BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0170.6
(1596 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei... 486 e-136
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei... 483 e-135
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei... 483 e-135
POL2_DROME (P20825) Retrovirus-related Pol polyprotein from tran... 344 1e-93
POL3_DROME (P04323) Retrovirus-related Pol polyprotein from tran... 342 5e-93
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 335 6e-91
POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from tran... 328 7e-89
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 268 1e-70
POLY_DROME (P10401) Retrovirus-related Pol polyprotein from tran... 267 2e-70
POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic pro... 201 1e-50
POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic pro... 200 2e-50
POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic pro... 199 7e-50
POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic pro... 198 9e-50
POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic pro... 195 7e-49
POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic prot... 188 1e-46
POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic prot... 181 1e-44
POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;... 159 8e-38
M860_ARATH (P92523) Hypothetical mitochondrial protein AtMg00860... 147 2e-34
POL_GALV (P21414) Pol polyprotein [Contains: Protease (EC 3.4.23... 142 7e-33
POL_RTBVP (P27502) Polyprotein (P194 protein) [Contains: Coat pr... 137 3e-31
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
type 1
Length = 1333
Score = 486 bits (1250), Expect = e-136
Identities = 294/874 (33%), Positives = 463/874 (52%), Gaps = 43/874 (4%)
Query: 618 PGRGREHCITIQEGKGPVNVRPYRYPHHHKNEIEKQVREMLSAGIIRQSTSAYSSPVILV 677
P +G E + + + + +R Y P + ++ + L +GIIR+S + + PV+ V
Sbjct: 396 PIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFV 455
Query: 678 KKKDQTW*MCVDYRALNSVTVPDKFPIPVIEELLDELHGAVFFSKLDLKSGYHQVRVREE 737
KK+ T M VDY+ LN P+ +P+P+IE+LL ++ G+ F+KLDLKS YH +RVR+
Sbjct: 456 PKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKG 515
Query: 738 DVHKTAFRTHEGHYEYMVMPFGLMNAPSTFQSLMNEVFRPMLRRGVLVFFDDILVYSKTW 797
D HK AFR G +EY+VMP+G+ AP+ FQ +N + V+ + DDIL++SK+
Sbjct: 516 DEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSE 575
Query: 798 SDHMLHLERVLEVLQHHQLTANKKKCQFATKFVEYLGHLISEQGVAVDPNKVLSVKSWPE 857
S+H+ H++ VL+ L++ L N+ KC+F V+++G+ ISE+G + V W +
Sbjct: 576 SEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQ 635
Query: 858 PKNVKGVRGFLGLTGYYRKFIQNYGKIARPLTELTKKDA-FNWGKQAQQAFEDLKEKLTT 916
PKN K +R FLG Y RKFI ++ PL L KKD + W QA E++K+ L +
Sbjct: 636 PKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVS 695
Query: 917 APVLALPDFSQEFRLECDASGIGIGAILLYGKH------PIAYFSKALGPRNLAKSAYEK 970
PVL DFS++ LE DAS + +GA+L KH P+ Y+S + L S +K
Sbjct: 696 PPVLRHFDFSKKILLETDASDVAVGAVLSQ-KHDDDKYYPVGYYSAKMSKAQLNYSVSDK 754
Query: 971 ELMAVALAIQHWRPYLLG--RKFVVSTDQRSLKEFLHQKIVTGDQQ--NWAAKLLGYNFE 1026
E++A+ +++HWR YL F + TD R+L + + +++ W L +NFE
Sbjct: 755 EMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFE 814
Query: 1027 IIYKPGKTNQGADALSRIDEAGELRPLVSYPLWEEQGV---------------IADENQK 1071
I Y+PG N ADALSRI + E P S E+ + + E
Sbjct: 815 INYRPGSANHIADALSRIVDETEPIPKDS----EDNSINFVNQISITDDFKNQVVTEYTN 870
Query: 1072 DPKLCQIVSEVALDPQAHPGYRVVQGTLL-YQDRVVISNKSSLIPKLLEEFHTTPHGGHS 1130
D KL +++ D + ++ G L+ +D++++ N + L +++++H H
Sbjct: 871 DTKLLNLLNNE--DKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHP 928
Query: 1131 GFLRTYRRIATNLYWRGMTKTIQEFV*ACDVCQRHKYLASSPAGLLQPLPIPERVWEDIS 1190
G I W+G+ K IQE+V C CQ +K P G LQP+P ER WE +S
Sbjct: 929 GIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLS 988
Query: 1191 LNFIIGLPRSRGFEAIFVVVDRLTKYSHFIPLKHPYTARSVAEIFAKEIIRLHGVPSSII 1250
++FI LP S G+ A+FVVVDR +K + +P TA A +F + +I G P II
Sbjct: 989 MDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEII 1048
Query: 1251 SDRDPLFVSHFWKEMFRLQGTQFKMSSAYHPESDGQTEIVNRCLETYLRCFAADQPKTWA 1310
+D D +F S WK+ K S Y P++DGQTE N+ +E LRC + P TW
Sbjct: 1049 ADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWV 1108
Query: 1311 SWLHWAEYWFNTSYHSATQQTPFEAVYGRKPPVLTRWVLGETRVEAVEKDLQDRDEALRQ 1370
+ + +N + HSATQ TPFE V+ R P L+ L + + +++ Q+ + +
Sbjct: 1109 DHISLVQQSYNNAIHSATQMTPFEIVH-RYSPALSPLEL-PSFSDKTDENSQETIQVFQT 1166
Query: 1371 LKQHLVAAQERMRAQANSK-RKHQEFEVGEWVFVKIRAHRQVSLANRVHAKLAARYFGPY 1429
+K+HL +M+ + K ++ +EF+ G+ V VK + +N KLA + GP+
Sbjct: 1167 VKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSN----KLAPSFAGPF 1222
Query: 1430 PIIGRVGAVAYRLKLPEGAR--IHPVFHISLLKK 1461
++ + G Y L LP+ + FH+S L+K
Sbjct: 1223 YVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEK 1256
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
type 3
Length = 1333
Score = 483 bits (1244), Expect = e-135
Identities = 293/874 (33%), Positives = 464/874 (52%), Gaps = 43/874 (4%)
Query: 618 PGRGREHCITIQEGKGPVNVRPYRYPHHHKNEIEKQVREMLSAGIIRQSTSAYSSPVILV 677
P +G E + + + + +R Y P + ++ + L +GIIR+S + + PV+ V
Sbjct: 396 PIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFV 455
Query: 678 KKKDQTW*MCVDYRALNSVTVPDKFPIPVIEELLDELHGAVFFSKLDLKSGYHQVRVREE 737
KK+ T M VDY+ LN P+ +P+P+IE+LL ++ G+ F+KLDLKS YH +RVR+
Sbjct: 456 PKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKG 515
Query: 738 DVHKTAFRTHEGHYEYMVMPFGLMNAPSTFQSLMNEVFRPMLRRGVLVFFDDILVYSKTW 797
D HK AFR G +EY+VMP+G+ AP+ FQ +N + + V+ + D+IL++SK+
Sbjct: 516 DEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSE 575
Query: 798 SDHMLHLERVLEVLQHHQLTANKKKCQFATKFVEYLGHLISEQGVAVDPNKVLSVKSWPE 857
S+H+ H++ VL+ L++ L N+ KC+F V+++G+ ISE+G + V W +
Sbjct: 576 SEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQ 635
Query: 858 PKNVKGVRGFLGLTGYYRKFIQNYGKIARPLTELTKKDA-FNWGKQAQQAFEDLKEKLTT 916
PKN K +R FLG Y RKFI ++ PL L KKD + W QA E++K+ L +
Sbjct: 636 PKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVS 695
Query: 917 APVLALPDFSQEFRLECDASGIGIGAILLYGKH------PIAYFSKALGPRNLAKSAYEK 970
PVL DFS++ LE DAS + +GA+L KH P+ Y+S + L S +K
Sbjct: 696 PPVLRHFDFSKKILLETDASDVAVGAVLSQ-KHDDDKYYPVGYYSAKMSKAQLNYSVSDK 754
Query: 971 ELMAVALAIQHWRPYLLG--RKFVVSTDQRSLKEFLHQKIVTGDQQ--NWAAKLLGYNFE 1026
E++A+ +++HWR YL F + TD R+L + + +++ W L +NFE
Sbjct: 755 EMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFE 814
Query: 1027 IIYKPGKTNQGADALSRIDEAGELRPLVSYPLWEEQGV---------------IADENQK 1071
I Y+PG N ADALSRI + E P S E+ + + E
Sbjct: 815 INYRPGSANHIADALSRIVDETEPIPKDS----EDNSINFVNQISITDDFKNQVVTEYTN 870
Query: 1072 DPKLCQIVSEVALDPQAHPGYRVVQGTLL-YQDRVVISNKSSLIPKLLEEFHTTPHGGHS 1130
