 878
L + EE+Y+ P D + RLKK+LYGLKQ+ WYE + +LI G ++
Sbjct: 925 LYADIKEELYIRPPPHL---GMNDKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEE- 980
Query: 879 GIDKTLFVKKNGGELMVAQIYVDDIVFGGMSNQMVEQFVEQMKSEFEMSLVGELTYFLGL 938
+ V KN + ++VDD++ ++ + +K +++ ++ LG
Sbjct: 981 -VRGWSCVFKN--SQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIIN-----LGE 1032
Query: 939 QVKQMEDTLFITQSKYAKGIVKKFGLENAGHKRTPAATHIKLTKDEKGTDV----DPSLY 994
+++ + + KY +G K G+EN+ ++ P + + + KG + P LY
Sbjct: 1033 SDNEIQYDILGLEIKYQRGKYMKLGMENSLTEKIP---KLNVPLNPKGRKLSAPGQPGLY 1089
Query: 995 --------------------RSMIGSLLYLTAS-RPDITFAVGVCARYQAEPKTSHLIQV 1033
+ +IG Y+ R D+ + + A++ P L
Sbjct: 1090 IDQQELELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMT 1149
Query: 1034 KRIIKYISGTSDYGILYSHN----TNSGLTGYCDADWAGSADDRKSTSGGCFFLENNLIS 1089
+I++I T D +++ + + L DA + G+ KS G + L +I
Sbjct: 1150 YELIQFIWNTRDKQLIWHKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNIYLLNGKVIG 1208
Query: 1090 WFSKKQNCVSLSTAEAEYIAAGSSCTQLMWMKQMLKEYNVQQDVMTLFCDNLSAIN-ISK 1148
S K + ST EAE A S L + +++E N + L D+ S I+ I
Sbjct: 1209 GKSTKASLTCTSTTEAEIHAISESVPLLNNLSHLVQELNKKPITKGLLTDSKSTISIIIS 1268
Query: 1149 NPIQHSRTKHIDIRHHFIRELVEDGTVTLEHVSTEKQLADIFTKALDATQFEKL 1202
N + R + + +R+ V + + ++ T+K +AD+ TK L F+ L
Sbjct: 1269 NNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLL 1322
Score = 98.6 bits (244), Expect = 9e-20
Identities = 112/526 (21%), Positives = 196/526 (36%), Gaps = 65/526 (12%)
Query: 205 DSGCSRHMTGVKSYLEKMKPHAKSFVTFGDGAKGKIRGIGKLSDTGSPNLDD---VLLVE 261
DSG SR + ++ + V I IG L N VL
Sbjct: 34 DSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHTP 93
Query: 262 GLTANLISISQLCDQGLKVVFKQSGCVVKNKNKDVLMRGARSKDNCYMWTSETTFLSARC 321
+ +L+S+++L + F ++ V++ + VL + D + W S+ L +
Sbjct: 94 NIAYDLLSLNELAAVDITACFTKN--VLERSDGTVLAPIVKYGD--FYWVSKKYLLPSNI 149
Query: 322 LMSKEDEVR-----------IWHQKLGHLNLKSMKRIVAEEAVRGIPKLKIQEGKV---- 366
+ + V H+ L H N ++++ + + + +
Sbjct: 150 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQ 209
Query: 367 CGECQIGKQVKMSHQK---LQHLTTSKVLELLHMDLMGPMQVESLGGKRYVFVCVDDFSR 423
C +C IGK K H K L++ + + + LH D+ GP+ Y D+ ++
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 269
Query: 424 FTWVEFLKEKSDT--FEVFKELCLQVQREKGSGIVKIRSDHGKEFENGQFSEFCSSEGIK 481
F WV L ++ + +VF + ++ + + ++ I+ D G E+ N +F GI
Sbjct: 270 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 329
Query: 482 HEFSAPITPQQNGVVERKNRTLQESARAMLHAKNLPYHFWAEAINTACYIHNRV-TIRQG 540
++ + +GV ER NRTL + R L LP H W AI + + N + + +
