BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0172.11
(148 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
R27C_ARATH (P49637) 60S ribosomal protein L27a-3 260 7e-70
R27B_ARATH (Q9LR33) 60S ribosomal protein L27a-2 254 5e-68
RL2A_DICDI (P48160) 60S ribosomal protein L27a 211 4e-55
RL2A_RAT (P18445) 60S ribosomal protein L27a 211 5e-55
RL2A_HUMAN (P46776) 60S ribosomal protein L27a 210 1e-54
RL2A_MOUSE (P14115) 60S ribosomal protein L27a (L29) 208 3e-54
RL2A_XENLA (P47830) 60S ribosomal protein L27a (L22) 206 2e-53
RL2A_OSCBR (O01358) 60S ribosomal protein L27a (Ribosomal protei... 201 5e-52
RL2A_DROME (P41092) 60S ribosomal protein L27a 197 7e-51
RL2A_TETTH (Q00454) 60S ribosomal protein L27a (L29) 195 3e-50
RL28_YEAST (P02406) 60S ribosomal protein L28 (L27A) (L29) (YL24... 195 3e-50
RL2A_EUPCR (P48161) 60S ribosomal protein L27a (L29) 191 4e-49
RL28_NEUCR (P08978) 60S ribosomal protein L28 (L27A) (L29) (CRP1) 189 1e-48
RL2A_ERYGR (P78987) 60S ribosomal protein L27a (L29) 185 3e-47
R28A_SCHPO (P36585) 60S ribosomal protein L28-A (L27A) (L29) 184 8e-47
R28B_SCHPO (P57728) 60S ribosomal protein L28-B 181 7e-46
RL2A_TENMO (Q27021) 60S ribosomal protein L27a 179 3e-45
RL2A_TRYBB (O15883) 60S ribosomal protein L27a (L29) 165 3e-41
RL2A_ENCCU (O62581) 60S ribosomal protein L27a 139 2e-33
RL2A_PIG (Q29333) 60S ribosomal protein L27a (Fragment) 100 1e-21
>R27C_ARATH (P49637) 60S ribosomal protein L27a-3
Length = 146
Score = 260 bits (665), Expect = 7e-70
Identities = 123/148 (83%), Positives = 134/148 (90%), Gaps = 2/148 (1%)
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 61 FHKLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKSKAPVIDVTNYGYFKVLGKGVLPANQ 120
FHKLRN+FFCP VN+DKLWSL+P++VK A + K P+IDVT +G+FKVLGKG LP N+
Sbjct: 61 FHKLRNKFFCPIVNLDKLWSLVPEDVK--AKSTKDNVPLIDVTQHGFFKVLGKGHLPENK 118
Query: 121 PVVVKAKLISKIAEKKIKENGGAVLLTA 148
P VVKAKLISK AEKKIKE GGAV+LTA
Sbjct: 119 PFVVKAKLISKTAEKKIKEAGGAVVLTA 146
>R27B_ARATH (Q9LR33) 60S ribosomal protein L27a-2
Length = 146
Score = 254 bits (649), Expect = 5e-68
Identities = 120/148 (81%), Positives = 131/148 (88%), Gaps = 2/148 (1%)
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
M T KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1 MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 61 FHKLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKSKAPVIDVTNYGYFKVLGKGVLPANQ 120
FHKLRN+FFCP VN+DKLWSL+P++VK A + K P+IDVT +G+FKVLGKG LP N+
Sbjct: 61 FHKLRNKFFCPIVNLDKLWSLVPEDVK--AKSSKDNVPLIDVTQHGFFKVLGKGHLPENK 118
Query: 121 PVVVKAKLISKIAEKKIKENGGAVLLTA 148
P VVKAKLISK AEKKIKE GGAV+LTA
