BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0154.14
         (906 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

POL2_MOUSE (P11369) Retrovirus-related Pol polyprotein [Contains...   149  3e-35
LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog              125  7e-28
M310_ARATH (P93295) Hypothetical mitochondrial protein AtMg00310...   121  7e-27
LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog              120  2e-26
YTX2_XENLA (P14381) Transposon TX1 hypothetical 149 kDa protein ...   118  6e-26
MC50_ARATH (P92555) Hypothetical mitochondrial protein AtMg01250...    83  4e-15
POLR_DROME (P16423) Retrovirus-related Pol polyprotein from type...    71  1e-11
PO21_NASVI (Q03278) Retrovirus-related Pol polyprotein from type...    65  1e-09
PO23_POPJA (Q05118) Retrovirus-related Pol polyprotein from type...    60  3e-08
PO22_POPJA (Q03274) Retrovirus-related Pol polyprotein from type...    55  6e-07
YMH5_CAEEL (P34472) Hypothetical protein F58A4.5 in chromosome III     49  6e-05
Y2R2_DROME (P16425) Hypothetical 115 kDa protein in type I retro...    45  7e-04
PO21_SCICO (Q03279) Retrovirus-related Pol polyprotein from type...    44  0.001
RTJK_DROFU (P21329) RNA-directed DNA polymerase from mobile elem...    38  0.11
YO84_CAEEL (P34620) Hypothetical protein ZK1236.4 in chromosome III    34  1.5
RTJK_DROME (P21328) RNA-directed DNA polymerase from mobile elem...    34  1.5
ADFP_BOVIN (Q9TUM6) Adipophilin (Adipose differentiation-related...    33  4.5
CHSY_PINST (O65872) Chalcone synthase (EC 2.3.1.74) (Naringenin-...    32  5.8
VE05_VARV (Q01483) Protein E5                                          32  7.6
RPOB_ASTLO (P27059) DNA-directed RNA polymerase beta chain (EC 2...    32  7.6

>POL2_MOUSE (P11369) Retrovirus-related Pol polyprotein [Contains:
           Reverse transcriptase (EC 2.7.7.49); Endonuclease]
          Length = 1300

 Score =  149 bits (376), Expect = 3e-35
 Identities = 130/449 (28%), Positives = 205/449 (44%), Gaps = 31/449 (6%)

Query: 4   EALFQMHPTK-APGCDGLPALFYQKFWHIIGDDVSHFCLQVLH-----GDIS*SIINKTL 57
           EA+    PTK +PG DG  A FYQ F     +D+     ++ H     G +  S    T 
Sbjct: 485 EAVINSLPTKKSPGPDGFSAEFYQTF----KEDLIPILHKLFHKIEVEGTLPNSFYEAT- 539

Query: 58  LVLIPKVKK-PMHANQFRLISLCNVIFKIITKTLANRLKIILPDLICESQTAFVPGRLIT 116
           + LIPK +K P     FR ISL N+  KI+ K LANR++  +  +I   Q  F+PG    
Sbjct: 540 ITLIPKPQKDPTKIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGW 599

Query: 117 DNALVAFECFHYMKKKISGCNGVMALKLDMSKAYDRVEWPFLASVLQQMGFPASWVSLIM 176
            N   +    HY+ K        M + LD  KA+D+++ PF+  VL++ G    ++++I 
Sbjct: 600 FNIRKSINVIHYINKLKD--KNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIK 657

Query: 177 TCVSTVDFSIMLNGAPQEPFQPHRGLRQGDPLSPYLFILCGEVFSALINKAVLASSLHGI 236
              S    +I +NG   E      G RQG PLSPYLF +  EV +  I +      + GI
Sbjct: 658 AIYSKPVANIKVNGEKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQ---QKEIKGI 714

Query: 237 KIARTAPVISHLLFADDSVIFARATVQEALSIKAILASYEQASGQVINLDKSKLSCSRNV 296
           +I +    IS  L ADD +++          +  ++ S+ +  G  IN +KS ++     
Sbjct: 715 QIGKEEVKIS--LLADDMIVYISDPKNSTRELLNLINSFGEVVGYKINSNKS-MAFLYTK 771

Query: 297 PDDCFHELRQLLTVKAVESYDKYLGLPTIIGKSK---TQIFNFVKERVWKKLKGWKERSL 353
                 E+R+      V +  KYLG+ T+  + K    + F  +K+ + + L+ WK+   
Sbjct: 772 NKQAEKEIRETTPFSIVTNNIKYLGV-TLTKEVKDLYDKNFKSLKKEIKEDLRRWKDLPC 830

Query: 354 YRAGREVLVK--AVAHAIPSYVMSCFLLPDGLCNQIEGMISRFYWGGDVTRRGMHCLSWK 411
              GR  +VK   +  AI  +      +P    N++EG I +F W     R     L  K
Sbjct: 831 SWIGRINIVKMAILPKAIYRFNAIPIKIPTQFFNELEGAICKFVWNNKKPRIAKSLLKDK 890

