Lotus
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0158.4
         (1003 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

SBP1_ANTMA (Q38741) Squamosa-promoter binding protein 1               125  6e-28
SBP2_ANTMA (Q38740) Squamosa-promoter binding protein 2               124  2e-27
LG1_MAIZE (O04003) LIGULELESS1 protein                                112  6e-24
TWS1_MOUSE (P26687) Twist related protein 1 (M-twist)                  41  0.018
TWS1_HYLCO (Q8MIE7) Twist related protein 1                            40  0.024
TWS1_PANTR (Q8MI03) Twist related protein 1                            40  0.041
ORP1_HUMAN (Q9BXW6) Oxysterol binding protein-related protein 1 ...    39  0.053
TWS1_HUMAN (Q15672) Twist related protein 1 (H-twist)                  39  0.070
TWS1_PONPY (Q8MIB9) Twist related protein 1                            39  0.091
SUZ2_DROME (P25172) Suppressor 2 of zeste protein (Protein poste...    37  0.27
RH23_SCHPO (O74803) UV excision repair protein rhp23 (RAD23 homo...    37  0.27
ANK3_HUMAN (Q12955) Ankyrin 3 (ANK-3) (Ankyrin G)                      37  0.35
GIT2_MOUSE (Q9JLQ2) ARF GTPase-activating protein GIT2 (G protei...    36  0.59
GIT2_HUMAN (Q14161) ARF GTPase-activating protein GIT2 (G protei...    36  0.59
VGP_EBORE (Q66799) Structural glycoprotein precursor (Virion spi...    35  1.0
RA21_MOUSE (Q61550) Double-strand-break repair protein rad21 hom...    35  1.3
IKBE_MOUSE (O54910) NF-kappaB inhibitor epsilon (NF-kappa-BIE) (...    35  1.3
ANK2_HUMAN (Q01484) Ankyrin 2 (Brain ankyrin) (Ankyrin B) (Ankyr...    34  1.7
ANK1_MOUSE (Q02357) Ankyrin 1 (Erythrocyte ankyrin)                    34  1.7
ANK1_HUMAN (P16157) Ankyrin 1 (Erythrocyte ankyrin) (Ankyrin R)        34  1.7

>SBP1_ANTMA (Q38741) Squamosa-promoter binding protein 1
          Length = 131

 Score =  125 bits (314), Expect = 6e-28
 Identities = 64/123 (52%), Positives = 80/123 (65%), Gaps = 7/123 (5%)

Query: 110 GTLSLKLGGHAADREVASWDGGNGKKSRVA------GGGASNRAVCQVEDCCADLSRAKD 163
           G   +KL G     E     G + KK+R          G++ R+ CQVE+C A+++ AK 
Sbjct: 8   GKRVIKLPGSQEQGEEEDDIGEDSKKTRALTPSGKRASGSTQRS-CQVENCAAEMTNAKP 66

Query: 164 YHRRHKVCEMHSKATRALVGNAMQRFCQQCSRFHMLQEFDEGKRSCRRRLAGHNKRRRKT 223
           YHRRHKVCE H+KA   L     QRFCQQCSRFH L EFDE KRSCRRRLAGHN+RRRK+
Sbjct: 67  YHRRHKVCEFHAKAPVVLHSGLQQRFCQQCSRFHELSEFDEAKRSCRRRLAGHNERRRKS 126

Query: 224 NNE 226
           +++
Sbjct: 127 SHD 129


>SBP2_ANTMA (Q38740) Squamosa-promoter binding protein 2
          Length = 171

 Score =  124 bits (310), Expect = 2e-27
 Identities = 58/102 (56%), Positives = 73/102 (70%)

Query: 130 GGNGKKSRVAGGGASNRAVCQVEDCCADLSRAKDYHRRHKVCEMHSKATRALVGNAMQRF 189
           G +G+K   +GGG   +  C VE+C ADL   K Y++RH+VCE+H+KA    V   MQRF
Sbjct: 66  GKSGEKHTASGGGVVAQPCCLVENCGADLRNCKKYYQRHRVCEVHAKAPVVSVEGLMQRF 125