Sbjct: 119 PFVVKAKLISKTAEKKIKEAGGAVVLTA 146
>RL2A_DICDI (P48160) 60S ribosomal protein L27a
Length = 148
Score = 211 bits (538), Expect = 4e-55
Identities = 98/149 (65%), Positives = 121/149 (80%), Gaps = 2/149 (1%)
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
M TRF K+RK RG V AG+GR+GKHRKHPGGRGNAGG+ HHRI FDKYHPGYFGK+GMR+
Sbjct: 1 MPTRFSKHRKSRGDVCAGYGRVGKHRKHPGGRGNAGGLTHHRINFDKYHPGYFGKLGMRH 60
Query: 61 FHKLRNQFFCPTVNIDKLWSLLPQEV-KDQAANDKSKAPVIDVTNYGYFKVLGKGVLPAN 119
FH LRNQ+ CPTV+++K+W+L+P+ V K AA + APV+DVT G+FKVLG G+LP
Sbjct: 61 FHLLRNQYHCPTVSLEKIWTLVPESVRKSLAAKNDGTAPVVDVTQKGFFKVLGHGILP-T 119
Query: 120 QPVVVKAKLISKIAEKKIKENGGAVLLTA 148
QP++VKA+ SK+AEKKIK GGA +L A
Sbjct: 120 QPIIVKARYFSKVAEKKIKAVGGACILVA 148
>RL2A_RAT (P18445) 60S ribosomal protein L27a
Length = 147
Score = 211 bits (537), Expect = 5e-55
Identities = 101/147 (68%), Positives = 119/147 (80%), Gaps = 2/147 (1%)
Query: 3 TRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFH 62
+R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR++H
Sbjct: 2 SRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYH 61
Query: 63 KLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKS-KAPVIDVTNYGYFKVLGKGVLPANQP 121
RNQ FCPTVN+DKLW+L+ ++ + AA +K+ AP+IDV GY+KVLGKG LP QP
Sbjct: 62 LKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKNGVAPIIDVVRSGYYKVLGKGKLP-KQP 120
Query: 122 VVVKAKLISKIAEKKIKENGGAVLLTA 148
V+VKAK S+ AE+KIK GGA +L A
Sbjct: 121 VIVKAKFFSRRAEEKIKGVGGACVLVA 147
>RL2A_HUMAN (P46776) 60S ribosomal protein L27a
Length = 147
Score = 210 bits (534), Expect = 1e-54
Identities = 99/147 (67%), Positives = 119/147 (80%), Gaps = 2/147 (1%)
Query: 3 TRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFH 62
+R +K RK RGHVS GHGRIGKHRKHPGGRGNAGG+HHHRI FDKYHPGYFGKVGM+++H
Sbjct: 2 SRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYH 61
Query: 63 KLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKS-KAPVIDVTNYGYFKVLGKGVLPANQP 121
RNQ FCPTVN+DKLW+L+ ++ + AA +K+ AP+IDV GY+KVLGKG LP QP
Sbjct: 62 LKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLP-KQP 120
Query: 122 VVVKAKLISKIAEKKIKENGGAVLLTA 148
V+VKAK S+ AE+KIK GGA +L A
Sbjct: 121 VIVKAKFFSRRAEEKIKSVGGACVLVA 147
>RL2A_MOUSE (P14115) 60S ribosomal protein L27a (L29)
Length = 147
Score = 208 bits (530), Expect = 3e-54
Identities = 100/147 (68%), Positives = 118/147 (80%), Gaps = 2/147 (1%)
Query: 3 TRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFH 62
+R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR++H
Sbjct: 2 SRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYH 61
Query: 63 KLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKS-KAPVIDVTNYGYFKVLGKGVLPANQP 121