Query: 412 DLCKAKDNGRLGFRDFKMFNSALVAKNWW 440
                + +G +   D K++  A+V K  W
Sbjct: 891 -----RTSGGITMPDLKLYYRAIVIKTAW 914


>LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog
          Length = 1260

 Score =  125 bits (313), Expect = 7e-28
 Identities = 112/452 (24%), Positives = 191/452 (41%), Gaps = 18/452 (3%)

Query: 1   DVEEALFQMHPTKAPGCDGLPALFYQKFWHIIGDDVSHFCLQVLHGDIS*SIINKTLLVL 60
           ++   +  +   K+PG DG  + FYQ F   +   + +    +    I  +   +  + L
Sbjct: 456 EIASTIQNLPKKKSPGPDGFTSEFYQTFKEELVPILLNLFQNIEKEGILPNTFYEANITL 515

Query: 61  IPKV-KKPMHANQFRLISLCNVIFKIITKTLANRLKIILPDLICESQTAFVPGRLITDNA 119
           IPK  K P     +R ISL N+  KI+ K L NR++  +  +I   Q  F+PG     N 
Sbjct: 516 IPKPGKDPTRKENYRPISLMNIDAKILNKILTNRIQQHIKKIIHHDQVGFIPGSQGWFNI 575

Query: 120 LVAFECFHYMKKKISGCNGVMALKLDMSKAYDRVEWPFLASVLQQMGFPASWVSLIMTCV 179
             +     ++ K  +  +  M L +D  KA+D ++ PF+   L+++G   +++ LI    
Sbjct: 576 RKSINVIQHINKLKNKDH--MILSIDAEKAFDNIQHPFMIRTLKKIGIEGTFLKLIEAIY 633

Query: 180 STVDFSIMLNGAPQEPFQPHRGLRQGDPLSPYLFILCGEVFSALINKAVLASSLHGIKIA 239
           S    +I+LNG   + F    G RQG PLSP LF +  EV +  I +     ++ GI I 
Sbjct: 634 SKPTANIILNGVKLKSFPLRSGTRQGCPLSPLLFNIVMEVLAIAIRE---EKAIKGIHIG 690

Query: 240 RTAPVISHLLFADDSVIFARATVQEALSIKAILASYEQASGQVINLDKSKLSCSRNVPDD 299
                +S  LFADD +++   T      +  ++  Y   SG  IN  KS      N  + 
Sbjct: 691 SEEIKLS--LFADDMIVYLENTRDSTTKLLEVIKEYSNVSGYKINTHKSVAFIYTN-NNQ 747

Query: 300 CFHELRQLLTVKAVESYDKYLG--LPTIIGKSKTQIFNFVKERVWKKLKGWKERSLYRAG 357
               ++  +    V    KYLG  L   +     + +  +++ + + +  WK       G
Sbjct: 748 AEKTVKDSIPFTVVPKKMKYLGVYLTKDVKDLYKENYETLRKEIAEDVNKWKNIPCSWLG 807

Query: 358 REVLVK--AVAHAIPSYVMSCFLLPDGLCNQIEGMISRFYWGGDVTRRGMHCLSWKDLCK 415
           R  +VK   +  AI ++       P      +E +I  F W     +     LS K+   
Sbjct: 808 RINIVKMSILPKAIYNFNAIPIKAPLSYFKDLEKIILHFIWNQKKPQIAKTLLSNKNKA- 866

Query: 416 AKDNGRLGFRDFKMFNSALVAKNWWRIKSNPE 447
               G +   D +++  ++V K  W    N E
Sbjct: 867 ----GGITLPDLRLYYKSIVIKTAWYWHKNRE 894


>M310_ARATH (P93295) Hypothetical mitochondrial protein AtMg00310
           (ORF154)
          Length = 154

 Score =  121 bits (304), Expect = 7e-27
 Identities = 57/143 (39%), Positives = 86/143 (59%), Gaps = 1/143 (0%)

Query: 368 AIPSYVMSCFLLPDGLCNQIEGMISRFYWGGDVTRRGMHCLSWKDLCKAK-DNGRLGFRD 426
           A+P Y MSCF L   LC ++   ++ F+W     +R +  ++W+ LCK+K D+G LGFRD
Sbjct: 2   ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRD 61

Query: 427 FKMFNSALVAKNWWRIKSNPESLMGKVYRAVYFPRGTIRGAKRGYRPSYAWSSIMRSGEI 486
              FN AL+AK  +RI   P +L+ ++ R+ YFP  ++     G RPSYAW SI+   E+
Sbjct: 62  LGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGREL 121

Query: 487 FATGGMWNIGNGKSVKAWSDKWV 509
            + G +  IG+G   K W D+W+
Sbjct: 122 LSRGLLRTIGDGIHTKVWLDRWI 144


>LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog
          Length = 1259

 Score =  120 bits (300), Expect = 2e-26
 Identities = 116/487 (23%), Positives = 207/487 (41%), Gaps = 50/487 (10%)