D KL +++ D + ++ G L+ +D++++ N + L +++++H H
Sbjct: 871 DTKLLNLLNNE--DKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHP 928
Query: 1131 GFLRTYRRIATNLYWRGMTKTIQEFV*ACDVCQRHKYLASSPAGLLQPLPIPERVWEDIS 1190
G I W+G+ K IQE+V C CQ +K P G LQP+P ER WE +S
Sbjct: 929 GIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLS 988
Query: 1191 LNFIIGLPRSRGFEAIFVVVDRLTKYSHFIPLKHPYTARSVAEIFAKEIIRLHGVPSSII 1250
++FI LP S G+ A+FVVVDR +K + +P TA A +F + +I G P II
Sbjct: 989 MDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEII 1048
Query: 1251 SDRDPLFVSHFWKEMFRLQGTQFKMSSAYHPESDGQTEIVNRCLETYLRCFAADQPKTWA 1310
+D D +F S WK+ K S Y P++DGQTE N+ +E LRC + P TW
Sbjct: 1049 ADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWV 1108
Query: 1311 SWLHWAEYWFNTSYHSATQQTPFEAVYGRKPPVLTRWVLGETRVEAVEKDLQDRDEALRQ 1370
+ + +N + HSATQ TPFE V+ R P L+ L + + +++ Q+ + +
Sbjct: 1109 DHISLVQQSYNNAIHSATQMTPFEIVH-RYSPALSPLEL-PSFSDKTDENSQETIQVFQT 1166
Query: 1371 LKQHLVAAQERMRAQANSK-RKHQEFEVGEWVFVKIRAHRQVSLANRVHAKLAARYFGPY 1429
+K+HL +M+ + K ++ +EF+ G+ V VK + +N KLA + GP+
Sbjct: 1167 VKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSN----KLAPSFAGPF 1222
Query: 1430 PIIGRVGAVAYRLKLPEGAR--IHPVFHISLLKK 1461
++ + G Y L LP+ + FH+S L+K
Sbjct: 1223 YVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEK 1256
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
type 2
Length = 1333
Score = 483 bits (1244), Expect = e-135
Identities = 293/874 (33%), Positives = 464/874 (52%), Gaps = 43/874 (4%)
Query: 618 PGRGREHCITIQEGKGPVNVRPYRYPHHHKNEIEKQVREMLSAGIIRQSTSAYSSPVILV 677
P +G E + + + + +R Y P + ++ + L +GIIR+S + + PV+ V
Sbjct: 396 PIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFV 455
Query: 678 KKKDQTW*MCVDYRALNSVTVPDKFPIPVIEELLDELHGAVFFSKLDLKSGYHQVRVREE 737
KK+ T M VDY+ LN P+ +P+P+IE+LL ++ G+ F+KLDLKS YH +RVR+
Sbjct: 456 PKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKG 515
Query: 738 DVHKTAFRTHEGHYEYMVMPFGLMNAPSTFQSLMNEVFRPMLRRGVLVFFDDILVYSKTW 797
D HK AFR G +EY+VMP+G+ AP+ FQ +N + + V+ + D+IL++SK+
Sbjct: 516 DEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSE 575
Query: 798 SDHMLHLERVLEVLQHHQLTANKKKCQFATKFVEYLGHLISEQGVAVDPNKVLSVKSWPE 857
S+H+ H++ VL+ L++ L N+ KC+F V+++G+ ISE+G + V W +
Sbjct: 576 SEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQ 635
Query: 858 PKNVKGVRGFLGLTGYYRKFIQNYGKIARPLTELTKKDA-FNWGKQAQQAFEDLKEKLTT 916
PKN K +R FLG Y RKFI ++ PL L KKD + W QA E++K+ L +
Sbjct: 636 PKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVS 695
Query: 917 APVLALPDFSQEFRLECDASGIGIGAILLYGKH------PIAYFSKALGPRNLAKSAYEK 970
PVL DFS++ LE DAS + +GA+L KH P+ Y+S + L S +K
Sbjct: 696 PPVLRHFDFSKKILLETDASDVAVGAVLSQ-KHDDDKYYPVGYYSAKMSKAQLNYSVSDK 754
Query: 971 ELMAVALAIQHWRPYLLG--RKFVVSTDQRSLKEFLHQKIVTGDQQ--NWAAKLLGYNFE 1026
E++A+ +++HWR YL F + TD R+L + + +++ W L +NFE
Sbjct: 755 EMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFE 814
Query: 1027 IIYKPGKTNQGADALSRIDEAGELRPLVSYPLWEEQGV---------------IADENQK 1071
I Y+PG N ADALSRI + E P S E+ + + E
Sbjct: 815 INYRPGSANHIADALSRIVDETEPIPKDS----EDNSINFVNQISITDDFKNQVVTEYTN 870
Query: 1072 DPKLCQIVSEVALDPQAHPGYRVVQGTLL-YQDRVVISNKSSLIPKLLEEFHTTPHGGHS 1130
D KL +++ D + ++ G L+ +D++++ N + L +++++H H
Sbjct: 871 DTKLLNLLNNE--DKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHP 928
Query: 1131 GFLRTYRRIATNLYWRGMTKTIQEFV*ACDVCQRHKYLASSPAGLLQPLPIPERVWEDIS 1190
G I W+G+ K IQE+V C CQ +K P G LQP+P ER WE +S
Sbjct: 929 GIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLS 988
Query: 1191 LNFIIGLPRSRGFEAIFVVVDRLTKYSHFIPLKHPYTARSVAEIFAKEIIRLHGVPSSII 1250
++FI LP S G+ A+FVVVDR +K + +P TA A +F + +I G P II
Sbjct: 989 MDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEII 1048
Query: 1251 SDRDPLFVSHFWKEMFRLQGTQFKMSSAYHPESDGQTEIVNRCLETYLRCFAADQPKTWA 1310
+D D +F S WK+ K S Y P++DGQTE N+ +E LRC + P TW
Sbjct: 1049 ADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWV 1108
Query: 1311 SWLHWAEYWFNTSYHSATQQTPFEAVYGRKPPVLTRWVLGETRVEAVEKDLQDRDEALRQ 1370
+ + +N + HSATQ TPFE V+ R P L+ L + + +++ Q+ + +
Sbjct: 1109 DHISLVQQSYNNAIHSATQMTPFEIVH-RYSPALSPLEL-PSFSDKTDENSQETIQVFQT 1166
Query: 1371 LKQHLVAAQERMRAQANSK-RKHQEFEVGEWVFVKIRAHRQVSLANRVHAKLAARYFGPY 1429
+K+HL +M+ + K ++ +EF+ G+ V VK + +N KLA + GP+
Sbjct: 1167 VKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSN----KLAPSFAGPF 1222
Query: 1430 PIIGRVGAVAYRLKLPEGAR--IHPVFHISLLKK 1461
++ + G Y L LP+ + FH+S L+K
Sbjct: 1223 YVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEK 1256
>POL2_DROME (P20825) Retrovirus-related Pol polyprotein from
transposon 297 [Contains: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1059
Score = 344 bits (883), Expect = 1e-93
Identities = 182/462 (39%), Positives = 278/462 (59%), Gaps = 9/462 (1%)
Query: 591 INSSQLEELDKLLYRF-DVVFQEKQGLPPGRGREHCITIQEGKGPVNVRPYRYPHHHKNE 649
+N + +L LL +F ++ ++E + L +H + P+ + Y H+ E
Sbjct: 163 LNQEETFKLKGLLNKFRNLEYKEGEKLTFTNTIKHVLNTTHNS-PIYSKQYPLAQTHEIE 221
Query: 650 IEKQVREMLSAGIIRQSTSAYSSPVILVKKKDQT-----W*MCVDYRALNSVTVPDKFPI 704
+E QV+EML+ G+IR+S S Y+SP +V KK + + +DYR LN +T+PD++PI
Sbjct: 222 VENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPI 281
Query: 705 PVIEELLDELHGAVFFSKLDLKSGYHQVRVREEDVHKTAFRTHEGHYEYMVMPFGLMNAP 764
P ++E+L +L +F+ +DL G+HQ+ + EE + KTAF T GHYEY+ MPFGL NAP
Sbjct: 282 PNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAP 341
Query: 765 STFQSLMNEVFRPMLRRGVLVFFDDILVYSKTWSDHMLHLERVLEVLQHHQLTANKKKCQ 824
+TFQ MN + RP+L + LV+ DDI+++S + ++H+ ++ V L L KC+
Sbjct: 342 ATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCE 401
Query: 825 FATKFVEYLGHLISEQGVAVDPNKVLSVKSWPEPKNVKGVRGFLGLTGYYRKFIQNYGKI 884
F K +LGH+++ G+ +P KV ++ S+P P K +R FLGLTGYYRKFI NY I
Sbjct: 402 FLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADI 461
Query: 885 ARPLTELTKKDAFNWGKQAQ--QAFEDLKEKLTTAPVLALPDFSQEFRLECDASGIGIGA 942
A+P+T KK ++ + +AFE LK + P+L LPDF ++F L DAS + +GA
Sbjct: 462 AKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGA 521
Query: 943 ILLYGKHPIAYFSKALGPRNLAKSAYEKELMAVALAIQHWRPYLLGRKFVVSTDQRSLKE 1002
+L HPI++ S+ L L SA EKEL+A+ A + +R YLLGR+F++++D + L+
Sbjct: 522 VLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRW 581
Query: 1003 FLHQKIVTGDQQNWAAKLLGYNFEIIYKPGKTNQGADALSRI 1044
+ K + W +L Y F+I Y GK N ADALSRI
Sbjct: 582 LHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADALSRI 623
Score = 38.5 bits (88), Expect = 0.15
Identities = 48/238 (20%), Positives = 92/238 (38%), Gaps = 13/238 (5%)
Query: 1129 HSGFLRTYRRIATNLYWRGMTKTIQEFV*ACDVCQRHKYLASSPAGLLQPLPIPERVWED 1188
H G + + N ++ IQ + C++C K + L+ P PE E
Sbjct: 763 HPGIQKMTKLFKENHFFPNSQLLIQNIINECNICNLAKTEHRNTKMPLKITPNPEHCRE- 821