RNQ FCPTVN+DK W+L+ ++ + AA +K+ AP+IDV GY+KVLGKG LP QP
Sbjct: 62 LKRNQSFCPTVNLDKPWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLP-KQP 120
Query: 122 VVVKAKLISKIAEKKIKENGGAVLLTA 148
V+VKAK S+ AE+KIK GGA +L A
Sbjct: 121 VIVKAKFFSRRAEEKIKGVGGACVLVA 147
>RL2A_XENLA (P47830) 60S ribosomal protein L27a (L22)
Length = 147
Score = 206 bits (523), Expect = 2e-53
Identities = 96/147 (65%), Positives = 118/147 (79%), Gaps = 2/147 (1%)
Query: 3 TRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFH 62
++ +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR++H
Sbjct: 2 SKLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYH 61
Query: 63 KLRNQFFCPTVNIDKLWSLLPQEVK-DQAANDKSKAPVIDVTNYGYFKVLGKGVLPANQP 121
+NQ FCPT+N+DKLW+L+ ++ + + A N + AP+ID + GY+KVLGKG LP QP
Sbjct: 62 LKKNQSFCPTINLDKLWTLVSEQTRLNHAKNLEGPAPIIDAVHAGYYKVLGKGKLP-KQP 120
Query: 122 VVVKAKLISKIAEKKIKENGGAVLLTA 148
V+VKAK S+ AE+KIK GGA +L A
Sbjct: 121 VIVKAKFFSRKAEEKIKSVGGACVLGA 147
>RL2A_OSCBR (O01358) 60S ribosomal protein L27a (Ribosomal protein
RPL-27)
Length = 145
Score = 201 bits (511), Expect = 5e-52
Identities = 97/148 (65%), Positives = 112/148 (75%), Gaps = 3/148 (2%)
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
M +K RK RGHVS GHGRIGKHRKHPGGRGNAGG HHHRI DKYHPGYFGKVGMR
Sbjct: 1 MAHSLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRV 60
Query: 61 FHKLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKSKAPVIDVTNYGYFKVLGKGVLPANQ 120
FH +N +CPTVN+D+LW+L+P+E K + + + KAPVID GYFKVLGKG+LP Q
Sbjct: 61 FHLNKNHHYCPTVNVDRLWALVPEEQKTKVSAE--KAPVIDCVKAGYFKVLGKGLLP-KQ 117
Query: 121 PVVVKAKLISKIAEKKIKENGGAVLLTA 148
P++VKAK S AE KIK GGA +L A
Sbjct: 118 PLIVKAKFFSHEAENKIKAAGGACILVA 145
>RL2A_DROME (P41092) 60S ribosomal protein L27a
Length = 149
Score = 197 bits (501), Expect = 7e-51
Identities = 98/144 (68%), Positives = 112/144 (77%), Gaps = 2/144 (1%)
Query: 6 KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLR 65
KK RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR FH R
Sbjct: 7 KKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLRR 66
Query: 66 NQFFCPTVNIDKLWSLLPQEVKDQAANDKS-KAPVIDVTNYGYFKVLGKGVLPANQPVVV 124
F P +N+DKLWSL+ E + +KS KAPVID+ +GY+K+LG+G LPA +PV+V
Sbjct: 67 QHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPA-RPVIV 125
Query: 125 KAKLISKIAEKKIKENGGAVLLTA 148
KAK SK AE KIK+ GG LL+A
Sbjct: 126 KAKYFSKKAEDKIKKAGGVCLLSA 149
>RL2A_TETTH (Q00454) 60S ribosomal protein L27a (L29)
Length = 149
Score = 195 bits (496), Expect = 3e-50
Identities = 97/150 (64%), Positives = 111/150 (73%), Gaps = 3/150 (2%)