Query: 1   DVEEALFQMHPTKAPGCDGLPALFYQKFWHIIGDDVSHFCLQVLHGDIS*SIINKTL--- 57
           ++E  +  +   K+PG +G  A FYQ++     +++  F L++        I+  +    
Sbjct: 456 EIEAIINSLPNKKSPGPEGFTAEFYQRY----KEELVPFLLKLFQSIEKEGILPNSFYEA 511

Query: 58  -LVLIPKVKKPMHANQ-FRLISLCNVIFKIITKTLANRLKIILPDLICESQTAFVPGRLI 115
            ++LIPK  +     + FR ISL N+  KI+ K LAN+++  +  LI   Q  F+P    
Sbjct: 512 SIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANQIQQHIKKLIHHDQVGFIPAMQG 571

Query: 116 TDNALVAFECFHYMKKKISGCNGVMALKLDMSKAYDRVEWPFLASVLQQMGFPASWVSLI 175
             N   +     ++ +        M + +D  KA+D+++ PF+   L ++G   +++ +I
Sbjct: 572 WFNIRKSINIIQHINRTKD--TNHMIISIDAEKAFDKIQQPFMLKPLNKLGIDGTYLKII 629

Query: 176 MTCVSTVDFSIMLNGAPQEPFQPHRGLRQGDPLSPYLFILCGEVFSALINKAVLASSLHG 235
                    +I+LNG   E      G RQG PLSP L  +  EV +  I +      + G
Sbjct: 630 RAIYDKPTANIILNGQKLEAPPLKTGTRQGCPLSPLLPNIVLEVLARAIRQ---EKEIKG 686

Query: 236 IKIARTAPVISHLLFADDSVIFARATVQEALSIKAILASYEQASGQVINLDKSK---LSC 292
           I++ +    +S  LFADD +++    +  A ++  +++++ + SG  IN+ KS+    + 
Sbjct: 687 IQLGKEEVKLS--LFADDMIVYLENPIVSAQNLLKLISNFSKVSGYKINVQKSQAFLYTN 744

Query: 293 SRNVPDDCFHELRQLLTVKAVESYDKYLGL------PTIIGKSKTQIFNFVKERVWKKLK 346
           +R        EL   +  K +    KYLG+        +  ++   + N +KE   K   
Sbjct: 745 NRQTESQIMSELPFTIASKRI----KYLGIQLTRDVKDLFKENYKPLLNEIKEDTNK--- 797

Query: 347 GWKERSLYRAGREVLVK--AVAHAIPSYVMSCFLLPDGLCNQIEGMISRFYWGGDVTRRG 404
            WK       GR  +VK   +   I  +      LP     ++E    +F W        
Sbjct: 798 -WKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRAHIA 856

Query: 405 MHCLSWKDLCKAKDNGRLGFRDFKMFNSALVAKNWWRIKSN----------PESLMGKVY 454
              LS K+       G +   DFK++  A V K  W    N          P  +M  +Y
Sbjct: 857 KSTLSQKNKA-----GGITLPDFKLYYKATVTKTAWYWYQNRDIDQWNRTEPSEIMPHIY 911

Query: 455 RAVYFPR 461
             + F +
Sbjct: 912 NYLIFDK 918


>YTX2_XENLA (P14381) Transposon TX1 hypothetical 149 kDa protein
           (ORF 2)
          Length = 1308

 Score =  118 bits (296), Expect = 6e-26
 Identities = 110/404 (27%), Positives = 185/404 (45%), Gaps = 20/404 (4%)

Query: 1   DVEEALFQMHPTKAPGCDGLPALFYQKFWHIIGDDVSHFCLQVLH-GDIS*SIINKTLLV 59
           ++ +AL  M   K+PG DGL   F+Q FW  +G D      +    G++  S   + +L 
Sbjct: 453 ELSQALRLMPHNKSPGLDGLTIEFFQFFWDTLGPDFHRVLTEAFKKGELPLSC-RRAVLS 511

Query: 60  LIPKVKKPMHANQFRLISLCNVIFKIITKTLANRLKIILPDLICESQTAFVPGRLITDNA 119
           L+PK         +R +SL +  +KI+ K ++ RLK +L ++I   Q+  VPGR I DN 
Sbjct: 512 LLPKKGDLRLIKNWRPVSLLSTDYKIVAKAISLRLKSVLAEVIHPDQSYTVPGRTIFDNV 571

Query: 120 LVAFECFHYMKKKISGCNGVMALKLDMSKAYDRVEWPFLASVLQQMGFPASWVSLIMTCV 179
            +  +  H+ ++  +G + +  L LD  KA+DRV+  +L   LQ   F   +V  + T  
Sbjct: 572 FLIRDLLHFARR--TGLS-LAFLSLDQEKAFDRVDHQYLIGTLQAYSFGPQFVGYLKTMY 628