Query: 1189 ISLNFIIGLPRSRGFEAIFVVVDRLTKYSHFIPLKHPYTARSV-AEIFAKEIIRLHGVPS 1247
F++ + S G I + YS F L+ T + I G P
Sbjct: 822 ---KFVVDIYSSEGKHYISCI----DIYSKFATLEQIKTKDWIECRNALMRIFNQLGKPK 874
Query: 1248 SIISDRDPLFVSHFWKEMFRLQGTQFKMSSAYHPESDGQTEIVNRCLETYLRCF-AADQP 1306
+ +DRD F S K + + ++++A + +D E +++ + +R ++D
Sbjct: 875 LLKADRDGAFSSLALKRWLEEEEVELQLNTAKNGVAD--VERLHKTINEKIRIINSSDDE 932
Query: 1307 KTWASWLHWAEYWFNTSY-HSATQQTPFEAVYGRKPPVLTRWVLGETRVEAVEKDLQD 1363
+ S + Y +N H T Q P + P+L + E ++E + +D ++
Sbjct: 933 EVKLSKIETILYTYNQKIKHDTTGQRPAQIFLYAGHPILDTQKIKEKKIEKINEDRRE 990
>POL3_DROME (P04323) Retrovirus-related Pol polyprotein from
transposon 17.6 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1058
Score = 342 bits (877), Expect = 5e-93
Identities = 195/540 (36%), Positives = 307/540 (56%), Gaps = 15/540 (2%)
Query: 514 DIVLGIEWLKTLGDTIVNWDTQLMSFWSDKKWITLQGMDTRGE-HMEALQSITATGERKP 572
D++LG + L TI D ++ + + K+ ++G+ T + H + + I T R+P
Sbjct: 91 DLLLGRKLLAEAKATISYRDQEVTLY--NNKYKLIEGIATHEQSHFQNVNMIPDTMLRQP 148
Query: 573 GLLGTRNEEKAGKQLPGEINSSQLEELDKLLYRF-DVVFQEKQGLPPGRGREHCITIQEG 631
+ E + +N+ + + L LL ++ D+ + E L +H I +
Sbjct: 149 NKISPILESDLYRL--EHLNNEEKQRLCALLQKYHDIQYHEGDKLTFTNQTKHTINTKHN 206
Query: 632 KGPVNVRPYRYPHHHKNEIEKQVREMLSAGIIRQSTSAYSSPVILVKKKD-----QTW*M 686
P+ + Y YP ++ E+E Q+++ML+ GIIR S S Y+SP+ +V KK Q + +
Sbjct: 207 L-PLYSK-YSYPQAYEQEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRI 264
Query: 687 CVDYRALNSVTVPDKFPIPVIEELLDELHGAVFFSKLDLKSGYHQVRVREEDVHKTAFRT 746
+DYR LN +TV D+ PIP ++E+L +L +F+ +DL G+HQ+ + E V KTAF T
Sbjct: 265 VIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFST 324
Query: 747 HEGHYEYMVMPFGLMNAPSTFQSLMNEVFRPMLRRGVLVFFDDILVYSKTWSDHMLHLER 806
GHYEY+ MPFGL NAP+TFQ MN++ RP+L + LV+ DDI+V+S + +H+ L
Sbjct: 325 KHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGL 384
Query: 807 VLEVLQHHQLTANKKKCQFATKFVEYLGHLISEQGVAVDPNKVLSVKSWPEPKNVKGVRG 866
V E L L KC+F + +LGH+++ G+ +P K+ +++ +P P K ++
Sbjct: 385 VFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKA 444
Query: 867 FLGLTGYYRKFIQNYGKIARPLTELTKKD--AFNWGKQAQQAFEDLKEKLTTAPVLALPD 924
FLGLTGYYRKFI N+ IA+P+T+ KK+ + AF+ LK ++ P+L +PD
Sbjct: 445 FLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPD 504
Query: 925 FSQEFRLECDASGIGIGAILLYGKHPIAYFSKALGPRNLAKSAYEKELMAVALAIQHWRP 984
F+++F L DAS + +GA+L HP++Y S+ L + S EKEL+A+ A + +R
Sbjct: 505 FTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRH 564
Query: 985 YLLGRKFVVSTDQRSLKEFLHQKIVTGDQQNWAAKLLGYNFEIIYKPGKTNQGADALSRI 1044
YLLGR F +S+D + L K W KL ++F+I Y GK N ADALSRI
Sbjct: 565 YLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALSRI 624
Score = 32.7 bits (73), Expect = 8.2
Identities = 57/296 (19%), Positives = 110/296 (36%), Gaps = 22/296 (7%)
Query: 1068 ENQKDPKLCQIVSEVALDPQAHPGYRVVQGTLLYQDRVVISNKSSLIPKLLEEFHTTPHG 1127
E+ D ++ Q ++A++ + ++++ T+L ++ + LI E+
Sbjct: 711 ESDADFEVIQAAHKLAINTKYT---KILRSTILLKNITTYAEFKELILTAHEKLL----- 762
Query: 1128 GHSGFLRTYRRIATNLYWRGMTKTIQEFV*ACDVCQRHKYLASSPAGLLQPLPIPERVWE 1187
H G +T + Y+ IQ + C +C K + + P PE E
Sbjct: 763 -HPGIQKTTKLFGETYYFPNSQLLIQNIINECSICNLAKTEHRNTDMPTKTTPKPEHCRE 821
Query: 1188 DISLNFIIGLPRSRGFEAIFVVVDRLTKYSHFIPLKHPYTARSV-AEIFAKEIIRLHGVP 1246
F+I + S G V + YS F L+ T + + I G P
Sbjct: 822 ----KFMIDIYSSEGKH----YVSCIDIYSKFATLEEIKTKDWIECKNALMRIFNQLGKP 873
Query: 1247 SSIISDRDPLFVSHFWKEMFRLQGTQFKMSSAYHPESDGQTEIVNRCLETYLRCF-AADQ 1305
+ +DRD F S K + + ++++ +D E +++ + +R +D
Sbjct: 874 KLLKADRDGAFSSLALKRWLESEEVELQLNTTKTGVAD--IERLHKTINEKIRIIKTSDD 931
Query: 1306 PKTWASWLHWAEYWFN-TSYHSATQQTPFEAVYGRKPPVLTRWVLGETRVEAVEKD 1360
+T S + +N + H T QTP P+L E ++ + D
Sbjct: 932 EETKLSKMETVLNIYNHKTKHDTTGQTPAHIFLYAGQPILDTQQNKENKINKINND 987
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 335 bits (859), Expect = 6e-91
Identities = 258/885 (29%), Positives = 415/885 (46%), Gaps = 100/885 (11%)
Query: 621 GREHCITIQEGKGPVNVRPYRYPHHHKNEIEKQVREMLSAGIIRQSTSAYSSPVILVKKK 680
G E I ++EG P+ +P P K EI K +++ML+ +IR+S S +SSPV+LVKKK
Sbjct: 929 GTECVIELKEGAEPIRQKPRPIPLALKPEIRKMIQKMLNQKVIRESKSPWSSPVVLVKKK 988
Query: 681 DQTW*MCVDYRALNSVTVPDKFPIPVIEELLDELHGAVFFSKLDLKSGYHQVRVREEDVH 740
D + MC+DYR +N V + P+P IE L L G ++ D+ +G+ Q+ + E+
Sbjct: 989 DGSIRMCIDYRKVNKVVKNNAHPLPNIEATLQSLAGKKLYTVFDMIAGFWQIPLDEKSKE 1048
Query: 741 KTAFRTHEGHYEYMVMPFGLMNAPSTFQSLMNEVFRPMLRRGVLVFFDDILVYSKTWSDH 800
TAF +E+ V+PFGL+ +P+ FQ M E+ +L V+ DD+L+ SK H
Sbjct: 1049 ITAFAIGSELFEWNVLPFGLVISPALFQGTMEEIIGDLLGVCAFVYVDDLLIASKDMEQH 1108
Query: 801 MLHLERVLEVLQHHQLTANKKKCQFATKFVEYLGHLISEQGVAVDPNKVLSVKSWPEPKN 860
+ ++ L ++ + KC A K VEYLGH ++ GV K +K + P N
Sbjct: 1109 LQDVKEALTRIRKSGMKLRASKCHIAKKEVEYLGHKVTLDGVETQEVKTDKMKQFSRPTN 1168
Query: 861 VKGVRGFLGLTGYYRKFIQNYGKIARPLTEL-TKKDAFNWGKQAQQAFEDLKEKLTTAPV 919
VK ++ FLGL GYYRKFI N+ +IA LT L + K A+ W K+ + AF++LK+ + PV
Sbjct: 1169 VKELQSFLGLVGYYRKFILNFAQIASSLTSLISAKVAWIWEKEQEIAFQELKKLVCQTPV 1228
Query: 920 LALPDF------SQEFRLECDASGIGIGAILLY-----GKHPIAYFSKALGPRNLAKSAY 968
LA PD + F + DAS GIGA+L +HPIA+ SKAL P
Sbjct: 1229 LAQPDVEAALKGDRPFMIYTDASRKGIGAVLAQEGPDGQQHPIAFASKALSPAETRYHIT 1288
Query: 969 EKELMAVALAIQHWRPYLLGRKFVVSTDQRSLKEFLHQKIVTGDQQNWAAKLLGYNFEII 1028
+ E +A+ A++ ++ + G V TD + L L + W+ ++L ++ +I+
Sbjct: 1289 DLEALAMMFALRRFKTIIYGTAITVFTDHKPLISLLKGSPLADRLWRWSIEILEFDVKIV 1348
Query: 1029 YKPGKTNQGADALSR-------IDE-------------AGELRPLVSYPLWEEQGVIADE 1068
Y GK N ADALSR ++E EL ++ W E+ DE
Sbjct: 1349 YLAGKANAVADALSRGGCPPNELEEEQTKELTSIVNAIQTELPDILDSSCWLERLKGEDE 1408
Query: 1069 NQKDP-------------KLCQIVSEVALDPQAHPGYRVVQGTLLYQDRVVISNKSSLIP 1115
K+ K+ I SE++L+ Y++V G L ++ + S++P
Sbjct: 1409 GWKEVIAALEGGKTKGTFKIVGIESEISLE-----YYKIVGGVL--KNTEIEEQSRSVVP 1461
Query: 1116 K-----LLEEFHTTPHGGHSGFLRTYRRIATNLYWRGMTKTIQEFV*ACDVC---QRHKY 1167
+ LL+E H GH G + +R + YW M ++ V C C H
Sbjct: 1462 EKIRTPLLKELHEGMLAGHFGIKKMWRMVHRKFYWPQMRVCVENCVRTCAKCLCANDHSK 1521
Query: 1168 LASS--PAGLLQPLPIPERVWEDISLNFIIGLPRSRGFEAIFVVVDRLTKYSHFIPLKHP 1225
L SS P + PL I D+ L+ +G I ++D TKY +P+
Sbjct: 1522 LTSSLTPYRMTFPLEIVACDLMDVGLSV-------QGNRYILTIIDLFTKYGTAVPIPDK 1574
Query: 1226 YTARSVAEIFAKEIIRLHG-VPSSIISDRDPLFVSHFWKEMFRLQGTQFKMSSAYHPESD 1284
A +V + F + G +P +++D+ FV+ + + + + + Y+ ++
Sbjct: 1575 -KAETVLKAFVERWAIGEGRIPLKLLTDQGKEFVNGLFAQFTHMLKIEHITTKGYNSRAN 1633
Query: 1285 GQTEIVNRCLETYLRCFAADQPKTWASWLHWAEYWFNTSYHSATQQTPFEAVYGRKPPVL 1344
G E N+ + ++ A P W + +A Y +N H T +TP ++GR
Sbjct: 1634 GAVERFNKTIMHIMKKKTA-VPMEWDDQVVYAVYAYNNCVHENTGETPMFLMHGRD---- 1688
Query: 1345 TRWVLGETRV---EAVEKDLQDRDEALRQLKQHL-----VAAQERMRAQANSK------- 1389
V+G + +AV + D DE L Q L +A + MR Q + K