Sbjct: 330 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 389
Query: 541 DTVTQYELWKGKKPTVKYFHVFGSKCYILSDREHRRKLDPKSEVGIFLGYSGNSRAYRVY 600
+ Q+ G + FG I++D K+ P+ G L S NS Y +Y
Sbjct: 390 KSARQHAGLAGL--DISTLLPFGQP-VIVNDHNPNSKIHPRGIPGYALHPSRNSYGYIIY 446
Query: 601 NIRTKVMMESINVVV------------------DDTSNERT---------GQAHDEDDLP 633
K +++ N V+ D+ N T + DDL
Sbjct: 447 LPSLKKTVDTTNYVILQGKESRLDQFNYDALTFDEDLNRLTASYQSFIASNEIQQSDDLN 506
Query: 634 YECTN-------VEPDEPAIQFPNEQENTVSQPPLATKEPSIRVQK 672
E + + P++P T S PP E S RV K
Sbjct: 507 IESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSK 552
>YMT5_YEAST (Q04214) Transposon Ty1 protein B
Length = 1328
Score = 117 bits (293), Expect = 2e-25
Identities = 122/534 (22%), Positives = 233/534 (42%), Gaps = 64/534 (11%)
Query: 707 KNVKEALTDEFWIQSMQEELGQFKRNEVWELVP-----RPDDANVVGTKWIFRNKSDESG 761
K++KE E +I++ +E+ Q + + W+ D V+ + +IF K D +
Sbjct: 815 KDIKEK---EKYIEAYHKEVNQLLKMKTWDTDKYYDRKEIDPKRVINSMFIFNRKRDGT- 870
Query: 762 NVTRNKSRLVAQGYSQIEGIDFYETFAPVARLESIRLLLGVACLLKFRLY--QMDVKSAF 819
+K+R VA+G I+ D Y++ + L+ ++ L Y Q+D+ SA+
Sbjct: 871 ----HKARFVARG--DIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAY 924
Query: 820 LNGYLNEEVYVEQPKGFVDPSFPDHVYRLKKALYGLKQAPRAWYERLTEFLINN-GYDKG 878
L + EE+Y+ P D + RLKK+LYGLKQ+ WYE + +LI G ++
Sbjct: 925 LYADIKEELYIRPPPHL---GMNDKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEV 981
Query: 879 GIDKTLFVKKNGGELMVAQIYVDDIVFGGMSNQMVEQFVEQMKSEFEMSLVGELTYFLGL 938
+F + ++VDD+V + ++ ++++K +++ ++ LG
Sbjct: 982 RGWSCVFENSQ----VTICLFVDDMVLFSKNLNSNKRIIDKLKMQYDTKIIN-----LGE 1032
Query: 939 QVKQMEDTLFITQSKYAKGIVKKFGLENAGHKRTPAATHIKLTKDEKGTDV----DPSLY 994
++++ + + KY +G K G+EN+ ++ P + + + KG + P LY
Sbjct: 1033 SDEEIQYDILGLEIKYQRGKYMKLGMENSLTEKIP---KLNVPLNPKGRKLSAPGQPGLY 1089
Query: 995 --------------------RSMIGSLLYLTAS-RPDITFAVGVCARYQAEPKTSHLIQV 1033
+ +IG Y+ R D+ + + A++ P L
Sbjct: 1090 IDQQELELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMT 1149
Query: 1034 KRIIKYISGTSDYGILYSHN----TNSGLTGYCDADWAGSADDRKSTSGGCFFLENNLIS 1089
+I++I T D +++ + + L DA + G+ KS G + L +I
Sbjct: 1150 YELIQFIWNTRDKQLIWHKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNIYLLNGKVIG 1208
Query: 1090 WFSKKQNCVSLSTAEAEYIAAGSSCTQLMWMKQMLKEYNVQQDVMTLFCDNLSAIN-ISK 1148
S K + ST EAE A S L + +++E + + L D+ S I+ I
Sbjct: 1209 GKSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQELDKKPITKGLLTDSKSTISIIIS 1268
Query: 1149 NPIQHSRTKHIDIRHHFIRELVEDGTVTLEHVSTEKQLADIFTKALDATQFEKL 1202
N + R + + +R+ V + + ++ T+K +AD+ TK L F+ L
Sbjct: 1269 NNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLL 1322