Query: 180 STVDFSIMLNGAPQEPFQPHRGLRQGDPLSPYLFILCGEVFSALINKAVLASSLH--GIK 237
           ++ +  + +N +   P    RG+RQG PLS  L+ L  E F  L+ K +    L    ++
Sbjct: 629 ASAECLVKINWSLTAPLAFGRGVRQGCPLSGQLYSLAIEPFLCLLRKRLTGLVLKEPDMR 688

Query: 238 IARTAPVISHLLFADDSVIFARATVQEALSIKAILASYEQASGQVINLDKSKLSCSRNVP 297
           +  +A     +L A D V   RA  QE   +      Y  AS   IN  KS      ++ 
Sbjct: 689 VVLSAYADDVILVAQDLVDLERA--QECQEV------YAAASSARINWSKSSGLLEGSLK 740

Query: 298 DDCFHELRQLLTVKAVESYDKYLGLPTIIGK-SKTQIFNFVKERVWKKLKGWK--ERSLY 354
            D      + ++ ++     KYLG+     +   +Q F  ++E V  +L  WK   + L 
Sbjct: 741 VDFLPPAFRDISWES--KIIKYLGVYLSAEEYPVSQNFIELEECVLTRLGKWKGFAKVLS 798

Query: 355 RAGREVLVKAVAHAIPSYVMSCFLLPDGLCNQIEGMISRFYWGG 398
             GR +++  +  +   Y + C         +I+  +  F W G
Sbjct: 799 MRGRALVINQLVASQIWYRLICLSPTQEFIAKIQRRLLDFLWIG 842


>MC50_ARATH (P92555) Hypothetical mitochondrial protein AtMg01250
           (ORF102)
          Length = 122

 Score = 82.8 bits (203), Expect = 4e-15
 Identities = 40/68 (58%), Positives = 49/68 (71%)

Query: 187 MLNGAPQEPFQPHRGLRQGDPLSPYLFILCGEVFSALINKAVLASSLHGIKIARTAPVIS 246
           ++NGAPQ    P RGLRQGDPLSPYLFILC EV S L  +A     L GI+++  +P I+
Sbjct: 13  IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRIN 72

Query: 247 HLLFADDS 254
           HLLFADD+
Sbjct: 73  HLLFADDT 80


>POLR_DROME (P16423) Retrovirus-related Pol polyprotein from type II
           retrotransposable element R2DM [Contains: Protease (EC
           3.4.23.-); Reverse transcriptase (EC 2.7.7.49);
           Endonuclease]
          Length = 1057

 Score = 71.2 bits (173), Expect = 1e-11
 Identities = 75/279 (26%), Positives = 115/279 (40%), Gaps = 23/279 (8%)

Query: 59  VLIPKVKKPMHANQFRLISLCNVIFKIITKTLANRLKIILPDLICESQTAFVPGRLITDN 118
           V IPK         FR IS+ +V+ + +   LA RL   +       Q  F+P     DN
Sbjct: 401 VFIPKTVTAKRPQDFRPISVPSVLVRQLNAILATRLNSSIN--WDPRQRGFLPTDGCADN 458

Query: 119 ALVAFECFHYMKKKISGCNGVMALKLDMSKAYDRVEWPFLASVLQQMGFPASWVSLIMTC 178
           A +      +  K    C       LD+SKA+D +    +   L+  G P  +V  +   
Sbjct: 459 ATIVDLVLRHSHKHFRSC---YIANLDVSKAFDSLSHASIYDTLRAYGAPKGFVDYVQNT 515

Query: 179 VSTVDFSIMLNGAPQEPFQPHRGLRQGDPLSPYLFILCGEVFSALINKAVLASSLHGIKI 238
                 S+  +G   E F P RG++QGDPLSP LF L   V   L+    L S + G K+
Sbjct: 516 YEGGGTSLNGDGWSSEEFVPARGVKQGDPLSPILFNL---VMDRLLR--TLPSEI-GAKV 569

Query: 239 ARTAPVISHLLFADDSVIFARATVQEALSIKAILASYEQASGQVINLDKSKLSCSRNVPD 298
                + +   FADD V+FA   +   + +   L  +    G  +N DK      +  P 
Sbjct: 570 GNA--ITNAAAFADDLVLFAETRMGLQVLLDKTL-DFLSIVGLKLNADKCFTVGIKGQP- 625

Query: 299 DCFHELRQLLTVKAVESYDKYLGLPTIIGKSKTQIFNFV 337
                 +Q  TV   +S+  Y+G   I    +T  + ++
Sbjct: 626 ------KQKCTVLEAQSF--YVGSSEIPSLKRTDEWKYL 656


>PO21_NASVI (Q03278) Retrovirus-related Pol polyprotein from type I
           retrotransposable element R2 [Contains: Reverse
           transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
          Length = 1025

 Score = 64.7 bits (156), Expect = 1e-09
 Identities = 72/257 (28%), Positives = 108/257 (42%), Gaps = 21/257 (8%)