Query: 190 CQQCSRFHMLQEFDEGKRSCRRRLAGHNKRRRKTNNEAVPNG 231
           CQQCSRFH L EFD+ KRSCRRRLAGHN+RRRK++ E+   G
Sbjct: 126 CQQCSRFHDLSEFDQTKRSCRRRLAGHNERRRKSSLESHKEG 167


>LG1_MAIZE (O04003) LIGULELESS1 protein
          Length = 399

 Score =  112 bits (279), Expect = 6e-24
 Identities = 52/76 (68%), Positives = 59/76 (77%), Gaps = 1/76 (1%)

Query: 149 CQVEDCCADLSRAKDYHRRHKVCEMHSKATRALV-GNAMQRFCQQCSRFHMLQEFDEGKR 207
           CQ E C ADLS AK YHRRHKVCE HSKA   +  G   QRFCQQCSRFH+L EFD+ K+
Sbjct: 185 CQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVTAGGLHQRFCQQCSRFHLLDEFDDAKK 244

Query: 208 SCRRRLAGHNKRRRKT 223
           SCR+RLA HN+RRRK+
Sbjct: 245 SCRKRLADHNRRRRKS 260


>TWS1_MOUSE (P26687) Twist related protein 1 (M-twist)
          Length = 206

 Score = 40.8 bits (94), Expect = 0.018
 Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 68  PASNSSSSCSEEVDLRDPMGSREGERKRRVIVLEDDGLNEEGGTLSLKLGGHAADREVAS 127
           PA +S S+  EE D + P   + G RKRR       G    GG     +GG   D   + 
Sbjct: 12  PADDSLSNSEEEPDRQQPASGKRGARKRRSSRRSAGGSAGPGGATGGGIGG--GDEPGSP 69

Query: 128 WDGGNGKKSRVAGGG 142
             G  GKKS   GGG
Sbjct: 70  AQGKRGKKSAGGGGG 84


>TWS1_HYLCO (Q8MIE7) Twist related protein 1
          Length = 204

 Score = 40.4 bits (93), Expect = 0.024
 Identities = 28/77 (36%), Positives = 34/77 (43%), Gaps = 2/77 (2%)

Query: 68  PASNSSSSCSEEVDLRDPMGSREGERKRRVIVLEDDGLNEEGGTLSLKLGGHAADREVAS 127
           PA +S S+  EE D + P   + G RKRR       G    GG     +GG   D   + 
Sbjct: 12  PADDSLSNSEEEPDRQQPPSGKRGGRKRRSSRRSAGGGAGPGGAAGGGVGG--GDEPGSP 69

Query: 128 WDGGNGKKSRVAGGGAS 144
             G  GKKS   GGG S
Sbjct: 70  AQGKRGKKSAGCGGGGS 86


>TWS1_PANTR (Q8MI03) Twist related protein 1
          Length = 201

 Score = 39.7 bits (91), Expect = 0.041
 Identities = 28/80 (35%), Positives = 34/80 (42%), Gaps = 2/80 (2%)

Query: 68  PASNSSSSCSEEVDLRDPMGSREGERKRRVIVLEDDGLNEEGGTLSLKLGGHAADREVAS 127
           PA +S S+  EE D + P   + G RKRR       G    GG     +GG   D   + 
Sbjct: 12  PADDSLSNSEEEPDRQQPPSGKRGGRKRRSSRRSAGGGAGPGGAAGGGVGG--GDEPGSP 69

Query: 128 WDGGNGKKSRVAGGGASNRA 147
             G  GKKS   GGG    A
Sbjct: 70  AQGKRGKKSAGCGGGGGGGA 89


>ORP1_HUMAN (Q9BXW6) Oxysterol binding protein-related protein 1
           (OSBP-related protein 1) (ORP-1)
          Length = 950

 Score = 39.3 bits (90), Expect = 0.053
 Identities = 38/116 (32%), Positives = 50/116 (42%), Gaps = 8/116 (6%)

Query: 774 LSEMG--LLHRAVRRNSKQLVELLLTY-VPENISNEVRPEGKALVEGEK-QSFLFRPDAA 829
           L++MG   LHRA     K+LV LLL Y     I N      K +   E+ +S L   +  
Sbjct: 77  LNDMGDTPLHRAAFTGRKELVMLLLEYNADTTIVNGSGQTAKEVTHAEEIRSMLEAVERT 136