Score = 97.4 bits (241), Expect = 2e-19
Identities = 96/445 (21%), Positives = 174/445 (38%), Gaps = 31/445 (6%)
Query: 205 DSGCSRHMTGVKSYLEKMKPHAKSFVTFGDGAKGKIRGIGKLSDTGSPNLDD---VLLVE 261
DSG SR + ++ + V I IG L N VL
Sbjct: 34 DSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHTP 93
Query: 262 GLTANLISISQLCDQGLKVVFKQSGCVVKNKNKDVLMRGARSKDNCYMWTSETTFLSARC 321
+ +L+S+++L + F ++ V++ + VL + D + W S+ L +
Sbjct: 94 NIAYDLLSLNELAAVDITACFTKN--VLERSDGTVLAPIVKYGD--FYWVSKKYLLPSNI 149
Query: 322 LMSKEDEVR-----------IWHQKLGHLNLKSMKRIVAEEAVRGIPKLKIQEGKV---- 366
+ + V H+ L H N ++++ + + + +
Sbjct: 150 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQ 209
Query: 367 CGECQIGKQVKMSHQK---LQHLTTSKVLELLHMDLMGPMQVESLGGKRYVFVCVDDFSR 423
C +C IGK K H K L++ + + + LH D+ GP+ Y D+ ++
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 269
Query: 424 FTWVEFLKEKSDT--FEVFKELCLQVQREKGSGIVKIRSDHGKEFENGQFSEFCSSEGIK 481
F WV L ++ + +VF + ++ + + ++ I+ D G E+ N +F GI
Sbjct: 270 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 329
Query: 482 HEFSAPITPQQNGVVERKNRTLQESARAMLHAKNLPYHFWAEAINTACYIHNRV-TIRQG 540
++ + +GV ER NRTL + R L LP H W AI + + N + + +
Sbjct: 330 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 389
Query: 541 DTVTQYELWKGKKPTVKYFHVFGSKCYILSDREHRRKLDPKSEVGIFLGYSGNSRAYRVY 600
+ Q+ G + FG I++D K+ P+ G L S NS Y +Y
Sbjct: 390 KSARQHAGLAGL--DISTLLPFGQP-VIVNDHNPNSKIHPRGIPGYALHPSRNSYGYIIY 446
Query: 601 NIRTKVMMESINVVVDDTSNERTGQ 625
K +++ N V+ R Q
Sbjct: 447 LPSLKKTVDTTNYVILQGKESRLDQ 471
>M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820
(ORF170)
Length = 170
Score = 103 bits (257), Expect = 3e-21
Identities = 51/101 (50%), Positives = 67/101 (65%)
Query: 703 KVEPKNVKEALTDEFWIQSMQEELGQFKRNEVWELVPRPDDANVVGTKWIFRNKSDESGN 762
K EPK+V AL D W Q+MQEEL RN+ W LVP P + N++G KW+F+ K G
Sbjct: 25 KKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGT 84
Query: 763 VTRNKSRLVAQGYSQIEGIDFYETFAPVARLESIRLLLGVA 803
+ R K+RLVA+G+ Q EGI F ET++PV R +IR +L VA
Sbjct: 85 LDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125
>M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240
(ORF111a)
Length = 111
Score = 67.8 bits (164), Expect = 2e-10
Identities = 28/79 (35%), Positives = 49/79 (61%)
Query: 1002 LYLTASRPDITFAVGVCARYQAEPKTSHLIQVKRIIKYISGTSDYGILYSHNTNSGLTGY 1061
+YLT +RPD+TFAV +++ + +T+ + V +++ Y+ GT G+ YS ++ L +
Sbjct: 1 MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60
Query: 1062 CDADWAGSADDRKSTSGGC 1080
D+DWA D R+S +G C
Sbjct: 61 ADSDWASCPDTRRSVTGFC 79
