BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0158.2
(125 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
APG8_YEAST (P38182) Autophagy protein 8 [Contains: Apg8FG] 135 2e-32
SYRP_LACBI (P87068) Symbiosis-related protein 129 2e-30
GRL2_RAT (P60522) Gamma-aminobutyric acid receptor-associated pr... 117 3e-27
GRL2_MOUSE (P60521) Gamma-aminobutyric acid receptor-associated ... 117 3e-27
GRL2_HUMAN (P60520) Gamma-aminobutyric acid receptor-associated ... 117 3e-27
GRL2_BOVIN (P60519) Gamma-aminobutyric acid receptor-associated ... 117 3e-27
GRL1_MOUSE (Q8R3R8) Gamma-aminobutyric acid receptor-associated ... 113 9e-26
GRL1_HUMAN (Q9H0R8) Gamma-aminobutyric acid receptor-associated ... 113 9e-26
GRL1_CAVPO (P60518) Gamma-aminobutyric acid receptor-associated ... 113 9e-26
GRL1_BOVIN (Q8HYB6) Gamma-aminobutyric acid receptor-associated ... 112 1e-25
LGG1_CAEEL (Q09490) Protein lgg-1 112 2e-25
GRL3_HUMAN (Q9BY60) Gamma-aminobutyric acid receptor-associated ... 107 5e-24
GBAP_RAT (P60517) Gamma-aminobutyric acid receptor associated pr... 106 8e-24
GBAP_RABIT (Q8MK68) Gamma-aminobutyric acid receptor associated ... 106 8e-24
GBAP_MOUSE (Q9DCD6) Gamma-aminobutyric acid receptor associated ... 106 8e-24
GBAP_HUMAN (O95166) Gamma-aminobutyric acid receptor associated ... 106 8e-24
MPL3_RAT (Q62625) Microtubule-associated proteins 1A/1B light ch... 92 3e-19
MPL3_MOUSE (Q9CQV6) Microtubule-associated proteins 1A/1B light ... 92 3e-19
MP3B_HUMAN (Q9GZQ8) Microtubule-associated proteins 1A/1B light ... 92 3e-19
MPL3_BOVIN (O41515) Microtubule-associated proteins 1A/1B light ... 88 3e-18
>APG8_YEAST (P38182) Autophagy protein 8 [Contains: Apg8FG]
Length = 117
Score = 135 bits (339), Expect = 2e-32
Identities = 59/114 (51%), Positives = 87/114 (75%)
Query: 5 SSFKDEFTFDQRLEESREIIAKYPDRVPVIVERYLKSDLPELGKRKYLVPRDLSVGHFIH 64
S+FK E+ F++R ES I ++ +R+PVI E+ KSD+PE+ KRKYLVP DL+VG F++
Sbjct: 3 STFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVY 62
Query: 65 ILSSRLSLPPGKALFVFVKNTLPQTASMMDSVYRSFRDEDGFLYMYYSTEKTFG 118
++ R+ LPP KA+F+FV +TLP TA++M ++Y+ +D+DGFLY+ YS E TFG
Sbjct: 63 VIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 116
>SYRP_LACBI (P87068) Symbiosis-related protein
Length = 184
Score = 129 bits (323), Expect = 2e-30
Identities = 57/114 (50%), Positives = 81/114 (71%)
Query: 5 SSFKDEFTFDQRLEESREIIAKYPDRVPVIVERYLKSDLPELGKRKYLVPRDLSVGHFIH 64
S FKDE F++R E+ I KYPDR+PVI E+ ++D+P + K+KYLVP DL+VG F++
Sbjct: 3 SKFKDEHPFEKRKAEAERIRQKYPDRIPVICEKADRTDIPTIDKKKYLVPSDLTVGQFVY 62
Query: 65 ILSSRLSLPPGKALFVFVKNTLPQTASMMDSVYRSFRDEDGFLYMYYSTEKTFG 118
++ R+ L P KA+F+FV LP TA++M ++Y +DED FLY+ YS E TFG
Sbjct: 63 VIRKRIKLAPEKAIFIFVDEVLPPTAALMSAIYEEHKDEDNFLYVSYSGENTFG 116
>GRL2_RAT (P60522) Gamma-aminobutyric acid receptor-associated
protein-like 2 (GABA(A) receptor-associated protein-like
2) (Ganglioside expression factor 2) (GEF-2)
Length = 117
Score = 117 bits (294), Expect = 3e-27
