BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0166.12
(1518 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 194 2e-48
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 192 6e-48
M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810... 150 2e-35
YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B) 114 2e-24
YMD9_YEAST (Q03434) Transposon Ty1 protein B 99 1e-19
YMT5_YEAST (Q04214) Transposon Ty1 protein B 98 2e-19
YJZ7_YEAST (P47098) Transposon Ty1 protein B 98 2e-19
YMU0_YEAST (Q04670) Transposon Ty1 protein B 97 3e-19
YME4_YEAST (Q04711) Transposon Ty1 protein B 97 3e-19
YJZ9_YEAST (P47100) Transposon Ty1 protein B 97 3e-19
YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein 82 1e-14
YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein 74 4e-12
M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240... 63 5e-09
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 58 2e-07
POL_IPHA (P04026) Putative Pol polyprotein [Contains: Integrase ... 57 3e-07
POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23... 57 5e-07
POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse transcript... 54 3e-06
POL_MMTVB (P03365) Pol polyprotein [Contains: Reverse transcript... 53 6e-06
POL_JSRV (P31623) Pol polyprotein [Contains: Reverse transcripta... 53 6e-06
POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.2... 52 1e-05
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 194 bits (492), Expect = 2e-48
Identities = 171/640 (26%), Positives = 280/640 (43%), Gaps = 46/640 (7%)
Query: 481 RSTTWKCHHCGKHGHIRPYCYRLYGTPQHWR--TTQMHTSTNPKIREWKPKNIVTALVAY 538
+S C++C + GH + C P+ + T+ N N+V +
Sbjct: 226 KSRVRNCYNCNQPGHFKRDC----PNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFINEE 281
Query: 539 TSLRASS--KEDWYFDSGCSRHMNSVKMYLDNIKPHSTSFVTFGDGAKGRIKGSEKIVS- 595
S + +W D+ S H V+ V G+ + +I G I
Sbjct: 282 EECMHLSGPESEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIK 341
Query: 596 ---GGSPNLSNVLLVEGLTANLISISQLCDLDLNVSSNKAGCTVTNENEEVVMTGVRSKD 652
G + L +V V L NLIS L D D S + V+ GV ++
Sbjct: 342 TNVGCTLVLKDVRHVPDLRMNLISGIAL-DRDGYESYFANQKWRLTKGSLVIAKGV-ARG 399
Query: 653 NCYMWSPQNKAMSSMCLVSMEDEAK--LWHQK*GHLNPTSMKKVISKEAIRGIPRLKIEE 710
Y N + L + +DE LWH++ GH++ ++ +++K+++ I K
Sbjct: 400 TLYR---TNAEICQGELNAAQDEISVDLWHKRMGHMSEKGLQ-ILAKKSL--ISYAKGTT 453
Query: 711 DKVCGECQIGKQTKTSHKKLTQIGTTRSLQLLHMDLMGPMHKESFGGKRYVFVCVDDFSR 770
K C C GKQ + S + ++ L L++ D+ GPM ES GG +Y +DD SR
Sbjct: 454 VKPCDYCLFGKQHRVSFQTSSE-RKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASR 512
Query: 771 FTWVNFLAEKSETFEVFRELSQQLQGEKGYGIVKIRSDHGKEFENGKFSEYCGNEGIKHE 830
WV L K + F+VF++ ++ E G + ++RSD+G E+ + +F EYC + GI+HE
Sbjct: 513 KLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHE 572
Query: 831 FSAPITPQQNGVVERKNRTLQESARVMLHAKKVPYHLWAEAINTACYIHYRVTIRSGTDS 890
+ P TPQ NGV ER NRT+ E R ML K+P W EA+ TACY+ R
Sbjct: 573 KTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFE 632
Query: 891 TLYELWKGKKPTVKYFYVFESRCYILTDREQRRKLDPKSDEGLFLGYSINSKAYRVFNSR 950
+W K+ + + VF R + +EQR KLD KS +F+GY YR+++
Sbjct: 633 IPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPV 692
Query: 951 TKTMMESINVV--------VDDMVSSL------NEINVDGDDNVPQIVDERPNDCDIRSD 996
K ++ S +VV DM + N + + N P + ++ + +
Sbjct: 693 KKKVIRSRDVVFRESEVRTAADMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQGE 752
Query: 997 TEPE--EEKEQ--ESSKEIVPSIRIQKMHLKENIIGNLNEGVVTRSRDIIANACFISKIE 1052
E E+ EQ E +E+ + ++ H + + + V +R E
Sbjct: 753 QPGEVIEQGEQLDEGVEEVEHPTQGEEQH--QPLRRSERPRVESRRYPSTEYVLISDDRE 810
Query: 1053 PKNIKEALT---DEYWINAMQEELSQFKRNEVWDLVPRPE 1089
P+++KE L+ + AMQEE+ ++N + LV P+
Sbjct: 811 PESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPK 850
Score = 185 bits (470), Expect = 7e-46
Identities = 102/298 (34%), Positives = 174/298 (58%), Gaps = 10/298 (3%)
Query: 1230 FVKSDGGKVMIAQIYVDDIVFGGMSDHMVEHFVRHMKSEFEMSLVGELNYFPGLQVKQMQ 1289
F + +I +YVDD++ G ++ + F+M +G G+++ + +
Sbjct: 994 FKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRER 1053
Query: 1290 DS--IFISQSKYAK*LVKKFGLEGSTHKRTPAATHIKLTKDESGTDVDQS------LYRS 1341
S +++SQ KY + ++++F ++ + TP A H+KL+K T V++ Y S
Sbjct: 1054 TSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSS 1113
Query: 1342 MICSLLY-LTASRPDIAFSIDVCARYQAAPKESHLIHVKRIIKYINGTTDYGTFYAHNSN 1400
+ SL+Y + +RPDIA ++ V +R+ P + H VK I++Y+ GTT + S+
Sbjct: 1114 AVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFG-GSD 1172
Query: 1401 SNLISYCDADWAGNADDGKSTSGGCFFLGNNLISWFNKKQNCVSLSTTEAEYIAAGSWCT 1460
L Y DAD AG+ D+ KS++G F ISW +K Q CV+LSTTEAEYIAA
Sbjct: 1173 PILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGK 1232
Query: 1461 QLLWMKHMLREYNVKQDVMTLYCENLSAINISKNPIQHSRTKHIDIRHHFIKDLVEEK 1518
+++W+K L+E + Q +YC++ SAI++SKN + H+RTKHID+R+H+I+++V+++