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 57.8 bits (138), Expect = 2e-07
Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 10/199 (5%)
Query: 337 GHLNLKSMKRIVAEEAVRGIPKLKIQEG-KVCGECQIGKQVKMSHQKLQHLTTSKVLELL 395
GH +K M R+V + ++ ++ + C +C L + LE++
Sbjct: 1479 GHFGIKKMWRMVHRKFYWPQMRVCVENCVRTCAKCLCANDHSKLTSSLTPYRMTFPLEIV 1538
Query: 396 HMDLMGPMQVESLGGKRYVFVCVDDFSRF-TWVEFLKEKSDTFEVFKELCLQVQREKGSG 454
DLM S+ G RY+ +D F+++ T V +K++T V K + +G
Sbjct: 1539 ACDLMDVGL--SVQGNRYILTIIDLFTKYGTAVPIPDKKAET--VLKAFVERWAIGEGRI 1594
Query: 455 IVKIRSDHGKEFENGQFSEFCSSEGIKHEFSAPITPQQNGVVERKNRTLQESARAMLHAK 514
+K+ +D GKEF NG F++F I+H + + NG VER N+T+ ++ K
Sbjct: 1595 PLKLLTDQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANGAVERFNKTIMH----IMKKK 1650
Query: 515 NLPYHFWAEAINTACYIHN 533
W + + A Y +N
Sbjct: 1651 TAVPMEWDDQVVYAVYAYN 1669
>POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1161
Score = 54.7 bits (130), Expect = 2e-06
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 9/147 (6%)
Query: 367 CGECQIGKQVKMSHQK-LQHLTTSKVLELLHMDLMGPMQVESLGGKRYVFVCVDDFSRFT 425
C +C + ++ L+ + K + ++D +GP+ + G +V V VD + F
Sbjct: 858 CKQCLVTNATNLTSPPILRPVKPLKPFDKFYIDYIGPLPPSN--GYLHVLVVVDSMTGFV 915
Query: 426 WVEFLKEKSDTFEVFKELCLQVQREKGSGIVKI-RSDHGKEFENGQFSEFCSSEGIKHEF 484
W+ K S + V K L + I K+ SD G F + F+++ +GI+ EF
Sbjct: 916 WLYPTKAPSTSATV-KALNMLTS----IAIPKVLHSDQGAAFTSSTFADWAKEKGIQLEF 970
Query: 485 SAPITPQQNGVVERKNRTLQESARAML 511
S P PQ +G VERKN ++ +L
Sbjct: 971 STPYHPQSSGKVERKNSDIKRLLTKLL 997
>POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)]
Length = 886
Score = 54.3 bits (129), Expect = 2e-06
Identities = 49/160 (30%), Positives = 66/160 (40%), Gaps = 12/160 (7%)
Query: 357 PKLKIQEGKVCGECQ----IGKQVKMSHQKLQHLTTSKVLELLHMDLMGPMQVESLGGKR 412
P ++ K G CQ K S L+ K + +D +GP+ G
Sbjct: 637 PNMRKDVVKQLGRCQQCLITNASNKASGPILRPDRPQKPFDKFFIDYIGPLPPSQ--GYL 694
Query: 413 YVFVCVDDFSRFTWVEFLKEKSDTFEVFKELCLQVQREKGSGIVK-IRSDHGKEFENGQF 471
YV V VD + FTW+ K S + V K L + I K I SD G F + F
Sbjct: 695 YVLVVVDGMTGFTWLYPTKAPSTSATV-KSLNVLTS----IAIPKVIHSDQGAAFTSSTF 749
Query: 472 SEFCSSEGIKHEFSAPITPQQNGVVERKNRTLQESARAML 511
+E+ GI EFS P PQ VERKN ++ +L
Sbjct: 750 AEWAKERGIHLEFSTPYHPQSGSKVERKNSDIKRLLTKLL 789
>POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1157
Score = 52.4 bits (124), Expect = 7e-06
Identities = 38/123 (30%), Positives = 60/123 (47%), Gaps = 8/123 (6%)
Query: 390 KVLELLHMDLMGPMQVESLGGKRYVFVCVDDFSRFTWVEFLKEKSDTFEVFKELCLQVQR 449
K + +D +GP+ + G +V V VD + F W+ K S + V K L +