Sbjct: 1689 ---VMGPLEMSGEDAVGINYADMDEYKHLLTQELLKVQKIAKEHAMREQESYKSLFDQKY 1745
Query: 1390 --RKHQEFEVGEWVFVKIRAHRQVSLANRVHAKLAARYFGPYPII 1432
+KH+ + G V ++I + + + KL ++ GPY +I
Sbjct: 1746 ASKKHRFPQPGSRVLLEIPSEKLGAQC----PKLVNKWSGPYRVI 1786
>POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from
transposon opus [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1003
Score = 328 bits (841), Expect = 7e-89
Identities = 247/845 (29%), Positives = 396/845 (46%), Gaps = 115/845 (13%)
Query: 597 EELDKLLYRFDVVFQEKQGLPP--GRGREHCITIQ---EGKGPVNVRPYRYPHHHKNEIE 651
E L+ LL F +F+ PP G E + + + P+ + Y YP + + E+E
Sbjct: 86 EILNSLLGEFPRIFE-----PPLSGMSVETAVKAEIRTNTQDPIYAKSYPYPVNMRGEVE 140
Query: 652 KQVREMLSAGIIRQSTSAYSSPVILVKKK-----DQTW*MCVDYRALNSVTVPDKFPIPV 706
+Q+ E+L GIIR S S Y+SP+ +V KK ++ + M VD++ LN+VT+PD +PIP
Sbjct: 141 RQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIPD 200
Query: 707 IEELLDELHGAVFFSKLDLKSGYHQVRVREEDVHKTAFRTHEGHYEYMVMPFGLMNAPST 766
I L L A +F+ LDL SG+HQ+ ++E D+ KTAF T G YE++ +PFGL NAP+
Sbjct: 201 INATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAI 260
Query: 767 FQSLMNEVFRPMLRRGVLVFFDDILVYSKTWSDHMLHLERVLEVLQHHQLTANKKKCQFA 826
FQ +++++ R + + V+ DDI+V+S+ + H +L VL L L N +K F
Sbjct: 261 FQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFL 320
Query: 827 TKFVEYLGHLISEQGVAVDPNKVLSVKSWPEPKNVKGVRGFLGLTGYYRKFIQNYGKIAR 886
VE+LG++++ G+ DP KV ++ P P +VK ++ FLG+T YYRKFIQ+Y K+A+
Sbjct: 321 DTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAK 380
Query: 887 PLTELTK------------KDAFNWGKQAQQAFEDLKEKLTTAPVLALPDFSQEFRLECD 934
PLT LT+ K + A Q+F DLK L ++ +LA P F++ F L D
Sbjct: 381 PLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTTD 440
Query: 935 ASGIGIGAILLYGKH----PIAYFSKALGPRNLAKSAYEKELMAVALAIQHWRPYLLGRK 990
AS IGA+L PIAY S++L + EKE++A+ ++ + R YL G
Sbjct: 441 ASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYGAG 500
Query: 991 FV-VSTDQRSLKEFLHQKIVTGDQQNWAAKLLGYNFEIIYKPGKTNQGADAL-------- 1041
+ V TD + L L + + W A++ YN E+IYKPGK+N ADAL
Sbjct: 501 TIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGKSNVVADALSRIPPQLN 560
Query: 1042 ---------------------SRIDEAGELRPLVSYPLWEEQGVIADENQKDPKLCQ--- 1077
S + ++ L P V P+ + + + + LC+
Sbjct: 561 QLSTDLDANPEDDMQSLATAHSALHDSSRLIPHVESPINVFKNQLIFDTTRSKYLCEHPF 620
Query: 1078 -----------------------------IVSEVALDPQAH-PGYRVV--QGTLLYQDRV 1105
I++ V + P+AH ++ + LLY+ R+
Sbjct: 621 PGYTRHLIPLKDGSLADLTNSLQSCLRPVIINGVKI-PEAHLQRFQSICLANFLLYKIRI 679
Query: 1106 ---VISNKSSL--IPKLLEEFHTTPHGGHSGFLRTYRRIATNLYWRGMTKTIQEFV*ACD 1160
++++ S I +++E+ H H G + ++ Y+ M+ TI+ +C
Sbjct: 680 TQRLVADVSGAEEICEIIEKEHRRAHRGPT---EIRLQLLEKYYFPRMSSTIRLQTSSCQ 736
Query: 1161 VCQRHKYLASSPAGLLQPLPIPERVWEDISLNFIIGLPRSRGFEAIFVVVDRLTKYSHFI 1220
C+ +KY LQP PIP E + ++ I L + + + + K+S F
Sbjct: 737 CCKLYKYERHPNKPNLQPTPIPNYPCEILHID-IFALEKR-------LYLSCIDKFSKFA 788
Query: 1221 PLKHPYTARSV-AEIFAKEIIRLHGVPSSIISDRDPLFVSHFWKEMFRLQGTQFKMSSAY 1279
L H + SV E + P ++SD + + R +
Sbjct: 789 KLFHLQSKASVHLRETLVEALHYFTAPKVLVSDNERGLLCPTVLNYLRSLDIDLYYAPTQ 848
Query: 1280 HPESDGQTEIVNRCLETYLRCFAADQPK-TWASWLHWAEYWFNTSYHSATQQTPFEAVYG 1338
E +GQ E + RC + P +H A +NTS HS T + P + +
Sbjct: 849 KSEVNGQVERFHSTFLEIYRCLKDELPTFKPVELVHIAVDRYNTSVHSVTNRKPADVFFD 908
Query: 1339 RKPPV 1343
R V
Sbjct: 909 RSSRV 913
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 268 bits (684), Expect = 1e-70
Identities = 151/422 (35%), Positives = 228/422 (53%), Gaps = 11/422 (2%)
Query: 634 PVNVRPYRYPHHHKNEIEKQVREMLSAGIIRQSTSAYSSPVILVKKKD------QTW*MC 687
PV + YR PH EI+ QV++++ I+ S S Y+SP++LV KK + W +
Sbjct: 314 PVYTKNYRSPHSQVEEIQAQVQKLIKDKIVEPSVSQYNSPLLLVPKKSSPNSDKKKWRLV 373
Query: 688 VDYRALNSVTVPDKFPIPVIEELLDELHGAVFFSKLDLKSGYHQVRVREEDVHKTAFRTH 747
+DYR +N + DKFP+P I+++LD+L A +FS LDL SG+HQ+ + E T+F T
Sbjct: 374 IDYRQINKKLLADKFPLPRIDDILDQLGRAKYFSCLDLMSGFHQIELDEGSRDITSFSTS 433
Query: 748 EGHYEYMVMPFGLMNAPSTFQSLMNEVFRPMLRRGVLVFFDDILVYSKTWSDHMLHLERV 807
G Y + +PFGL AP++FQ +M F + ++ DD++V + + +L V
Sbjct: 434 NGSYRFTRLPFGLKIAPNSFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEV 493
Query: 808 LEVLQHHQLTANKKKCQFATKFVEYLGHLISEQGVAVDPNKVLSVKSWPEPKNVKGVRGF 867
+ + L + +KC F V +LGH +++G+ D K ++++P P + R F
Sbjct: 494 FGKCREYNLKLHPEKCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRF 553
Query: 868 LGLTGYYRKFIQNYGKIARPLTELTKKDA-FNWGKQAQQAFEDLKEKLTTAPVLALPDFS 926
+ YYR+FI+N+ +R +T L KK+ F W + Q+AF LK +L +L PDFS
Sbjct: 554 VAFCNYYRRFIKNFADYSRHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFS 613
Query: 927 QEFRLECDASGIGIGAILLYGKH----PIAYFSKALGPRNLAKSAYEKELMAVALAIQHW 982
+EF + DAS GA+L + P+AY S+A KS E+EL A+ AI H+
Sbjct: 614 KEFCITTDASKQACGAVLTQNHNGHQLPVAYASRAFTKGESNKSTTEQELAAIHWAIIHF 673
Query: 983 RPYLLGRKFVVSTDQRSLKEFLHQKIVTGDQQNWAAKLLGYNFEIIYKPGKTNQGADALS 1042
RPY+ G+ F V TD R L + +L YNF + Y GK N ADALS
Sbjct: 674 RPYIYGKHFTVKTDHRPLTYLFSMVNPSSKLTRIRLELEEYNFTVEYLKGKDNHVADALS 733
Query: 1043 RI 1044
RI
Sbjct: 734 RI 735
Score = 111 bits (278), Expect = 1e-23
Identities = 88/363 (24%), Positives = 172/363 (47%), Gaps = 19/363 (5%)
Query: 1077 QIVSEVALDPQAHPGYRVVQGT-LLYQDRVVISNKSSLIPKLLEEFHTTP-HGGHSGFLR 1134
+I V++D + G ++++ + + V N +L H P GGH+G +
Sbjct: 855 KIFEHVSIDKFKNMGNKILKNLKVALLNPVTQINNEKEKEAILSTLHDDPIQGGHTGITK 914
Query: 1135 TYRRIATNLYWRGMTKTIQEFV*ACDVCQRHKYLASSPAGLLQPLPI---PERVWEDISL 1191
T ++ + YW+ M+K I+E+V C CQ+ K + P+ I PE ++ + +
Sbjct: 915 TLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAKTTKHTKT----PMTITETPEHAFDRVVV 970
Query: 1192 NFIIGLPRSR-GFEAIFVVVDRLTKYSHFIPLKHPYTARSVAEIFAKEIIRLHGVPSSII 1250
+ I LP+S G E ++ LTKY IP+ + +A++VA+ + I +G + I
Sbjct: 971 DTIGPLPKSENGNEYAVTLICDLTKYLVAIPIANK-SAKTVAKAIFESFILKYGPMKTFI 1029
Query: 1251 SDRDPLFVSHFWKEMFRLQGTQFKMSSAYHPESDGQTEIVNRCLETYLRCFAADQPKTWA 1310
+D + + ++ + + S+A+H ++ G E +R L Y+R + + W
Sbjct: 1030 TDMGTEYKNSIITDLCKYLKIKNITSTAHHHQTVGVVERSHRTLNEYIRSYISTDKTDWD 1089
Query: 1311 SWLHWAEYWFNTSYHSATQQTPFEAVYGRKPPVLTRWVLGETRVEAVEKDLQDRDEALRQ 1370
WL + Y FNT+ P+E V+GR + + ++ ++E + + D+ ++
Sbjct: 1090 VWLQYFVYCFNTTQSMVHNYCPYELVFGRTSNLPKHF----NKLHSIE-PIYNIDDYAKE 1144
Query: 1371 LKQHLVAAQERMR--AQANSKRKHQEFEVGEWVFVKIRAHRQVSLANRVHAKLAARYFGP 1428
K L A R R +A+ ++ + +++ + +++ +V L N V KL +Y GP
Sbjct: 1145 SKYRLEVAYARARKLLEAHKEKNKENYDL-KVKDIELEVGDKVLLRNEVGHKLDFKYTGP 1203
Query: 1429 YPI 1431
Y I
Sbjct: 1204 YKI 1206
>POLY_DROME (P10401) Retrovirus-related Pol polyprotein from
transposon gypsy [Contains: Reverse transcriptase (EC
2.7.7.49); Endonuclease]
Length = 1035
Score = 267 bits (683), Expect = 2e-70
Identities = 155/430 (36%), Positives = 241/430 (56%), Gaps = 20/430 (4%)