Sbjct: 1233 EMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDE 1290
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 192 bits (488), Expect = 6e-48
Identities = 166/674 (24%), Positives = 313/674 (45%), Gaps = 63/674 (9%)
Query: 381 LQEEVTVLKSKIEGMIKYVRMLNNGTDVFD-LILEIG*VAKDMTGLGYTEDPTTEENRKI 439
L E+ +KIE M K +L +D +I I ++++ L + ++ ++ KI
Sbjct: 124 LISELLAAGAKIEEMDKISHLLITLPSCYDGIITAIETLSEENLTLAFVKNRLLDQEIKI 183
Query: 440 SNKFIPAEKKTEFKMSNRMSQHVAQQGYQQIPYSYPPTQIMRSTTW---KCHHCGKHGHI 496
N KK + + + ++ P +I + + KCHHCG+ GHI
Sbjct: 184 KNDHNDTSKKVMNAIVHNNNNTYKNNLFKNRVTK--PKKIFKGNSKYKVKCHHCGREGHI 241
Query: 497 RPYCY---RLYGTPQHWRTTQMHTSTNPKIREWKPKNIVTALVAYTSLRASSKEDWYFDS 553
+ C+ R+ Q+ T+T+ I + V TS+ + + DS
Sbjct: 242 KKDCFHYKRILNNKNKENEKQVQTATSHGIA------FMVKEVNNTSVMDNC--GFVLDS 293
Query: 554 GCSRHM-NSVKMYLDNIK---PHSTSFVTFGDGAKGRIKGSEKIVSGGSPNLSNVLLVEG 609
G S H+ N +Y D+++ P + G+ +G ++ + L +VL +
Sbjct: 294 GASDHLINDESLYTDSVEVVPPLKIAVAKQGEFIYATKRGIVRLRNDHEITLEDVLFCKE 353
Query: 610 LTANLISISQLCDLDLNVSSNKAGCTVTNENEEVVMTGVRSKDNCYMWSPQNKAMSSMCL 669
NL+S+ +L + +++ +K+G T++ +N +V+ +N + + Q ++++
Sbjct: 354 AAGNLMSVKRLQEAGMSIEFDKSGVTIS-KNGLMVVKNSGMLNNVPVINFQAYSINA--- 409
Query: 670 VSMEDEAKLWHQK*GHLNPTSM-----KKVISKEAIRGIPRLKIEEDKVCGECQIGKQTK 724
++ +LWH++ GH++ + K + S +++ L E +C C GKQ +
Sbjct: 410 -KHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCE---ICEPCLNGKQAR 465
Query: 725 TSHKKLT-QIGTTRSLQLLHMDLMGPMHKESFGGKRYVFVCVDDFSRFTWVNFLAEKSET 783
K+L + R L ++H D+ GP+ + K Y + VD F+ + + KS+
Sbjct: 466 LPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDV 525
Query: 784 FEVFRELSQQLQGEKGYGIVKIRSDHGKEFENGKFSEYCGNEGIKHEFSAPITPQQNGVV 843
F +F++ + + +V + D+G+E+ + + ++C +GI + + P TPQ NGV
Sbjct: 526 FSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVS 585
Query: 844 ERKNRTLQESARVMLHAKKVPYHLWAEAINTACYIHYRVTIRSGTDS--TLYELWKGKKP 901
ER RT+ E AR M+ K+ W EA+ TA Y+ R+ R+ DS T YE+W KKP
Sbjct: 586 ERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKP 645
Query: 902 TVKYFYVFESRCYILTDREQRRKLDPKSDEGLFLGYSINSKAYRVFNSRTKTMMESINVV 961
+K+ VF + Y+ +Q K D KS + +F+GY N ++++++ + + + +VV
Sbjct: 646 YLKHLRVFGATVYVHIKNKQ-GKFDDKSFKSIFVGYEPN--GFKLWDAVNEKFIVARDVV 702
Query: 962 VDD--MVSS---------LNEINVDGDDNVPQ-----IVDERPN---DCD----IRSDTE 998
VD+ MV+S L + + N P I E PN +CD ++ E
Sbjct: 703 VDETNMVNSRAVKFETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECDNIQFLKDSKE 762
Query: 999 PEEEKEQESSKEIV 1012
E + S++I+
Sbjct: 763 SENKNFPNDSRKII 776
Score = 176 bits (447), Expect = 3e-43
Identities = 96/299 (32%), Positives = 171/299 (57%), Gaps = 8/299 (2%)
Query: 1225 IDKTLFVKSDGG--KVMIAQIYVDDIVFGGMSDHMVEHFVRHMKSEFEMSLVGELNYFPG 1282
+D+ +++ G + + +YVDD+V + +F R++ +F M+ + E+ +F G
Sbjct: 1066 VDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIG 1125
Query: 1283 LQVKQMQDSIFISQSKYAK*LVKKFGLEGSTHKRTPAATHIKLTKDESGTDVDQSLYRSM 1342
++++ +D I++SQS Y K ++ KF +E TP + I S D + RS+
Sbjct: 1126 IRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCNTPC-RSL 1184
Query: 1343 ICSLLYLT-ASRPDIAFSIDVCARYQAAPKESHLIHVKRIIKYINGTTDYGTFYAHN--S 1399
I L+Y+ +RPD+ ++++ +RY + ++KR+++Y+ GT D + N
Sbjct: 1185 IGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAF 1244
Query: 1400 NSNLISYCDADWAGNADDGKSTSGGCFFLGN-NLISWFNKKQNCVSLSTTEAEYIAAGSW 1458
+ +I Y D+DWAG+ D KST+G F + + NLI W K+QN V+ S+TEAEY+A
Sbjct: 1245 ENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEA 1304
Query: 1459 CTQLLWMKHMLREYNVK-QDVMTLYCENLSAINISKNPIQHSRTKHIDIRHHFIKDLVE 1516
+ LW+K +L N+K ++ + +Y +N I+I+ NP H R KHIDI++HF ++ V+
Sbjct: 1305 VREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQ 1363
>M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810
(ORF240b)
Length = 240
Score = 150 bits (380), Expect = 2e-35
Identities = 80/227 (35%), Positives = 130/227 (57%), Gaps = 3/227 (1%)
Query: 1239 MIAQIYVDDIVFGGMSDHMVEHFVRHMKSEFEMSLVGELNYFPGLQVKQMQDSIFISQSK 1298
M +YVDDI+ G S+ ++ + + S F M +G ++YF G+Q+K +F+SQ+K
Sbjct: 1 MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTK 60
Query: 1299 YAK*LVKKFGLEGSTHKRTPAATHIKLTKDESGTDV-DQSLYRSMICSLLYLTASRPDIA 1357
YA+ ++ G+ TP +KL S D S +RS++ +L YLT +RPDI+
Sbjct: 61 YAEQILNNAGMLDCKPMSTPLP--LKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDIS 118
Query: 1358 FSIDVCARYQAAPKESHLIHVKRIIKYINGTTDYGTFYAHNSNSNLISYCDADWAGNADD 1417
+++++ + P + +KR+++Y+ GT +G + NS N+ ++CD+DWAG
Sbjct: 119 YAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTST 178
Query: 1418 GKSTSGGCFFLGNNLISWFNKKQNCVSLSTTEAEYIAAGSWCTQLLW 1464
+ST+G C FLG N+ISW K+Q VS S+TE EY A +L W
Sbjct: 179 RRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B)
Length = 1770
Score = 114 bits (285), Expect = 2e-24
Identities = 113/495 (22%), Positives = 206/495 (40%), Gaps = 38/495 (7%)
Query: 552 DSGCSRHMNSVKMYLDNIKPHSTSFVTFGDGAK-----GRIKGSEKIVSGGSPNLSNVLL 606
