BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0166.5
(1017 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 504 e-142
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 484 e-136
YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein 167 1e-40
M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810... 151 8e-36
YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B) 124 1e-27
YMD9_YEAST (Q03434) Transposon Ty1 protein B 120 2e-26
YME4_YEAST (Q04711) Transposon Ty1 protein B 119 4e-26
YJZ9_YEAST (P47100) Transposon Ty1 protein B 119 5e-26
YJZ7_YEAST (P47098) Transposon Ty1 protein B 118 9e-26
YMU0_YEAST (Q04670) Transposon Ty1 protein B 117 1e-25
YMT5_YEAST (Q04214) Transposon Ty1 protein B 114 1e-24
YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein 110 2e-23
M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820... 102 4e-21
M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240... 68 1e-10
POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse transcript... 62 8e-09
POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.2... 61 2e-08
POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.2... 58 1e-07
POL_MLVFF (P26809) Pol polyprotein [Contains: Protease (EC 3.4.2... 57 2e-07
POL_MLVRK (P31795) Pol polyprotein [Contains: Protease (EC 3.4.2... 57 3e-07
POL_MLVRD (P11227) Pol polyprotein [Contains: Protease (EC 3.4.2... 57 3e-07
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 504 bits (1298), Expect = e-142
Identities = 321/995 (32%), Positives = 526/995 (52%), Gaps = 47/995 (4%)
Query: 43 VINDVLLVEGLFHNLLSISQIANKGYDVIFNQTGCKAVSQTNGS-VLFSGKRKNYIYKIK 101
V+ DV V L NL+S + GY+ F + T GS V+ G + +Y+
Sbjct: 349 VLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRL---TKGSLVIAKGVARGTLYRTN 405
Query: 102 SSELLSQKVKCLMSVNDEQWI--WLRRLGHASLRKISQLSKLNLIRGLPRLKYSSEALCE 159
+ + L + DE + W +R+GH S + + L+K +LI K ++ C+
Sbjct: 406 AEICQGE----LNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLIS---YAKGTTVKPCD 458
Query: 160 ACQKGKFTKKPFKAKNVVSTTRPLELLHIDLFGPVKTESIGGKKYGLVIVDDYSRWTWVK 219
C GK + F+ + L+L++ D+ GP++ ES+GG KY + +DD SR WV
Sbjct: 459 YCLFGKQHRVSFQTSSE-RKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVY 517
Query: 220 FLRHKDETHTIFTNFITQVQKEFQTSVITVRSDHGGEFENKAFEELFNSQGISHNFSCPR 279
L+ KD+ +F F V++E + +RSD+GGE+ ++ FEE +S GI H + P
Sbjct: 518 ILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPG 577
Query: 280 TPQQNGVVERKNRTLQEMARTMMQESSMAKHLWAEAINTAYYIHNIISIRPILEKTPYEL 339
TPQ NGV ER NRT+ E R+M++ + + K W EA+ TA Y+ N P+ + P +
Sbjct: 578 TPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERV 637
Query: 340 CKGRQPDISYFHPFGSTCYMLNTKEQLGKFDSKALKCYFLGYSERSKGFRIYNIIHQTVE 399
++ S+ FG + KEQ K D K++ C F+GY + G+R+++ + + V
Sbjct: 638 WTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVI 697
Query: 400 ESIQIRF------DGKLGSEKSK--LFERFADLSIDCSEANQPKNSSEDVAPEAEASEAA 451
S + F SEK K + F + + ++++++V+ + E
Sbjct: 698 RSRDVVFRESEVRTAADMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQGEQPGEV 757
Query: 452 PTTSDQLQKKKRIAVSHP-----EELIIGNKDAPVRTRSMLKPSEETLLSLKGLVSLIEP 506
+QL + V HP + + + P R S PS E +L + EP
Sbjct: 758 IEQGEQLDEGVE-EVEHPTQGEEQHQPLRRSERP-RVESRRYPSTEYVL----ISDDREP 811
Query: 507 KSVDEAL---EDKGWILGMQEELDQFTKNDVWTLMSKPKGFHVIGTKWVFRNKLNEKGEV 563
+S+ E L E + MQEE++ KN + L+ PKG + KWVF+ K + ++
Sbjct: 812 ESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKL 871
Query: 564 TRNKARLVAQGYSQQEGIDYTETFSPVARLEAIRLLISFSVNHNITLHQMDVKSAFLNGY 623
R KARLV +G+ Q++GID+ E FSPV ++ +IR ++S + + ++ + Q+DVK+AFL+G
Sbjct: 872 VRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGD 931
Query: 624 ISEEVYVKQPPGFEDDKYPDHVYKLKKSLYGLKQAPRAWYERLSSFLLQNEFVRGKGDNT 683
+ EE+Y++QP GFE V KL KSLYGLKQAPR WY + SF+ +++ D
Sbjct: 932 LEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPC 991
Query: 684 LFCITY-KNDILIVQIYVDDIIFGSANPSLCKEFSKLMQAEFEMSMMGELKYFLGIQI-- 740
++ + +N+ +I+ +YVDD++ + L + + F+M +G + LG++I
Sbjct: 992 VYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVR 1051
Query: 741 DQRPGVTYIHQKKYTLELLKKFNMSDCNISKTPMHPTCILEKE------EVSSKVCQKLY 794
++ ++ Q+KY +L++FNM + TP+ L K+ E + + Y
Sbjct: 1052 ERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPY 1111
Query: 795 RGMIGSLLY-LTASRPDILFSVHLCARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKT 853
+GSL+Y + +RPDI +V + +RF +P + H AVK IL+YL+GTT L +
Sbjct: 1112 SSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCF-GG 1170
Query: 854 SEYTLSGFCDADFAGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATC 913
S+ L G+ DAD AGD RKS++G ++W SK Q +ALST EAEY++A
Sbjct: 1171 SDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATET 1230
Query: 914 CTQTIWMKNHLEDYGLSLKKVPIYCDNTAAISLSKNPILHSRAKHIEVKYHYIRDHVQKG 973
+ IW+K L++ GL K+ +YCD+ +AI LSKN + H+R KHI+V+YH+IR+ V
Sbjct: 1231 GKEMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDE 1290
Query: 974 TLSLEYVDTDHQWADIFTKPLAEDRFLFILENLNM 1008
+L + + T+ AD+ TK + ++F E + M
Sbjct: 1291 SLKVLKISTNENPADMLTKVVPRNKFELCKELVGM 1325
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 484 bits (1247), Expect = e-136
Identities = 321/1074 (29%), Positives = 550/1074 (50%), Gaps = 127/1074 (11%)
Query: 44 INDVLLVEGLFHNLLSISQIANKGYDVIFNQTGCKAVSQTNGSVLFSGKRKNYIYKIKSS 103
+ DVL + NL+S+ ++ G + F+++G KN + +K+S
Sbjct: 345 LEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTI-------------SKNGLMVVKNS 391
Query: 104 ELLS-------QKVKCLMSVNDEQWIWLRRLGHASLRKISQLSKLNLIRG---LPRLKYS 153
+L+ Q + +W R GH S K+ ++ + N+ L L+ S
Sbjct: 392 GMLNNVPVINFQAYSINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELS 451
Query: 154 SEALCEACQKGKFTKKPFKA-KNVVSTTRPLELLHIDLFGPVKTESIGGKKYGLVIVDDY 212
E +CE C GK + PFK K+ RPL ++H D+ GP+ ++ K Y ++ VD +
Sbjct: 452 CE-ICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQF 510
Query: 213 SRWTWVKFLRHKDETHTIFTNFITQVQKEFQTSVITVRSDHGGEFENKAFEELFNSQGIS 272