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHP--GGRGNAGGMHHHRILFDKYHPGYFGKVGM 58
M + KK RK RGHVS GHGR+GKHRK GGRG AGGMHHHRIL +K+HPGY+GK+GM
Sbjct: 1 MVSHLKKTRKLRGHVSHGHGRVGKHRKGGCRGGRGKAGGMHHHRILMEKWHPGYYGKLGM 60
Query: 59 RYFHKLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKSKAPVIDVTNYGYFKVLGKGVLPA 118
R FH +N CP VNIDKLWSL+ + + A DK K PVIDVT G+FKVLGKG LP
Sbjct: 61 RTFHLKKNPLHCPVVNIDKLWSLVSDATRQKYAEDKKKVPVIDVTKAGFFKVLGKGRLP- 119
Query: 119 NQPVVVKAKLISKIAEKKIKENGGAVLLTA 148
NQPVVVKAK SK AE++I GGA +LTA
Sbjct: 120 NQPVVVKAKYFSKTAERRIVAVGGACVLTA 149
>RL28_YEAST (P02406) 60S ribosomal protein L28 (L27A) (L29) (YL24)
(RP62)
Length = 148
Score = 195 bits (496), Expect = 3e-50
Identities = 95/148 (64%), Positives = 113/148 (76%), Gaps = 3/148 (2%)
Query: 3 TRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFH 62
+RF K RK RGHVSAG GRIGKHRKHPGGRG AGG HHHRI DKYHPGYFGKVGMRYFH
Sbjct: 2 SRFTKTRKHRGHVSAGKGRIGKHRKHPGGRGMAGGEHHHRINMDKYHPGYFGKVGMRYFH 61
Query: 63 KLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKSK--APVIDVTNYGYFKVLGKGVLPANQ 120
K + F+ P +N+DKLW+L+P++ +DQ SK APVID GY K+LGKG +P N
Sbjct: 62 KQQAHFWKPVLNLDKLWTLIPEDKRDQYLKSASKETAPVIDTLAAGYGKILGKGRIP-NV 120
Query: 121 PVVVKAKLISKIAEKKIKENGGAVLLTA 148
PV+VKA+ +SK+AE+KI+ GG V L A
Sbjct: 121 PVIVKARFVSKLAEEKIRAAGGVVELIA 148
>RL2A_EUPCR (P48161) 60S ribosomal protein L27a (L29)
Length = 148
Score = 191 bits (486), Expect = 4e-49
Identities = 90/148 (60%), Positives = 113/148 (75%), Gaps = 1/148 (0%)
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
MT + RK RGHVS GHGR+GKHRKHPGGRG AG HHHRI KYHPG+ GK GMR+
Sbjct: 1 MTHSKRNTRKLRGHVSHGHGRVGKHRKHPGGRGMAGPEHHHRINVFKYHPGHIGKHGMRH 60
Query: 61 FHKLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKSKAPVIDVTNYGYFKVLGKGVLPANQ 120
FH +RNQ++CP++N+ KLWSL+ +E + +A DKSK +IDV +GY+KVLGKG+LP
Sbjct: 61 FHLMRNQYYCPSINLSKLWSLVTEEERQKAQTDKSKVILIDVVKHGYYKVLGKGLLP-EV 119
Query: 121 PVVVKAKLISKIAEKKIKENGGAVLLTA 148
P+VVKAKL + AEK+IK+ GGA +L A
Sbjct: 120 PLVVKAKLFTPTAEKRIKQVGGACVLRA 147
>RL28_NEUCR (P08978) 60S ribosomal protein L28 (L27A) (L29) (CRP1)
Length = 149
Score = 189 bits (481), Expect = 1e-48
Identities = 91/150 (60%), Positives = 113/150 (74%), Gaps = 3/150 (2%)
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
M TRF K RK RGHVSAG GR+GKHRKHPGGRG AGG HHHR DKYHPGYFGKVGMR+
Sbjct: 1 MPTRFSKTRKHRGHVSAGKGRVGKHRKHPGGRGMAGGQHHHRTNLDKYHPGYFGKVGMRH 60
Query: 61 FHKLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKS--KAPVIDVTNYGYFKVLGKGVLPA 118
FH LRN + P +NI+KLW+L+P E +++ + + APVID+ ++GY K+LGKG LP
Sbjct: 61 FHLLRNHQWAPILNIEKLWTLVPAEAREKYVSGAATETAPVIDLLSHGYAKLLGKGRLP- 119
Query: 119 NQPVVVKAKLISKIAEKKIKENGGAVLLTA 148
