BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0171.3
(96 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
LMG3_MOUSE (Q9R0B6) Laminin gamma-3 chain precursor (Laminin 12 ... 30 1.1
CYP1_BRUMA (Q27450) Peptidylprolyl isomerase 1 (EC 5.2.1.8) (Pep... 30 1.4
G65A_DROME (Q8IQ72) Putative chemosensory receptor 65a 29 1.8
ATK1_ARATH (Q07970) Kinesin 1 (Kinesin-like protein A) 29 1.8
MLF_DROME (Q9NKV0) Myeloid leukemia factor (Myelodysplasia-myelo... 29 2.3
KE4L_CAEEL (Q9XTQ7) Hypothetical Ke4-like protein H13N06.5 in ch... 28 3.1
BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 prot... 28 5.2
Z433_HUMAN (Q8N7K0) Zinc finger protein 433 27 6.8
YFAL_ECOLI (P45508) Hypothetical protein yfaL precursor 27 6.8
TTCE_HUMAN (Q96N46) Tetratricopeptide repeat protein 14 (TPR rep... 27 6.8
RT2A_ACTPL (P15377) RTX-II toxin determinant A (APX-IIA) (Hemoly... 27 6.8
HLYA_ACTSU (Q00951) Hemolysin (Cytolysin II) (CLY-IIA) (HLY-IIA)... 27 6.8
FLIC_ECOLI (P04949) Flagellin 27 6.8
DIP2_MOUSE (Q8BWT5) Disco-interacting protein 2 homolog 27 6.8
DIP2_HUMAN (Q14689) Disco-interacting protein 2 homolog 27 6.8
YD14_SCHPO (Q10237) Hypothetical protein C4G9.04c in chromosome I 27 8.9
>LMG3_MOUSE (Q9R0B6) Laminin gamma-3 chain precursor (Laminin 12 gamma
3)
Length = 1581
Score = 30.0 bits (66), Expect = 1.1
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 20/84 (23%)
Query: 21 NVSFILRLLFEGEEGHDHCSCLRKERRAKIARAD--------------------SNTETG 60
N LL EG++G+ H S L + +A + RA S T
Sbjct: 1416 NAKLSRALLREGKQGYRHASRLASQTQATLRRASRLLLTSEAHKQELEEAKQVTSGLSTV 1475
Query: 61 EQSIKESRVAVSSSTSSLANSTCK 84
E+ ++ESR+++ T L+ K
Sbjct: 1476 ERQVRESRISLEKDTKVLSELLVK 1499
>CYP1_BRUMA (Q27450) Peptidylprolyl isomerase 1 (EC 5.2.1.8)
(Peptidylprolyl cis-trans isomerase 1) (PPIase 1)
(Cyclophilin) (BmCYP-1)
Length = 843
Score = 29.6 bits (65), Expect = 1.4
Identities = 17/53 (32%), Positives = 26/53 (48%)
Query: 43 RKERRAKIARADSNTETGEQSIKESRVAVSSSTSSLANSTCKDHPGGRNRVIN 95
R RR++ S++ + E S +SR SSS SS +S+ R+R N
Sbjct: 791 RHSRRSRKRSPSSSSSSSESSSSDSRSTASSSASSKRSSSSDSSRSSRSRSSN 843
>G65A_DROME (Q8IQ72) Putative chemosensory receptor 65a
Length = 408
Score = 29.3 bits (64), Expect = 1.8
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 1 MAKLPNVFSLRHLLVLSLAL 20
MA+ PN+F L+HLL+L LAL
Sbjct: 152 MARHPNLFRLKHLLLLLLAL 171
>ATK1_ARATH (Q07970) Kinesin 1 (Kinesin-like protein A)
Length = 793
Score = 29.3 bits (64), Expect = 1.8
Identities = 17/59 (28%), Positives = 27/59 (44%), Gaps = 2/59 (3%)
Query: 22 VSFILRLLFEGEEGHDHCSCLRKERRAKIARADSNTETGEQ--SIKESRVAVSSSTSSL 78
VS +L E D C R+E+ A++A GE+ +KE ++A +SL
Sbjct: 160 VSLHEKLAKEESSTQDAIECHRREKEARVAAEKVQASLGEELDKVKEEKMAAKQKVTSL 218
>MLF_DROME (Q9NKV0) Myeloid leukemia factor (Myelodysplasia-myeloid
leukemia factor) (dMLF)
Length = 309
Score = 28.9 bits (63), Expect = 2.3
Identities = 14/48 (29%), Positives = 25/48 (51%)
Query: 47 RAKIARADSNTETGEQSIKESRVAVSSSTSSLANSTCKDHPGGRNRVI 94
R +I +A ++T+TG ++E+R V S + + H G R +I
Sbjct: 117 RPQIYQASTSTKTGPGGVRETRRTVQDSRTGVKKMAIGHHIGERAHII 164
>KE4L_CAEEL (Q9XTQ7) Hypothetical Ke4-like protein H13N06.5 in
chromosome X
Length = 515
Score = 28.5 bits (62), Expect = 3.1
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 11/56 (19%)
Query: 20 LNVSFILRLLFEGEEGHDHC----------SCLRKERRAKIARADSNTETGEQSIK 65
L V ++R+L GE+GH H K+ + K+A+ + E EQSIK
Sbjct: 311 LTVEKLVRIL-RGEDGHGHSHGHSHGGEKKETKEKDSKDKVAKKEEKPEKDEQSIK 365
>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1
protein)
Length = 1362
Score = 27.7 bits (60), Expect = 5.2
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 11/60 (18%)
Query: 40 SCLRKERRAKIARAD-----------SNTETGEQSIKESRVAVSSSTSSLANSTCKDHPG 88
SCLRK+R+ + + D S++E+ S S + S T S K HPG