+ + +++K + ++F +F+ + + F V+ + D+G E+ + + +GIS
Sbjct: 511 THYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGIS 570
Query: 273 HNFSCPRTPQQNGVVERKNRTLQEMARTMMQESSMAKHLWAEAINTAYYIHNIISIRPIL 332
++ + P TPQ NGV ER RT+ E ARTM+ + + K W EA+ TA Y+ N I R ++
Sbjct: 571 YHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALV 630
Query: 333 E--KTPYELC------------------------KGRQPDISY------FHPFGSTCY-M 359
+ KTPYE+ +G+ D S+ + P G +
Sbjct: 631 DSSKTPYEMWHNKKPYLKHLRVFGATVYVHIKNKQGKFDDKSFKSIFVGYEPNGFKLWDA 690
Query: 360 LNTK---------EQLGKFDSKALK--CYFLGYSERSKGFRIYNIIHQTVE--------- 399
+N K ++ +S+A+K FL S+ S+ N + ++
Sbjct: 691 VNEKFIVARDVVVDETNMVNSRAVKFETVFLKDSKESENKNFPNDSRKIIQTEFPNESKE 750
Query: 400 -ESIQIRFDGKLGSEKS------KLFE-RFADLSIDCSEANQPKNSSE------------ 439
++IQ D K K+ K+ + F + S +C K+S E
Sbjct: 751 CDNIQFLKDSKESENKNFPNDSRKIIQTEFPNESKECDNIQFLKDSKESNKYFLNESKKR 810
Query: 440 ---DVAPEAEASEAAPTT--SDQLQKKKRIAVSHPEEL----IIGNKDAPVRTRSMLKPS 490
D E++ S + S+ + K I + +P + II + ++T+ + +
Sbjct: 811 KRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEIINRRSERLKTKPQISYN 870
Query: 491 EE------TLLSLKGLVSLIEPKSVDEAL--EDKG-WILGMQEELDQFTKNDVWTLMSKP 541
EE +L+ + + + P S DE +DK W + EL+ N+ WT+ +P
Sbjct: 871 EEDNSLNKVVLNAHTIFNDV-PNSFDEIQYRDDKSSWEEAINTELNAHKINNTWTITKRP 929
Query: 542 KGFHVIGTKWVFRNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETFSPVARLEAIRLLIS 601
+ +++ ++WVF K NE G R KARLVA+G++Q+ IDY ETF+PVAR+ + R ++S
Sbjct: 930 ENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILS 989
Query: 602 FSVNHNITLHQMDVKSAFLNGYISEEVYVKQPPGFEDDKYPDHVYKLKKSLYGLKQAPRA 661
+ +N+ +HQMDVK+AFLNG + EE+Y++ P G + D+V KL K++YGLKQA R
Sbjct: 990 LVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGISCNS--DNVCKLNKAIYGLKQAARC 1047
Query: 662 WYERLSSFLLQNEFVRGKGDNTLFCITYK--NDILIVQIYVDDIIFGSANPSLCKEFSKL 719
W+E L + EFV D ++ + N+ + V +YVDD++ + + + F +
Sbjct: 1048 WFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRY 1107
Query: 720 MQAEFEMSMMGELKYFLGIQIDQRPGVTYIHQKKYTLELLKKFNMSDCNISKTPMHPTCI 779
+ +F M+ + E+K+F+GI+I+ + Y+ Q Y ++L KFNM +CN TP+ P+ I
Sbjct: 1108 LMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPL-PSKI 1166
Query: 780 LEKEEVSSKVCQKLYRGMIGSLLY-LTASRPDILFSVHLCARFQSDPRETHLTAVKRILK 838
+ S + C R +IG L+Y + +RPD+ +V++ +R+ S +KR+L+
Sbjct: 1167 NYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLR 1226
Query: 839 YLKGTTNLGLMYRK--TSEYTLSGFCDADFAGDRVERKSTSGSC-HFLGSNLVTWSSKRQ 895
YLKGT ++ L+++K E + G+ D+D+AG ++RKST+G NL+ W++KRQ
Sbjct: 1227 YLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQ 1286
Query: 896 NTIALSTAEAEYVSAATCCTQTIWMKNHLEDYGLSLKK-VPIYCDNTAAISLSKNPILHS 954
N++A S+ EAEY++ + +W+K L + L+ + IY DN IS++ NP H
Sbjct: 1287 NSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHK 1346
Query: 955 RAKHIEVKYHYIRDHVQKGTLSLEYVDTDHQWADIFTKPLAEDRFLFILENLNM 1008
RAKHI++KYH+ R+ VQ + LEY+ T++Q ADIFTKPL RF+ + + L +
Sbjct: 1347 RAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400
>YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein
Length = 308
Score = 167 bits (424), Expect = 1e-40
Identities = 101/305 (33%), Positives = 168/305 (54%), Gaps = 9/305 (2%)
Query: 613 MDVKSAFLNGYISEEVYVKQPPGFEDDKYPDHVYKLKKSLYGLKQAPRAWYERLSSFLLQ 672
MDV +AFLN + E +YVKQPPGF +++ PD+V++L +YGLKQAP W E +++ L +
Sbjct: 1 MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60
Query: 673 NEFVRGKGDNTLFCITYKNDILIVQIYVDDIIFGSANPSLCKEFSKLMQAEFEMSMMGEL 732
F R +G++ L+ + + + + +YVDD++ + +P + + + + M +G++
Sbjct: 61 IGFCRHEGEHGLYFRSTSDGPIYIGVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120
Query: 733 KYFLGIQIDQRP-GVTYIHQKKYTLELLKKFNMSDCNISKTPMHPTCILEK-EEVSSKVC 790
FLG+ I Q G + + Y + K + S+ N K P C + E +S
Sbjct: 121 DKFLGLNIHQSTNGDITLSLQDY---IAKAASESEINTFKLTQTPLCNSKPLFETTSPHL 177
Query: 791 QKL--YRGMIGSLLY-LTASRPDILFSVHLCARFQSDPRETHLTAVKRILKYLKGTTNLG 847
+ + Y+ ++G LL+ RPDI + V L +RF +PR HL + +R+L+YL T ++
Sbjct: 178 KDITPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMC 237
Query: 848 LMYRKTSEYTLSGFCDADFAGDRVERKSTSGSCHFLGSNLVTWSSKR-QNTIALSTAEAE 906
L YR S+ L+ +CDA ST G L VTWSSK+ + I + + EAE
Sbjct: 238 LKYRSGSQVALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAE 297
Query: 907 YVSAA 911
Y++A+
Sbjct: 298 YITAS 302
>M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810
(ORF240b)
Length = 240
Score = 151 bits (382), Expect = 8e-36
Identities = 77/222 (34%), Positives = 123/222 (54%), Gaps = 1/222 (0%)
Query: 698 IYVDDIIFGSANPSLCKEFSKLMQAEFEMSMMGELKYFLGIQIDQRPGVTYIHQKKYTLE 757
+YVDDI+ ++ +L + + F M +G + YFLGIQI P ++ Q KY +
Sbjct: 5 LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64
Query: 758 LLKKFNMSDCNISKTPMHPTCILEKEEVSSKVCQKLYRGMIGSLLYLTASRPDILFSVHL 817
+L M DC TP+ P + + +R ++G+L YLT +RPDI ++V++
Sbjct: 65 ILNNAGMLDCKPMSTPL-PLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNI 123
Query: 818 CARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTSEYTLSGFCDADFAGDRVERKSTS 877
+ +P +KR+L+Y+KGT GL K S+ + FCD+D+AG R+ST+
Sbjct: 124 VCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTT 183
Query: 878 GSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIW 919
G C FLG N+++WS+KRQ T++ S+ E EY + A + W
Sbjct: 184 GFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B)
Length = 1770
Score = 124 bits (312), Expect = 1e-27
Identities = 97/355 (27%), Positives = 166/355 (46%), Gaps = 23/355 (6%)
Query: 55 HNLLSISQIANKGYDVIFNQTGCKAVSQTNGSVL--------FSGKRKNYIYKIKSSELL 106
++LLS+S++AN+ F + + +++G+VL F K Y+ S+L
Sbjct: 520 YDLLSLSELANQNITACFTRN---TLERSDGTVLAPIVKHGDFYWLSKKYLIPSHISKLT 576
Query: 107 SQKVKCLMSVNDEQWIWLRR-LGHASLRKISQLSKLNLIRGLPR--LKYSSEAL--CEAC 161
V SVN + + R LGHA+ R I + K N + L +++S+ + C C
Sbjct: 577 INNVNKSKSVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCPDC 636
Query: 162 QKGKFTK-KPFKAKNVV--STTRPLELLHIDLFGPVKTESIGGKKYGLVIVDDYSRWTWV 218
GK TK + K + + P + LH D+FGPV Y + D+ +R+ WV