Identities = 56/112 (50%), Positives = 78/112 (69%)
Query: 7 FKDEFTFDQRLEESREIIAKYPDRVPVIVERYLKSDLPELGKRKYLVPRDLSVGHFIHIL 66
FK++ + + R ES +I AKYPDRVPVIVE+ S + ++ KRKYLVP D++V F+ I+
Sbjct: 5 FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWII 64
Query: 67 SSRLSLPPGKALFVFVKNTLPQTASMMDSVYRSFRDEDGFLYMYYSTEKTFG 118
R+ LP KA+F+FV T+PQ++ M +Y +DEDGFLY+ YS E TFG
Sbjct: 65 RKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
>GRL2_MOUSE (P60521) Gamma-aminobutyric acid receptor-associated
protein-like 2 (GABA(A) receptor-associated protein-like
2)
Length = 117
Score = 117 bits (294), Expect = 3e-27
Identities = 56/112 (50%), Positives = 78/112 (69%)
Query: 7 FKDEFTFDQRLEESREIIAKYPDRVPVIVERYLKSDLPELGKRKYLVPRDLSVGHFIHIL 66
FK++ + + R ES +I AKYPDRVPVIVE+ S + ++ KRKYLVP D++V F+ I+
Sbjct: 5 FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWII 64
Query: 67 SSRLSLPPGKALFVFVKNTLPQTASMMDSVYRSFRDEDGFLYMYYSTEKTFG 118
R+ LP KA+F+FV T+PQ++ M +Y +DEDGFLY+ YS E TFG
Sbjct: 65 RKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
>GRL2_HUMAN (P60520) Gamma-aminobutyric acid receptor-associated
protein-like 2 (GABA(A) receptor-associated protein-like
2) (Ganglioside expression factor 2) (GEF-2) (General
protein transport factor p16) (MAP1 light chain 3
related protein)
Length = 117
Score = 117 bits (294), Expect = 3e-27
Identities = 56/112 (50%), Positives = 78/112 (69%)
Query: 7 FKDEFTFDQRLEESREIIAKYPDRVPVIVERYLKSDLPELGKRKYLVPRDLSVGHFIHIL 66
FK++ + + R ES +I AKYPDRVPVIVE+ S + ++ KRKYLVP D++V F+ I+
Sbjct: 5 FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWII 64
Query: 67 SSRLSLPPGKALFVFVKNTLPQTASMMDSVYRSFRDEDGFLYMYYSTEKTFG 118
R+ LP KA+F+FV T+PQ++ M +Y +DEDGFLY+ YS E TFG
Sbjct: 65 RKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
>GRL2_BOVIN (P60519) Gamma-aminobutyric acid receptor-associated
protein-like 2 (GABA(A) receptor-associated protein-like
2) (Ganglioside expression factor 2) (GEF-2) (General
protein transport factor p16) (Golgi-associated ATPase
enhancer of 16 kDa) (GAT
Length = 117
Score = 117 bits (294), Expect = 3e-27
Identities = 56/112 (50%), Positives = 78/112 (69%)
Query: 7 FKDEFTFDQRLEESREIIAKYPDRVPVIVERYLKSDLPELGKRKYLVPRDLSVGHFIHIL 66
FK++ + + R ES +I AKYPDRVPVIVE+ S + ++ KRKYLVP D++V F+ I+
Sbjct: 5 FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWII 64
Query: 67 SSRLSLPPGKALFVFVKNTLPQTASMMDSVYRSFRDEDGFLYMYYSTEKTFG 118
R+ LP KA+F+FV T+PQ++ M +Y +DEDGFLY+ YS E TFG
Sbjct: 65 RKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
>GRL1_MOUSE (Q8R3R8) Gamma-aminobutyric acid receptor-associated
protein-like 1 (GABA(A) receptor-associated protein-like
1) (Glandular epithelial cell protein 1) (GEC-1)
Length = 117
Score = 113 bits (282), Expect = 9e-26
Identities = 54/112 (48%), Positives = 75/112 (66%)
Query: 7 FKDEFTFDQRLEESREIIAKYPDRVPVIVERYLKSDLPELGKRKYLVPRDLSVGHFIHIL 66
+K++ F+ R +E +I KYPDRVPVIVE+ K+ +P+L KRKYLVP DL+VG F ++
Sbjct: 5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLI 64