Query: 830 GPAGLTPLHIAAGKDGSEDVLDALTNDPCMVGIEAWKNARDSTGSTPEDYARLRGH 885
               L  L +AA ++G    L AL N P    +    N  D  G+TP   A  R H
Sbjct: 137 QQRKLEELLLAAAREGKTTELTALLNRPNPPDV----NCSDQLGNTPLHCAAYRAH 188


>TWS1_HUMAN (Q15672) Twist related protein 1 (H-twist)
          Length = 202

 Score = 38.9 bits (89), Expect = 0.070
 Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 68  PASNSSSSCSEEVDLRDPMGSREGERKRRVIVLEDDGLNEEGGTLSLKLGGHAADREVAS 127
           PA +S S+  EE D + P   + G RKRR       G    GG     +GG   D   + 
Sbjct: 12  PADDSLSNSEEEPDRQQPPSGKRGGRKRRSSRRSAGGGAGPGGAAGGGVGG--GDEPGSP 69

Query: 128 WDGGNGKKSRVAGGG 142
             G  GKKS   GGG
Sbjct: 70  AQGKRGKKSAGCGGG 84


>TWS1_PONPY (Q8MIB9) Twist related protein 1
          Length = 203

 Score = 38.5 bits (88), Expect = 0.091
 Identities = 29/81 (35%), Positives = 35/81 (42%), Gaps = 3/81 (3%)

Query: 68  PASNSSSSCSEEVDLRDPMGSREGERKRRVIVLEDDGLNE-EGGTLSLKLGGHAADREVA 126
           PA +S S+  EE D + P   + G RKRR       G     GG  S  +GG   D   +
Sbjct: 12  PADDSLSNSEEEPDRQQPPSGKRGGRKRRSSSRRSAGGGAGPGGAASGGVGG--GDEPGS 69

Query: 127 SWDGGNGKKSRVAGGGASNRA 147
              G  GKKS   GGG    A
Sbjct: 70  PAQGKRGKKSAGCGGGGGGGA 90


>SUZ2_DROME (P25172) Suppressor 2 of zeste protein (Protein posterior
            sex combs)
          Length = 1365

 Score = 37.0 bits (84), Expect = 0.27
 Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 19/110 (17%)

Query: 214  AGHNKRRRKTNNEAVPNGNPLNDDQTSSYLLISLLKILSNM--NSDRSDQTTDQDLLTHL 271
            AG+N      NN    N N  N++ TS+ L  +L KI  N+  NS+    TT        
Sbjct: 1075 AGNNNNNNNNNNN--NNNNNNNNNSTSNSLEAALNKIKQNISANSNGGPSTT-------- 1124

Query: 272  LRSLASRNGEQGGNNLSNILREPENLLREGGSSRESEMVPTLLSNGSQGS 321
              S ++ NG   G++L N+     ++L E  ++RE   +    S    GS
Sbjct: 1125 --SGSNSNGTTNGDDLQNL-----HMLSESATAREKISIKAASSGNGSGS 1167


>RH23_SCHPO (O74803) UV excision repair protein rhp23 (RAD23
           homolog)
          Length = 368

 Score = 37.0 bits (84), Expect = 0.27
 Identities = 28/85 (32%), Positives = 40/85 (46%), Gaps = 2/85 (2%)

Query: 775 SEMGLLHRAVRRNSKQLVELLLTYVPENISNEVRPE-GKALVEGEKQSFLFRPDAAG-PA 832
           SE+    RA   N  + VE LLT +PE+I N  R E   AL   ++QS    P + G PA
Sbjct: 162 SEVERAMRAAFNNPDRAVEYLLTGIPEDILNRQREESAAALAAQQQQSEALAPTSTGQPA 221

Query: 833 GLTPLHIAAGKDGSEDVLDALTNDP 857
            L      +  +  E   + + +DP
Sbjct: 222 NLFEQAALSENENQEQPSNTVGDDP 246


>ANK3_HUMAN (Q12955) Ankyrin 3 (ANK-3) (Ankyrin G)
          Length = 4377

 Score = 36.6 bits (83), Expect = 0.35
 Identities = 36/133 (27%), Positives = 53/133 (39%), Gaps = 32/133 (24%)