Sbjct: 637 LIGKSTKHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWV 696
Query: 219 KFL--RHKDETHTIFTNFITQVQKEFQTSVITVRSDHGGEFENKAFEELFNSQGISHNFS 276
L R ++ +FT+ + ++ +F V+ ++ D G E+ NK + F ++GI+ ++
Sbjct: 697 YPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYT 756
Query: 277 CPRTPQQNGVVERKNRTLQEMARTMMQESSMAKHLWAEAINTAYYIHNIISIRPILEKTP 336
+ +GV ER NRTL RT++ S + HLW A+ + I N + + P +K+
Sbjct: 757 TTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSL-VSPKNDKSA 815
Query: 337 YELCKGRQPDISYFHPFGSTCYMLNTKEQLGKFDSKALKCYFLGYSERSKGFRIY 391
+ DI+ PFG ++N K + + Y L S S G+ IY
Sbjct: 816 RQHAGLAGLDITTILPFGQP-VIVNNHNPDSKIHPRGIPGYALHPSRNSYGYIIY 869
Score = 122 bits (306), Expect = 5e-27
Identities = 145/596 (24%), Positives = 262/596 (43%), Gaps = 69/596 (11%)
Query: 435 KNSSEDVAPEAEASEAAPTTSDQLQKKKRIAVSHPEELIIGNKDAPVRTRSMLKPSEETL 494
K S ED E E S D K ++ P N A ++ +KP TL
Sbjct: 1194 KRSLEDNETEIEVSR------DTWNNKNMRSLEPPRSKKRINLIAAIKGVKSIKPVRTTL 1247
Query: 495 LSLKGLVSLIEPKSVDEALEDKGWILGMQEELDQFTKNDVWTLMS-------KPKGFHVI 547
+ + + K D +E +E+ Q K + W PK VI
Sbjct: 1248 RYDEAITYNKDNKEKDRYVE------AYHKEISQLLKMNTWDTNKYYDRNDIDPK--KVI 1299
Query: 548 GTKWVFRNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETFSPVARLEAIRLLISFSVNHN 607
+ ++F N+K + T +KAR VA+G Q ++ S A+ +S +++++
Sbjct: 1300 NSMFIF----NKKRDGT-HKARFVARGDIQHPDTYDSDMQSNTVHHYALMTSLSIALDND 1354
Query: 608 ITLHQMDVKSAFLNGYISEEVYVKQPPGFEDDKYPDHVYKLKKSLYGLKQAPRAWYERLS 667
+ Q+D+ SA+L I EE+Y++ PP D + +L+KSLYGLKQ+ WYE +
Sbjct: 1355 YYITQLDISSAYLYADIKEELYIRPPPHL---GLNDKLLRLRKSLYGLKQSGANWYETIK 1411
Query: 668 SFLL---QNEFVRGKGDNTLFCITYKNDILIVQIYVDDIIFGSANPSLCKEFSKLMQAEF 724
S+L+ + VRG + +KN + + ++VDD+I S + + K+ ++ ++
Sbjct: 1412 SYLINCCDMQEVRG------WSCVFKNSQVTICLFVDDMILFSKDLNANKKIITTLKKQY 1465
Query: 725 EMSMM------GELKY-FLGIQID-QRPGVTYIHQKKYTLELLKKFNM---SDCNISKTP 773
+ ++ E++Y LG++I QR + +K E L K N+ + P
Sbjct: 1466 DTKIINLGESDNEIQYDILGLEIKYQRSKYMKLGMEKSLTEKLPKLNVPLNPKGKKLRAP 1525
Query: 774 MHPTCILEKEEV---SSKVCQKLY--RGMIGSLLYLTAS-RPDILFSVHLCARFQSDPRE 827
P ++++E+ + +K++ + +IG Y+ R D+L+ ++ A+ P
Sbjct: 1526 GQPGHYIDQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSR 1585
Query: 828 THLTAVKRILKYLKGTTNLGLMYRKTS----EYTLSGFCDADFAGDRVERKSTSGSCHFL 883
L +++++ T + L++ K + L DA + G++ KS G+ L
Sbjct: 1586 QVLDMTYELIQFMWDTRDKQLIWHKNKPTKPDNKLVAISDASY-GNQPYYKSQIGNIFLL 1644
Query: 884 GSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIWMKNHLEDYGLSLKKVPI----YCD 939
++ S + + ST EAE + ++ I + N+L L K PI D
Sbjct: 1645 NGKVIGGKSTKASLTCTSTTEAEIHAV----SEAIPLLNNLSHLVQELNKKPIIKGLLTD 1700
Query: 940 NTAAISLSKNPILHS-RAKHIEVKYHYIRDHVQKGTLSLEYVDTDHQWADIFTKPL 994
+ + IS+ K+ R + K +RD V L + Y++T AD+ TKPL
Sbjct: 1701 SRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPL 1756
>YMD9_YEAST (Q03434) Transposon Ty1 protein B
Length = 1328
Score = 120 bits (301), Expect = 2e-26
Identities = 146/599 (24%), Positives = 269/599 (44%), Gaps = 69/599 (11%)
Query: 432 NQPKNSSEDVAPEAEASEAAPTTSDQL-----QKKKRIAVSHPEELIIGNKDAPVRTRSM 486
N K S ED E + S T + + KKRI + + + K P+RT
Sbjct: 749 NSKKRSLEDNETEIKVSRDTWNTKNMRSLEPPRSKKRIHLIAAVKAVKSIK--PIRTTLR 806
Query: 487 LKPSEETLLSLKGLVSLIEP--KSVDEALEDKGWILGMQEELDQFTKNDVWTLMSKPKGF 544
+ +K IE K V++ L+ K W + + + + ++ PK
Sbjct: 807 YDEAITYNKDIKEKEKYIEAYHKEVNQLLKMKTW-----DTDEYYDRKEI-----DPK-- 854
Query: 545 HVIGTKWVFRNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETFSPVARLEAIRLLISFSV 604
VI + ++F N+K + T +KAR VA+G Q + S A+ +S ++
Sbjct: 855 RVINSMFIF----NKKRDGT-HKARFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLAL 909
Query: 605 NHNITLHQMDVKSAFLNGYISEEVYVKQPPGFEDDKYPDHVYKLKKSLYGLKQAPRAWYE 664
++N + Q+D+ SA+L I EE+Y++ PP + D + +LKKSLYGLKQ+ WYE
Sbjct: 910 DNNYYITQLDISSAYLYADIKEELYIRPPPHLGMN---DKLIRLKKSLYGLKQSGANWYE 966
Query: 665 RLSSFLLQN---EFVRGKGDNTLFCITYKNDILIVQIYVDDIIFGSANPSLCKEFSKLMQ 721
+ S+L++ E VRG + +KN + + ++VDD+I S + + K+ ++
Sbjct: 967 TIKSYLIKQCGMEEVRG------WSCVFKNSQVTICLFVDDMILFSKDLNANKKIITTLK 1020
Query: 722 AEFEMSMM------GELKY-FLGIQID-QRPGVTYIHQKKYTLELLKKFNM---SDCNIS 770
+++ ++ E++Y LG++I QR + + E + K N+
Sbjct: 1021 KQYDTKIINLGESDNEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKL 1080
Query: 771 KTPMHPTCILEKEEV---SSKVCQKLY--RGMIGSLLYLTAS-RPDILFSVHLCARFQSD 824
P P ++++E+ + +K++ + +IG Y+ R D+L+ ++ A+
Sbjct: 1081 SAPGQPGLYIDQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILF 1140
Query: 825 PRETHLTAVKRILKYLKGTTNLGLMYRKTS----EYTLSGFCDADFAGDRVERKSTSGSC 880
P L +++++ T + L++ K + L DA + G++ KS G+
Sbjct: 1141 PSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNI 1199
Query: 881 HFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIWMKNHLEDYGLSLKKVPI---- 936
+ L ++ S + + ST EAE ++++ + N+L L K PI
Sbjct: 1200 YLLNGKVIGGKSTKASLTCTSTTEAE----IHAISESVPLLNNLSYLIQELNKKPIIKGL 1255
Query: 937 YCDNTAAISLSKNPILHS-RAKHIEVKYHYIRDHVQKGTLSLEYVDTDHQWADIFTKPL 994
D+ + IS+ K+ R + K +RD V L + Y++T AD+ TKPL
Sbjct: 1256 LTDSRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPL 1314
Score = 110 bits (274), Expect = 3e-23
Identities = 97/382 (25%), Positives = 165/382 (42%), Gaps = 24/382 (6%)
Query: 47 VLLVEGLFHNLLSISQIANKGYDVIFNQTGCKAVSQTNGSVL--------FSGKRKNYIY 98
VL + ++LLS++++A F + + +++G+VL F K Y+
Sbjct: 89 VLHTPNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLL 145
Query: 99 KIKSSELLSQKVKCLMSVNDEQWIWLRR-LGHASLRKISQLSKLNLIRGLPRLKYSSEAL 157
S V S + ++ R L HA+ + I K N I +
Sbjct: 146 PSNISVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDRSSA 205
Query: 158 ----CEACQKGKFTK-KPFKAKNVV--STTRPLELLHIDLFGPVKTESIGGKKYGLVIVD 210
C C GK TK + K + ++ P + LH D+FGPV Y + D
Sbjct: 206 IDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTD 265
Query: 211 DYSRWTWVKFL--RHKDETHTIFTNFITQVQKEFQTSVITVRSDHGGEFENKAFEELFNS 268
+ +++ WV L R +D +FT + ++ +FQ SV+ ++ D G E+ N+ +
Sbjct: 266 ETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEK 325