Query: 634 PVNVRPYRYPHHHKNEIEKQVREMLSAGIIRQSTSAYSSPVILVKKK------DQTW*MC 687
PV R Y + + +V+++L GIIR S S Y+SP +V KK + +
Sbjct: 181 PVYSRAYPTLMGVSDFVNNEVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAFGNPNKRLV 240
Query: 688 VDYRALNSVTVPDKFPIPVIEELLDELHGAVFFSKLDLKSGYHQVRVREEDVHKTAFRTH 747
+D+R LN T+PD++P+P I +L L A FF+ LDLKSGYHQ+ + E D KT+F +
Sbjct: 241 IDFRKLNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSFSVN 300
Query: 748 EGHYEYMVMPFGLMNAPSTFQSLMNEVFRPMLRRGVLVFFDDILVYSKTWSDHMLHLERV 807
G YE+ +PFGL NA S FQ +++V R + + V+ DD++++S+ SDH+ H++ V
Sbjct: 301 GGKYEFCRLPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTV 360
Query: 808 LEVLQHHQLTANKKKCQFATKFVEYLGHLISEQGVAVDPNKVLSVKSWPEPKNVKGVRGF 867
L+ L + +++K +F + VEYLG ++S+ G DP KV +++ +PEP V VR F
Sbjct: 361 LKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSF 420
Query: 868 LGLTGYYRKFIQNYGKIARPLTE------------LTKKDAFNWGKQAQQAFEDLKEKLT 915
LGL YYR FI+++ IARP+T+ ++KK + + + AF+ L+ L
Sbjct: 421 LGLASYYRVFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILA 480
Query: 916 TAPV-LALPDFSQEFRLECDASGIGIGAILLYGKHPIAYFSKALGPRNLAKSAYEKELMA 974
+ V L PDF + F L DAS GIGA+L PI S+ L + E+EL+A
Sbjct: 481 SEDVILKYPDFKKPFDLTTDASASGIGAVLSQEGRPITMISRTLKQPEQNYATNERELLA 540
Query: 975 VALAIQHWRPYLLG-RKFVVSTDQRSLKEFLHQKIVTGDQQNWAAKLLGYNFEIIYKPGK 1033
+ A+ + +L G R+ + TD + L + + + W + + +N ++ YKPGK
Sbjct: 541 IVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHNAKVFYKPGK 600
Query: 1034 TNQGADALSR 1043
N ADALSR
Sbjct: 601 ENFVADALSR 610
Score = 68.6 bits (166), Expect = 1e-10
Identities = 69/290 (23%), Positives = 111/290 (37%), Gaps = 38/290 (13%)
Query: 1120 EFHTTPHG-GHSGFLRTYRRIATNLYWRGMTKTIQEFV*ACDVCQRHKYLASSPAGLLQP 1178
E T H H +++ + Y+ M +E V C VC + KY L
Sbjct: 740 EIVTAEHNRAHRAAQENIKQVLRDYYFPKMGSLAKEVVANCRVCTQAKYDRHPKKQELGE 799
Query: 1179 LPIPERVWEDISLNFIIGLPRSRGFEAIFVVVDRLTKYSHFIPLKHPYTARSVAEIFAK- 1237
PIP E + ++ S + +D+ +KY+ + P +R++ +I A
Sbjct: 800 TPIPSYTGEMVHIDIF-----STDRKLFLTCIDKFSKYA----IVQPVVSRTIVDITAPL 850
Query: 1238 -EIIRLHGVPSSIISDRDPLFVSHFWKEMFRLQ-GTQFKMSSAYHPESDGQTEIVNRCLE 1295
+II L ++ D +P F S M + G + H S+GQ E + L
Sbjct: 851 LQIINLFPNIKTVYCDNEPAFNSETVTSMLKNSFGIDIVNAPPLHSSSNGQVERFHSTLA 910
Query: 1296 TYLRCFAADQPKT-WASWLHWAEYWFNTSYHSATQQTPFEAVYGRKPPVLTRWVLGETRV 1354
RC D+ + A +N + HS T++ P E V+
Sbjct: 911 EIARCLKLDKKTNDTVELILRATIEYNKTVHSVTRERPIEVVH----------------- 953
Query: 1355 EAVEKDLQDRDEALRQLKQHLVAAQERMRAQANSKRKHQEFEVGEWVFVK 1404
E ++K LV AQ+ + N R+++ FEVGE VFVK
Sbjct: 954 -------PGAHERCLEIKARLVKAQQDSIGRNNPSRQNRVFEVGERVFVK 996
>POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 679
Score = 201 bits (512), Expect = 1e-50
Identities = 173/638 (27%), Positives = 295/638 (46%), Gaps = 49/638 (7%)
Query: 446 VDSGATHNFVDCFLVRRLGWEVVDTPRMTVKLGDGYKSQAQGRCAGLKIEMGEYHLRCSP 505
VD+GA+ F++ W + P M VK+ DG C + + + R
Sbjct: 44 VDTGASLCIASKFVIPEEHWVNAERPIM-VKIADGSSITISKVCKDIDLIIAGEIFRIPT 102
Query: 506 QLFDLGGPDIVLGIEWLKTLGDTIVNWDTQLMSFWSDKKWITLQGMDTRGEH------ME 559
G D ++G + + L + + + T + F +K + TR +E
Sbjct: 103 VYQQESGIDFIIGNNFCQ-LYEPFIQF-TDRVIFTKNKSYPVHIAKLTRAVRVGTEGFLE 160
Query: 560 ALQSITATGERKPGLLGTRNEEKA---------GKQLPGE---INSSQLEELDKLLYRFD 607
+++ + T + +P + T E G++L E I +++++++LL +
Sbjct: 161 SMKKRSKTQQPEPVNISTNKIENPLEEIAILSEGRRLSEEKLFITQQRMQKIEELLEKVC 220
Query: 608 VVFQEKQGLPPGRGREHC---ITIQEGKGPVNVRPYRYPHHHKNEIEKQVREMLSAGIIR 664
+ L P + ++ I + + + V+P +Y + E +KQ++E+L +I+
Sbjct: 221 ----SENPLDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIK 276
Query: 665 QSTSAYSSPVILV----KKKDQTW*MCVDYRALNSVTVPDKFPIPVIEELLDELHGAVFF 720
S S + +P LV +K+ M V+Y+A+N TV D + +P +ELL + G F
Sbjct: 277 PSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIF 336
Query: 721 SKLDLKSGYHQVRVREEDVHKTAFRTHEGHYEYMVMPFGLMNAPSTFQSLMNEVFRPMLR 780
S D KSG+ QV + +E TAF +GHYE+ V+PFGL APS FQ M+E FR + R
Sbjct: 337 SSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFR-VFR 395
Query: 781 RGVLVFFDDILVYSKTWSDHMLHLERVLEVLQHHQLTANKKKCQFATKFVEYLGHLISEQ 840
+ V+ DDILV+S DH+LH+ +L+ H + +KKK Q K + +LG I E
Sbjct: 396 KFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEG 455
Query: 841 GVAVDPNKVLSVKSWPEP-KNVKGVRGFLGLTGYYRKFIQNYGKIARPLTELTKKDA-FN 898
+ + + +P+ ++ K ++ FLG+ Y +I +I +PL K++ +
Sbjct: 456 THKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWR 515
Query: 899 WGKQAQQAFEDLKEKLTTAPVLALPDFSQEFRLECDASGIGIGAILL-----YGKHPIAY 953
W K+ + +K+ L P L P ++ +E DAS G +L G +
Sbjct: 516 WTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELI 575
Query: 954 FSKALGPRNLAKSAY---EKELMAVALAIQHWRPYLLGRKFVVSTDQRSLKEFLHQKIVT 1010
A G A+ Y +KE +AV I+ + YL F++ TD K F++
Sbjct: 576 CRYASGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLN-YK 634
Query: 1011 GDQQ-----NWAAKLLGYNFEIIYKPGKTNQGADALSR 1043
GD + W A L Y+F++ + G N AD LSR
Sbjct: 635 GDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSR 672
>POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 679
Score = 200 bits (509), Expect = 2e-50
Identities = 171/638 (26%), Positives = 295/638 (45%), Gaps = 49/638 (7%)
Query: 446 VDSGATHNFVDCFLVRRLGWEVVDTPRMTVKLGDGYKSQAQGRCAGLKIEMGEYHLRCSP 505
VD+GA+ F++ W + P M VK+ DG C + + + +
Sbjct: 44 VDTGASLCIASKFVIPEEHWVNAERPIM-VKIADGSSITISKVCKDIDLIIAREIFKIPT 102
Query: 506 QLFDLGGPDIVLGIEWLKTLGDTIVNWDTQLMSFWSDKKWITLQGMDTRGEH------ME 559
G D ++G + + L + + + T + F +K + TR +E
Sbjct: 103 VYQQESGIDFIIGNNFCQ-LYEPFIQF-TDRVIFTKNKSYPVHIAKLTRAVRVGTEGFLE 160
Query: 560 ALQSITATGERKPGLLGTRNEEKA---------GKQLPGE---INSSQLEELDKLLYRFD 607
+++ + T + +P + T E G++L E I +++++++LL +
Sbjct: 161 SMKKRSKTQQPEPVNISTNKIENPLKEIAILSEGRRLSEEKLFITQQRMQKIEELLEKVC 220
Query: 608 VVFQEKQGLPPGRGREHC---ITIQEGKGPVNVRPYRYPHHHKNEIEKQVREMLSAGIIR 664
+ L P + ++ I + + + V+P +Y + E +KQ++E+L +I+
Sbjct: 221 ----SENPLDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIK 276
Query: 665 QSTSAYSSPVILV----KKKDQTW*MCVDYRALNSVTVPDKFPIPVIEELLDELHGAVFF 720
S S + +P LV +K+ M V+Y+A+N T+ D + +P +ELL + G F
Sbjct: 277 PSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIF 336
Query: 721 SKLDLKSGYHQVRVREEDVHKTAFRTHEGHYEYMVMPFGLMNAPSTFQSLMNEVFRPMLR 780
S D KSG+ QV + +E TAF +GHYE+ V+PFGL APS FQ M+E FR + R
Sbjct: 337 SSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFR-VFR 395
Query: 781 RGVLVFFDDILVYSKTWSDHMLHLERVLEVLQHHQLTANKKKCQFATKFVEYLGHLISEQ 840
+ V+ DDILV+S DH+LH+ +L+ H + +KKK Q K + +LG I E
Sbjct: 396 KFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEG 455
Query: 841 GVAVDPNKVLSVKSWPEP-KNVKGVRGFLGLTGYYRKFIQNYGKIARPLTELTKKDA-FN 898
+ + + +P+ ++ K ++ FLG+ Y +I +I +PL K++ +