Sbjct: 673 SCLRKKRKPQAEKVDVIAGSSKMKGFSSSESESSSESSSSDSEDSETEMAPKSKKKGHPG 732
>Z433_HUMAN (Q8N7K0) Zinc finger protein 433
Length = 673
Score = 27.3 bits (59), Expect = 6.8
Identities = 20/72 (27%), Positives = 30/72 (40%), Gaps = 4/72 (5%)
Query: 17 SLALNVSFILRLLFEGEEGHDHCSCLRKERRAKIARADSNTETGEQSIKESRVAVSSSTS 76
+L N+ + LFE +EGH H L + + + T TG +S + S S
Sbjct: 61 NLRRNLRIVGERLFESKEGHQHGEILTQVPDDMLKK----TTTGVKSCESSVYGEVGSAH 116
Query: 77 SLANSTCKDHPG 88
S N +D G
Sbjct: 117 SSLNRHIRDDTG 128
>YFAL_ECOLI (P45508) Hypothetical protein yfaL precursor
Length = 1250
Score = 27.3 bits (59), Expect = 6.8
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 50 IARADSNTETGEQSIKESRVAV--SSSTSSLANSTCKDHP 87
+ AD+N TGE I+ V + S+S ++ ++ C+D P
Sbjct: 337 VLNADNNDFTGEMQIENGEVTLGRSNSLMNVGDTHCQDDP 376
>TTCE_HUMAN (Q96N46) Tetratricopeptide repeat protein 14 (TPR repeat
protein 14)
Length = 770
Score = 27.3 bits (59), Expect = 6.8
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 42 LRKERRAKIARADSNTETGEQSIKESRVAVSSSTSSLANSTCKDHPGGRN 91
L++E+R K R S + + S ES V+ SSS+SS + K H R+
Sbjct: 462 LKEEKRLKKKRRKSTSSSSVSSADES-VSSSSSSSSSGHKRHKKHKRNRS 510
>RT2A_ACTPL (P15377) RTX-II toxin determinant A (APX-IIA) (Hemolysin
IIA) (HLY-IIA) (Cytolysin IIA) (CLY-IIA)
Length = 956
Score = 27.3 bits (59), Expect = 6.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 29 LFEGEEGHDHCSCLRKERRAKIARADSNTETGEQSIK 65
+ +G +GHD R E A + A + TE G S+K
Sbjct: 629 VIDGGDGHDRVHYSRGEYGALVIDATAETEKGSYSVK 665
>HLYA_ACTSU (Q00951) Hemolysin (Cytolysin II) (CLY-IIA) (HLY-IIA)
(CYTC) (APPA)
Length = 956
Score = 27.3 bits (59), Expect = 6.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 29 LFEGEEGHDHCSCLRKERRAKIARADSNTETGEQSIK 65
+ +G +GHD R E A + A + TE G S+K
Sbjct: 629 VIDGGDGHDRVHYSRGEYGALVIDATAETEKGSYSVK 665
>FLIC_ECOLI (P04949) Flagellin
Length = 497
Score = 27.3 bits (59), Expect = 6.8
Identities = 17/80 (21%), Positives = 33/80 (41%)
Query: 17 SLALNVSFILRLLFEGEEGHDHCSCLRKERRAKIARADSNTETGEQSIKESRVAVSSSTS 76
S N+ + + + +G+D + K+ + AD N TG S+K SS +
Sbjct: 293 SATANLGAVSLVKLQDSKGNDTDTYALKDTNGNLYAADVNETTGAVSVKTITYTDSSGAA 352
Query: 77 SLANSTCKDHPGGRNRVINL 96
S + G+ V+++
Sbjct: 353 SSPTAVKLGGDDGKTEVVDI 372
>DIP2_MOUSE (Q8BWT5) Disco-interacting protein 2 homolog
Length = 1523
Score = 27.3 bits (59), Expect = 6.8
Identities = 15/23 (65%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 68 RVAVSSSTSSLANSTCKDHPGGR 90
RV SSTSS A+ST HPGGR
Sbjct: 129 RVIQGSSTSSSASST-SSHPGGR 150
>DIP2_HUMAN (Q14689) Disco-interacting protein 2 homolog
Length = 1571
Score = 27.3 bits (59), Expect = 6.8
Identities = 15/23 (65%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 68 RVAVSSSTSSLANSTCKDHPGGR 90
RV SSTSS A+ST HPGGR
Sbjct: 169 RVIQGSSTSSSASST-SSHPGGR 190
>YD14_SCHPO (Q10237) Hypothetical protein C4G9.04c in chromosome I
Length = 638
Score = 26.9 bits (58), Expect = 8.9
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 33 EEGHD-HCSCLRKERRAKIARADSNTETGEQSIKESRVAVSSSTSSLANSTCKD 85
EEG H +CL++ R ++ SNT T Q++ E+ AVSS+ + KD
Sbjct: 545 EEGRIFHATCLQEVRPSE--NKHSNTNTSTQNLAEA--AVSSNIKNATGDASKD 594
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.317 0.131 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,833,249
Number of Sequences: 164201
Number of extensions: 286197
Number of successful extensions: 968
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 956
Number of HSP's gapped (non-prelim): 21
length of query: 96
length of database: 59,974,054
effective HSP length: 72
effective length of query: 24
effective length of database: 48,151,582
effective search space: 1155637968
effective search space used: 1155637968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0171.3