Query: 67 SSRLSLPPGKALFVFVKNTLPQTASMMDSVYRSFRDEDGFLYMYYSTEKTFG 118
R+ L P ALF FV NT+P T++ M +Y +ED FLY+ YS E +G
Sbjct: 65 RKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116
>GRL1_HUMAN (Q9H0R8) Gamma-aminobutyric acid receptor-associated
protein-like 1 (GABA(A) receptor-associated protein-like
1) (Glandular epithelial cell protein 1) (GEC-1) (Early
estrogen-regulated protein)
Length = 117
Score = 113 bits (282), Expect = 9e-26
Identities = 54/112 (48%), Positives = 75/112 (66%)
Query: 7 FKDEFTFDQRLEESREIIAKYPDRVPVIVERYLKSDLPELGKRKYLVPRDLSVGHFIHIL 66
+K++ F+ R +E +I KYPDRVPVIVE+ K+ +P+L KRKYLVP DL+VG F ++
Sbjct: 5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLI 64
Query: 67 SSRLSLPPGKALFVFVKNTLPQTASMMDSVYRSFRDEDGFLYMYYSTEKTFG 118
R+ L P ALF FV NT+P T++ M +Y +ED FLY+ YS E +G
Sbjct: 65 RKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116
>GRL1_CAVPO (P60518) Gamma-aminobutyric acid receptor-associated
protein-like 1 (GABA(A) receptor-associated protein-like
1) (Glandular epithelial cell protein 1)
Length = 117
Score = 113 bits (282), Expect = 9e-26
Identities = 54/112 (48%), Positives = 75/112 (66%)
Query: 7 FKDEFTFDQRLEESREIIAKYPDRVPVIVERYLKSDLPELGKRKYLVPRDLSVGHFIHIL 66
+K++ F+ R +E +I KYPDRVPVIVE+ K+ +P+L KRKYLVP DL+VG F ++
Sbjct: 5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLI 64
Query: 67 SSRLSLPPGKALFVFVKNTLPQTASMMDSVYRSFRDEDGFLYMYYSTEKTFG 118
R+ L P ALF FV NT+P T++ M +Y +ED FLY+ YS E +G
Sbjct: 65 RKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116
>GRL1_BOVIN (Q8HYB6) Gamma-aminobutyric acid receptor-associated
protein-like 1 (GABA(A) receptor-associated protein-like
1) (Fragment)
Length = 111
Score = 112 bits (281), Expect = 1e-25
Identities = 55/107 (51%), Positives = 73/107 (67%)
Query: 13 FDQRLEESREIIAKYPDRVPVIVERYLKSDLPELGKRKYLVPRDLSVGHFIHILSSRLSL 72
F+ R +E +I KYPDRVPVIVE+ K+ +P+L KRKYLVP DL+VG F ++ R+ L
Sbjct: 4 FEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHL 63
Query: 73 PPGKALFVFVKNTLPQTASMMDSVYRSFRDEDGFLYMYYSTEKTFGS 119
P ALF FV NT+P T++ M +Y +ED FLY+ YS E T+GS
Sbjct: 64 RPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESTYGS 110
>LGG1_CAEEL (Q09490) Protein lgg-1
Length = 123
Score = 112 bits (279), Expect = 2e-25
Identities = 54/113 (47%), Positives = 75/113 (65%)
Query: 6 SFKDEFTFDQRLEESREIIAKYPDRVPVIVERYLKSDLPELGKRKYLVPRDLSVGHFIHI 65
++K+E F++R E +I KYPDR+PVIVE+ KS L +L K+KYLVP DL+VG F +
Sbjct: 4 AYKEENNFEKRRAEGDKIRRKYPDRIPVIVEKAPKSKLHDLDKKKYLVPSDLTVGQFYFL 63
Query: 66 LSSRLSLPPGKALFVFVKNTLPQTASMMDSVYRSFRDEDGFLYMYYSTEKTFG 118
+ R+ L P ALF FV N +PQT + M +Y+ +ED FLY+ YS E +G
Sbjct: 64 IRKRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHHEEDLFLYIAYSDESVYG 116
>GRL3_HUMAN (Q9BY60) Gamma-aminobutyric acid receptor-associated
protein-like 3 (GABA(A) receptor-associated protein-like
3)
Length = 117
Score = 107 bits (267), Expect = 5e-24
Identities = 51/112 (45%), Positives = 73/112 (64%)