Query: 14  APGCDGLPALFYQKFWHIIGDDV-SHFCLQVLHGDIS*SIINKTLLVLIPKVKKPMHANQ 72
           A G DG+        W+ I + + S F + + HG      ++    VLIPK    M    
Sbjct: 334 AAGPDGMTTTA----WNSIDECIKSLFNMIMYHGQCPRRYLDSRT-VLIPKEPGTMDPAC 388

Query: 73  FRLISLCNVIFKIITKTLANRLKIILPDLICESQTAFVPGRLITDNALVAFECFHYMKKK 132
           FR +S+ +V  +   + LANR+      L+   Q AF+    + +N  +        + K
Sbjct: 389 FRPLSIASVALRHFHRILANRIGE--HGLLDTRQRAFIVADGVAENTSLLSAMIKEARMK 446

Query: 133 ISGCNGVMALKLDMSKAYDRVEWPFLASVLQQMGFPASWVSLIMTCVSTVDFSIMLNGAP 192
           I G   +    LD+ KA+D VE   +   L++   P    + IM         + +    
Sbjct: 447 IKG---LYIAILDVKKAFDSVEHRSILDALRRKKLPLEMRNYIMWVYRNSKTRLEVVKTK 503

Query: 193 QEPFQPHRGLRQGDPLSPYLFILCGEVFSALINKAVLASSLHGIKIARTAPVISHLLFAD 252
               +P RG+RQGDPLSP LF          +  AVL            A  I  L+FAD
Sbjct: 504 GRWIRPARGVRQGDPLSPLLF--------NCVMDAVLRRLPENTGFLMGAEKIGALVFAD 555

Query: 253 DSVIFA--RATVQEALS 267
           D V+ A  R  +Q +LS
Sbjct: 556 DLVLLAETREGLQASLS 572


>PO23_POPJA (Q05118) Retrovirus-related Pol polyprotein from type I
           retrotransposable element R2 [Contains: Reverse
           transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
          Length = 606

 Score = 59.7 bits (143), Expect = 3e-08
 Identities = 57/223 (25%), Positives = 98/223 (43%), Gaps = 21/223 (9%)

Query: 127 HYMKKKISGCNGVMALKLDMSKAYDRVEWPFLASVLQQMGFPASWVSLIMTCVSTVDFSI 186
           HY+K +         + LD+ KA+D V  P +   ++  G        IM+ ++    +I
Sbjct: 11  HYIKLRRLKGKTYNVVSLDIRKAFDTVSHPAILRAMRAFGIDDGMQDFIMSTITDAYTNI 70

Query: 187 MLNGAPQEPFQPHRGLRQGDPLSPYLF-ILCGEVFSALINKAVLASSLHGIKIARTAPVI 245
           ++ G          G++QGDPLSP LF I+  E+ + L ++   AS     KIA      
Sbjct: 71  VVGGRTTNKIYIRNGVKQGDPLSPVLFNIVLDELVTRLNDEQPGASMTPACKIA------ 124

Query: 246 SHLLFADDSVIFARATVQEALSIKAILASYEQASGQVINLDK---------SKLSCSRNV 296
             L FADD ++     +    S+ A   +Y +  G  +N +K         S  S  R+ 
Sbjct: 125 -SLAFADDLLLLEDRDIDVPNSL-ATTCAYFRTRGMTLNPEKCASISAATVSGRSVPRSK 182

Query: 297 PDDCFHELRQLLTVKAVESYDKYLGLP-TIIGKSKTQIFNFVK 338
           P     + R +  +  + ++ KYLGL  +  G +K  ++N  +
Sbjct: 183 PSFTI-DGRYIKPLGGINTF-KYLGLTFSSTGVAKPTVYNLTR 223


>PO22_POPJA (Q03274) Retrovirus-related Pol polyprotein from type I
           retrotransposable element R2 [Contains: Reverse
           transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
          Length = 711

 Score = 55.5 bits (132), Expect = 6e-07
 Identities = 57/231 (24%), Positives = 106/231 (45%), Gaps = 15/231 (6%)

Query: 60  LIPKVKKPMHANQFRLISLCNVIFKIITKTLANRLKIILPDLICESQTAFVPGRLITDNA 119
           LIPK     + + +R I++ + + +++ + LA RL+  +     +   A + G L+    
Sbjct: 63  LIPKDGDLENPSNWRPITIASALQRLLHRILAKRLEAAVELHPAQKGYARIDGTLVNSLL 122

Query: 120 LVAFECFHYMKKKISGCNGVMALKLDMSKAYDRVEWPFLASVLQQMGFPASWVSLIMTCV 179
           L  +      ++K         + LD+ KA+D V    +   LQ++G      + I   +
Sbjct: 123 LDTYISSRREQRKTYN-----VVSLDVRKAFDTVSHSSICRALQRLGIDEGTSNYITGSL 177

