BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0162a.1
         (118 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CPD_ARATH (O04147) Cyclic phosphodiesterase (EC 3.1.4.-) (CPDase)     131  2e-31
CPD_WHEAT (P62809) Cyclic phosphodiesterase (EC 3.1.4.-) (CPDase...    32  0.26
YG59_YEAST (P53314) Hypothetical 26.7 kDa protein in TDS4-SOL4 i...    31  0.57
OPDA_HAEIN (P44573) Oligopeptidase A (EC 3.4.24.70)                    30  0.75
RI15_YEAST (P43565) Serine/threonine-protein kinase RIM15 (EC 2....    30  0.97
CA16_HUMAN (P12109) Collagen alpha 1(VI) chain precursor               29  1.7
YEAF_SCHPO (O14080) Hypothetical protein UNK4,15 in chromosome I       28  3.7
PYRD_OCEIH (Q8CWG1) Dihydroorotate dehydrogenase (EC 1.3.3.1) (D...    28  3.7
POL_IPMAI (P12894) Probable Pol polyprotein [Contains: Integrase...    28  3.7
CISY_COXBU (P18789) Citrate synthase (EC 2.3.3.1)                      28  3.7
GIDB_STRAW (Q82FE3) Methyltransferase gidB (EC 2.1.-.-) (Glucose...    28  4.8
MRAW_CAMJE (Q9PPL4) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)     27  6.3
G2O3_ARATH (O64692) Gibberellin 2-beta-dioxygenase 3 (EC 1.14.11...    27  6.3
DHE4_CHLSO (P28998) NADP-specific glutamate dehydrogenase (EC 1....    27  6.3
CA16_MOUSE (Q04857) Collagen alpha 1(VI) chain precursor               27  6.3
HTR5_HALN1 (Q48318) Halobacterial transducer protein V                 27  8.2

>CPD_ARATH (O04147) Cyclic phosphodiesterase (EC 3.1.4.-) (CPDase)
          Length = 181

 Score =  131 bits (330), Expect = 2e-31
 Identities = 61/108 (56%), Positives = 75/108 (68%)

Query: 6   IETQKKEVYSVWAIPPDHVRPRIAKLMTDLRSEFGGPHFEPHITVVGAITLTADDALNKL 65
           +E  KK+VYSVWA+P +   PR  KLM  LRSEF GP F PH+TV  +  LTAD+A    
Sbjct: 1   MEEVKKDVYSVWALPDEESEPRFKKLMEALRSEFTGPRFVPHVTVAVSAYLTADEAKKMF 60

Query: 66  RSACEELKAFQVTVDRVAAGTFFYQCVYLLLHPSPPVVETSAHCSNHF 113
            SAC+ LKA+  TVDRV+ GTFF+QCV+LLL  +P V+E   HC NHF
Sbjct: 61  ESACDGLKAYTATVDRVSTGTFFFQCVFLLLQTTPEVMEAGEHCKNHF 108


>CPD_WHEAT (P62809) Cyclic phosphodiesterase (EC 3.1.4.-) (CPDase)
          (Fragments)
          Length = 51

 Score = 32.0 bits (71), Expect = 0.26
 Identities = 13/19 (68%), Positives = 14/19 (73%)

Query: 40 GGPHFEPHITVVGAITLTA 58
          GGP FEPH TVVGA+   A
Sbjct: 4  GGPPFEPHATVVGAVAAAA 22


>YG59_YEAST (P53314) Hypothetical 26.7 kDa protein in TDS4-SOL4
          intergenic region
          Length = 239

 Score = 30.8 bits (68), Expect = 0.57
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 42 PHFEPHITVVGAITLTADDALNKLRSAC 69
          P FEPH+TV   +   + D +NK+ ++C
Sbjct: 34 PVFEPHVTVTSHLVCNSKDDVNKILTSC 61


>OPDA_HAEIN (P44573) Oligopeptidase A (EC 3.4.24.70)
          Length = 681

 Score = 30.4 bits (67), Expect = 0.75
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 19 IPPDHVRPRIAKLMTDLRSEFGGPHFEPHITVVGAI--TLTADDALNKLRSACEELKA 74
          I P+H+RP + KL+ D R+       +PH T    I      +D LN+  S    L +
Sbjct: 19 IKPEHIRPAVEKLIQDCRNTIEQVLKQPHFTWENFILPLTETNDRLNRAWSPVSHLNS 76