Query: 269 QGISHNFSCPRTPQQNGVVERKNRTLQEMARTMMQESSMAKHLWAEAINTAYYIHNIISI 328
GI+ ++ + +GV ER NRTL + RT +Q S + HLW AI + + N ++
Sbjct: 326 NGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLA- 384
Query: 329 RPILEKTPYELCKGRQPDISYFHPFGSTCYMLNTKEQLGKFDSKALKCYFLGYSERSKGF 388
P +K+ + DIS PFG ++N K + + Y L S S G+
Sbjct: 385 SPKSKKSARQHAGLAGLDISTLLPFGQP-VIVNDHNPNSKIHPRGIPGYALHPSRNSYGY 443
Query: 389 RIY-NIIHQTVEESIQIRFDGK 409
IY + +TV+ + + GK
Sbjct: 444 IIYLPSLKKTVDTTNYVILQGK 465
>YME4_YEAST (Q04711) Transposon Ty1 protein B
Length = 1328
Score = 119 bits (298), Expect = 4e-26
Identities = 146/604 (24%), Positives = 265/604 (43%), Gaps = 79/604 (13%)
Query: 432 NQPKNSSEDVAPEAEASEAAPTTSDQL-----QKKKRIAVSHPEELIIGNKDAPVRTRSM 486
N K S ED E + S T + + KKRI + A V+
Sbjct: 749 NSKKRSLEDNETEIKVSRDTWNTKNMRSLEPPRSKKRIHLI-----------AAVKAVKS 797
Query: 487 LKPSEETLLSLKGLVSLIEPKSVDEALEDKGWILGMQEELDQFTKNDVWTLMS------- 539
+KP TL + + + K ++ +E +E++Q K + W
Sbjct: 798 IKPIRTTLRYDEAITYNKDIKEKEKYIE------AYHKEVNQLLKMNTWDTDKYYDRKEI 851
Query: 540 KPKGFHVIGTKWVFRNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETFSPVARLEAIRLL 599
PK VI + ++F N K + T +KAR VA+G Q + S A+
Sbjct: 852 DPK--RVINSMFIF----NRKRDGT-HKARFVARGDIQHPDTYDSGMQSNTVHHYALMTS 904
Query: 600 ISFSVNHNITLHQMDVKSAFLNGYISEEVYVKQPPGFEDDKYPDHVYKLKKSLYGLKQAP 659
+S ++++N + Q+D+ SA+L I EE+Y++ PP + D + +LKKSLYGLKQ+
Sbjct: 905 LSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHLGMN---DKLIRLKKSLYGLKQSG 961
Query: 660 RAWYERLSSFLLQN---EFVRGKGDNTLFCITYKNDILIVQIYVDDIIFGSANPSLCKEF 716
WYE + S+L++ E VRG + +KN + + ++VDD+I S + + K+
Sbjct: 962 ANWYETIKSYLIKQCGMEEVRG------WSCVFKNSQVTICLFVDDMILFSKDLNANKKI 1015
Query: 717 SKLMQAEFEMSMM------GELKY-FLGIQID-QRPGVTYIHQKKYTLELLKKFNM---S 765
++ +++ ++ E++Y LG++I QR + + E + K N+
Sbjct: 1016 ITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNP 1075
Query: 766 DCNISKTPMHPTCILEKEEV---SSKVCQKLY--RGMIGSLLYLTAS-RPDILFSVHLCA 819
P P ++++E+ + +K++ + +IG Y+ R D+L+ ++ A
Sbjct: 1076 KGRKLSAPGQPGLYIDQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLA 1135
Query: 820 RFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTS----EYTLSGFCDADFAGDRVERKS 875
+ P L +++++ T + L++ K + L DA + G++ KS
Sbjct: 1136 QHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASY-GNQPYYKS 1194
Query: 876 TSGSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIWMKNHLEDYGLSLKKVP 935
G+ + L ++ S + + ST EAE ++++ + N+L L K P
Sbjct: 1195 QIGNIYLLNGKVIGGKSTKASLTCTSTTEAE----IHAISESVPLLNNLSHLVQELNKKP 1250
Query: 936 I----YCDNTAAIS-LSKNPILHSRAKHIEVKYHYIRDHVQKGTLSLEYVDTDHQWADIF 990
I D+ + IS + N R + K +RD V L + Y++T AD+
Sbjct: 1251 ITKGLLTDSKSTISIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVM 1310
Query: 991 TKPL 994
TKPL
Sbjct: 1311 TKPL 1314
Score = 110 bits (276), Expect = 1e-23
Identities = 99/382 (25%), Positives = 169/382 (43%), Gaps = 24/382 (6%)
Query: 47 VLLVEGLFHNLLSISQIANKGYDVIFNQTGCKAVSQTNGSVL--------FSGKRKNYIY 98
VL + ++LLS++++A F + + +++G+VL F K Y+
Sbjct: 89 VLHTPNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLL 145
Query: 99 KIKSSELLSQKVKCLMSVNDEQWIWLRR-LGHASLRKISQLSKLNLIRGLPR--LKYSS- 154
S V S + ++ R L HA+ + I K N I + +SS
Sbjct: 146 PSNISVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSA 205
Query: 155 -EALCEACQKGKFTK-KPFKAKNVV--STTRPLELLHIDLFGPVKTESIGGKKYGLVIVD 210
+ C C GK TK + K + ++ P + LH D+FGPV Y + D
Sbjct: 206 IDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTD 265
Query: 211 DYSRWTWVKFL--RHKDETHTIFTNFITQVQKEFQTSVITVRSDHGGEFENKAFEELFNS 268
+ +++ WV L R +D +FT + ++ +FQ SV+ ++ D G E+ N+ +
Sbjct: 266 ETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEK 325
Query: 269 QGISHNFSCPRTPQQNGVVERKNRTLQEMARTMMQESSMAKHLWAEAINTAYYIHNIISI 328
GI+ ++ + +GV ER NRTL + RT +Q S + HLW AI + + N ++
Sbjct: 326 NGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLA- 384
Query: 329 RPILEKTPYELCKGRQPDISYFHPFGSTCYMLNTKEQLGKFDSKALKCYFLGYSERSKGF 388
P +K+ + DIS PFG ++N K + + Y L S S G+
Sbjct: 385 SPKSKKSARQHAGLAGLDISTLLPFGQP-VIVNDHNPNSKIHPRGIPGYALHPSRNSYGY 443
Query: 389 RIY-NIIHQTVEESIQIRFDGK 409
IY + +TV+ + + GK
Sbjct: 444 IIYLPSLKKTVDTTNYVILQGK 465
>YJZ9_YEAST (P47100) Transposon Ty1 protein B
Length = 1755
Score = 119 bits (297), Expect = 5e-26
Identities = 150/599 (25%), Positives = 264/599 (44%), Gaps = 69/599 (11%)
Query: 432 NQPKNSSEDVAPEAEASEAAPTTSDQL-----QKKKRIAVSHPEELIIGNKDAPVRTRSM 486
N K S ED E + S T + + KKRI + + + K P+RT
Sbjct: 1176 NSKKRSLEDNETEIKVSRDTWNTKNMRSLEPPRSKKRIHLIAAVKAVKSIK--PIRTTLR 1233
Query: 487 LKPSEETLLSLKGLVSLIEP--KSVDEALEDKGWILGMQEELDQFTKNDVWTLMSKPKGF 544
+ +K IE K V++ L+ K W + + + + ++ PK
Sbjct: 1234 YDEAITYNKDIKEKEKYIEAYHKEVNQLLKMKTW-----DTDEYYDRKEI-----DPK-- 1281
Query: 545 HVIGTKWVFRNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETFSPVARLEAIRLLISFSV 604
VI + ++F N+K + T +KAR VA+G Q + S A+ +S ++
Sbjct: 1282 RVINSMFIF----NKKRDGT-HKARFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLAL 1336
Query: 605 NHNITLHQMDVKSAFLNGYISEEVYVKQPPGFEDDKYPDHVYKLKKSLYGLKQAPRAWYE 664
++N + Q+D+ SA+L I EE+Y++ PP + D + +LKKSLYGLKQ+ WYE
Sbjct: 1337 DNNYYITQLDISSAYLYADIKEELYIRPPPHLGMN---DKLIRLKKSLYGLKQSGANWYE 1393
Query: 665 RLSSFLLQN---EFVRGKGDNTLFCITYKNDILIVQIYVDDIIFGSANPSLCKEFSKLMQ 721
+ S+L+Q E VRG + +KN + + ++VDD++ S N + K + ++
Sbjct: 1394 TIKSYLIQQCGMEEVRG------WSCVFKNSQVTICLFVDDMVLFSKNLNSNKRIIEKLK 1447
Query: 722 AEFEMSMMG------ELKY-FLGIQID-QRPGVTYIHQKKYTLELLKKFNM---SDCNIS 770
+++ ++ E++Y LG++I QR + + E + K N+
Sbjct: 1448 MQYDTKIINLGESDEEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKL 1507
Query: 771 KTPMHPTCI-----LEKEEVSSKVCQKLYRGMIGSLLYLTAS-RPDILFSVHLCARFQSD 824
P P LE EE K+ + +IG Y+ R D+L+ ++ A+
Sbjct: 1508 SAPGQPGLYIDQQELELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILF 1567
Query: 825 PRETHLTAVKRILKYLKGTTNLGLMYRKTSEY----TLSGFCDADFAGDRVERKSTSGSC 880
P + L +++++ T + L++ K+ L DA + G++ KS G+