Sbjct: 884 KPFDKFFIDYIGPLPPSN--GYLHVLVVVDSMTGFVWLYPTKAPSTSATV-KALNMLTS- 939
Query: 450 EKGSGIVK-IRSDHGKEFENGQFSEFCSSEGIKHEFSAPITPQQNGVVERKNRTLQESAR 508
+ K I SD G F + F+++ ++GI+ EFS P PQ +G VERKN ++
Sbjct: 940 ---IAVPKVIHSDQGAAFTSATFADWAKNKGIQLEFSTPYHPQSSGKVERKNSDIKRLLT 996
Query: 509 AML 511
+L
Sbjct: 997 KLL 999
>POL3_MOUSE (P11367) Retrovirus-related Pol polyprotein
(Endonuclease) (Fragment)
Length = 390
Score = 52.4 bits (124), Expect = 7e-06
Identities = 59/229 (25%), Positives = 94/229 (40%), Gaps = 10/229 (4%)
Query: 335 KLGHLNLKSMKRIV--AEEAVRGIPKLKIQEGKVCGECQIGKQVKMSHQKLQHLTTSKVL 392
+L HL+ + M+ ++ E + K KI +V CQ QV S K++ T +
Sbjct: 58 QLTHLSYQKMRALLDRKESPYYMLNKDKILH-EVAESCQACVQVNASKTKIRAGTRVRGH 116
Query: 393 EL-LHMDLMGPMQVESLGGKRYVFVCVDDFSRFTWVEFLKEKSDTFEVFKELCLQVQREK 451
L H ++ L G +Y+ V VD FS WVE K +T ++ + L+ +
Sbjct: 117 RLGTHWEIDFTEVKPGLYGYKYLLVFVDTFSG--WVEAFPTKHETAKIVTKKLLEEIFPR 174
Query: 452 GSGIVKIRSDHGKEFENGQFSEFCSSEGIKHEFSAPITPQQNGVVERKNRTLQESARAML 511
+ +D+G F + GI + PQ +G VER NRT++E+ +
Sbjct: 175 FGMPQVLGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLT 234
Query: 512 HAKNLPYHFWAEAINTACYIHNRVTIRQGDTVTQYELWKGKKPTVKYFH 560
A W + A Y G +T YE+ G P + FH
Sbjct: 235 LATGT--RDWVLLLPLALYRARNTPGPHG--LTPYEILYGAPPPLVNFH 279
>POL_AVIRE (P03360) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 473
Score = 51.6 bits (122), Expect = 1e-05
Identities = 36/112 (32%), Positives = 55/112 (48%), Gaps = 4/112 (3%)
Query: 396 HMDLMGPMQVESLGGKRYVFVCVDDFSRFTWVEFLKEKSDTFEV-FKELCLQVQREKGSG 454
H ++ + + GG +Y+ V VD FS WVE K +T +V K L L + G
Sbjct: 191 HWEVDFTEMITAKGGYKYLLVLVDTFSG--WVEAYPAKRETSQVVIKHLILDIIPRFGLP 248
Query: 455 IVKIRSDHGKEFENGQFSEFCSSEGIKHEFSAPITPQQNGVVERKNRTLQES 506
V+I SD+G F + C + + + PQ +G VER NRTL+++
Sbjct: 249 -VQIGSDNGPAFVAKVTQQLCEALNVSWKLHCAYRPQSSGQVERMNRTLKKA 299
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.318 0.134 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,079,818
Number of Sequences: 164201
Number of extensions: 6107662
Number of successful extensions: 15802
Number of sequences better than 10.0: 137
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 15560
Number of HSP's gapped (non-prelim): 205
length of query: 1213
length of database: 59,974,054
effective HSP length: 122
effective length of query: 1091
effective length of database: 39,941,532
effective search space: 43576211412
effective search space used: 43576211412
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 72 (32.3 bits)
Lotus: description of TM0172.5