>RI15_YEAST (P43565) Serine/threonine-protein kinase RIM15 (EC
            2.7.1.37)
          Length = 1770

 Score = 30.0 bits (66), Expect = 0.97
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 5/50 (10%)

Query: 18   AIPPDHVRPRIAKLMTDLRSEFGGPHFEPHITVVGAITLTADDALNKLRS 67
            AIPP H+R R +  + D ++EFG  +F      + A+     DA+N+L+S
Sbjct: 1405 AIPP-HMRDRRSSKLNDSQTEFGSFNFRN----LSALDKANKDAINRLKS 1449


>CA16_HUMAN (P12109) Collagen alpha 1(VI) chain precursor
          Length = 1028

 Score = 29.3 bits (64), Expect = 1.7
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 12  EVYSVWAIPPDHVRPRIAKLMTD--LRSEFGGPHFEPHITVVGAITLTADDALNKLRSAC 69
           +V+SV AI PDH+ PR++ + TD   R  F    +        AI+ T D  ++ +++  
Sbjct: 185 KVFSV-AITPDHLEPRLSIIATDHTYRRNFTAADWGQSRDAEEAISQTIDTIVDMIKNNV 243

Query: 70  EEL 72
           E++
Sbjct: 244 EQV 246


>YEAF_SCHPO (O14080) Hypothetical protein UNK4,15 in chromosome I
          Length = 208

 Score = 28.1 bits (61), Expect = 3.7
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 46  PHITVVGAITLTADDALNKLRS--ACEELKAFQVTVDRVAAGTFFYQCVYLLLHPSPPVV 103
           PHIT+   I L  + +   +    A +      +   +VA G  FY+ VY+ +  +P + 
Sbjct: 68  PHITLARGIKLKPNQSFKSVLQYIASKRKSPLNIKFGKVAIGDSFYKRVYIQVEKTPGLE 127

Query: 104 E 104
           E
Sbjct: 128 E 128


>PYRD_OCEIH (Q8CWG1) Dihydroorotate dehydrogenase (EC 1.3.3.1)
           (Dihydroorotate oxidase) (DHOdehase) (DHODase) (DHOD)
          Length = 304

 Score = 28.1 bits (61), Expect = 3.7
 Identities = 15/52 (28%), Positives = 23/52 (43%)

Query: 22  DHVRPRIAKLMTDLRSEFGGPHFEPHITVVGAITLTADDALNKLRSACEELK 73
           DH  PR+AK  T + +   G   E +  V  +   T D    +L  +C  +K
Sbjct: 82  DHEVPRLAKYDTSIIANIAGSSIEEYEFVAASFNQTTDVDALELNISCPNVK 133


>POL_IPMAI (P12894) Probable Pol polyprotein [Contains: Integrase
           (IN); Reverse transcriptase/ribonuclease H (EC 2.7.7.49)
           (EC 3.1.26.4) (RT)]
          Length = 814

 Score = 28.1 bits (61), Expect = 3.7
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 5/70 (7%)

Query: 24  VRPRIAKLMTDLRSEFGGPHFEPHITVVGAITLTADDALNKLRSACEELKAFQVTVDRVA 83
           +RP +     +LR  F     +PHI+    +TL A+ AL K+  A +  +     + R+ 
Sbjct: 192 LRPFLKIPSAELRPLFSILEGDPHISSPRTLTLAANQALQKVEKALQNAQ-----LQRIE 246

Query: 84  AGTFFYQCVY 93
               F  CV+
Sbjct: 247 DSQPFSLCVF 256


>CISY_COXBU (P18789) Citrate synthase (EC 2.3.3.1)
          Length = 430

 Score = 28.1 bits (61), Expect = 3.7
 Identities = 18/67 (26%), Positives = 34/67 (49%), Gaps = 7/67 (10%)

Query: 39  FGGPHFEPH-----ITVVGAITLTADDALNKLRSACEELKAFQV--TVDRVAAGTFFYQC 91
           F G H++ H     ++ +GA++    DAL+  + A  EL A ++   +  +AA ++ Y  
Sbjct: 121 FNGFHYDAHPMAMVLSTIGALSAFYHDALDITKPADRELSAIRLIAKMPTLAAMSYKYSI 180