Sbjct: 1568 PSKQVLDMTYELIQFIWNTRDKQLIWHKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNI 1626
Query: 881 HFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIWMKNHLEDYGLSLKKVPI---- 936
+ L ++ S + + ST EAE ++++ + N+L L K PI
Sbjct: 1627 YLLNGKVIGGKSTKASLTCTSTTEAE----IHAISESVPLLNNLSYLIQELDKKPITKGL 1682
Query: 937 YCDNTAAIS-LSKNPILHSRAKHIEVKYHYIRDHVQKGTLSLEYVDTDHQWADIFTKPL 994
D+ + IS + N R + K +RD V L + Y++T AD+ TKPL
Sbjct: 1683 LTDSKSTISIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPL 1741
Score = 110 bits (276), Expect = 1e-23
Identities = 99/382 (25%), Positives = 169/382 (43%), Gaps = 24/382 (6%)
Query: 47 VLLVEGLFHNLLSISQIANKGYDVIFNQTGCKAVSQTNGSVL--------FSGKRKNYIY 98
VL + ++LLS++++A F + + +++G+VL F K Y+
Sbjct: 516 VLHTPNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLL 572
Query: 99 KIKSSELLSQKVKCLMSVNDEQWIWLRR-LGHASLRKISQLSKLNLIRGLPR--LKYSS- 154
S V S + ++ R L HA+ + I K N I + +SS
Sbjct: 573 PSNISVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSA 632
Query: 155 -EALCEACQKGKFTK-KPFKAKNVV--STTRPLELLHIDLFGPVKTESIGGKKYGLVIVD 210
+ C C GK TK + K + ++ P + LH D+FGPV Y + D
Sbjct: 633 IDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTD 692
Query: 211 DYSRWTWVKFL--RHKDETHTIFTNFITQVQKEFQTSVITVRSDHGGEFENKAFEELFNS 268
+ +++ WV L R +D +FT + ++ +FQ SV+ ++ D G E+ N+ +
Sbjct: 693 ETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEK 752
Query: 269 QGISHNFSCPRTPQQNGVVERKNRTLQEMARTMMQESSMAKHLWAEAINTAYYIHNIISI 328
GI+ ++ + +GV ER NRTL + RT +Q S + HLW AI + + N ++
Sbjct: 753 NGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLA- 811
Query: 329 RPILEKTPYELCKGRQPDISYFHPFGSTCYMLNTKEQLGKFDSKALKCYFLGYSERSKGF 388
P +K+ + DIS PFG ++N K + + Y L S S G+
Sbjct: 812 SPKSKKSARQHAGLAGLDISTLLPFGQP-VIVNDHNPNSKIHPRGIPGYALHPSRNSYGY 870
Query: 389 RIY-NIIHQTVEESIQIRFDGK 409
IY + +TV+ + + GK
Sbjct: 871 IIYLPSLKKTVDTTNYVILQGK 892
>YJZ7_YEAST (P47098) Transposon Ty1 protein B
Length = 1755
Score = 118 bits (295), Expect = 9e-26
Identities = 146/599 (24%), Positives = 267/599 (44%), Gaps = 69/599 (11%)
Query: 432 NQPKNSSEDVAPEAEASEAAPTTSDQL-----QKKKRIAVSHPEELIIGNKDAPVRTRSM 486
N K S ED E + S T + + KKRI + + + K P+RT
Sbjct: 1176 NSKKRSLEDNETEIKVSRDTWNTKNMRSLEPPRSKKRIHLIAAVKAVKSIK--PIRTTLR 1233
Query: 487 LKPSEETLLSLKGLVSLIEP--KSVDEALEDKGWILGMQEELDQFTKNDVWTLMSKPKGF 544
+ +K IE K V++ L+ K W + + + + ++ PK
Sbjct: 1234 YDEAITYNKDIKEKEKYIEAYHKEVNQLLKMKTW-----DTDEYYDRKEI-----DPK-- 1281
Query: 545 HVIGTKWVFRNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETFSPVARLEAIRLLISFSV 604
VI + ++F N+K + T +KAR VA+G Q T S A+ +S ++
Sbjct: 1282 RVINSMFIF----NKKRDGT-HKARFVARGDIQHPDTYDTGMQSNTVHHYALMTSLSLAL 1336
Query: 605 NHNITLHQMDVKSAFLNGYISEEVYVKQPPGFEDDKYPDHVYKLKKSLYGLKQAPRAWYE 664
++N + Q+D+ SA+L I EE+Y++ PP + D + +LKKS YGLKQ+ WYE
Sbjct: 1337 DNNYYITQLDISSAYLYADIKEELYIRPPPHLGMN---DKLIRLKKSHYGLKQSGANWYE 1393
Query: 665 RLSSFLLQN---EFVRGKGDNTLFCITYKNDILIVQIYVDDIIFGSANPSLCKEFSKLMQ 721
+ S+L++ E VRG + +KN + + ++VDD+I S + + K+ ++
Sbjct: 1394 TIKSYLIKQCGMEEVRG------WSCVFKNSQVTICLFVDDMILFSKDLNANKKIITTLK 1447
Query: 722 AEFEMSMM------GELKY-FLGIQID-QRPGVTYIHQKKYTLELLKKFNM---SDCNIS 770
+++ ++ E++Y LG++I QR + + E + K N+
Sbjct: 1448 KQYDTKIINLGESDNEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKL 1507
Query: 771 KTPMHPTCILEKEEV---SSKVCQKLY--RGMIGSLLYLTAS-RPDILFSVHLCARFQSD 824
P P ++++E+ + +K++ + +IG Y+ R D+L+ ++ A+
Sbjct: 1508 SAPGQPGLYIDQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILF 1567
Query: 825 PRETHLTAVKRILKYLKGTTNLGLMYRKTS----EYTLSGFCDADFAGDRVERKSTSGSC 880
P L +++++ T + L++ K + L DA + G++ KS G+
Sbjct: 1568 PSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNI 1626
Query: 881 HFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIWMKNHLEDYGLSLKKVPI---- 936
L ++ S + + ST EAE ++++ + N+L L K PI
Sbjct: 1627 FLLNGKVIGGKSTKASLTCTSTTEAE----IHAISESVPLLNNLSYLIQELNKKPIIKGL 1682
Query: 937 YCDNTAAISLSKNPILHS-RAKHIEVKYHYIRDHVQKGTLSLEYVDTDHQWADIFTKPL 994
D+ + IS+ K+ R + K +RD V L + Y++T AD+ TKPL
Sbjct: 1683 LTDSRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPL 1741
Score = 110 bits (276), Expect = 1e-23
Identities = 99/382 (25%), Positives = 169/382 (43%), Gaps = 24/382 (6%)
Query: 47 VLLVEGLFHNLLSISQIANKGYDVIFNQTGCKAVSQTNGSVL--------FSGKRKNYIY 98
VL + ++LLS++++A F + + +++G+VL F K Y+
Sbjct: 516 VLHTPNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVQYGDFYWVSKRYLL 572
Query: 99 KIKSSELLSQKVKCLMSVNDEQWIWLRR-LGHASLRKISQLSKLNLIRGLPR--LKYSS- 154
S V S + ++ R L HA+ + I K N I + +SS
Sbjct: 573 PSNISVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSA 632
Query: 155 -EALCEACQKGKFTK-KPFKAKNVV--STTRPLELLHIDLFGPVKTESIGGKKYGLVIVD 210
+ C C GK TK + K + ++ P + LH D+FGPV Y + D
Sbjct: 633 IDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTD 692
Query: 211 DYSRWTWVKFL--RHKDETHTIFTNFITQVQKEFQTSVITVRSDHGGEFENKAFEELFNS 268
+ +++ WV L R +D +FT + ++ +FQ SV+ ++ D G E+ N+ +
Sbjct: 693 ETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEK 752
Query: 269 QGISHNFSCPRTPQQNGVVERKNRTLQEMARTMMQESSMAKHLWAEAINTAYYIHNIISI 328
GI+ ++ + +GV ER NRTL + RT +Q S + HLW AI + + N ++
Sbjct: 753 NGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLA- 811
Query: 329 RPILEKTPYELCKGRQPDISYFHPFGSTCYMLNTKEQLGKFDSKALKCYFLGYSERSKGF 388
P +K+ + DIS PFG ++N K + + Y L S S G+
Sbjct: 812 SPKSKKSARQHAGLAGLDISTLLPFGQP-VIVNDHNPNSKIHPRGIPGYALHPSRNSYGY 870
Query: 389 RIY-NIIHQTVEESIQIRFDGK 409
IY + +TV+ + + GK
Sbjct: 871 IIYLPSLKKTVDTTNYVILQGK 892
>YMU0_YEAST (Q04670) Transposon Ty1 protein B
Length = 1328
Score = 117 bits (294), Expect = 1e-25
Identities = 151/609 (24%), Positives = 264/609 (42%), Gaps = 89/609 (14%)
Query: 432 NQPKNSSEDVAPEAEASEAAPTTSDQL-----QKKKRIAVSHPEELIIGNKDAPVRTRSM 486
N K S ED E + S T + + KKRI + A V+
Sbjct: 749 NSKKRSLEDNETEIKVSRDTWNTKNMRSLEPPRSKKRIHLI-----------AAVKAVKS 797