DSG S+ + YL + P+S + D K I G+ L
Sbjct: 457 DSGASQTLVRSAHYLHHATPNSE--INIVDAQKQDIPINAIGNLHFNFQNGTKTSIKALH 514
Query: 607 VEGLTANLISISQLCDLDLNVSSNKAGCTVTNENEEVVMTGVRSKDNCYMWSPQNKAMSS 666
+ +L+S+S+L + ++ + ++ V+ + + Y S + S
Sbjct: 515 TPNIAYDLLSLSELANQNITACFTR---NTLERSDGTVLAPIVKHGDFYWLSKKYLIPSH 571
Query: 667 MCLVSMEDEAK----------LWHQK*GHLNPTSMKKVISKEAIRGIPRLKIEEDKV--- 713
+ +++ + K L H+ GH N S++K + K A+ + IE
Sbjct: 572 ISKLTINNVNKSKSVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTY 631
Query: 714 -CGECQIGKQTKTSHKKLTQIGTTRS---LQLLHMDLMGPMHKESFGGKRYVFVCVDDFS 769
C +C IGK TK H K +++ S Q LH D+ GP+H Y D+ +
Sbjct: 632 QCPDCLIGKSTKHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKT 691
Query: 770 RFTWVNFLAEKSET--FEVFRELSQQLQGEKGYGIVKIRSDHGKEFENGKFSEYCGNEGI 827
RF WV L ++ E VF + ++ + ++ I+ D G E+ N ++ N GI
Sbjct: 692 RFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGI 751
Query: 828 KHEFSAPITPQQNGVVERKNRTLQESARVMLHAKKVPYHLWAEAINTACYI-HYRVTIRS 886
++ + +GV ER NRTL R +LH +P HLW A+ + I + V+ ++
Sbjct: 752 TACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKN 811
Query: 887 GTDSTLYELWKGKKPTVKYFYVFESRCYILTDREQRRKLDPKSDEGLFLGYSINSKAYRV 946
+ + G T + + I+ + K+ P+ G L S NS Y +
Sbjct: 812 DKSARQHAGLAGLDITTILPF---GQPVIVNNHNPDSKIHPRGIPGYALHPSRNSYGYII 868
Query: 947 FNSRTKTMMESIN-VVVDDMVSSLNEINVDG---DDNVPQIVDERPNDCDIRSDTEPEEE 1002
+ K +++ N V++ D S L++ N D DD++ ++ + + +++TE +
Sbjct: 869 YLPSLKKTVDTTNYVILQDKQSKLDQFNYDTLTFDDDLNRLTAHNQSFIE-QNETEQSYD 927
Query: 1003 KEQESSKEIVPSIRI 1017
+ ES + I I
Sbjct: 928 QNTESDHDYQSEIEI 942
Score = 53.9 bits (128), Expect = 3e-06
Identities = 58/278 (20%), Positives = 112/278 (39%), Gaps = 32/278 (11%)
Query: 1243 IYVDDIVFGGMSDHMVEHFVRHMKSEFEMSLVGELNYFPGLQVKQMQDSIFISQSKYAK* 1302
++VDD++ + + + +K +++ ++ G ++Q I + KY +
Sbjct: 1439 LFVDDMILFSKDLNANKKIITTLKKQYDTKIINL-----GESDNEIQYDILGLEIKYQRS 1493
Query: 1303 LVKKFGLEGSTHKRTPAATHIKLTK--------------DESGTDVDQSLYRSMICSLLY 1348
K G+E S ++ P K D+ ++D+ Y+ + +
Sbjct: 1494 KYMKLGMEKSLTEKLPKLNVPLNPKGKKLRAPGQPGHYIDQDELEIDEDEYKEKVHEMQK 1553
Query: 1349 LTAS--------RPDIAFSIDVCARYQAAPKESHLIHVKRIIKYINGTTDYGTFYAHNS- 1399
L R D+ + I+ A++ P L +I+++ T D + N
Sbjct: 1554 LIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKP 1613
Query: 1400 ---NSNLISYCDADWAGNADDGKSTSGGCFFLGNNLISWFNKKQNCVSLSTTEAEYIAAG 1456
++ L++ DA + GN KS G F L +I + K + STTEAE A
Sbjct: 1614 TKPDNKLVAISDASY-GNQPYYKSQIGNIFLLNGKVIGGKSTKASLTCTSTTEAEIHAVS 1672
Query: 1457 SWCTQLLWMKHMLREYNVKQDVMTLYCENLSAINISKN 1494
L + H+++E N K + L ++ S I+I K+
Sbjct: 1673 EAIPLLNNLSHLVQELNKKPIIKGLLTDSRSTISIIKS 1710
>YMD9_YEAST (Q03434) Transposon Ty1 protein B
Length = 1328
Score = 98.6 bits (244), Expect = 1e-19
Identities = 95/438 (21%), Positives = 178/438 (39%), Gaps = 33/438 (7%)
Query: 604 VLLVEGLTANLISISQLCDLDLNVSSNKAGCTVTNENEEVVMTGVRSKDNCYMWS----- 658
VL + +L+S+++L +D+ K V ++ V+ + + Y S
Sbjct: 89 VLHTPNIAYDLLSLNELAAVDITACFTK---NVLERSDGTVLAPIVKYGDFYWVSKKYLL 145
Query: 659 PQNKAMSSMCLVSMEDEAKLW-----HQK*GHLNPTSMKKVISKEAIRGIPRLKIEE--- 710
P N ++ ++ V + + + H+ H N +++ + I ++
Sbjct: 146 PSNISVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDRSSA 205
Query: 711 -DKVCGECQIGKQTKTSHKKLTQIGTTRS---LQLLHMDLMGPMHKESFGGKRYVFVCVD 766
D C +C IGK TK H K +++ S Q LH D+ GP+H Y D
Sbjct: 206 IDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTD 265
Query: 767 DFSRFTWVNFLAEKSET--FEVFRELSQQLQGEKGYGIVKIRSDHGKEFENGKFSEYCGN 824
+ ++F WV L ++ E +VF + ++ + ++ I+ D G E+ N ++
Sbjct: 266 ETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEK 325
Query: 825 EGIKHEFSAPITPQQNGVVERKNRTLQESARVMLHAKKVPYHLWAEAINTACYIHYRVTI 884
GI ++ + +GV ER NRTL + R L +P HLW AI + + R ++
Sbjct: 326 NGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIV--RNSL 383
Query: 885 RSGTDSTLYELWKGKKPTVKYFYVFESRCYILTDREQRRKLDPKSDEGLFLGYSINSKAY 944
S G + + I+ D K+ P+ G L S NS Y
Sbjct: 384 ASPKSKKSARQHAGLAGLDISTLLPFGQPVIVNDHNPNSKIHPRGIPGYALHPSRNSYGY 443
Query: 945 RVFNSRTKTMMESIN-VVVDDMVSSLNEINVDG---DDNVPQIVDE-----RPNDCDIRS 995
++ K +++ N V++ S L++ N D D+++ ++ N+
Sbjct: 444 IIYLPSLKKTVDTTNYVILQGKESRLDQFNYDALTFDEDLNRLTASYQSFIASNEIQQSD 503
Query: 996 DTEPEEEKEQESSKEIVP 1013
D E + + +S E+ P
Sbjct: 504 DLNIESDHDFQSDIELHP 521
Score = 52.8 bits (125), Expect = 7e-06
Identities = 57/278 (20%), Positives = 113/278 (40%), Gaps = 32/278 (11%)
Query: 1243 IYVDDIVFGGMSDHMVEHFVRHMKSEFEMSLVGELNYFPGLQVKQMQDSIFISQSKYAK* 1302
++VDD++ + + + +K +++ ++ G ++Q I + KY +
Sbjct: 997 LFVDDMILFSKDLNANKKIITTLKKQYDTKIINL-----GESDNEIQYDILGLEIKYQRG 1051
Query: 1303 LVKKFGLEGSTHKRTP--------------AATHIKLTKDESGTDVDQSLYRSMICSLLY 1348
K G+E S ++ P A L D+ ++D+ Y+ + +
Sbjct: 1052 KYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKEKVHEMQK 1111
Query: 1349 LTAS--------RPDIAFSIDVCARYQAAPKESHLIHVKRIIKYINGTTDYGTFYAHNS- 1399
L R D+ + I+ A++ P L +I+++ T D + N