P+VV+A+ +S AE+KIKE GG + L A
Sbjct: 120 QVPIVVRARYVSAEAERKIKEAGGVIELVA 149
>RL2A_ERYGR (P78987) 60S ribosomal protein L27a (L29)
Length = 149
Score = 185 bits (470), Expect = 3e-47
Identities = 91/150 (60%), Positives = 108/150 (71%), Gaps = 3/150 (2%)
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
M T K RK RGHVSAGHGR+GKHRKHPGGRG AGG HHHR DKYHPGYFGKVGMRY
Sbjct: 1 MPTHLSKTRKHRGHVSAGHGRVGKHRKHPGGRGLAGGQHHHRTNMDKYHPGYFGKVGMRY 60
Query: 61 FHKLRNQFFCPTVNIDKLWSLLPQEVKDQ--AANDKSKAPVIDVTNYGYFKVLGKGVLPA 118
FHK N F+ P +N++KLWSL+P E ++ ++ + PVID+ GY KVLGKG +P
Sbjct: 61 FHKQGNHFWKPVLNLEKLWSLIPAEKREAYLSSTNPDVIPVIDLLPLGYSKVLGKGRIP- 119
Query: 119 NQPVVVKAKLISKIAEKKIKENGGAVLLTA 148
P+VV+A+ SK AE+KI E GG V L A
Sbjct: 120 KVPLVVRARWFSKEAERKITEAGGVVELVA 149
>R28A_SCHPO (P36585) 60S ribosomal protein L28-A (L27A) (L29)
Length = 148
Score = 184 bits (466), Expect = 8e-47
Identities = 91/149 (61%), Positives = 110/149 (73%), Gaps = 2/149 (1%)
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
M T K RK RGHVSAGHGRIGKHRKHPGGRG AGG+ H R FDKYHPGYFGKVGMR
Sbjct: 1 MPTHVSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRR 60
Query: 61 FHKLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKSK-APVIDVTNYGYFKVLGKGVLPAN 119
FH ++N + PTVN+D+LW+LLP E +D+ ++ APVI+V GY KVLGKG LP
Sbjct: 61 FHLMKNPLWRPTVNLDRLWTLLPNEARDKYLGKNTEVAPVINVLQSGYGKVLGKGRLP-E 119
Query: 120 QPVVVKAKLISKIAEKKIKENGGAVLLTA 148
PV+V+ + +S+ AE+KIK+ GG V L A
Sbjct: 120 TPVIVQTRYVSRRAEEKIKQAGGVVELIA 148
>R28B_SCHPO (P57728) 60S ribosomal protein L28-B
Length = 148
Score = 181 bits (458), Expect = 7e-46
Identities = 88/149 (59%), Positives = 111/149 (74%), Gaps = 2/149 (1%)
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
M T K RK RGHVSAGHGRIGKHRKHPGGRG AGG+ H R FDKYHPGYFGKVGMR
Sbjct: 1 MPTHTSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRR 60
Query: 61 FHKLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKSK-APVIDVTNYGYFKVLGKGVLPAN 119
FH ++N + PTVN+D+LW+L+P E +++ ++ APVI+V GY KVLGKG LP +
Sbjct: 61 FHLMKNPLWRPTVNLDRLWTLVPNETREKYLGKNTEVAPVINVLQSGYGKVLGKGRLP-D 119
Query: 120 QPVVVKAKLISKIAEKKIKENGGAVLLTA 148
PV+++ + +S+ AE+KIK+ GG V L A
Sbjct: 120 TPVIIQTRYVSRRAEEKIKQAGGVVELIA 148
>RL2A_TENMO (Q27021) 60S ribosomal protein L27a
Length = 148
Score = 179 bits (453), Expect = 3e-45
Identities = 85/149 (57%), Positives = 110/149 (73%), Gaps = 2/149 (1%)
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
M+T KK RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGK+GMR
Sbjct: 1 MSTHKKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKLGMRN 60
Query: 61 FHKLRNQFFCPTVNIDKLWSLLPQEVKDQAAN-DKSKAPVIDVTNYGYFKVLGKGVLPAN 119