Sbjct: 456 THKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWK 515
Query: 899 WGKQAQQAFEDLKEKLTTAPVLALPDFSQEFRLECDASGIGIGAILL-----YGKHPIAY 953
W K+ + +K+ L P L P ++ +E DAS G +L G +
Sbjct: 516 WTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELI 575
Query: 954 FSKALGPRNLAKSAY---EKELMAVALAIQHWRPYLLGRKFVVSTDQRSLKEFLHQKIVT 1010
A G A+ Y +KE +AV I+ + YL F++ TD K F++
Sbjct: 576 CRYASGSFKAAERNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLN-YK 634
Query: 1011 GDQQ-----NWAAKLLGYNFEIIYKPGKTNQGADALSR 1043
GD + W A L Y+F++ + G N AD LSR
Sbjct: 635 GDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSR 672
>POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 679
Score = 199 bits (505), Expect = 7e-50
Identities = 171/638 (26%), Positives = 295/638 (45%), Gaps = 49/638 (7%)
Query: 446 VDSGATHNFVDCFLVRRLGWEVVDTPRMTVKLGDGYKSQAQGRCAGLKIEMGEYHLRCSP 505
VD+GA+ F++ W + P M VK+ DG C + + + +
Sbjct: 44 VDTGASLCIASKFVIPEEHWVNAERPIM-VKIADGSSITISKVCKDIDLIIAGEIFKIPT 102
Query: 506 QLFDLGGPDIVLGIEWLKTLGDTIVNWDTQLMSFWSDKKWITLQGMDTRGEH------ME 559
G D ++G + + L + + + T + F +K + TR +E
Sbjct: 103 VYQQESGIDFIIGNNFCQ-LYEPFIQF-TDRVIFTKNKSYPVHITKLTRAVRVGIEGFLE 160
Query: 560 ALQSITATGERKPGLLGTRNEEKA---------GKQLPGE---INSSQLEELDKLLYRFD 607
+++ + T + +P + T E G++L E I +++++++LL +
Sbjct: 161 SMKKRSKTQQPEPVNISTNKIENPLEEIAILSEGRRLSEEKLFITQQRMQKIEELLEKVC 220
Query: 608 VVFQEKQGLPPGRGREHC---ITIQEGKGPVNVRPYRYPHHHKNEIEKQVREMLSAGIIR 664
+ L P + ++ I + + + V+P +Y + E +KQ++E+L +I+
Sbjct: 221 ----SENPLDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIK 276
Query: 665 QSTSAYSSPVILV----KKKDQTW*MCVDYRALNSVTVPDKFPIPVIEELLDELHGAVFF 720
S S + +P LV +K+ M V+Y+A+N T+ D + +P +ELL + G F
Sbjct: 277 PSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIF 336
Query: 721 SKLDLKSGYHQVRVREEDVHKTAFRTHEGHYEYMVMPFGLMNAPSTFQSLMNEVFRPMLR 780
S D KSG+ QV + +E TAF +GHYE+ V+PFGL APS FQ M+E FR + R
Sbjct: 337 SSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFR-VFR 395
Query: 781 RGVLVFFDDILVYSKTWSDHMLHLERVLEVLQHHQLTANKKKCQFATKFVEYLGHLISEQ 840
+ V+ DDILV+S DH+LH+ +L+ H + +KKK Q K + +LG I E
Sbjct: 396 KFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEG 455
Query: 841 GVAVDPNKVLSVKSWPEP-KNVKGVRGFLGLTGYYRKFIQNYGKIARPLTELTKKDA-FN 898
+ + + +P+ ++ K ++ FLG+ Y +I +I +PL K++ +
Sbjct: 456 THKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWK 515
Query: 899 WGKQAQQAFEDLKEKLTTAPVLALPDFSQEFRLECDASGIGIGAILL-----YGKHPIAY 953
W K+ + +K+ L P L P ++ +E DAS G +L G +
Sbjct: 516 WTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELI 575
Query: 954 FSKALGPRNLAKSAY---EKELMAVALAIQHWRPYLLGRKFVVSTDQRSLKEFLHQKIVT 1010
A G A+ Y +KE +AV I+ + YL F++ TD K F++
Sbjct: 576 CRYASGSFKAAERNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLN-YK 634
Query: 1011 GDQQ-----NWAAKLLGYNFEIIYKPGKTNQGADALSR 1043
GD + W A L Y+F++ + G N AD LSR
Sbjct: 635 GDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSR 672
>POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 674
Score = 198 bits (504), Expect = 9e-50
Identities = 175/634 (27%), Positives = 300/634 (46%), Gaps = 48/634 (7%)
Query: 446 VDSGATHNFVDCFLVRRLGWEVVDTPRMTVKLGDGYKSQAQGRCAGLKIEM-GE-YHLRC 503
VD+GA+ F++ W + P M VK+ DG C + + + GE +H+
Sbjct: 46 VDTGASLCIASKFVIPEEHWINAERPIM-VKIADGSSITINKVCRDIDLIIAGEIFHI-- 102
Query: 504 SPQLFDL-GGPDIVLGIEWLKTLGDTIVNWDTQLMSFWSDKKWITLQGMDTRGEH----- 557
P ++ G D ++G + + L + + + T + F D+ + TR
Sbjct: 103 -PTVYQQESGIDFIIGNNFCQ-LYEPFIQF-TDRVIFTKDRTYPVHIAKLTRAVRVGTEG 159
Query: 558 -MEALQSITATGERKPGLLGTRNEE--KAGKQLPGE---INSSQLEELDKLLYRFDVVFQ 611
+E+++ + T + +P + T G++L E I +++++++LL +
Sbjct: 160 FLESMKKRSKTQQPEPVNISTNKIAILSEGRRLSEEKLFITQQRMQKIEELLEKVC---- 215
Query: 612 EKQGLPPGRGREHC---ITIQEGKGPVNVRPYRYPHHHKNEIEKQVREMLSAGIIRQSTS 668
+ L P + ++ I + + + V+P +Y + E +KQ++E+L +I+ S S
Sbjct: 216 SENPLDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKS 275
Query: 669 AYSSPVILV----KKKDQTW*MCVDYRALNSVTVPDKFPIPVIEELLDELHGAVFFSKLD 724
+ +P LV +K+ M V+Y+A+N TV D + P +ELL + G FS D
Sbjct: 276 PHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNPPNKDELLTLIRGKKIFSSFD 335
Query: 725 LKSGYHQVRVREEDVHKTAFRTHEGHYEYMVMPFGLMNAPSTFQSLMNEVFRPMLRRGVL 784
KSG+ QV + +E TAF +GHYE+ V+PFGL APS FQ M+E FR + R+
Sbjct: 336 CKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFR-VFRKFCC 394
Query: 785 VFFDDILVYSKTWSDHMLHLERVLEVLQHHQLTANKKKCQFATKFVEYLGHLISEQGVAV 844
V+ DDILV+S DH+LH+ +L+ H + +KKK Q K + +LG I E
Sbjct: 395 VYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKP 454
Query: 845 DPNKVLSVKSWPEP-KNVKGVRGFLGLTGYYRKFIQNYGKIARPLTELTKKDA-FNWGKQ 902
+ + + +P+ ++ K ++ FLG+ Y +I +I +PL K++ + W K+
Sbjct: 455 QGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKE 514
Query: 903 AQQAFEDLKEKLTTAPVLALPDFSQEFRLECDASGIGIGAILL-----YGKHPIAYFSKA 957
+ +K+ L P L P ++ +E DAS G +L G + A
Sbjct: 515 DTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYA 574
Query: 958 LGPRNLAKSAY---EKELMAVALAIQHWRPYLLGRKFVVSTDQRSLKEFLHQKIVTGDQQ 1014
G A+ Y +KE +AV I+ + YL F++ TD K F++ GD +
Sbjct: 575 SGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLN-YKGDSK 633
Query: 1015 -----NWAAKLLGYNFEIIYKPGKTNQGADALSR 1043
W A L Y+F++ + G N AD LSR
Sbjct: 634 LGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSR 667
>POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 680
Score = 195 bits (496), Expect = 7e-49
Identities = 169/638 (26%), Positives = 293/638 (45%), Gaps = 49/638 (7%)
Query: 446 VDSGATHNFVDCFLVRRLGWEVVDTPRMTVKLGDGYKSQAQGRCAGLKIEMGEYHLRCSP 505
VD+GA+ F++ W + P M VK+ DG C + + + +
Sbjct: 45 VDTGASLCIASKFVIPEEHWVNAERPIM-VKIADGSSITISKVCKDIDLIIVGVIFKIPT 103
Query: 506 QLFDLGGPDIVLGIEWLKTLGDTIVNWDTQLMSFWSDKKWITLQGMDTRGEH------ME 559
G D ++G + + L + + + T + F +K + TR +E
Sbjct: 104 VYQQESGIDFIIGNNFCQ-LYEPFIQF-TDRVIFTKNKSYPVHIAKLTRAVRVGTEGFLE 161
Query: 560 ALQSITATGERKPGLLGTRNEEKA---------GKQLPGE---INSSQLEELDKLLYRFD 607
+++ + T + +P + T E G++L E I ++++ ++LL +
Sbjct: 162 SMKKRSKTQQPEPVNISTNKIENPLEEIAILSEGRRLSEEKLFITQQRMQKTEELLEKVC 221
Query: 608 VVFQEKQGLPPGRGREHC---ITIQEGKGPVNVRPYRYPHHHKNEIEKQVREMLSAGIIR 664
+ L P + ++ I + + + V+P +Y + E +KQ++E+L +I+
Sbjct: 222 ----SENPLDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIK 277
Query: 665 QSTSAYSSPVILVKKKDQTW*----MCVDYRALNSVTVPDKFPIPVIEELLDELHGAVFF 720
S S + +P LV + + M V+Y+A+N TV D + +P +ELL + G F
Sbjct: 278 PSKSPHMAPAFLVNNEAENGRGNKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIF 337
Query: 721 SKLDLKSGYHQVRVREEDVHKTAFRTHEGHYEYMVMPFGLMNAPSTFQSLMNEVFRPMLR 780
S D KSG+ QV + +E TAF +GHYE+ V+PFGL APS FQ M+E FR + R
Sbjct: 338 SSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFR-VFR 396