Query: 826 PDAAGPAGLTPLHIAAGKDGSEDVLDALTNDPCMVGIEAWKNARDSTGSTPEDYARLRGH 885
           PDAAG +GLTPLH+AA  D  +  L  L                   G++P  +A  +  
Sbjct: 591 PDAAGKSGLTPLHVAAHYDNQKVALLLL-----------------DQGASP--HAAAKNG 631

Query: 886 YTYIHLVQKKINKRQGAPHVVVEIPTNLTE--NDTNQKQNESSTTFEIAKTRDQGHCKLC 943
           YT +H+  KK           ++I T L E   D N    +   +  +A    +GH  + 
Sbjct: 632 YTPLHIAAKKNQ---------MDIATTLLEYGADANAVTRQGIASVHLA--AQEGHVDMV 680

Query: 944 DIKLSCRTAVGRS 956
            + L     V  S
Sbjct: 681 SLLLGRNANVNLS 693



 Score = 33.5 bits (75), Expect = 2.9
 Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 15/124 (12%)

Query: 780 LHRAVRRNSKQLVELLLTY-VPENISNE--VRPEGKALVEGEKQ--SFLFRPDAAGPAGL 834
           L+ A + N  ++V+ LL     ++++ E    P   AL +G  Q  S L   D  G   L
Sbjct: 144 LYMAAQENHLEVVKFLLDNGASQSLATEDGFTPLAVALQQGHDQVVSLLLENDTKGKVRL 203

Query: 835 TPLHIAAGKDGSEDVLDALTNDPCMVGIEAWKNARDSTGSTPEDYARLRGHYTYIHLVQK 894
             LHIAA KD ++     L ND          +    +G TP     +  HY  I++   
Sbjct: 204 PALHIAARKDDTKAAALLLQNDNN-------ADVESKSGFTP---LHIAAHYGNINVATL 253

Query: 895 KINK 898
            +N+
Sbjct: 254 LLNR 257


>GIT2_MOUSE (Q9JLQ2) ARF GTPase-activating protein GIT2 (G
           protein-coupled receptor kinase-interactor 2)
           (Cool-interacting tyrosine-phosphorylated protein 2)
           (CAT2) (CAT-2)
          Length = 708

 Score = 35.8 bits (81), Expect = 0.59
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 15/69 (21%)

Query: 820 QSFLFRPDAAGPAGLTPLHIA--AGKDGSEDVLDALTNDPCMVGIEAWKNARDSTGSTPE 877
           Q+  F P+     G TPLH+A  AG+    ++L     DP           +DS+G TP 
Sbjct: 158 QANFFHPEK----GSTPLHVASKAGQILQAELLAEYGADP---------GTQDSSGKTPV 204

Query: 878 DYARLRGHY 886
           DYAR  GH+
Sbjct: 205 DYARQGGHH 213


>GIT2_HUMAN (Q14161) ARF GTPase-activating protein GIT2 (G
           protein-coupled receptor kinase-interactor 2)
           (GRK-interacting protein 2) (Cool-interacting
           tyrosine-phosphorylated protein 2) (CAT2) (CAT-2)
          Length = 759

 Score = 35.8 bits (81), Expect = 0.59
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 15/69 (21%)

Query: 820 QSFLFRPDAAGPAGLTPLHIA--AGKDGSEDVLDALTNDPCMVGIEAWKNARDSTGSTPE 877
           Q+  F P+     G TPLH+A  AG+    ++L     DP           +DS+G TP 
Sbjct: 158 QANFFHPEK----GNTPLHVASKAGQILQAELLAVYGADP---------GTQDSSGKTPV 204

Query: 878 DYARLRGHY 886
           DYAR  GH+
Sbjct: 205 DYARQGGHH 213


>VGP_EBORE (Q66799) Structural glycoprotein precursor (Virion spike
           glycoprotein) [Contains: GP1; GP2]
          Length = 677

 Score = 35.0 bits (79), Expect = 1.0
 Identities = 47/229 (20%), Positives = 91/229 (39%), Gaps = 8/229 (3%)