Query: 487 LKPSEETLLSLKGLVSLIEPKSVDEALEDKGWILGMQEELDQFTKNDVWTLMS------- 539
+KP TL + + + K E + +I +E++Q K W
Sbjct: 798 IKPIRTTLRYDEAITYNKDIK------EKEKYIQAYHKEVNQLLKMKTWDTDRYYDRKEI 851
Query: 540 KPKGFHVIGTKWVFRNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETFSPVARLE----- 594
PK VI + ++F N K + T +KAR VA+G I + +T+ P +
Sbjct: 852 DPK--RVINSMFIF----NRKRDGT-HKARFVARG-----DIQHPDTYDPGMQSNTVHHY 899
Query: 595 AIRLLISFSVNHNITLHQMDVKSAFLNGYISEEVYVKQPPGFEDDKYPDHVYKLKKSLYG 654
A+ +S ++++N + Q+D+ SA+L I EE+Y++ PP + D + +LKKSLYG
Sbjct: 900 ALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHLGMN---DKLIRLKKSLYG 956
Query: 655 LKQAPRAWYERLSSFLLQN---EFVRGKGDNTLFCITYKNDILIVQIYVDDIIFGSANPS 711
LKQ+ WYE + S+L++ E VRG + +KN + + ++VDD+I S + +
Sbjct: 957 LKQSGANWYETIKSYLIKQCGMEEVRG------WSCVFKNSQVTICLFVDDMILFSKDLN 1010
Query: 712 LCKEFSKLMQAEFEMSMM------GELKY-FLGIQID-QRPGVTYIHQKKYTLELLKKFN 763
K+ ++ +++ ++ E++Y LG++I QR + + E + K N
Sbjct: 1011 ANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLN 1070
Query: 764 M---SDCNISKTPMHPTCI-----LEKEEVSSKVCQKLYRGMIGSLLYLTAS-RPDILFS 814
+ P P LE EE K+ + +IG Y+ R D+L+
Sbjct: 1071 VPLNPKGRKLSAPGQPGLYIDQQELELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYY 1130
Query: 815 VHLCARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTSEY----TLSGFCDADFAGDR 870
++ A+ P + L +++++ T + L++ K+ L DA + G++
Sbjct: 1131 INTLAQHILFPSKQVLDMTYELIQFIWNTRDKQLIWHKSKPVKPTNKLVVISDASY-GNQ 1189
Query: 871 VERKSTSGSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIWMKNHLEDYGLS 930
KS G+ + L ++ S + + ST EAE ++++ + N+L
Sbjct: 1190 PYYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAE----IHAISESVPLLNNLSHLVQE 1245
Query: 931 LKKVPI----YCDNTAAIS-LSKNPILHSRAKHIEVKYHYIRDHVQKGTLSLEYVDTDHQ 985
L K PI D+ + IS + N R + K +RD V L + Y++T
Sbjct: 1246 LNKKPITKGLLTDSKSTISIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKN 1305
Query: 986 WADIFTKPL 994
AD+ TKPL
Sbjct: 1306 IADVMTKPL 1314
Score = 110 bits (276), Expect = 1e-23
Identities = 99/382 (25%), Positives = 169/382 (43%), Gaps = 24/382 (6%)
Query: 47 VLLVEGLFHNLLSISQIANKGYDVIFNQTGCKAVSQTNGSVL--------FSGKRKNYIY 98
VL + ++LLS++++A F + + +++G+VL F K Y+
Sbjct: 89 VLHTPNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLL 145
Query: 99 KIKSSELLSQKVKCLMSVNDEQWIWLRR-LGHASLRKISQLSKLNLIRGLPR--LKYSS- 154
S V S + ++ R L HA+ + I K N I + +SS
Sbjct: 146 PSNISVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSA 205
Query: 155 -EALCEACQKGKFTK-KPFKAKNVV--STTRPLELLHIDLFGPVKTESIGGKKYGLVIVD 210
+ C C GK TK + K + ++ P + LH D+FGPV Y + D
Sbjct: 206 IDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTD 265
Query: 211 DYSRWTWVKFL--RHKDETHTIFTNFITQVQKEFQTSVITVRSDHGGEFENKAFEELFNS 268
+ +++ WV L R +D +FT + ++ +FQ SV+ ++ D G E+ N+ +
Sbjct: 266 ETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEK 325
Query: 269 QGISHNFSCPRTPQQNGVVERKNRTLQEMARTMMQESSMAKHLWAEAINTAYYIHNIISI 328
GI+ ++ + +GV ER NRTL + RT +Q S + HLW AI + + N ++
Sbjct: 326 NGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLA- 384
Query: 329 RPILEKTPYELCKGRQPDISYFHPFGSTCYMLNTKEQLGKFDSKALKCYFLGYSERSKGF 388
P +K+ + DIS PFG ++N K + + Y L S S G+
Sbjct: 385 SPKSKKSARQHAGLAGLDISTLLPFGQP-VIVNDHNPNSKIHPRGIPGYALHPSRNSYGY 443
Query: 389 RIY-NIIHQTVEESIQIRFDGK 409
IY + +TV+ + + GK
Sbjct: 444 IIYLPSLKKTVDTTNYVILQGK 465
>YMT5_YEAST (Q04214) Transposon Ty1 protein B
Length = 1328
Score = 114 bits (286), Expect = 1e-24
Identities = 148/604 (24%), Positives = 259/604 (42%), Gaps = 79/604 (13%)
Query: 432 NQPKNSSEDVAPEAEASEAAPTTSDQL-----QKKKRIAVSHPEELIIGNKDAPVRTRSM 486
N K S ED E + S T + + KKRI + A V+
Sbjct: 749 NSKKRSLEDNETEIKVSRDTWNTKNMRSLEPPRSKKRIHLI-----------AAVKAVKS 797
Query: 487 LKPSEETLLSLKGLVSLIEPKSVDEALEDKGWILGMQEELDQFTKNDVWTLMS------- 539
+KP TL + + + K ++ +E +E++Q K W
Sbjct: 798 IKPIRTTLRYDEAITYNKDIKEKEKYIE------AYHKEVNQLLKMKTWDTDKYYDRKEI 851
Query: 540 KPKGFHVIGTKWVFRNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETFSPVARLEAIRLL 599
PK VI + ++F N K + T +KAR VA+G Q + S A+
Sbjct: 852 DPK--RVINSMFIF----NRKRDGT-HKARFVARGDIQHPDTYDSGMQSNTVHHYALMTS 904
Query: 600 ISFSVNHNITLHQMDVKSAFLNGYISEEVYVKQPPGFEDDKYPDHVYKLKKSLYGLKQAP 659
+S ++++N + Q+D+ SA+L I EE+Y++ PP + D + +LKKSLYGLKQ+
Sbjct: 905 LSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHLGMN---DKLIRLKKSLYGLKQSG 961
Query: 660 RAWYERLSSFLLQN---EFVRGKGDNTLFCITYKNDILIVQIYVDDIIFGSANPSLCKEF 716
WYE + S+L++ E VRG + ++N + + ++VDD++ S N + K
Sbjct: 962 ANWYETIKSYLIKQCGMEEVRG------WSCVFENSQVTICLFVDDMVLFSKNLNSNKRI 1015
Query: 717 SKLMQAEFEMSMMG------ELKY-FLGIQID-QRPGVTYIHQKKYTLELLKKFNM---S 765
++ +++ ++ E++Y LG++I QR + + E + K N+
Sbjct: 1016 IDKLKMQYDTKIINLGESDEEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNP 1075
Query: 766 DCNISKTPMHPTCI-----LEKEEVSSKVCQKLYRGMIGSLLYLTAS-RPDILFSVHLCA 819
P P LE EE K+ + +IG Y+ R D+L+ ++ A
Sbjct: 1076 KGRKLSAPGQPGLYIDQQELELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLA 1135
Query: 820 RFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTSEY----TLSGFCDADFAGDRVERKS 875
+ P + L +++++ T + L++ K+ L DA + G++ KS
Sbjct: 1136 QHILFPSKQVLDMTYELIQFIWNTRDKQLIWHKSKPVKPTNKLVVISDASY-GNQPYYKS 1194
Query: 876 TSGSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIWMKNHLEDYGLSLKKVP 935
G+ + L ++ S + + ST EAE ++++ + N+L L K P
Sbjct: 1195 QIGNIYLLNGKVIGGKSTKASLTCTSTTEAE----IHAISESVPLLNNLSYLIQELDKKP 1250
Query: 936 I----YCDNTAAIS-LSKNPILHSRAKHIEVKYHYIRDHVQKGTLSLEYVDTDHQWADIF 990
I D+ + IS + N R + K +RD V L + Y++T AD+
Sbjct: 1251 ITKGLLTDSKSTISIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVM 1310
Query: 991 TKPL 994
TKPL
Sbjct: 1311 TKPL 1314
Score = 110 bits (276), Expect = 1e-23
Identities = 99/382 (25%), Positives = 169/382 (43%), Gaps = 24/382 (6%)
Query: 47 VLLVEGLFHNLLSISQIANKGYDVIFNQTGCKAVSQTNGSVL--------FSGKRKNYIY 98
VL + ++LLS++++A F + + +++G+VL F K Y+
Sbjct: 89 VLHTPNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLL 145