Query: 180 STVDFSIMLN-GAPQEPFQPHRGLRQGDPLSPYLF-ILCGEVFSALINKAVLASSLHGIK 237
           S    +I +  G+        RG++QGDPLSP+LF  +  E+  +L +   +  ++   K
Sbjct: 178 SDSTTTIRVGPGSQTRKICIRRGVKQGDPLSPFLFNAVLDELLCSLQSTPGIGGTIGEEK 237

Query: 238 IARTAPVISHLLFADDSVIFARATVQEALSIKAILASYEQASGQVINLDKS 288
           I    PV   L FADD ++     V    ++ A +A++ +  G  +N  KS
Sbjct: 238 I----PV---LAFADDLLLLEDNDVLLPTTL-ATVANFFRLRGMSLNAKKS 280


>YMH5_CAEEL (P34472) Hypothetical protein F58A4.5 in chromosome III
          Length = 1222

 Score = 48.9 bits (115), Expect = 6e-05
 Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 4/160 (2%)

Query: 57  LLVLIPKVKKPMHANQFRLISLCNVIFKIITKTLANRLKIILPDLICESQTAFVPGRLIT 116
           +++ IPK   P   + +R ISL +   +I+ + + +R++     L+   Q  F+  R   
Sbjct: 669 VIIPIPKKGNPSSPSNYRPISLTDPFARIMERIICSRIRSEYSHLLSPHQHGFLNFRSCP 728

Query: 117 DNALVAFECFHYMKKKISGCNGVMALKLDMSKAYDRVEWPFLASVLQQMGFPASWVSLIM 176
            + + +   +H + K     +    L  D +KA+D+V  P L   L   G      S   
Sbjct: 729 SSLVRSISLYHSILKNEKSLD---ILFFDFAKAFDKVSHPILLKKLALFGLDKLTCSWFK 785

Query: 177 TCVSTVDFSIMLNGAPQEPFQP-HRGLRQGDPLSPYLFIL 215
             +    FS+ +N        P   G+ QG    P LFIL
Sbjct: 786 EFLHLRTFSVKINKFVSSNAYPISSGVPQGSVSGPLLFIL 825


>Y2R2_DROME (P16425) Hypothetical 115 kDa protein in type I
           retrotransposable element R1DM (ORF 2)
          Length = 1021

 Score = 45.4 bits (106), Expect = 7e-04
 Identities = 60/300 (20%), Positives = 119/300 (39%), Gaps = 43/300 (14%)

Query: 1   DVEEALFQMHPTKAPGCDGLPALFYQKFWHIIGDDVSHF---CLQVLHGDIS*SIINKTL 57
           +V+  + ++   ++PG DG+     +  W  I + ++     C+++ +            
Sbjct: 438 EVDTCVARLKSRRSPGLDGINGTICKAVWRAIPEHLASLFSRCIRLGYFPAEWKCPRVVS 497

Query: 58  LVLIPKVKKPMHANQFRLISLCNVIFKIITKTLANRLKIILPDLICESQTAFVPGRLITD 117
           L+  P  K     + +R I L  V  K++   + NR++ +LP+  C  Q  F  GR + D
Sbjct: 498 LLKGPD-KDKCEPSSYRGICLLPVFGKVLEAIMVNRVREVLPEG-CRWQFGFRQGRCVED 555

Query: 118 NALVAFECFHYMKKKI--SGCNGVMALKLDMSKAYDRVEWPFLASVLQQMGF--PASWVS 173
                   + ++K  +  S    V+   +D   A+D VEW    S L  +G      W S
Sbjct: 556 -------AWRHVKSSVGASAAQYVLGTFVDFKGAFDNVEWSAALSRLADLGCREMGLWQS 608

Query: 174 LIMTCVSTVDFSIMLNGAPQEPFQPHRGLRQGDPLSPYLFILCGEVFSALINKAVLASSL 233
                 + +  S   +G  + P    RG  QG    P+++ +                 L
Sbjct: 609 FFSGRRAVIRSS---SGTVEVPVT--RGCPQGSISGPFIWDI-----------------L 646

Query: 234 HGIKIARTAPVISHLLFADDSVIF----ARATVQE-ALSIKAILASYEQASGQVINLDKS 288
             + + R  P      +ADD ++     +RA ++E    + +I+ ++    G  ++  K+
Sbjct: 647 MDVLLQRLQPYCQLSAYADDLLLLVEGNSRAVLEEKGAQLMSIVETWGAEVGDCLSTSKT 706


>PO21_SCICO (Q03279) Retrovirus-related Pol polyprotein from type I
           retrotransposable element R2 [Contains: Reverse
           transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
          Length = 869

 Score = 44.3 bits (103), Expect = 0.001
 Identities = 57/210 (27%), Positives = 86/210 (40%), Gaps = 17/210 (8%)

Query: 13  KAPGCDGLPALFYQKFWHIIGDDVSH--FCLQVLHGDIS*SIINKTLLVLIPKVKKPMHA 70
           K  G DG+      + W+ + D      + + V +G +  S I  +  V  PK++     
Sbjct: 173 KGAGPDGVTP----RSWNALDDRYKRLLYNIFVFYGRVP-SPIKGSRTVFTPKIEGGPDP 227