Query: 7 FKDEFTFDQRLEESREIIAKYPDRVPVIVERYLKSDLPELGKRKYLVPRDLSVGHFIHIL 66
+K+ F+ R +E +I KYPDRVP+IVE+ K+ +P+L +RKYLVP DL+ G F ++
Sbjct: 5 YKEVHPFEYRKKEGEKIRKKYPDRVPLIVEKAPKARVPDLDRRKYLVPSDLTDGQFYLLI 64
Query: 67 SSRLSLPPGKALFVFVKNTLPQTASMMDSVYRSFRDEDGFLYMYYSTEKTFG 118
R+ L P ALF FV NT+P T++ M +Y +ED FLY+ YS E +G
Sbjct: 65 RKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDSHEEDDFLYVAYSNESVYG 116
>GBAP_RAT (P60517) Gamma-aminobutyric acid receptor associated
protein (GABA(A) receptor-associated protein)
Length = 117
Score = 106 bits (265), Expect = 8e-24
Identities = 51/112 (45%), Positives = 73/112 (64%)
Query: 7 FKDEFTFDQRLEESREIIAKYPDRVPVIVERYLKSDLPELGKRKYLVPRDLSVGHFIHIL 66
+K+E F++R E +I KYPDRVPVIVE+ K+ + +L K+KYLVP DL+VG F ++
Sbjct: 5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLI 64
Query: 67 SSRLSLPPGKALFVFVKNTLPQTASMMDSVYRSFRDEDGFLYMYYSTEKTFG 118
R+ L ALF FV N +P T++ M +Y+ +ED FLY+ YS E +G
Sbjct: 65 RKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116
>GBAP_RABIT (Q8MK68) Gamma-aminobutyric acid receptor associated
protein (GABA(A) receptor-associated protein)
Length = 117
Score = 106 bits (265), Expect = 8e-24
Identities = 51/112 (45%), Positives = 73/112 (64%)
Query: 7 FKDEFTFDQRLEESREIIAKYPDRVPVIVERYLKSDLPELGKRKYLVPRDLSVGHFIHIL 66
+K+E F++R E +I KYPDRVPVIVE+ K+ + +L K+KYLVP DL+VG F ++
Sbjct: 5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLI 64
Query: 67 SSRLSLPPGKALFVFVKNTLPQTASMMDSVYRSFRDEDGFLYMYYSTEKTFG 118
R+ L ALF FV N +P T++ M +Y+ +ED FLY+ YS E +G
Sbjct: 65 RKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116
>GBAP_MOUSE (Q9DCD6) Gamma-aminobutyric acid receptor associated
protein (GABA(A) receptor-associated protein)
Length = 117
Score = 106 bits (265), Expect = 8e-24
Identities = 51/112 (45%), Positives = 73/112 (64%)
Query: 7 FKDEFTFDQRLEESREIIAKYPDRVPVIVERYLKSDLPELGKRKYLVPRDLSVGHFIHIL 66
+K+E F++R E +I KYPDRVPVIVE+ K+ + +L K+KYLVP DL+VG F ++
Sbjct: 5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLI 64
Query: 67 SSRLSLPPGKALFVFVKNTLPQTASMMDSVYRSFRDEDGFLYMYYSTEKTFG 118
R+ L ALF FV N +P T++ M +Y+ +ED FLY+ YS E +G
Sbjct: 65 RKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116
>GBAP_HUMAN (O95166) Gamma-aminobutyric acid receptor associated
protein (GABA(A) receptor-associated protein) (MM46)
(HT004)
Length = 117
Score = 106 bits (265), Expect = 8e-24
Identities = 51/112 (45%), Positives = 73/112 (64%)
Query: 7 FKDEFTFDQRLEESREIIAKYPDRVPVIVERYLKSDLPELGKRKYLVPRDLSVGHFIHIL 66
+K+E F++R E +I KYPDRVPVIVE+ K+ + +L K+KYLVP DL+VG F ++
Sbjct: 5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLI 64
Query: 67 SSRLSLPPGKALFVFVKNTLPQTASMMDSVYRSFRDEDGFLYMYYSTEKTFG 118
R+ L ALF FV N +P T++ M +Y+ +ED FLY+ YS E +G
Sbjct: 65 RKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116
>MPL3_RAT (Q62625) Microtubule-associated proteins 1A/1B light chain
3 (MAP1A/MAP1B LC3) (MAP1A/1B light chain 3)
Length = 141
Score = 91.7 bits (226), Expect = 3e-19