Query: 99 KIKSSELLSQKVKCLMSVNDEQWIWLRR-LGHASLRKISQLSKLNLIRGLPR--LKYSS- 154
S V S + ++ R L HA+ + I K N I + +SS
Sbjct: 146 PSNISVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSA 205
Query: 155 -EALCEACQKGKFTK-KPFKAKNVV--STTRPLELLHIDLFGPVKTESIGGKKYGLVIVD 210
+ C C GK TK + K + ++ P + LH D+FGPV Y + D
Sbjct: 206 IDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTD 265
Query: 211 DYSRWTWVKFL--RHKDETHTIFTNFITQVQKEFQTSVITVRSDHGGEFENKAFEELFNS 268
+ +++ WV L R +D +FT + ++ +FQ SV+ ++ D G E+ N+ +
Sbjct: 266 ETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEK 325
Query: 269 QGISHNFSCPRTPQQNGVVERKNRTLQEMARTMMQESSMAKHLWAEAINTAYYIHNIISI 328
GI+ ++ + +GV ER NRTL + RT +Q S + HLW AI + + N ++
Sbjct: 326 NGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLA- 384
Query: 329 RPILEKTPYELCKGRQPDISYFHPFGSTCYMLNTKEQLGKFDSKALKCYFLGYSERSKGF 388
P +K+ + DIS PFG ++N K + + Y L S S G+
Sbjct: 385 SPKSKKSARQHAGLAGLDISTLLPFGQP-VIVNDHNPNSKIHPRGIPGYALHPSRNSYGY 443
Query: 389 RIY-NIIHQTVEESIQIRFDGK 409
IY + +TV+ + + GK
Sbjct: 444 IIYLPSLKKTVDTTNYVILQGK 465
>YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein
Length = 1803
Score = 110 bits (275), Expect = 2e-23
Identities = 116/488 (23%), Positives = 214/488 (43%), Gaps = 47/488 (9%)
Query: 546 VIGTKWVFRNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETFSPVARLEAIRLLISFSVN 605
++ T +F K N KAR+V +G +Q Y+ + I++ + + N
Sbjct: 1322 IVPTNTIFTKKRNGI-----YKARIVCRGDTQSPDT-YSVITTESLNHNHIKIFLMIANN 1375
Query: 606 HNITLHQMDVKSAFLNGYISEEVYVKQPPGFEDDKYPDHVYKLKKSLYGLKQAPRAWYER 665
N+ + +D+ AFL + EE+Y+ P D + V KL K+LYGLKQ+P+ W +
Sbjct: 1376 RNMFMKTLDINHAFLYAKLEEEIYIPHP---HDRRC---VVKLNKALYGLKQSPKEWNDH 1429
Query: 666 LSSFLLQNEFVRGKGDNTLFCITYKND--ILIVQIYVDDIIFGSANPSLCKEFSKLMQAE 723
L +L N G DN+ Y+ + L++ +YVDD + ++N EF +++
Sbjct: 1430 LRQYL--NGI--GLKDNSYTPGLYQTEDKNLMIAVYVDDCVIAASNEQRLDEFINKLKSN 1485
Query: 724 FEMSMMGEL------KYFLGIQI--DQRPGVTYIHQKKYTLELLKKFNMSDCNISKT--- 772
FE+ + G L LG+ + ++R G + K + + KK+N I K+
Sbjct: 1486 FELKITGTLIDDVLDTDILGMDLVYNKRLGTIDLTLKSFINRMDKKYNEELKKIRKSSIP 1545
Query: 773 --------PMHPTCILEKEEVSSKVCQKLYRGMIGSLLYLT-ASRPDILFSVHLCARFQS 823
P + +EE V + + ++G L Y+ R DI F+V AR +
Sbjct: 1546 HMSTYKIDPKKDVLQMSEEEFRQGVLK--LQQLLGELNYVRHKCRYDIEFAVKKVARLVN 1603
Query: 824 DPRETHLTAVKRILKYLKGTTNLGLMYRK--TSEYTLSGFCDADFAGDRVERKSTSGSCH 881
P E + +I++YL ++G+ Y + + + DA G + +S G
Sbjct: 1604 YPHERVFYMIYKIIQYLVRYKDIGIHYDRDCNKDKKVIAITDAS-VGSEYDAQSRIGVIL 1662
Query: 882 FLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIWMKNHLEDYGL-SLKKVPIYCDN 940
+ G N+ S + +S+ EAE + + +K L++ G + + D+
Sbjct: 1663 WYGMNIFNVYSNKSTNRCVSSTEAELHAIYEGYADSETLKVTLKELGEGDNNDIVMITDS 1722
Query: 941 TAAISLSKNPILHSRAKHIEVKYHYIRDHVQKGTLSLEYVDTDHQWADIFTKPLAED--- 997
AI + K +K I++ +++ ++ L + AD+ TKP++
Sbjct: 1723 KPAIQGLNRSYQQPKEKFTWIKTEIIKEKIKEKSIKLLKITGKGNIADLLTKPVSASDFK 1782
Query: 998 RFLFILEN 1005
RF+ +L+N
Sbjct: 1783 RFIQVLKN 1790
Score = 91.3 bits (225), Expect = 1e-17
Identities = 75/276 (27%), Positives = 123/276 (44%), Gaps = 13/276 (4%)
Query: 125 RRLGHASLRKISQLSKLNLIR-GLPRLKYSSEALCEACQKGKFTKKPF---KAKNVVSTT 180
+R+GH +++I K N L +K +E C+ C+ K TK+ N +
Sbjct: 563 KRMGHTGIQQIENSIKHNHYEESLDLIKEPNEFWCQTCKISKATKRNHYTGSMNNHSTDH 622
Query: 181 RPLELLHIDLFGPVKTESIGGKKYGLVIVDDYSRW--TWVKFLRHKDETHTIFTNFITQV 238
P +D+FGPV + + K+Y L++VD+ +R+ T F ++ + I V
Sbjct: 623 EPGSSWCMDIFGPVSSSNADTKRYMLIMVDNNTRYCMTSTHFNKNAETILAQVRKNIQYV 682
Query: 239 QKEFQTSVITVRSDHGGEFENKAFEELFNSQGISHNFSCPRTPQQNGVVERKNRTLQEMA 298
+ +F V + SD G EF N EE F S+GI H + + NG ER RT+ A
Sbjct: 683 ETQFDRKVREINSDRGTEFTNDQIEEYFISKGIHHILTSTQDHAANGRAERYIRTIITDA 742
Query: 299 RTMMQESSMAKHLWAEAINTAYYIHNIISIRPILEKTPYELCKGRQP---DISYFHPFGS 355
T++++S++ W A+ +A I N + + K P + RQP + F PFG
Sbjct: 743 TTLLRQSNLRVKFWEYAVTSATNIRNYLEHKS-TGKLPLKAI-SRQPVTVRLMSFLPFGE 800
Query: 356 TCYMLNTKEQLGKFDSKALKCYFLGYSERSKGFRIY 391
+ N + K L L S G++ +
Sbjct: 801 KGIIWNHNHK--KLKPSGLPSIILCKDPNSYGYKFF 834
>M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820
(ORF170)
Length = 170
Score = 102 bits (255), Expect = 4e-21
Identities = 48/97 (49%), Positives = 66/97 (67%)
Query: 505 EPKSVDEALEDKGWILGMQEELDQFTKNDVWTLMSKPKGFHVIGTKWVFRNKLNEKGEVT 564
EPKSV AL+D GW MQEELD ++N W L+ P +++G KWVF+ KL+ G +
Sbjct: 27 EPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLD 86
Query: 565 RNKARLVAQGYSQQEGIDYTETFSPVARLEAIRLLIS 601
R KARLVA+G+ Q+EGI + ET+SPV R IR +++
Sbjct: 87 RLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILN 123
>M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240
(ORF111a)
Length = 111
Score = 68.2 bits (165), Expect = 1e-10
Identities = 42/108 (38%), Positives = 59/108 (53%), Gaps = 9/108 (8%)
Query: 802 LYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTSEYTLSGF 861
+YLT +RPD+ F+V+ ++F S R + AV ++L Y+KGT GL Y TS+ L F
Sbjct: 1 MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60
Query: 862 CDADFAGDRVERKSTSGSCH-----FLG----SNLVTWSSKRQNTIAL 900
D+D+A R+S +G C FLG S L +RQN AL
Sbjct: 61 ADSDWASCPDTRRSVTGFCSLVPLWFLGALRKSILSPGLLQRQNIEAL 108
>POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)]
Length = 886
Score = 62.0 bits (149), Expect = 8e-09
Identities = 62/260 (23%), Positives = 107/260 (40%), Gaps = 19/260 (7%)
Query: 91 GKRKNYIYKIKSSELLSQK---VKCLMSVNDEQWIWLRRLGHASLRKISQLSKLNLIRGL 147
G K Y Y ++ ++ + VK + +D Q I L+ A + + L K+ +
Sbjct: 577 GYPKQYTYFLEDGKVKVSRPEGVKIIPPQSDRQKIVLQAHNLAHTGREATLLKIANLYWW 636
Query: 148 PRLKYSSEALCEACQKGKFTKKPFKAKNVV----STTRPLELLHIDLFGPVKTESIGGKK 203
P ++ CQ+ T KA + +P + ID GP+ G
Sbjct: 637 PNMRKDVVKQLGRCQQCLITNASNKASGPILRPDRPQKPFDKFFIDYIGPLPPSQ--GYL 694
Query: 204 YGLVIVDDYSRWTWVKFLRHKDETHTIFT-NFITQVQKEFQTSVITVRSDHGGEFENKAF 262
Y LV+VD + +TW+ + + T+ + N +T + + SD G F + F
Sbjct: 695 YVLVVVDGMTGFTWLYPTKAPSTSATVKSLNVLTSI-----AIPKVIHSDQGAAFTSSTF 749