+H RN + P +N+DKLW+L+ ++ + + N + KAPVID+ GY+K+LGKG N
Sbjct: 61 YHLRRNSKWAPAINLDKLWTLVSEQTRSKYQNHPEGKAPVIDIVKAGYYKLLGKGACLTN 120
Query: 120 QPVVVKAKLISKIAEKKIKENGGAVLLTA 148
++ + ++++ E KIK GGA +L+A
Sbjct: 121 LSLLKPSFSLNRL-EDKIKAVGGACVLSA 148
>RL2A_TRYBB (O15883) 60S ribosomal protein L27a (L29)
Length = 145
Score = 165 bits (418), Expect = 3e-41
Identities = 84/150 (56%), Positives = 105/150 (70%), Gaps = 7/150 (4%)
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
M TRFKK R +RG G+GR+GKHRKHP GRGNAGG HHHRI F KYHPGYFGK GM +
Sbjct: 1 MPTRFKKTRHQRGSTFCGYGRVGKHRKHPSGRGNAGGEHHHRINFRKYHPGYFGKCGMNH 60
Query: 61 FHKLRNQFFCPTVNIDKLWSLLPQEVKDQAANDK--SKAPVIDVTNYGYFKVLGKGVLPA 118
+HK +N + PT+N+D L L+ KD+A K PVID+ GY K+LG G L A
Sbjct: 61 YHKKKNTTWKPTINLDNLTKLM---AKDEAMKAKKGEVLPVIDLLANGYSKLLGNGHLQA 117
Query: 119 NQPVVVKAKLISKIAEKKIKENGGAVLLTA 148
P +VKA+ +SK+A+KKI++ GGAV+L A
Sbjct: 118 --PCIVKARWVSKLADKKIRKAGGAVVLQA 145
>RL2A_ENCCU (O62581) 60S ribosomal protein L27a
Length = 147
Score = 139 bits (351), Expect = 2e-33
Identities = 66/147 (44%), Positives = 95/147 (63%), Gaps = 1/147 (0%)
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
MT R KK RK RGHVS G+GR+GKHRKH GGRG AGG H + F ++HP Y GK GMR
Sbjct: 1 MTDRVKKTRKLRGHVSHGYGRVGKHRKHSGGRGLAGGFSHMKTFFTRFHPDYHGKRGMRV 60
Query: 61 FHKLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKSKAPVIDVTNYGYFKVLGKGVLPANQ 120
+H+ N + ++ +LW ++P+E + ++ K PVIDV +GY V+G G L +
Sbjct: 61 YHRKENSDYARPISSARLWGMIPKEQRYDFLDNPEKVPVIDVREFGYHVVVG-GKLSLER 119
Query: 121 PVVVKAKLISKIAEKKIKENGGAVLLT 147
P+VVKA+ + A+++I + GG ++T
Sbjct: 120 PIVVKARYFTPSAKEEITKVGGKWIIT 146
>RL2A_PIG (Q29333) 60S ribosomal protein L27a (Fragment)
Length = 53
Score = 100 bits (248), Expect = 1e-21
Identities = 43/52 (82%), Positives = 45/52 (85%)
Query: 3 TRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFG 54
+R + RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYH GYFG
Sbjct: 2 SRLRXTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHXGYFG 53
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.321 0.140 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,518,599
Number of Sequences: 164201
Number of extensions: 923121
Number of successful extensions: 2330
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2219
Number of HSP's gapped (non-prelim): 59
length of query: 148
length of database: 59,974,054
effective HSP length: 100
effective length of query: 48
effective length of database: 43,553,954
effective search space: 2090589792
effective search space used: 2090589792
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0172.11