Sbjct: 1112 LIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKP 1171
Query: 1400 ---NSNLISYCDADWAGNADDGKSTSGGCFFLGNNLISWFNKKQNCVSLSTTEAEYIAAG 1456
++ L++ DA + GN KS G + L +I + K + STTEAE A
Sbjct: 1172 TEPDNKLVAISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAEIHAIS 1230
Query: 1457 SWCTQLLWMKHMLREYNVKQDVMTLYCENLSAINISKN 1494
L + ++++E N K + L ++ S I+I K+
Sbjct: 1231 ESVPLLNNLSYLIQELNKKPIIKGLLTDSRSTISIIKS 1268
>YMT5_YEAST (Q04214) Transposon Ty1 protein B
Length = 1328
Score = 98.2 bits (243), Expect = 2e-19
Identities = 95/435 (21%), Positives = 179/435 (40%), Gaps = 39/435 (8%)
Query: 604 VLLVEGLTANLISISQLCDLDLNVSSNKAGCTVTNENEEVVMTGVRSKDNCYMWS----- 658
VL + +L+S+++L +D+ K V ++ V+ + + Y S
Sbjct: 89 VLHTPNIAYDLLSLNELAAVDITACFTK---NVLERSDGTVLAPIVKYGDFYWVSKKYLL 145
Query: 659 PQNKAMSSMCLVSMEDEAKLW-----HQK*GHLNPTSMKKVISKEAIRGIPRLKIEE--- 710
P N ++ ++ V + + + H+ H N +++ + I ++
Sbjct: 146 PSNISVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSA 205
Query: 711 -DKVCGECQIGKQTKTSHKKLTQIGTTRS---LQLLHMDLMGPMHKESFGGKRYVFVCVD 766
D C +C IGK TK H K +++ S Q LH D+ GP+H Y D
Sbjct: 206 IDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTD 265
Query: 767 DFSRFTWVNFLAEKSET--FEVFRELSQQLQGEKGYGIVKIRSDHGKEFENGKFSEYCGN 824
+ ++F WV L ++ E +VF + ++ + ++ I+ D G E+ N ++
Sbjct: 266 ETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEK 325
Query: 825 EGIKHEFSAPITPQQNGVVERKNRTLQESARVMLHAKKVPYHLWAEAINTACYIHYRVTI 884
GI ++ + +GV ER NRTL + R L +P HLW AI + + R ++
Sbjct: 326 NGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIV--RNSL 383
Query: 885 RSGTDSTLYELWKGKKPTVKYFYVFESRCYILTDREQRRKLDPKSDEGLFLGYSINSKAY 944
S G + + I+ D K+ P+ G L S NS Y
Sbjct: 384 ASPKSKKSARQHAGLAGLDISTLLPFGQPVIVNDHNPNSKIHPRGIPGYALHPSRNSYGY 443
Query: 945 RVFNSRTKTMMESIN-VVVDDMVSSLNEINVDG---DDNVPQIVD-----------ERPN 989
++ K +++ N V++ S L++ N D D+++ ++ ++ N
Sbjct: 444 IIYLPSLKKTVDTTNYVILQGKESRLDQFNYDALTFDEDLNRLTASYHSFIASNEIQQSN 503
Query: 990 DCDIRSDTEPEEEKE 1004
D +I SD + + + E
Sbjct: 504 DLNIESDHDFQSDIE 518
Score = 45.1 bits (105), Expect = 0.002
Identities = 57/276 (20%), Positives = 112/276 (39%), Gaps = 34/276 (12%)
Query: 1243 IYVDDIVFGGMSDHMVEHFVRHMKSEFEMSLVGELNYFPGLQVKQMQDSIFISQSKYAK* 1302
++VDD+V + + + + +K +++ ++ G +++Q I + KY +
Sbjct: 997 LFVDDMVLFSKNLNSNKRIIDKLKMQYDTKIINL-----GESDEEIQYDILGLEIKYQRG 1051
Query: 1303 LVKKFGLEGSTHKRTP--------------AATHIKLTKDESGTDVDQSLYRSMICSLLY 1348
K G+E S ++ P A L D+ ++++ Y+ + +
Sbjct: 1052 KYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQELELEEDDYKMKVHEMQK 1111
Query: 1349 LTAS--------RPDIAFSIDVCARYQAAPKESHLIHVKRIIKYINGTTDYGTFYAHNSN 1400
L R D+ + I+ A++ P + L +I++I T D + H S
Sbjct: 1112 LIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRDKQLIW-HKSK 1170
Query: 1401 -----SNLISYCDADWAGNADDGKSTSGGCFFLGNNLISWFNKKQNCVSLSTTEAEYIAA 1455
+ L+ DA + GN KS G + L +I + K + STTEAE A
Sbjct: 1171 PVKPTNKLVVISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAEIHAI 1229
Query: 1456 GSWCTQLLWMKHMLREYNVKQDVMTLYCENLSAINI 1491
L + ++++E + K L ++ S I+I
Sbjct: 1230 SESVPLLNNLSYLIQELDKKPITKGLLTDSKSTISI 1265
>YJZ7_YEAST (P47098) Transposon Ty1 protein B
Length = 1755
Score = 97.8 bits (242), Expect = 2e-19
Identities = 95/435 (21%), Positives = 178/435 (40%), Gaps = 39/435 (8%)
Query: 604 VLLVEGLTANLISISQLCDLDLNVSSNKAGCTVTNENEEVVMTGVRSKDNCYMWS----- 658
VL + +L+S+++L +D+ K V ++ V+ + + Y S
Sbjct: 516 VLHTPNIAYDLLSLNELAAVDITACFTK---NVLERSDGTVLAPIVQYGDFYWVSKRYLL 572
Query: 659 PQNKAMSSMCLVSMEDEAKLW-----HQK*GHLNPTSMKKVISKEAIRGIPRLKIEE--- 710
P N ++ ++ V + + + H+ H N +++ + I ++
Sbjct: 573 PSNISVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSA 632
Query: 711 -DKVCGECQIGKQTKTSHKKLTQIGTTRS---LQLLHMDLMGPMHKESFGGKRYVFVCVD 766
D C +C IGK TK H K +++ S Q LH D+ GP+H Y D
Sbjct: 633 IDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTD 692
Query: 767 DFSRFTWVNFLAEKSET--FEVFRELSQQLQGEKGYGIVKIRSDHGKEFENGKFSEYCGN 824
+ ++F WV L ++ E +VF + ++ + ++ I+ D G E+ N ++
Sbjct: 693 ETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEK 752
Query: 825 EGIKHEFSAPITPQQNGVVERKNRTLQESARVMLHAKKVPYHLWAEAINTACYIHYRVTI 884
GI ++ + +GV ER NRTL + R L +P HLW AI + + R ++
Sbjct: 753 NGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIV--RNSL 810
Query: 885 RSGTDSTLYELWKGKKPTVKYFYVFESRCYILTDREQRRKLDPKSDEGLFLGYSINSKAY 944
S G + + I+ D K+ P+ G L S NS Y
Sbjct: 811 ASPKSKKSARQHAGLAGLDISTLLPFGQPVIVNDHNPNSKIHPRGIPGYALHPSRNSYGY 870
Query: 945 RVFNSRTKTMMESIN-VVVDDMVSSLNEINVDG---DDNVPQIVD-----------ERPN 989
++ K +++ N V++ S L++ N D D+++ ++ + N
Sbjct: 871 IIYLPSLKKTVDTTNYVILQGKESRLDQFNYDALTFDEDLNRLTASYQSFIASNEIQESN 930
Query: 990 DCDIRSDTEPEEEKE 1004
D +I SD + + + E
Sbjct: 931 DLNIESDHDFQSDIE 945
Score = 53.9 bits (128), Expect = 3e-06
Identities = 58/278 (20%), Positives = 113/278 (39%), Gaps = 32/278 (11%)