Query: 71  NQFRLISLCNVIFKIITKTLANRLKIILPDLICESQTAFVP--GRLITDNALVAFECFHY 128
             FR +S+C+VI +   K LA R   +      E QTA++P  G  I  + L A      
Sbjct: 228 GVFRPLSICSVILREFNKILARR--FVSCYTYDERQTAYLPIDGVCINVSMLTAIIAEAK 285

Query: 129 MKKKISGCNGVMALKLDMSKAYDRVEWPFLASVLQQMGFPASWVSLIMTCVSTVDFSIML 188
             +K      +    LD+ KA++ V    L   + + G P   V  I    + V   +  
Sbjct: 286 RLRK-----ELHIAILDLVKAFNSVYHSALIDAITEAGCPPGVVDYIADMYNNVITEMQF 340

Query: 189 NGAPQEPFQPHRGLRQGDPLSPYLFILCGE 218
            G   E      G+ QGDPLS  LF L  E
Sbjct: 341 EG-KCELASILAGVYQGDPLSGPLFTLAYE 369


>RTJK_DROFU (P21329) RNA-directed DNA polymerase from mobile element
           jockey (EC 2.7.7.49) (Reverse transcriptase)
          Length = 916

 Score = 38.1 bits (87), Expect = 0.11
 Identities = 58/277 (20%), Positives = 114/277 (40%), Gaps = 44/277 (15%)

Query: 1   DVEEALFQMHPTKAPGCDGLPALFYQKFWHIIGDDVSHFCLQVLHGDIS*SIINK----- 55
           +V+E + ++ P KAPG D    L   +   ++ D    + + + +  +      K     
Sbjct: 442 EVKELVSKLKPKKAPGED----LLDNRTIRLLPDQALLYLVLIFNSILRVGYFPKARPTA 497

Query: 56  TLLVLIPKVKKPMHANQFRLISLCNVIFKIITKTLANRLKIILPDLICESQTAFVP---- 111
           ++++++   K+P+  + +R  SL   + K++ + + NR+      L  E  T  +P    
Sbjct: 498 SIIMILKPGKQPLDVDSYRPTSLLPSLGKMLERLILNRI------LTSEEVTRAIPKFQF 551

Query: 112 ------GRLITDNALVAFECFHYMKKKISGCNGVMALKLDMSKAYDRVEWPFLASVLQQM 165
                 G     + +V F      KK+ +G     +  LD+ +A+DRV  P L    + +
Sbjct: 552 GFRLQHGTPEQLHRVVNFALEALEKKEYAG-----SCFLDIQQAFDRVWHPGLLYKAKSL 606

Query: 166 GFPASWVSLIMTCVSTVDFSIMLNGAPQEPFQPHRGLRQGDPLSPYLFILCGEVFSA-LI 224
             P  +  LI +      FS+  +G          G+ QG  L P L+     +F+A + 
Sbjct: 607 LSPQLF-QLIKSFWEGRKFSVTADGCRSSVKFIEAGVPQGSVLGPTLY----SIFTADMP 661

Query: 225 NKAVLASSLHGIKIARTAPVISHLLFADDSVIFARAT 261
           N+  +     G  +  T        +ADD  +  ++T
Sbjct: 662 NQNAVTGLAEGEVLIAT--------YADDIAVLTKST 690


>YO84_CAEEL (P34620) Hypothetical protein ZK1236.4 in chromosome III
          Length = 364

 Score = 34.3 bits (77), Expect = 1.5
 Identities = 23/90 (25%), Positives = 36/90 (39%)

Query: 124 ECFHYMKKKISGCNGVMALKLDMSKAYDRVEWPFLASVLQQMGFPASWVSLIMTCVSTVD 183
           EC +   K I          LD SKA+D+V    L   L  +      +  +   ++   
Sbjct: 3   ECMNNWTKNIDEGAQTDVKYLDFSKAFDKVSHDILLDKLTSIKINKHLIRWLDVFLTNRS 62

Query: 184 FSIMLNGAPQEPFQPHRGLRQGDPLSPYLF 213
           F + +     EP +   G+ QG  +SP LF
Sbjct: 63  FKVKVGNTLSEPKKTVCGVPQGSVISPVLF 92


>RTJK_DROME (P21328) RNA-directed DNA polymerase from mobile element
           jockey (EC 2.7.7.49) (Reverse transcriptase)
          Length = 916

 Score = 34.3 bits (77), Expect = 1.5
 Identities = 46/223 (20%), Positives = 88/223 (38%), Gaps = 21/223 (9%)

Query: 1   DVEEALFQMHPTKAPGCDGLPALFYQKFWHIIGDDVSHFCLQVLHGDIS*SIINKTL--- 57
           +V+  + ++   KAPG D    L   +   ++ D    F   + +  +      K     
Sbjct: 442 EVKNLIAKLPLKKAPGED----LLDNRTIRLLPDQALQFLALIFNSVLDVGYFPKAWKSA 497