Identities = 47/116 (40%), Positives = 76/116 (65%), Gaps = 2/116 (1%)
Query: 6 SFKDEFTFDQRLEESREIIAKYPDRVPVIVERYL-KSDLPELGKRKYLVPRDLSVGHFIH 64
+FK +F+QR+E+ R I ++P ++PVI+ERY + LP L K K+LVP +++ I
Sbjct: 5 TFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIK 64
Query: 65 ILSSRLSLPPGKALFVFVK-NTLPQTASMMDSVYRSFRDEDGFLYMYYSTEKTFGS 119
I+ RL L +A F+ V +++ ++ + VY S RDEDGFLYM Y++++TFG+
Sbjct: 65 IIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFGT 120
>MPL3_MOUSE (Q9CQV6) Microtubule-associated proteins 1A/1B light
chain 3 (MAP1A/MAP1B LC3) (MAP1A/1B light chain 3)
Length = 124
Score = 91.7 bits (226), Expect = 3e-19
Identities = 47/116 (40%), Positives = 76/116 (65%), Gaps = 2/116 (1%)
Query: 6 SFKDEFTFDQRLEESREIIAKYPDRVPVIVERYL-KSDLPELGKRKYLVPRDLSVGHFIH 64
+FK +F+QR+E+ R I ++P ++PVI+ERY + LP L K K+LVP +++ I
Sbjct: 5 TFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIK 64
Query: 65 ILSSRLSLPPGKALFVFVK-NTLPQTASMMDSVYRSFRDEDGFLYMYYSTEKTFGS 119
I+ RL L +A F+ V +++ ++ + VY S RDEDGFLYM Y++++TFG+
Sbjct: 65 IIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFGT 120
>MP3B_HUMAN (Q9GZQ8) Microtubule-associated proteins 1A/1B light
chain 3B (MAP1A/MAP1B LC3 B) (MAP1A/1B light chain 3 B)
Length = 124
Score = 91.7 bits (226), Expect = 3e-19
Identities = 47/115 (40%), Positives = 75/115 (64%), Gaps = 2/115 (1%)
Query: 6 SFKDEFTFDQRLEESREIIAKYPDRVPVIVERYL-KSDLPELGKRKYLVPRDLSVGHFIH 64
+FK TF+QR+E+ R I ++P ++PVI+ERY + LP L K K+LVP +++ I
Sbjct: 5 TFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIK 64
Query: 65 ILSSRLSLPPGKALFVFVK-NTLPQTASMMDSVYRSFRDEDGFLYMYYSTEKTFG 118
I+ RL L +A F+ V +++ ++ + VY S +DEDGFLYM Y++++TFG
Sbjct: 65 IIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 119
>MPL3_BOVIN (O41515) Microtubule-associated proteins 1A/1B light
chain 3 (MAP1A/MAP1B LC3) (MAP1A/1B light chain 3)
(Fragment)
Length = 119
Score = 88.2 bits (217), Expect = 3e-18
Identities = 46/115 (40%), Positives = 74/115 (64%), Gaps = 2/115 (1%)
Query: 6 SFKDEFTFDQRLEESREIIAKYPDRVPVIVERYL-KSDLPELGKRKYLVPRDLSVGHFIH 64
+FK TF+QR+E+ R I ++P ++PVI+ERY + LP L K K+LVP +++ I
Sbjct: 5 TFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIK 64
Query: 65 ILSSRLSLPPGKALFVFVK-NTLPQTASMMDSVYRSFRDEDGFLYMYYSTEKTFG 118
I+ RL L +A F+ V +++ ++ + VY S +DEDGFLY Y++++TFG
Sbjct: 65 IIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYTVYASQETFG 119
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.322 0.140 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,347,896
Number of Sequences: 164201
Number of extensions: 596743
Number of successful extensions: 1491
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1443
Number of HSP's gapped (non-prelim): 46
length of query: 125
length of database: 59,974,054
effective HSP length: 101
effective length of query: 24
effective length of database: 43,389,753
effective search space: 1041354072
effective search space used: 1041354072
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0158.2