Query: 1243 IYVDDIVFGGMSDHMVEHFVRHMKSEFEMSLVGELNYFPGLQVKQMQDSIFISQSKYAK* 1302
++VDD++ + + + +K +++ ++ G ++Q I + KY +
Sbjct: 1424 LFVDDMILFSKDLNANKKIITTLKKQYDTKIINL-----GESDNEIQYDILGLEIKYQRG 1478
Query: 1303 LVKKFGLEGSTHKRTP--------------AATHIKLTKDESGTDVDQSLYRSMICSLLY 1348
K G+E S ++ P A L D+ ++D+ Y+ + +
Sbjct: 1479 KYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKEKVHEMQK 1538
Query: 1349 LTAS--------RPDIAFSIDVCARYQAAPKESHLIHVKRIIKYINGTTDYGTFYAHNS- 1399
L R D+ + I+ A++ P L +I+++ T D + N
Sbjct: 1539 LIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKP 1598
Query: 1400 ---NSNLISYCDADWAGNADDGKSTSGGCFFLGNNLISWFNKKQNCVSLSTTEAEYIAAG 1456
++ L++ DA + GN KS G F L +I + K + STTEAE A
Sbjct: 1599 TEPDNKLVAISDASY-GNQPYYKSQIGNIFLLNGKVIGGKSTKASLTCTSTTEAEIHAIS 1657
Query: 1457 SWCTQLLWMKHMLREYNVKQDVMTLYCENLSAINISKN 1494
L + ++++E N K + L ++ S I+I K+
Sbjct: 1658 ESVPLLNNLSYLIQELNKKPIIKGLLTDSRSTISIIKS 1695
>YMU0_YEAST (Q04670) Transposon Ty1 protein B
Length = 1328
Score = 97.4 bits (241), Expect = 3e-19
Identities = 95/438 (21%), Positives = 178/438 (39%), Gaps = 33/438 (7%)
Query: 604 VLLVEGLTANLISISQLCDLDLNVSSNKAGCTVTNENEEVVMTGVRSKDNCYMWS----- 658
VL + +L+S+++L +D+ K V ++ V+ + + Y S
Sbjct: 89 VLHTPNIAYDLLSLNELAAVDITACFTK---NVLERSDGTVLAPIVKYGDFYWVSKKYLL 145
Query: 659 PQNKAMSSMCLVSMEDEAKLW-----HQK*GHLNPTSMKKVISKEAIRGIPRLKIEE--- 710
P N ++ ++ V + + + H+ H N +++ + I ++
Sbjct: 146 PSNISVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSA 205
Query: 711 -DKVCGECQIGKQTKTSHKKLTQIGTTRS---LQLLHMDLMGPMHKESFGGKRYVFVCVD 766
D C +C IGK TK H K +++ S Q LH D+ GP+H Y D
Sbjct: 206 IDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTD 265
Query: 767 DFSRFTWVNFLAEKSET--FEVFRELSQQLQGEKGYGIVKIRSDHGKEFENGKFSEYCGN 824
+ ++F WV L ++ E +VF + ++ + ++ I+ D G E+ N ++
Sbjct: 266 ETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEK 325
Query: 825 EGIKHEFSAPITPQQNGVVERKNRTLQESARVMLHAKKVPYHLWAEAINTACYIHYRVTI 884
GI ++ + +GV ER NRTL + R L +P HLW AI + + R ++
Sbjct: 326 NGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIV--RNSL 383
Query: 885 RSGTDSTLYELWKGKKPTVKYFYVFESRCYILTDREQRRKLDPKSDEGLFLGYSINSKAY 944
S G + + I+ D K+ P+ G L S NS Y
Sbjct: 384 ASPKSKKSARQHAGLAGLDISTLLPFGQPVIVNDHNPNSKIHPRGIPGYALHPSRNSYGY 443
Query: 945 RVFNSRTKTMMESIN-VVVDDMVSSLNEINVDG---DDNVPQIVDE-----RPNDCDIRS 995
++ K +++ N V++ S L++ N D D+++ ++ N+
Sbjct: 444 IIYLPSLKKTVDTTNYVILQGKESRLDQFNYDALTFDEDLNRLTASYQSFIASNEIQQSD 503
Query: 996 DTEPEEEKEQESSKEIVP 1013
D E + + +S E+ P
Sbjct: 504 DLNIESDHDFQSDIELHP 521
Score = 47.8 bits (112), Expect = 2e-04
Identities = 58/276 (21%), Positives = 110/276 (39%), Gaps = 34/276 (12%)
Query: 1243 IYVDDIVFGGMSDHMVEHFVRHMKSEFEMSLVGELNYFPGLQVKQMQDSIFISQSKYAK* 1302
++VDD++ + + + +K +++ ++ G ++Q I + KY +
Sbjct: 997 LFVDDMILFSKDLNANKKIITTLKKQYDTKIINL-----GESDNEIQYDILGLEIKYQRG 1051
Query: 1303 LVKKFGLEGSTHKRTP--------------AATHIKLTKDESGTDVDQSLYRSMICSLLY 1348
K G+E S ++ P A L D+ ++++ Y+ + +
Sbjct: 1052 KYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQELELEEDDYKMKVHEMQK 1111
Query: 1349 LTAS--------RPDIAFSIDVCARYQAAPKESHLIHVKRIIKYINGTTDYGTFYAHNSN 1400
L R D+ + I+ A++ P + L +I++I T D + H S
Sbjct: 1112 LIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRDKQLIW-HKSK 1170
Query: 1401 -----SNLISYCDADWAGNADDGKSTSGGCFFLGNNLISWFNKKQNCVSLSTTEAEYIAA 1455
+ L+ DA + GN KS G + L +I + K + STTEAE A
Sbjct: 1171 PVKPTNKLVVISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAEIHAI 1229
Query: 1456 GSWCTQLLWMKHMLREYNVKQDVMTLYCENLSAINI 1491
L + H+++E N K L ++ S I+I
Sbjct: 1230 SESVPLLNNLSHLVQELNKKPITKGLLTDSKSTISI 1265
>YME4_YEAST (Q04711) Transposon Ty1 protein B
Length = 1328
Score = 97.4 bits (241), Expect = 3e-19
Identities = 95/438 (21%), Positives = 178/438 (39%), Gaps = 33/438 (7%)
Query: 604 VLLVEGLTANLISISQLCDLDLNVSSNKAGCTVTNENEEVVMTGVRSKDNCYMWS----- 658
VL + +L+S+++L +D+ K V ++ V+ + + Y S
Sbjct: 89 VLHTPNIAYDLLSLNELAAVDITACFTK---NVLERSDGTVLAPIVKYGDFYWVSKKYLL 145
Query: 659 PQNKAMSSMCLVSMEDEAKLW-----HQK*GHLNPTSMKKVISKEAIRGIPRLKIEE--- 710
P N ++ ++ V + + + H+ H N +++ + I ++
Sbjct: 146 PSNISVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSA 205
Query: 711 -DKVCGECQIGKQTKTSHKKLTQIGTTRS---LQLLHMDLMGPMHKESFGGKRYVFVCVD 766
D C +C IGK TK H K +++ S Q LH D+ GP+H Y D
Sbjct: 206 IDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTD 265
Query: 767 DFSRFTWVNFLAEKSET--FEVFRELSQQLQGEKGYGIVKIRSDHGKEFENGKFSEYCGN 824
+ ++F WV L ++ E +VF + ++ + ++ I+ D G E+ N ++
Sbjct: 266 ETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEK 325
Query: 825 EGIKHEFSAPITPQQNGVVERKNRTLQESARVMLHAKKVPYHLWAEAINTACYIHYRVTI 884
GI ++ + +GV ER NRTL + R L +P HLW AI + + R ++
Sbjct: 326 NGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIV--RNSL 383
Query: 885 RSGTDSTLYELWKGKKPTVKYFYVFESRCYILTDREQRRKLDPKSDEGLFLGYSINSKAY 944