Query: 58  -LVLIPKV-KKPMHANQFRLISLCNVIFKIITKTLANRLKIILPDLICESQTAFVPG--- 112
            +++I K  K P   + +R  SL   + KI+ + + NRL      L C+  T  +P    
Sbjct: 498 SIIMIHKTGKTPTDVDSYRPTSLLPSLGKIMERLILNRL------LTCKDVTKAIPKFQF 551

Query: 113 --RLITDNALVAFECFHYMKKKISGCNGVMALKLDMSKAYDRVEWPFLASVLQQMGFPAS 170
             RL            ++  + +      +   LD+ +A+DRV  P L    +++ FP  
Sbjct: 552 GFRLQHGTPEQLHRVVNFALEAMENKEYAVGAFLDIQQAFDRVWHPGLLYKAKRL-FPPQ 610

Query: 171 WVSLIMTCVSTVDFSIMLNGAPQEPFQPHRGLRQGDPLSPYLF 213
              ++ + +    F + ++G          G+ QG  L P L+
Sbjct: 611 LYLVVKSFLEERTFHVSVDGYKSSIKPIAAGVPQGSVLGPTLY 653


>ADFP_BOVIN (Q9TUM6) Adipophilin (Adipose differentiation-related
           protein) (ADRP)
          Length = 450

 Score = 32.7 bits (73), Expect = 4.5
 Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 29/89 (32%)

Query: 695 LGAFLTLLYAIWMARNELCFKEKAS---------------TLEQILTHAASLTPLPPLEG 739
           LG     +Y+++  RN   FKE +                +L+ ++ +  + TPL  L G
Sbjct: 346 LGVMAGDIYSVF--RNAASFKEVSDGLLASSKGQLQKMKESLDDVMDYLVNNTPLNWLVG 403

Query: 740 PMVPQV------------HRPNTWSRPHP 756
           P  PQV             RP  WSR HP
Sbjct: 404 PFYPQVTESESAQAPGTTRRPGRWSRKHP 432


>CHSY_PINST (O65872) Chalcone synthase (EC 2.3.1.74)
           (Naringenin-chalcone synthase)
          Length = 395

 Score = 32.3 bits (72), Expect = 5.8
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 578 SDGHYSTKSGYQFLRHGAEAVVASSSQVPSLPRADWRKLWKADALLP 624
           SD H  +  G      GA A++  +  VP + +  +  LW A  +LP
Sbjct: 207 SDTHLDSMVGQALFGDGARALIVGADPVPEVEKPCFEMLWTAQTILP 253


>VE05_VARV (Q01483) Protein E5
          Length = 341

 Score = 32.0 bits (71), Expect = 7.6
 Identities = 19/58 (32%), Positives = 29/58 (49%), Gaps = 1/58 (1%)

Query: 283 INLDKSKLSCSRNVPDDCFHELRQLLTVKAVESYDKYLGLPT-IIGKSKTQIFNFVKE 339
           I LDK KL+   ++ + C    R +  +   E  +KY   P  IIGK+  +  +FV E
Sbjct: 284 IGLDKLKLNIVHDIVEPCMPVRRPVAKILCKEMVNKYFENPLHIIGKNLQECIDFVSE 341


>RPOB_ASTLO (P27059) DNA-directed RNA polymerase beta chain (EC
           2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta
           subunit) (RNA polymerase beta subunit)
          Length = 1076

 Score = 32.0 bits (71), Expect = 7.6
 Identities = 24/118 (20%), Positives = 54/118 (45%), Gaps = 2/118 (1%)

Query: 262 VQEALSIKAILASY--EQASGQVINLDKSKLSCSRNVPDDCFHELRQLLTVKAVESYDKY 319
           + E L  + IL S   ++    +IN  + K   ++N+PD     ++ L     ++   K 
Sbjct: 697 ISERLRNEDILTSIHVKKCKSFLINHKEKKEEITKNIPDIKLKNVKNLNNNGIIKIGSKI 756

Query: 320 LGLPTIIGKSKTQIFNFVKERVWKKLKGWKERSLYRAGREVLVKAVAHAIPSYVMSCF 377
            G   +IG  K ++ N+  E +++ L  ++ +++     + LV  V +     + +C+
Sbjct: 757 NGKEILIGIIKKRLINYEVELIYEILSEYERKNISVLSPKNLVGIVTNTKIHKIKNCY 814


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.325    0.139    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,592,364
Number of Sequences: 164201
Number of extensions: 4582678
Number of successful extensions: 12025
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 11981
Number of HSP's gapped (non-prelim): 32
length of query: 906
length of database: 59,974,054
effective HSP length: 119
effective length of query: 787
effective length of database: 40,434,135
effective search space: 31821664245
effective search space used: 31821664245
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 70 (31.6 bits)