Query: 781 RGVLVFFDDILVYSKTWSDHMLHLERVLEVLQHHQLTANKKKCQFATKFVEYLGHLISEQ 840
+ V+ DDI+V+S DH+LH+ +L+ H + +KKK Q K + +LG I E
Sbjct: 397 KFCCVYVDDIVVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEG 456
Query: 841 GVAVDPNKVLSVKSWPEP-KNVKGVRGFLGLTGYYRKFIQNYGKIARPLTELTKKDA-FN 898
+ + + +P+ ++ K ++ FLG+ Y +I N ++ +PL K++ +
Sbjct: 457 THKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPNLAQMRQPLQAKLKENVPWK 516
Query: 899 WGKQAQQAFEDLKEKLTTAPVLALPDFSQEFRLECDASGIGIGAILL-----YGKHPIAY 953
W K+ + +K+ L P L P ++ +E DAS G +L G +
Sbjct: 517 WTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELI 576
Query: 954 FSKALGPRNLAKSAY---EKELMAVALAIQHWRPYLLGRKFVVSTDQRSLKEFLHQKIVT 1010
G A+ Y +KE +AV I+ + YL F++ TD K F++
Sbjct: 577 CRYRSGSFKAAERNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLN-YK 635
Query: 1011 GDQQ-----NWAAKLLGYNFEIIYKPGKTNQGADALSR 1043
GD + W A L Y+F++ + G N AD LSR
Sbjct: 636 GDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSR 673
>POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 666
Score = 188 bits (477), Expect = 1e-46
Identities = 169/636 (26%), Positives = 289/636 (44%), Gaps = 64/636 (10%)
Query: 446 VDSGATHNFVDCFLVRRLGWEVVDTPR-MTVKLGDGYKSQAQGRCAGLKIEMGEYHLRCS 504
VD+GA+ +++ WE ++P+ + VK+ + + C LK++
Sbjct: 53 VDTGASLCIASRYIIPEELWE--NSPKDIQVKIANQELIKITKVCKNLKVKFAGKSFEIP 110
Query: 505 PQLFDLGGPDIVLGIEWLKTLGDTIVNWDTQLMSFWSDKKWITLQGMDTRGEHMEALQSI 564
G D ++G + + L + + W+ ++ ++ M ++ +
Sbjct: 111 TVYQQETGIDFLIGNNFCR-LYNPFIQWEDRIAFHLKNE--------------MVLIKKV 155
Query: 565 T-ATGERKPGLLGTRNEEKAGKQLPGEINSSQL-----------EELDKLLYRFDVVFQE 612
T A P L ++ +Q+PG S + E+ K+ D V E
Sbjct: 156 TKAFSVSNPSFLENMKKDSKTEQIPGTNISKNIINPEERYFLITEKYQKIEQLLDKVCSE 215
Query: 613 KQGLPPGRGREHC---ITIQEGKGPVNVRPYRYPHHHKNEIEKQVREMLSAGIIRQSTSA 669
+ P + ++ I + + + V+P Y + KQ++E+L G+I S S
Sbjct: 216 NP-IDPIKSKQWMKASIKLIDPLKVIRVKPMSYSPQDREGFAKQIKELLDLGLIIPSKSQ 274
Query: 670 YSSPVILVKKKDQTW*----MCVDYRALNSVTVPDKFPIPVIEELLDELHGAVFFSKLDL 725
+ SP LV+ + + M V+Y+A+N T+ D +P ++ELL L G FS D
Sbjct: 275 HMSPAFLVENEAERRRGKKRMVVNYKAINQATIGDSHNLPNMQELLTLLRGKSIFSSFDC 334
Query: 726 KSGYHQVRVREEDVHKTAFRTHEGHYEYMVMPFGLMNAPSTFQSLMNEVFRPMLRRGVLV 785
KSG+ QV + EE TAF +GH+++ V+PFGL APS FQ M + +V
Sbjct: 335 KSGFWQVVLDEESQKLTAFTCPQGHFQWKVVPFGLKQAPSIFQRHMQTALNG-ADKFCMV 393
Query: 786 FFDDILVYSKTWSDHMLHLERVLEVLQHHQLTANKKKCQFATKFVEYLGHLISEQGVAVD 845
+ DDI+V+S + DH H+ VL++++ + + +KKK + + +LG L ++G
Sbjct: 394 YVDDIIVFSNSELDHYNHVYAVLKIVEKYGIILSKKKANLFKEKINFLG-LEIDKGTHCP 452
Query: 846 PNKVL-SVKSWPEP-KNVKGVRGFLGLTGYYRKFIQNYGKIARPLTELTKKD-AFNWGKQ 902
N +L ++ +P+ ++ K ++ FLG+ Y +I +I +PL KKD +NW +
Sbjct: 453 QNHILENIHKFPDRLEDKKHLQRFLGVLTYAETYIPKLAEIRKPLQVKLKKDVTWNWTQS 512
Query: 903 AQQAFEDLKEKLTTAPVLALPDFSQEFRLECDASGIGIGAIL----LYGKHPIAYFSKAL 958
+ +K+ L + P L LP +E DAS G +L L G I +S
Sbjct: 513 DSDYVKKIKKNLGSFPKLYLPKPEDHLIIETDASDSFWGGVLKARALDGVELICRYSS-- 570
Query: 959 GPRNLAKSAY---EKELMAVALAIQHWRPYLLGRKFVVSTDQRSLKEFLHQKIVTGDQ-- 1013
G A+ Y +KEL+AV I + YL +F V TD ++ FL + GD
Sbjct: 571 GSFKQAEKNYHSNDKELLAVKQVITKFSAYLTPVRFTVRTDNKNFTYFLRINL-KGDSKQ 629
Query: 1014 ------QNWAAKLLGYNFEIIYKPGKTNQGADALSR 1043
QNW +K Y F++ + G N AD L+R
Sbjct: 630 GRLVRWQNWFSK---YQFDVEHLEGVKNVLADCLTR 662
>POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 659
Score = 181 bits (460), Expect = 1e-44
Identities = 168/649 (25%), Positives = 292/649 (44%), Gaps = 54/649 (8%)
Query: 431 MKLRGTINGVPVVVLVDSGATHNFVDCFLVRRLGWEVVDTPRMTVKLGDGYKSQAQGRCA 490
+K G + + VD+G++ +++ W+ + P + +K+ +G Q C+
Sbjct: 18 LKFPGYQTNLDLHCYVDTGSSLCMASKYVIPEEYWQTAEKP-LNIKIANGKIIQLTKVCS 76
Query: 491 GLKIEMGEYHLRCSPQLFDLGGPDIVLGIEWLKTLGDTIVNWDTQLMSFWSDKKWITLQG 550
L I +G G D++LG + + I D + F +K+ + +
Sbjct: 77 KLPIRLGGERFLIPTLFQQESGIDLLLGNNFCQLYSPFIQYTDR--IYFHLNKQSVII-- 132
Query: 551 MDTRGEHMEALQSITATGERKPGLLGTRNEEKAGKQLPGEINSSQ---LEE----LDKLL 603
G+ +A Q K L + + K + P I S+Q LEE +D++L
Sbjct: 133 ----GKITKAYQYGV-----KGFLESMKKKSKVNRPEPINITSNQHLFLEEGGNHVDEML 183
Query: 604 YRFDVV-----------FQEKQGLPPGRGREHC---ITIQEGKGPVNVRPYRYPHHHKNE 649
Y + + + P + ++ I + + K V V+P Y + E
Sbjct: 184 YEIQISKFSAIEEMLERVSSENPIDPEKSKQWMTATIELIDPKTVVKVKPMSYSPSDREE 243
Query: 650 IEKQVREMLSAGIIRQSTSAYSSPVILVKKKDQTW*----MCVDYRALNSVTVPDKFPIP 705
++Q++E+L +I+ S S + SP LV+ + + M V+Y+A+N T D +P
Sbjct: 244 FDRQIKELLELKVIKPSKSTHMSPAFLVENEAERRRGKKRMVVNYKAMNKATKGDAHNLP 303
Query: 706 VIEELLDELHGAVFFSKLDLKSGYHQVRVREEDVHKTAFRTHEGHYEYMVMPFGLMNAPS 765
+ELL + G +S D KSG QV + +E TAF +GHY++ V+PFGL APS
Sbjct: 304 NKDELLTLVRGKKIYSSFDCKSGLWQVLLDKESQLLTAFTCPQGHYQWNVVPFGLKQAPS 363
Query: 766 TFQSLMNEVFRPMLRRGVLVFFDDILVYSKTW-SDHMLHLERVLEVLQHHQLTANKKKCQ 824
F + V+ DDILV+S T +H +H+ +L + + +KKK Q
Sbjct: 364 IFPKTYANSHSNQYSKYCCVYVDDILVFSNTGRKEHYIHVLNILRRCEKLGIILSKKKAQ 423
Query: 825 FATKFVEYLGHLISEQGVAVDPNKVLS-VKSWPEP-KNVKGVRGFLGLTGYYRKFIQNYG 882
+ + +LG L +QG N +L + +P+ ++ K ++ FLG+ Y +I
Sbjct: 424 LFKEKINFLG-LEIDQGTHCPQNHILEHIHKFPDRIEDKKQLQRFLGILTYASDYIPKLA 482
Query: 883 KIARPLTELTKKDA-FNWGKQAQQAFEDLKEKLTTAPVLALPDFSQEFRLECDASGIGIG 941
I +PL K+D+ + W Q +K+ L + P L P+ + + +E DAS G
Sbjct: 483 SIRKPLQSKLKEDSTWTWNDTDSQYMAKIKKNLKSFPKLYHPEPNDKLVIETDASEEFWG 542
Query: 942 AILLYGKHPIAYFSK-ALGPRNLAKSAY---EKELMAVALAIQHWRPYLLGRKFVVSTDQ 997
IL + Y + A G A+ Y EKEL+AV I+ + YL +F++ TD
Sbjct: 543 GILKAIHNSHEYICRYASGSFKAAERNYHSNEKELLAVIRVIKKFSIYLTPSRFLIRTDN 602
Query: 998 RSLKEFLHQKIVTGDQQ-----NWAAKLLGYNFEIIYKPGKTNQGADAL 1041
++ F++ + GD++ W L Y+F++ + G N AD L
Sbjct: 603 KNFTHFVNINL-KGDRKQGRLVRWQMWLSQYDFDVEHIAGTKNVFADFL 650
>POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;
Protease (EC 3.4.23.-); Reverse transcriptase (EC
2.7.7.49); Ribonuclease H (EC 3.1.26.4)]
Length = 1886
Score = 159 bits (401), Expect = 8e-38
Identities = 117/420 (27%), Positives = 204/420 (47%), Gaps = 28/420 (6%)
Query: 652 KQVREMLSAGIIRQSTSAYSSPVILV-----------KKKDQTW*MCVDYRALNSVTVPD 700
+Q+ +L +IR S S + S +V K+K M +Y+ LN T D
Sbjct: 1420 RQINLLLQMKVIRPSESKHRSTAFIVRSGTEIDPITGKEKKGKERMVFNYKLLNENTESD 1479
Query: 701 KFPIPVIEELLDELHGAVFFSKLDLKSGYHQVRVREEDVHKTAFRTHEGHYEYMVMPFGL 760
++ +P I ++ ++ + +SK DLKSG+ QV + EE V TAF YE++VMPFGL
Sbjct: 1480 QYSLPGINTIISKVGRSKIYSKFDLKSGFWQVAMEEESVPWTAFLAGNKLYEWLVMPFGL 1539
Query: 761 MNAPSTFQSLMNEVFRPMLRRGVLVFFDDILVYSKTWSDHMLHLERVLEVLQHHQLTANK 820
NAP+ FQ M+ VF+ + + V+ DDILV+S+T H HL +L++ + + L +
Sbjct: 1540 KNAPAIFQRKMDNVFKG-TEKFIAVYIDDILVFSETAEQHSQHLYTMLQLCKENGLILSP 1598
Query: 821 KKCQFATKFVEYLGHLISEQGVAVDPNKVLSVKSWPEPK--NVKGVRGFLGLTGYYRKFI 878
K + T +++LG + + + P+ + + + + K +G+R +LG+ Y R +I
Sbjct: 1599 TKMKIGTPEIDFLGASLGCTKIKLQPHIISKICDFSDEKLATPEGMRSWLGILSYARNYI 1658