Query: 92  VYLLLHP 98
               +HP
Sbjct: 181 GQPFMHP 187


>GIDB_STRAW (Q82FE3) Methyltransferase gidB (EC 2.1.-.-) (Glucose
           inhibited division protein B)
          Length = 238

 Score = 27.7 bits (60), Expect = 4.8
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 4   TAIETQKKEVYSVWAIPPDHVRPRIAKLMTDLRSEFGGPHFEPHITVVGAITLTADDALN 63
           T I  + +EV     IPP HV    A    D  + +G P   P+  ++     TA++ L 
Sbjct: 120 TVIRGRAEEVMG--KIPPVHVVTARAVAPLDRLATWGIPLLRPYGEMLALKGDTAEEELK 177

Query: 64  KLRSACEELKAFQVTVDRVAAG 85
              +A  +L A + +V  V  G
Sbjct: 178 SAATALSKLGAVETSVLHVGEG 199


>MRAW_CAMJE (Q9PPL4) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)
          Length = 312

 Score = 27.3 bits (59), Expect = 6.3
 Identities = 13/41 (31%), Positives = 22/41 (52%)

Query: 35  LRSEFGGPHFEPHITVVGAITLTADDALNKLRSACEELKAF 75
           +R E G  H    I    AI+ + ++ L   RS+C +++AF
Sbjct: 264 MRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMRAF 304


>G2O3_ARATH (O64692) Gibberellin 2-beta-dioxygenase 3 (EC
          1.14.11.13) (Gibberellin 2-beta-hydroxylase 3)
          (Gibberellin 2-oxidase 3) (GA 2-oxidase 3)
          Length = 335

 Score = 27.3 bits (59), Expect = 6.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 42 PHFEPHITVVGAITLTADDALNKLRSACEELKAFQV 77
          P  +P   ++  I LT  DA  ++  ACEE   F+V
Sbjct: 18 PKCKPRPVLIPVIDLTDSDAKTQIVKACEEFGFFKV 53


>DHE4_CHLSO (P28998) NADP-specific glutamate dehydrogenase (EC
           1.4.1.4) (NADP-GDH) (Fragment)
          Length = 523

 Score = 27.3 bits (59), Expect = 6.3
 Identities = 22/76 (28%), Positives = 29/76 (37%), Gaps = 6/76 (7%)

Query: 31  LMTDLRSEFGGPHFEPHITVVGAITLTADDALNKLRSACEELKAFQVTVDRVAAGTFFYQ 90
           ++T    E+GG    P  T  GA+        N L+   E LK  +  V    AG     
Sbjct: 267 VLTGKGQEYGGSEIRPEATGYGAVLFVE----NVLKDKGESLKGKRCLVS--GAGNVAQY 320

Query: 91  CVYLLLHPSPPVVETS 106
           C  LLL     V+  S
Sbjct: 321 CAELLLEKGAIVLSLS 336


>CA16_MOUSE (Q04857) Collagen alpha 1(VI) chain precursor
          Length = 1025

 Score = 27.3 bits (59), Expect = 6.3
 Identities = 18/63 (28%), Positives = 33/63 (51%), Gaps = 3/63 (4%)

Query: 12  EVYSVWAIPPDHVRPRIAKLMTD--LRSEFGGPHFEPHITVVGAITLTADDALNKLRSAC 69
           +V+SV AI PDH+ PR++ + TD   R  F    +         I+ T D  ++ +++  
Sbjct: 184 KVFSV-AITPDHLEPRLSIIATDHTYRRNFTAADWGHSRDAEEVISQTIDTIVDMIKNNV 242

Query: 70  EEL 72
           E++
Sbjct: 243 EQV 245


>HTR5_HALN1 (Q48318) Halobacterial transducer protein V
          Length = 545

 Score = 26.9 bits (58), Expect = 8.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 51  VGAITLTADDALNKLRSACEELKAFQVTVDRVAA 84
           V  I    DD   +L S  EE+ ++  TV+ VAA
Sbjct: 251 VQEIAAGTDDQREQLESVAEEMDSYSATVEEVAA 284


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.321    0.134    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,954,885
Number of Sequences: 164201
Number of extensions: 480537
Number of successful extensions: 1189
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1178
Number of HSP's gapped (non-prelim): 17
length of query: 118
length of database: 59,974,054
effective HSP length: 94
effective length of query: 24
effective length of database: 44,539,160
effective search space: 1068939840
effective search space used: 1068939840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)