S G + + I+ D K+ P+ G L S NS Y
Sbjct: 384 ASPKSKKSARQHAGLAGLDISTLLPFGQPVIVNDHNPNSKIHPRGIPGYALHPSRNSYGY 443
Query: 945 RVFNSRTKTMMESIN-VVVDDMVSSLNEINVDG---DDNVPQIVDE-----RPNDCDIRS 995
++ K +++ N V++ S L++ N D D+++ ++ N+
Sbjct: 444 IIYLPSLKKTVDTTNYVILQGKESRLDQFNYDALTFDEDLNRLTASYQSFIASNEIQQSD 503
Query: 996 DTEPEEEKEQESSKEIVP 1013
D E + + +S E+ P
Sbjct: 504 DLNIESDHDFQSDIELHP 521
Score = 52.0 bits (123), Expect = 1e-05
Identities = 57/275 (20%), Positives = 110/275 (39%), Gaps = 32/275 (11%)
Query: 1243 IYVDDIVFGGMSDHMVEHFVRHMKSEFEMSLVGELNYFPGLQVKQMQDSIFISQSKYAK* 1302
++VDD++ + + + +K +++ ++ G ++Q I + KY +
Sbjct: 997 LFVDDMILFSKDLNANKKIITTLKKQYDTKIINL-----GESDNEIQYDILGLEIKYQRG 1051
Query: 1303 LVKKFGLEGSTHKRTP--------------AATHIKLTKDESGTDVDQSLYRSMICSLLY 1348
K G+E S ++ P A L D+ ++D+ Y+ + +
Sbjct: 1052 KYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKEKVHEMQK 1111
Query: 1349 LTAS--------RPDIAFSIDVCARYQAAPKESHLIHVKRIIKYINGTTDYGTFYAHNS- 1399
L R D+ + I+ A++ P L +I+++ T D + N
Sbjct: 1112 LIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKP 1171
Query: 1400 ---NSNLISYCDADWAGNADDGKSTSGGCFFLGNNLISWFNKKQNCVSLSTTEAEYIAAG 1456
++ L++ DA + GN KS G + L +I + K + STTEAE A
Sbjct: 1172 TEPDNKLVAISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAEIHAIS 1230
Query: 1457 SWCTQLLWMKHMLREYNVKQDVMTLYCENLSAINI 1491
L + H+++E N K L ++ S I+I
Sbjct: 1231 ESVPLLNNLSHLVQELNKKPITKGLLTDSKSTISI 1265
>YJZ9_YEAST (P47100) Transposon Ty1 protein B
Length = 1755
Score = 97.4 bits (241), Expect = 3e-19
Identities = 95/438 (21%), Positives = 178/438 (39%), Gaps = 33/438 (7%)
Query: 604 VLLVEGLTANLISISQLCDLDLNVSSNKAGCTVTNENEEVVMTGVRSKDNCYMWS----- 658
VL + +L+S+++L +D+ K V ++ V+ + + Y S
Sbjct: 516 VLHTPNIAYDLLSLNELAAVDITACFTK---NVLERSDGTVLAPIVKYGDFYWVSKKYLL 572
Query: 659 PQNKAMSSMCLVSMEDEAKLW-----HQK*GHLNPTSMKKVISKEAIRGIPRLKIEE--- 710
P N ++ ++ V + + + H+ H N +++ + I ++
Sbjct: 573 PSNISVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSA 632
Query: 711 -DKVCGECQIGKQTKTSHKKLTQIGTTRS---LQLLHMDLMGPMHKESFGGKRYVFVCVD 766
D C +C IGK TK H K +++ S Q LH D+ GP+H Y D
Sbjct: 633 IDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTD 692
Query: 767 DFSRFTWVNFLAEKSET--FEVFRELSQQLQGEKGYGIVKIRSDHGKEFENGKFSEYCGN 824
+ ++F WV L ++ E +VF + ++ + ++ I+ D G E+ N ++
Sbjct: 693 ETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEK 752
Query: 825 EGIKHEFSAPITPQQNGVVERKNRTLQESARVMLHAKKVPYHLWAEAINTACYIHYRVTI 884
GI ++ + +GV ER NRTL + R L +P HLW AI + + R ++
Sbjct: 753 NGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIV--RNSL 810
Query: 885 RSGTDSTLYELWKGKKPTVKYFYVFESRCYILTDREQRRKLDPKSDEGLFLGYSINSKAY 944
S G + + I+ D K+ P+ G L S NS Y
Sbjct: 811 ASPKSKKSARQHAGLAGLDISTLLPFGQPVIVNDHNPNSKIHPRGIPGYALHPSRNSYGY 870
Query: 945 RVFNSRTKTMMESIN-VVVDDMVSSLNEINVDG---DDNVPQIVDE-----RPNDCDIRS 995
++ K +++ N V++ S L++ N D D+++ ++ N+
Sbjct: 871 IIYLPSLKKTVDTTNYVILQGKESRLDQFNYDALTFDEDLNRLTASYQSFIASNEIQQSD 930
Query: 996 DTEPEEEKEQESSKEIVP 1013
D E + + +S E+ P
Sbjct: 931 DLNIESDHDFQSDIELHP 948
Score = 45.8 bits (107), Expect = 9e-04
Identities = 57/276 (20%), Positives = 112/276 (39%), Gaps = 34/276 (12%)
Query: 1243 IYVDDIVFGGMSDHMVEHFVRHMKSEFEMSLVGELNYFPGLQVKQMQDSIFISQSKYAK* 1302
++VDD+V + + + + +K +++ ++ G +++Q I + KY +
Sbjct: 1424 LFVDDMVLFSKNLNSNKRIIEKLKMQYDTKIINL-----GESDEEIQYDILGLEIKYQRG 1478
Query: 1303 LVKKFGLEGSTHKRTP--------------AATHIKLTKDESGTDVDQSLYRSMICSLLY 1348
K G+E S ++ P A L D+ ++++ Y+ + +
Sbjct: 1479 KYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQELELEEDDYKMKVHEMQK 1538
Query: 1349 LTAS--------RPDIAFSIDVCARYQAAPKESHLIHVKRIIKYINGTTDYGTFYAHNSN 1400
L R D+ + I+ A++ P + L +I++I T D + H S
Sbjct: 1539 LIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRDKQLIW-HKSK 1597
Query: 1401 -----SNLISYCDADWAGNADDGKSTSGGCFFLGNNLISWFNKKQNCVSLSTTEAEYIAA 1455
+ L+ DA + GN KS G + L +I + K + STTEAE A
Sbjct: 1598 PVKPTNKLVVISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAEIHAI 1656
Query: 1456 GSWCTQLLWMKHMLREYNVKQDVMTLYCENLSAINI 1491
L + ++++E + K L ++ S I+I
Sbjct: 1657 SESVPLLNNLSYLIQELDKKPITKGLLTDSKSTISI 1692
>YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein
Length = 308
Score = 81.6 bits (200), Expect = 1e-14
Identities = 58/230 (25%), Positives = 104/230 (45%), Gaps = 3/230 (1%)
Query: 1229 LFVKSDGGKVMIAQIYVDDIVFGGMSDHMVEHFVRHMKSEFEMSLVGELNYFPGLQVKQM 1288
L+ +S + +YVDD++ S + + + + + M +G+++ F GL + Q
Sbjct: 72 LYFRSTSDGPIYIGVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKVDKFLGLNIHQS 131
Query: 1289 QDS-IFISQSKYAK*LVKKFGLEGSTHKRTPAATHIKLTKDESGTDVDQSLYRSMICSLL 1347
+ I +S Y + + +TP L + S D + Y+S++ LL
Sbjct: 132 TNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDITPYQSIVGQLL 191
Query: 1348 YLT-ASRPDIAFSIDVCARYQAAPKESHLIHVKRIIKYINGTTDYGTFYAHNSNSNLISY 1406