Query: 879 QNYGKIARPLTE-LTKKDAFNWGKQAQQAFEDLKEKLTTAPVLALPDFSQEFRLECDASG 937
Q+ GK+ +PL + + + + +KEK+ P L LP +E D
Sbjct: 1659 QDIGKLVQPLRQKMAPTGDKRMNPETWKMVRQIKEKVKNLPDLQLPPKDSFIIIETDGCM 1718
Query: 938 IGIGAILLY--GKHPIAYFSK----ALGPRNLAKSAYEKELMAVALAIQHWRPYLLGRK- 990
G GA+ + KH + A G N KS + E+ A + ++ Y L +K
Sbjct: 1719 TGWGAVCKWKMSKHDPRSTERICAYASGSFNPIKSTIDAEIQAAIHGLDKFKIYYLDKKE 1778
Query: 991 FVVSTDQRSLKEFLHQKIVTGDQQ----NWAAKLLGYNFEIIYK--PGKTNQGADALSRI 1044
++ +D ++ +F ++ + ++ L G + ++ GK N ADALSR+
Sbjct: 1779 LIIRSDCEAIIKFYNKTNENKPSRVRWLTFSDFLTGLGITVTFEHIDGKHNGLADALSRM 1838
>M860_ARATH (P92523) Hypothetical mitochondrial protein AtMg00860
(ORF158)
Length = 158
Score = 147 bits (371), Expect = 2e-34
Identities = 71/131 (54%), Positives = 91/131 (69%), Gaps = 2/131 (1%)
Query: 801 MLHLERVLEVLQHHQLTANKKKCQFATKFVEYLGH--LISEQGVAVDPNKVLSVKSWPEP 858
M HL VL++ + HQ AN+KKC F + YLGH +IS +GV+ DP K+ ++ WPEP
Sbjct: 1 MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60
Query: 859 KNVKGVRGFLGLTGYYRKFIQNYGKIARPLTELTKKDAFNWGKQAQQAFEDLKEKLTTAP 918
KN +RGFLGLTGYYR+F++NYGKI RPLTEL KK++ W + A AF+ LK +TT P
Sbjct: 61 KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLP 120
Query: 919 VLALPDFSQEF 929
VLALPD F
Sbjct: 121 VLALPDLKLPF 131
>POL_GALV (P21414) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1165
Score = 142 bits (358), Expect = 7e-33
Identities = 125/450 (27%), Positives = 203/450 (44%), Gaps = 46/450 (10%)
Query: 585 KQLPGEINSSQLEELDKLLYRFDVVFQEKQGL------PPGRGREHCITIQEGKGPVNVR 638
K +P I+ S L+ F V+ E+ G+ PP + ++ G PV VR
Sbjct: 132 KPVPSSIDPSWLQ-------LFPTVWAERAGMGLANQVPPV-----VVELRSGASPVAVR 179
Query: 639 PYRYPHHHKNEIEKQVREMLSAGIIRQSTSAYSSPVILVKKKDQTW*MCVDYRALNSVT- 697
Y + I +++ L G++ S +++P++ VKK DYR + +
Sbjct: 180 QYPMSKEAREGIRPHIQKFLDLGVLVPCRSPWNTPLLPVKKPGTN-----DYRPVQDLRE 234
Query: 698 ----VPDKFP-IPVIEELLDELHGA-VFFSKLDLKSGYHQVRVREEDVHKTAF------R 745
V D P +P LL L + ++S LDLK + +R+ AF +
Sbjct: 235 INKRVQDIHPTVPNPYNLLSSLPPSYTWYSVLDLKDAFFCLRLHPNSQPLFAFEWKDPEK 294
Query: 746 THEGHYEYMVMPFGLMNAPSTFQSLMNEVFRPMLRRG----VLVFFDDILVYSKTWSDHM 801
+ G + +P G N+P+ F ++ P +L + DD+LV + T+ D
Sbjct: 295 GNTGQLTWTRLPQGFKNSPTLFDEALHRDLAPFRALNPQVVLLQYVDDLLVAAPTYEDCK 354
Query: 802 LHLERVLEVLQHHQLTANKKKCQFATKFVEYLGHLISEQGVAVDPNKVLSVKSWPEPKNV 861
+++L+ L + KK Q + V YLG+L+ E + P + +V P P
Sbjct: 355 KGTQKLLQELSKLGYRVSAKKAQLCQREVTYLGYLLKEGKRWLTPARKATVMKIPVPTTP 414
Query: 862 KGVRGFLGLTGYYRKFIQNYGKIARPLTELTKKD-AFNWGKQAQQAFEDLKEKLTTAPVL 920
+ VR FLG G+ R +I + +A PL LTK+ F W ++ QQAF+ +K+ L +AP L
Sbjct: 415 RQVREFLGTAGFCRLWIPGFASLAAPLYPLTKESIPFIWTEEHQQAFDHIKKALLSAPAL 474
Query: 921 ALPDFSQEFRLECD-ASGIGIGAI---LLYGKHPIAYFSKALGPRNLAKSAYEKELMAVA 976
ALPD ++ F L D +G+ G + L + P+AY SK L P K + AVA
Sbjct: 475 ALPDLTKPFTLYIDERAGVARGVLTQTLGPWRRPVAYLSKKLDPVASGWPTCLKAVAAVA 534
Query: 977 LAIQHWRPYLLGRKFVVSTDQRSLKEFLHQ 1006
L ++ LG+ V SL+ + Q
Sbjct: 535 LLLKDADKLTLGQNVTVIA-SHSLESIVRQ 563
Score = 71.2 bits (173), Expect = 2e-11
Identities = 98/366 (26%), Positives = 145/366 (38%), Gaps = 49/366 (13%)
Query: 1087 QAHPGYRVVQGTLLYQDRVVISNKSS----LIPKLLEEF----HTTPHGGHSGFLRTYRR 1138
QA RV+ GT Q+ + + + + L P +EF H H G L+ R
Sbjct: 774 QAALSTRVLAGTTKPQEPIEPAQEKTRPRELTPDRGKEFIKRLHQLTHLGPEKLLQLVNR 833
Query: 1139 IATNLYWRGMTKTIQEFV*ACDVCQRHKYLAS-SPAGLLQPLPIPERVWEDISLNFIIGL 1197
T+L + ++E C C + + G Q P WE ++F
Sbjct: 834 --TSLLIPNLQSAVREVTSQCQACAMTNAVTTYRETGKRQRGDRPGVYWE---VDFTEIK 888
Query: 1198 PRSRGFEAIFVVVDRLTKYSHFIPLKHPYTARSVAEIFAKEIIRLHGVPSSIISDRDPLF 1257
P G + + V +D + + P K TA V + +EI+ G+P + SD P F
Sbjct: 889 PGRYGNKYLLVFIDTFSGWVEAFPTKTE-TALIVCKKILEEILPRFGIPKVLGSDNGPAF 947
Query: 1258 VSHFWKEMFRLQGTQFKMSSAYHPESDGQTEIVNRCL-ETYLRCFAADQPKTWASWLHWA 1316
V+ + + G +K+ AY P+S GQ E +NR + ET + K W + L A
Sbjct: 948 VAQVSQGLATQLGINWKLHCAYRPQSSGQVERMNRTIKETLTKLALETGGKDWVTLLPLA 1007
Query: 1317 EYWFNTSYHSATQQTPFEAVYGRKPPVLTRWVLGETRVEAVEKDLQDRDEALRQLKQHLV 1376
+ TP+E +YG PP+L GET L D L L HL
Sbjct: 1008 LLRARNT-PGRFGLTPYEILYGGPPPILES---GET--------LGPDDRFLPVLFTHL- 1054
Query: 1377 AAQERMRAQANSKRKH----------QEFEVGEWVFVKIRAHRQVSLANRVHAKLAARYF 1426
A E +R Q + K F+VG+ V V R HR S L R+
Sbjct: 1055 KALEIVRTQIWDQIKEVYKPGTVTIPHPFQVGDQVLV--RRHRPSS--------LEPRWK 1104
Query: 1427 GPYPII 1432
GPY ++
Sbjct: 1105 GPYLVL 1110
>POL_RTBVP (P27502) Polyprotein (P194 protein) [Contains: Coat
protein; Protease (EC 3.4.23.-); Reverse transcriptase
(EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)]
Length = 1675
Score = 137 bits (344), Expect = 3e-31
Identities = 104/372 (27%), Positives = 184/372 (48%), Gaps = 20/372 (5%)
Query: 642 YPHHHKNEIEKQVREMLSAGIIRQS--TSAYSSPVILVKKKD----QTW*MCVDYRALNS 695
Y K EKQ++E+L +I+++ T + + +V+ Q + +Y+ LN
Sbjct: 1191 YTPADKEVFEKQIKELLDNKLIKKADPTCRHRTAAFIVRNHSEEVAQKPRIVYNYKRLND 1250
Query: 696 VTVPDKFPIPVIEELLDELHGAVFFSKLDLKSGYHQVRVREEDVHKTAFRTHEGHYEYMV 755
D F IP +++ + A FSK DLK+G+H ++++++ T F EG Y + V
Sbjct: 1251 NMHTDPFNIPHKISMINLIQKANIFSKFDLKAGFHHMKLKDDFKDWTTFTCSEGLYTWNV 1310
Query: 756 MPFGLMNAPSTFQSLMNEVFRPMLRRGVLVFFDDILVYSKTWSDHMLHLERVLEVLQHHQ 815
PFG+ NAP FQ M E F + + L++ DDIL+ S +H+ HL+ ++
Sbjct: 1311 CPFGIANAPCAFQRFMQESFGDL--KFALLYIDDILIASNNEKEHIEHLKIFFNRVKEVG 1368
Query: 816 LTANKKKCQFATKFVEYLGHLISEQGVAVDPNKVLSVKSWPEPK--NVKGVRGFLGLTGY 873
+KKK + K VEYLG I E +++ P+ V +K + + K +KG++ +LGL Y
Sbjct: 1369 CVLSKKKSKMFLKEVEYLGVEIKEGKISLQPHIVDKIKKFDKNKLNTLKGLQAYLGLLNY 1428
Query: 874 YRKFIQNYGKIARPLTELTKKDAFN-WGKQAQQAFEDLKEKLTTAPVLALPDFSQEFRLE 932
R +I++ K+ PL + T K+ + K+ ++ +++ L P + +E
Sbjct: 1429 ARGYIKDLSKLVGPLYKKTGKNGQRIFNKEDWNIIFKIEREVSKIKPLERPKETDYIIIE 1488
Query: 933 CDASGIGIGAILL------YGK--HPIAYFSKALGPRNLAKSAYEKELMAVALAIQHWRP 984
DAS G GA+L+ GK IA ++ ++ + E+ A+ A+ ++
Sbjct: 1489 TDASEEGWGAVLVCKPDKYSGKDTEKIAGYASGNFGEKKTWTSLDYEIEAINEALNKFQI 1548
Query: 985 YLLGRKFVVSTD 996
Y L + F + TD
Sbjct: 1549 Y-LDKDFTIRTD 1559
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.320 0.138 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 195,691,912
Number of Sequences: 164201
Number of extensions: 8896081
Number of successful extensions: 24558
Number of sequences better than 10.0: 137
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 24081
Number of HSP's gapped (non-prelim): 278
length of query: 1596
length of database: 59,974,054
effective HSP length: 124
effective length of query: 1472
effective length of database: 39,613,130
effective search space: 58310527360
effective search space used: 58310527360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 73 (32.7 bits)
Lotus: description of TM0170.6