Query: 226 EAVPNGNPLN--DDQTSSYLLISLLKILSNMNSDRSDQTTDQDLLTHLLRSLASRNGEQG 283
           +A P   P+N  DD TS Y+ ++L   +SN   + S+     D   H    L   +  Q 
Sbjct: 196 KATPAHEPVNTTDDSTSYYMTLTLSYEMSNFGGNESNTLFKVD--NHTYVQLDRPHTPQF 253

Query: 284 GNNLSNILREPENLLREGGSSRESEMVPTLLSNGSQGSPTDIRQH--QTVSMNKMQQEVV 341
              L+  LR    L    G    + + P +  +  + +  + +++  Q +    +  +++
Sbjct: 254 LVQLNETLRRNNRLSNSTGRLTWT-LDPKIEPDVGEWAFWETKKNFSQQLHGENLHFQIL 312

Query: 342 HAHDARATDQQLMSYIKPSISNTPPAYAEARDSTAGQIKMNNFDLNDIYIDSDDGIEDLE 401
             H   ++DQ     ++  IS  PPA       T     ++          S  G+ + E
Sbjct: 313 STHTNNSSDQSPAGTVQGKISYHPPANNSELVPTDSPPVVSVLTAGRTEEMSTQGLTNGE 372

Query: 402 RLPG-TTNHVTSSLDYPWTQQDSHQSSPPQTSRNSESGSAHSPSSSTGE 449
            + G T N +T+++    T      ++ P    N+ +    SP S++ E
Sbjct: 373 TITGFTANPMTTTIAPSPTMTSEVDNNVPSEQPNNTASIEDSPPSASNE 421


>RA21_MOUSE (Q61550) Double-strand-break repair protein rad21
           homolog (Pokeweed agglutinin-binding protein 29) (PW29)
           (SCC1 homolog)
          Length = 635

 Score = 34.7 bits (78), Expect = 1.3
 Identities = 29/138 (21%), Positives = 58/138 (42%), Gaps = 11/138 (7%)

Query: 285 NNLSNILREPENLLREGGSSRESEMVPTLLSNGSQGSPTDIRQHQTVSMNKMQQEVVH-- 342
           N+  +   +   ++REG +  + +M+ +  ++     P     +    MN ++ E  +  
Sbjct: 158 NDFGDFGMDDREIMREGSAFEDDDMLVSTSASNLLLEPEQSTSNLNEKMNHLEYEDQYKD 217

Query: 343 -----AHDARATDQQLMSYIKPSISNTPPAYAEARDSTAGQIKMNNFDLNDIYI----DS 393
                 +D    D +L+S     I + PPA +EA      Q   ++ D +D       DS
Sbjct: 218 DNFGEGNDGGILDDKLISNNDGGIFDDPPALSEAGVMLPEQPAHDDMDEDDNGSLGGPDS 277

Query: 394 DDGIEDLERLPGTTNHVT 411
            D ++ +E +P  T+  T
Sbjct: 278 PDSVDPVEPMPTMTDQTT 295


>IKBE_MOUSE (O54910) NF-kappaB inhibitor epsilon (NF-kappa-BIE)
           (I-kappa-B-epsilon) (IkappaBepsilon) (IKB-epsilon)
           (IKB-E)
          Length = 364

 Score = 34.7 bits (78), Expect = 1.3
 Identities = 41/129 (31%), Positives = 62/129 (47%), Gaps = 25/129 (19%)

Query: 767 HPSLDLALSE---MGLLHRAVRRNSKQLVELLLTY-----VPENISNE------VRPEGK 812
           HP LDL L     +  LH A  + ++ L+ELLL       V E  S +      V  + +
Sbjct: 223 HP-LDLQLKNWQGLACLHIATLQRNQPLIELLLQNGADIDVQEGTSGKTALHLAVETQER 281

Query: 813 ALVEGEKQSFLFRPDAAGPAGLTPLHIAAGKDGSEDVLDALTNDPCMVGIEA-WKNARDS 871
           +LV+   Q+   R DA    G TPLH+AAG+      L+++++  C  G ++   N  D 
Sbjct: 282 SLVQFLLQAGA-RVDARMLNGCTPLHLAAGRG-----LNSISSTLCEAGADSLLLNVED- 334