+ RPDI++ + + +R+ P+ HL +R+++Y+ T Y S L Y
Sbjct: 192 FCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKYRSGSQVALTVY 251
Query: 1407 CDADWAGNADDGKSTSGGCFFLGNNLISWFNKK-QNCVSLSTTEAEYIAA 1455
CDA D ST G L ++W +KK + + + +TEAEYI A
Sbjct: 252 CDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEYITA 301
>YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein
Length = 1803
Score = 73.6 bits (179), Expect = 4e-12
Identities = 108/501 (21%), Positives = 189/501 (37%), Gaps = 50/501 (9%)
Query: 544 SSKEDWYFDSGCSRHMNSVKMYLDNIKP--HSTSFVTFGDGAKGRIKGSEKI-VSGGSPN 600
+SK+ D+G ++ + K L N + ST F G + +KG I + G N
Sbjct: 407 NSKKLVIIDTGSGVNITNDKTLLHNYEDSNRSTRFFGIGKNSSVSVKGYGYIKIKNGHNN 466
Query: 601 LSNVLLV-------EGLTANLISISQLCDLDLNVSSNKAGCTVTNENEEVVMTGVRSKDN 653
N L+ E + +++ + L+ + G + ++V + K N
Sbjct: 467 TDNKCLLTYYVPEEESTIISCYDLAKKTKMVLSRKYTRLGNKIIKIKTKIVNGVIHVKMN 526
Query: 654 CYMWSPQNKAMSSMCLVSMEDEAKL---------WHQK*GHLNPTSMKKVISKEAIR-GI 703
+ P + + + + KL H++ GH ++ I +
Sbjct: 527 ELIERPSDDSKINAIKPTSSPGFKLNKRSITLEDAHKRMGHTGIQQIENSIKHNHYEESL 586
Query: 704 PRLKIEEDKVCGECQIGKQTKTSHKKLTQIGTTRSLQLLH-------MDLMGPMHKESFG 756
+K + C C+I K TK +H G+ + H MD+ GP+ +
Sbjct: 587 DLIKEPNEFWCQTCKISKATKRNH----YTGSMNNHSTDHEPGSSWCMDIFGPVSSSNAD 642
Query: 757 GKRYVFVCVDDFSRF--TWVNFLAEKSETFEVFRELSQQLQGEKGYGIVKIRSDHGKEFE 814
KRY+ + VD+ +R+ T +F R+ Q ++ + + +I SD G EF
Sbjct: 643 TKRYMLIMVDNNTRYCMTSTHFNKNAETILAQVRKNIQYVETQFDRKVREINSDRGTEFT 702
Query: 815 NGKFSEYCGNEGIKHEFSAPITPQQNGVVERKNRTLQESARVMLHAKKVPYHLWAEAINT 874
N + EY ++GI H ++ NG ER RT+ A +L + W A+ +
Sbjct: 703 NDQIEEYFISKGIHHILTSTQDHAANGRAERYIRTIITDATTLLRQSNLRVKFWEYAVTS 762
Query: 875 ACYIHYRVTIRSGTDSTLYELWKGKKPTVKY--FYVFESRCYILTDREQRRKLDPKSDEG 932
A I + +S T + + TV+ F F + I +KL P
Sbjct: 763 ATNIRNYLEHKS-TGKLPLKAISRQPVTVRLMSFLPFGEKGIIW--NHNHKKLKPSGLPS 819
Query: 933 LFLGYSINSKAYRVFNSRTKTMMESINVVV-----DDMVSSLNEIN------VDGDDNVP 981
+ L NS Y+ F ++ S N + D V + IN D DD
Sbjct: 820 IILCKDPNSYGYKFFIPSKNKIVTSDNYTIPNYTMDGRVRNTQNINKSHQFSSDNDDEED 879
Query: 982 QIVDERPNDCDIRSDTEPEEE 1002
QI + N C+ + E + +
Sbjct: 880 QI-ETVTNLCEALENYEDDNK 899
Score = 63.9 bits (154), Expect = 3e-09
Identities = 72/305 (23%), Positives = 133/305 (43%), Gaps = 26/305 (8%)
Query: 1237 KVMIAQIYVDDIVFGGMSDHMVEHFVRHMKSEFEMSLVG--------------ELNYFPG 1282
K ++ +YVDD V ++ ++ F+ +KS FE+ + G +L Y
Sbjct: 1454 KNLMIAVYVDDCVIAASNEQRLDEFINKLKSNFELKITGTLIDDVLDTDILGMDLVYNKR 1513
Query: 1283 LQVKQMQDSIFISQ--SKYAK*L--VKKFGL-EGSTHKRTPAATHIKLTKDESGTDVDQS 1337
L + FI++ KY + L ++K + ST+K P ++++++E V +
Sbjct: 1514 LGTIDLTLKSFINRMDKKYNEELKKIRKSSIPHMSTYKIDPKKDVLQMSEEEFRQGVLK- 1572
Query: 1338 LYRSMICSLLYLT-ASRPDIAFSIDVCARYQAAPKESHLIHVKRIIKYINGTTDYGTFYA 1396
+ ++ L Y+ R DI F++ AR P E + +II+Y+ D G Y
Sbjct: 1573 -LQQLLGELNYVRHKCRYDIEFAVKKVARLVNYPHERVFYMIYKIIQYLVRYKDIGIHYD 1631
Query: 1397 H--NSNSNLISYCDADWAGNADDGKSTSGGCFFLGNNLISWFNKKQNCVSLSTTEAEYIA 1454
N + +I+ DA G+ D +S G + G N+ + ++ K +S+TEAE A
Sbjct: 1632 RDCNKDKKVIAITDAS-VGSEYDAQSRIGVILWYGMNIFNVYSNKSTNRCVSSTEAELHA 1690
Query: 1455 AGSWCTQLLWMKHMLREYNV-KQDVMTLYCENLSAINISKNPIQHSRTKHIDIRHHFIKD 1513
+K L+E + + + ++ AI Q + K I+ IK+
Sbjct: 1691 IYEGYADSETLKVTLKELGEGDNNDIVMITDSKPAIQGLNRSYQQPKEKFTWIKTEIIKE 1750
Query: 1514 LVEEK 1518
++EK
Sbjct: 1751 KIKEK 1755
>M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240
(ORF111a)
Length = 111
Score = 63.2 bits (152), Expect = 5e-09
Identities = 28/88 (31%), Positives = 53/88 (59%), Gaps = 5/88 (5%)
Query: 1347 LYLTASRPDIAFSIDVCARYQAAPKESHLIHVKRIIKYINGTTDYGTFYAHNSNSNLISY 1406
+YLT +RPD+ F+++ +++ +A + + + V +++ Y+ GT G FY+ S+ L ++
Sbjct: 1 MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60
Query: 1407 CDADWAGNADDGKSTSGGC-----FFLG 1429
D+DWA D +S +G C +FLG
Sbjct: 61 ADSDWASCPDTRRSVTGFCSLVPLWFLG 88
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 58.2 bits (139), Expect = 2e-07
Identities = 56/218 (25%), Positives = 95/218 (42%), Gaps = 11/218 (5%)
Query: 684 GHLNPTSMKKVISKEAIRGIPRLKIEED-KVCGECQIGKQTKTSHKKLTQIGTTRSLQLL 742
GH M +++ ++ R+ +E + C +C LT T L+++
Sbjct: 1479 GHFGIKKMWRMVHRKFYWPQMRVCVENCVRTCAKCLCANDHSKLTSSLTPYRMTFPLEIV 1538
Query: 743 HMDLMGPMHKESFGGKRYVFVCVDDFSRF-TWVNFLAEKSETFEVFRELSQQLQGEKGYG 801
DLM S G RY+ +D F+++ T V +K+ET V + ++ +G
Sbjct: 1539 ACDLMDV--GLSVQGNRYILTIIDLFTKYGTAVPIPDKKAET--VLKAFVERWAIGEGRI 1594
Query: 802 IVKIRSDHGKEFENGKFSEYCGNEGIKHEFSAPITPQQNGVVERKNRTLQESARVMLHAK 861
+K+ +D GKEF NG F+++ I+H + + NG VER N+T+ +M
Sbjct: 1595 PLKLLTDQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANGAVERFNKTIM---HIMKKKT 1651
Query: 862 KVPYHLWAEAINTACYIHYRVTIRSGTDSTLYELWKGK 899
VP W + + A Y Y + T T L G+
Sbjct: 1652 AVPME-WDDQVVYAVYA-YNNCVHENTGETPMFLMHGR 1687
>POL_IPHA (P04026) Putative Pol polyprotein [Contains: Integrase
(IN); Reverse transcriptase/ribonuclease H (EC 2.7.7.49)