Query: 263 EELFNSQGISHNFSCPRTPQQNGVVERKNRTLQEMARTMMQESSMAKHLWAEAINTAYYI 322
E +GI FS P PQ VERKN ++ + ++ + + A +
Sbjct: 750 AEWAKERGIHLEFSTPYHPQSGSKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLA--L 807
Query: 323 HNIISIRPILEKTPYELCKG 342
+N S P+L+ TP++L G
Sbjct: 808 NNTYS--PVLKYTPHQLLFG 825
>POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1189
Score = 60.8 bits (146), Expect = 2e-08
Identities = 63/246 (25%), Positives = 101/246 (40%), Gaps = 16/246 (6%)
Query: 105 LLSQKVKCLMSVNDEQWIWLRRLGHASLRKISQLSKLNLIRGLPRLKYSSEALCEACQKG 164
+L QK M W LG+ L+ + + + + R ++ + A C+ CQ+
Sbjct: 831 VLPQKEALAMIQQMHAWT---HLGNRKLKLLIEKTDFLIPRASTLIEQVTSA-CKVCQQV 886
Query: 165 KFTKKPFKAKNVVSTTRPLELLHIDLFGPVKTESIGGKKYGLVIVDDYSRWTWVKFLRHK 224
A RP ID F VK G KY LV VD +S W F +
Sbjct: 887 NAGATRVPAGKRTRGNRPGVYWEID-FTEVKPH-YAGYKYLLVFVDTFSGWVEA-FPTRQ 943
Query: 225 DETHTIFTNFITQVQKEFQTSVITVRSDHGGEFENKAFEELFNSQGISHNFSCPRTPQQN 284
+ H + + ++ F + + SD+G F ++ + L GI+ C PQ +
Sbjct: 944 ETAHIVAKKILEEIFPRFGLPKV-IGSDNGPAFVSQVSQGLARILGINWKLHCAYRPQSS 1002
Query: 285 GVVERKNRTLQEMARTMMQESSMA--KHLWAEAINTAYYIHNIISIRPILEKTPYELCKG 342
G VER NRT++E + E+ + + L + A+ A N + TPYE+ G
Sbjct: 1003 GQVERMNRTIKETLTKLTLETGLKDWRRLLSLALLRARNTPNRFGL------TPYEILYG 1056
Query: 343 RQPDIS 348
P +S
Sbjct: 1057 GPPPLS 1062
>POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1196
Score = 57.8 bits (138), Expect = 1e-07
Identities = 61/234 (26%), Positives = 96/234 (40%), Gaps = 16/234 (6%)
Query: 124 LRRLGHASLRKISQL-----SKLNLIRGLPRLKYSSEALCEACQKGKFTKKPFKAKNVVS 178
L RL H +K+ L S ++ L+Y +++ C C + +K A V
Sbjct: 847 LHRLTHLGYQKMKALLDRGESPYYMLNRDKTLQYVADS-CTVCAQVNASKAKIGAGVRVR 905
Query: 179 TTRPLELLHIDLFGPVKTESIGGKKYGLVIVDDYSRWTWVKFLRHKDETHTIFTNFITQV 238
RP ID F VK + G KY LV VD +S W F ++ + + ++
Sbjct: 906 GHRPGSHWEID-FTEVKP-GLYGYKYLLVFVDTFSGWVEA-FPTKRETARVVSKKLLEEI 962
Query: 239 QKEFQTSVITVRSDHGGEFENKAFEELFNSQGISHNFSCPRTPQQNGVVERKNRTLQEMA 298
F + + SD+G F ++ + + + GI C PQ +G VER NRT++E
Sbjct: 963 FPRFGMPQV-LGSDNGPAFTSQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETL 1021
Query: 299 RTMMQESSMAKHLWAEAINTAYY-IHNIISIRPILEKTPYELCKGRQPDISYFH 351
+ + W + A Y N + TPYE+ G P + FH
Sbjct: 1022 TKLTLAAGTRD--WVLLLPLALYRARNTPGPHGL---TPYEILYGAPPPLVNFH 1070
>POL_MLVFF (P26809) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 57.4 bits (137), Expect = 2e-07
Identities = 64/235 (27%), Positives = 99/235 (41%), Gaps = 18/235 (7%)
Query: 123 WLRRLGHASLRKISQLSKLN-----LIRGLPRLKYSSEALCEACQKGKFTKKPFKAKNVV 177
+L +L H S K L + N ++ LK +E C+AC + +K K V
Sbjct: 851 FLHQLTHLSFSKTKALLERNYCPYYMLNRDRTLKDITET-CQACAQVNASKSAVKQGTRV 909
Query: 178 STTRPLELLHIDLFGPVKTESIGGKKYGLVIVDDYSRWTWVKFLRHKDETHTIFTN-FIT 236
RP ID F VK + G KY LV +D +S W V+ K ET + T +
Sbjct: 910 RGHRPGTHWEID-FTEVKP-GLYGYKYLLVFIDTFSGW--VEAFPTKKETAKVVTKKLLE 965
Query: 237 QVQKEFQTSVITVRSDHGGEFENKAFEELFNSQGISHNFSCPRTPQQNGVVERKNRTLQE 296
++ F + + +D+G F +K + + + G+ C PQ +G VER NRT++E
Sbjct: 966 EIFPRFGMPQV-LGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKE 1024
Query: 297 MARTMMQESSMAKHLWAEAINTAYY-IHNIISIRPILEKTPYELCKGRQPDISYF 350
+ + W + A Y N + TPYE+ G P + F
Sbjct: 1025 TLTKLTLATGSRD--WVLLLPLALYRARNTPGPHGL---TPYEILYGAPPPLVNF 1074
>POL_MLVRK (P31795) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] (Fragment)
Length = 581
Score = 57.0 bits (136), Expect = 3e-07
Identities = 65/235 (27%), Positives = 98/235 (41%), Gaps = 18/235 (7%)
Query: 124 LRRLGHASLRKISQL-----SKLNLIRGLPRLKYSSEALCEACQKGKFTKKPFKAKNVVS 178
L RL H +K+ L S ++ L+Y +++ C C + +K A V
Sbjct: 232 LHRLTHLGYQKMKALLDRGESPYYMLNRDKTLQYVADS-CTVCAQVNASKAKIGAGVRVR 290
Query: 179 TTRPLELLHIDLFGPVKTESIGGKKYGLVIVDDYSRWTWVKFLRHKDETHTIFTN-FITQ 237
RP ID F VK + G KY LV VD +S W V+ K ET I T + +
Sbjct: 291 GHRPGTHWEID-FTEVKP-GLYGYKYLLVFVDTFSGW--VEAFPTKHETAKIVTKKLLEE 346
Query: 238 VQKEFQTSVITVRSDHGGEFENKAFEELFNSQGISHNFSCPRTPQQNGVVERKNRTLQEM 297
+ F + + +D+G F ++ + + GI C PQ +G VER NRT++E
Sbjct: 347 IFPRFGMPQV-LGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKET 405
Query: 298 ARTMMQESSMAKHLWAEAINTAYY-IHNIISIRPILEKTPYELCKGRQPDISYFH 351
+ + W + A Y N + TPYE+ G P + FH
Sbjct: 406 LTKLTLATGTRD--WVLLLPLALYRARNTPGPHGL---TPYEILYGAPPPLVNFH 455
>POL_MLVRD (P11227) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1196
Score = 57.0 bits (136), Expect = 3e-07
Identities = 65/235 (27%), Positives = 98/235 (41%), Gaps = 18/235 (7%)
Query: 124 LRRLGHASLRKISQL-----SKLNLIRGLPRLKYSSEALCEACQKGKFTKKPFKAKNVVS 178
L RL H +K+ L S ++ L+Y +++ C C + +K A V
Sbjct: 847 LHRLTHLGYQKMKALLDRGESPYYMLNRDKTLQYVADS-CTVCAQVNASKAKIGAGVRVR 905
Query: 179 TTRPLELLHIDLFGPVKTESIGGKKYGLVIVDDYSRWTWVKFLRHKDETHTIFTN-FITQ 237
RP ID F VK + G KY LV VD +S W V+ K ET I T + +
Sbjct: 906 GHRPGTHWEID-FTEVKP-GLYGYKYLLVFVDTFSGW--VEAFPTKHETAKIVTKKLLEE 961
Query: 238 VQKEFQTSVITVRSDHGGEFENKAFEELFNSQGISHNFSCPRTPQQNGVVERKNRTLQEM 297
+ F + + +D+G F ++ + + GI C PQ +G VER NRT++E
Sbjct: 962 IFPRFGMPQV-LGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKET 1020
Query: 298 ARTMMQESSMAKHLWAEAINTAYY-IHNIISIRPILEKTPYELCKGRQPDISYFH 351
+ + W + A Y N + TPYE+ G P + FH
Sbjct: 1021 LTKLTLATGTRD--WVLLLPLALYRARNTPGPHGL---TPYEILYGAPPPLVNFH 1070
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.319 0.135 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,699,846
Number of Sequences: 164201
Number of extensions: 5060410
Number of successful extensions: 12836
Number of sequences better than 10.0: 124
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 12622
Number of HSP's gapped (non-prelim): 158
length of query: 1017
length of database: 59,974,054
effective HSP length: 120
effective length of query: 897
effective length of database: 40,269,934
effective search space: 36122130798
effective search space used: 36122130798
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 71 (32.0 bits)
Lotus: description of TM0166.5