Query: 872 TGSTPEDYA 880
              TP+D A
Sbjct: 335 --ETPQDLA 341


>ANK2_HUMAN (Q01484) Ankyrin 2 (Brain ankyrin) (Ankyrin B) (Ankyrin,
           nonerythroid)
          Length = 3924

 Score = 34.3 bits (77), Expect = 1.7
 Identities = 36/129 (27%), Positives = 54/129 (40%), Gaps = 17/129 (13%)

Query: 780 LHRAVRRNSKQLVELLLTYVPENISNE-------VRPEGKALVEGEKQS--FLFRPDAAG 830
           L+ A + N   +V+ LL    EN +N+         P   AL +G  Q+   L   D  G
Sbjct: 134 LYMAAQENHIDVVKYLL----ENGANQSTATEDGFTPLAVALQQGHNQAVAILLENDTKG 189

Query: 831 PAGLTPLHIAAGKDGSEDVLDALTND-PCMVGIEAWKNARDSTGSTPEDYARLRGHYTYI 889
              L  LHIAA KD ++     L ND    V  +   N    +G TP     +  HY  +
Sbjct: 190 KVRLPALHIAARKDDTKSAALLLQNDHNADVQSKMMVNRTTESGFTP---LHIAAHYGNV 246

Query: 890 HLVQKKINK 898
           ++    +N+
Sbjct: 247 NVATLLLNR 255


>ANK1_MOUSE (Q02357) Ankyrin 1 (Erythrocyte ankyrin)
          Length = 1862

 Score = 34.3 bits (77), Expect = 1.7
 Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 15/124 (12%)

Query: 780 LHRAVRRNSKQLVELLLTY-VPENISNE--VRPEGKALVEGEKQ--SFLFRPDAAGPAGL 834
           L+ A + N  ++V+ LL     +N++ E    P   AL +G +   + L      G   L
Sbjct: 111 LYMAAQENHLEVVKFLLENGANQNVATEDGFTPLAVALQQGHENVVAHLINYGTKGKVRL 170

Query: 835 TPLHIAAGKDGSEDVLDALTNDPCMVGIEAWKNARDSTGSTPEDYARLRGHYTYIHLVQK 894
             LHIAA  D +      L NDP         +    TG TP     +  HY  +++ Q 
Sbjct: 171 PALHIAARNDDTRTAAVLLQNDPN-------PDVLSKTGFTP---LHIAAHYENLNVAQL 220

Query: 895 KINK 898
            +N+
Sbjct: 221 LLNR 224


>ANK1_HUMAN (P16157) Ankyrin 1 (Erythrocyte ankyrin) (Ankyrin R)
          Length = 1880

 Score = 34.3 bits (77), Expect = 1.7
 Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 15/124 (12%)

Query: 780 LHRAVRRNSKQLVELLLTY-VPENISNE--VRPEGKALVEGEKQ--SFLFRPDAAGPAGL 834
           L+ A + N  ++V+ LL     +N++ E    P   AL +G +   + L      G   L
Sbjct: 114 LYMAAQENHLEVVKFLLENGANQNVATEDGFTPLAVALQQGHENVVAHLINYGTKGKVRL 173

Query: 835 TPLHIAAGKDGSEDVLDALTNDPCMVGIEAWKNARDSTGSTPEDYARLRGHYTYIHLVQK 894
             LHIAA  D +      L NDP         +    TG TP     +  HY  +++ Q 
Sbjct: 174 PALHIAARNDDTRTAAVLLQNDPN-------PDVLSKTGFTP---LHIAAHYENLNVAQL 223

Query: 895 KINK 898
            +N+
Sbjct: 224 LLNR 227


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.317    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,088,463
Number of Sequences: 164201
Number of extensions: 5359837
Number of successful extensions: 13796
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 13720
Number of HSP's gapped (non-prelim): 108
length of query: 1003
length of database: 59,974,054
effective HSP length: 120
effective length of query: 883
effective length of database: 40,269,934
effective search space: 35558351722
effective search space used: 35558351722
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 71 (32.0 bits)


Lotus: description of TM0158.4