(EC 3.1.26.4) (RT)]
Length = 863
Score = 57.4 bits (137), Expect = 3e-07
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query: 737 RSLQLLHMDLMGPMHKESFGGKRYVFVCVDDFSRFTWVNFLAEKSETFEVFRELSQQLQG 796
R LQ+ MD+ H SFG +YV V VD S + L + ++ + L+
Sbjct: 599 RPLQMWQMDVT---HIPSFGRLQYVHVSVDTCSGVMFATPLTGEKASYVI----QHCLEA 651
Query: 797 EKGYGIVKIRSDHGKEFENGKFSEYCGNEGIKHEFSAPITPQQNGVVERKNRTLQ 851
+G +I++D+G + + KF ++C + H P PQ G+VER +RTL+
Sbjct: 652 WSAWGKPRIKTDNGPAYTSQKFRQFCRQMDVTHLTGLPYNPQGQGIVERAHRTLK 706
>POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1161
Score = 56.6 bits (135), Expect = 5e-07
Identities = 45/176 (25%), Positives = 78/176 (43%), Gaps = 9/176 (5%)
Query: 693 KVISKEAIRGIPRLKIEEDKVCGECQIGKQTK-TSHKKLTQIGTTRSLQLLHMDLMGPMH 751
KV SK + + ++ + C +C + T TS L + + ++D +GP+
Sbjct: 837 KVSSKYWWPNLRKDVVKSIRQCKQCLVTNATNLTSPPILRPVKPLKPFDKFYIDYIGPLP 896
Query: 752 KESFGGKRYVFVCVDDFSRFTWVNFLAEKSETFEVFRELSQQLQGEKGYGIVKI-RSDHG 810
+ G +V V VD + F W+ S + V + L I K+ SD G
Sbjct: 897 PSN--GYLHVLVVVDSMTGFVWLYPTKAPSTSATV-----KALNMLTSIAIPKVLHSDQG 949
Query: 811 KEFENGKFSEYCGNEGIKHEFSAPITPQQNGVVERKNRTLQESARVMLHAKKVPYH 866
F + F+++ +GI+ EFS P PQ +G VERKN ++ +L + ++
Sbjct: 950 AAFTSSTFADWAKEKGIQLEFSTPYHPQSSGKVERKNSDIKRLLTKLLIGRPAKWY 1005
>POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)]
Length = 886
Score = 54.3 bits (129), Expect = 3e-06
Identities = 47/168 (27%), Positives = 68/168 (39%), Gaps = 12/168 (7%)
Query: 704 PRLKIEEDKVCGECQIGKQTKTSHKKLTQI----GTTRSLQLLHMDLMGPMHKESFGGKR 759
P ++ + K G CQ T S+K I + +D +GP+ G
Sbjct: 637 PNMRKDVVKQLGRCQQCLITNASNKASGPILRPDRPQKPFDKFFIDYIGPLPPSQ--GYL 694
Query: 760 YVFVCVDDFSRFTWVNFLAEKSETFEVFRELSQQLQGEKGYGIVK-IRSDHGKEFENGKF 818
YV V VD + FTW+ S + V + L I K I SD G F + F
Sbjct: 695 YVLVVVDGMTGFTWLYPTKAPSTSATV-----KSLNVLTSIAIPKVIHSDQGAAFTSSTF 749
Query: 819 SEYCGNEGIKHEFSAPITPQQNGVVERKNRTLQESARVMLHAKKVPYH 866
+E+ GI EFS P PQ VERKN ++ +L + ++
Sbjct: 750 AEWAKERGIHLEFSTPYHPQSGSKVERKNSDIKRLLTKLLVGRPTKWY 797
>POL_MMTVB (P03365) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)]
Length = 899
Score = 53.1 bits (126), Expect = 6e-06
Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 9/130 (6%)
Query: 747 MGPMHKESFGGKRYVFVCVDDFSRFTWVNFLAEKSETFEVFRELSQQLQGEKGY-GIV-K 804
M H FG +YV V VD +S FT+ + T E +++ Q L Y GI K
Sbjct: 644 MDVTHVSEFGKLKYVHVTVDTYSHFTFAT-----ARTGEATKDVLQHLAQSFAYMGIPQK 698
Query: 805 IRSDHGKEFENGKFSEYCGNEGIKHEFSAPITPQQNGVVERKNRTLQESARVMLHAKK-- 862
I++D+ + + E+ I H P PQ +VER ++ ++ + A K
Sbjct: 699 IKTDNAPAYVSRSIQEFLARWKISHVTGIPYNPQGQAIVERTHQNIKAQLNKLQKAGKYY 758
Query: 863 VPYHLWAEAI 872
P+HL A A+
Sbjct: 759 TPHHLLAHAL 768
>POL_JSRV (P31623) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)]
Length = 870
Score = 53.1 bits (126), Expect = 6e-06
Identities = 49/183 (26%), Positives = 78/183 (41%), Gaps = 12/183 (6%)
Query: 730 LTQIGTT-RSLQLLHMDLMGPMHKESFGGKRYVFVCVDDFSRFTWVNFLAEKSETFEVFR 788
L Q G R L+ H+ H FG +YV V +D FS NFL T E R
Sbjct: 636 LPQYGVNPRGLRPNHLWQTDVTHIPQFGRLKYVHVSIDTFS-----NFLMASLHTGESTR 690
Query: 789 ELSQQLQG-EKGYGIVK-IRSDHGKEFENGKFSEYCGNEGIKHEFSAPITPQQNGVVERK 846
Q L GI + +++D+G + + F +C + I H+ P PQ G+VER
Sbjct: 691 HCIQHLLFCFSTSGIPQTLKTDNGPGYTSRSFQRFCLSFQIHHKTGIPYNPQGQGIVERA 750
Query: 847 NRTLQESARVMLHAKKVPYHLWAEAINTACYIHYRVTIRSGTDSTLYELW----KGKKPT 902
++ ++ ++ A+N A Y+ +T+ + +S W KKP
Sbjct: 751 HQRIKHQLLKQKKGNELYSPSPHNALNHALYVLNFLTLDTEGNSAAQRFWGERSSCKKPL 810
Query: 903 VKY 905
V++
Sbjct: 811 VRW 813
>POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1157
Score = 52.4 bits (124), Expect = 1e-05
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 8/124 (6%)
Query: 744 MDLMGPMHKESFGGKRYVFVCVDDFSRFTWVNFLAEKSETFEVFRELSQQLQGEKGYGIV 803
+D +GP+ + G +V V VD + F W+ S + V + L +
Sbjct: 891 IDYIGPLPPSN--GYLHVLVVVDSMTGFVWLYPTKAPSTSATV-----KALNMLTSIAVP 943
Query: 804 K-IRSDHGKEFENGKFSEYCGNEGIKHEFSAPITPQQNGVVERKNRTLQESARVMLHAKK 862
K I SD G F + F+++ N+GI+ EFS P PQ +G VERKN ++ +L +
Sbjct: 944 KVIHSDQGAAFTSATFADWAKNKGIQLEFSTPYHPQSSGKVERKNSDIKRLLTKLLVGRP 1003
Query: 863 VPYH 866
++
Sbjct: 1004 AKWY 1007
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.329 0.141 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 169,961,903
Number of Sequences: 164201
Number of extensions: 7157987
Number of successful extensions: 24802
Number of sequences better than 10.0: 126
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 24584
Number of HSP's gapped (non-prelim): 199
length of query: 1518
length of database: 59,974,054
effective HSP length: 123
effective length of query: 1395
effective length of database: 39,777,331
effective search space: 55489376745
effective search space used: 55489376745
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 73 (32.7 bits)
Lotus: description of TM0166.12