BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0151.7
(1675 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 205 1e-51
POL3_DROME (P04323) Retrovirus-related Pol polyprotein from tran... 205 1e-51
POL2_DROME (P20825) Retrovirus-related Pol polyprotein from tran... 192 5e-48
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 188 1e-46
POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from tran... 185 1e-45
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei... 173 3e-42
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei... 170 3e-41
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei... 170 3e-41
POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse transcript... 166 4e-40
POLY_DROME (P10401) Retrovirus-related Pol polyprotein from tran... 152 1e-35
POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic pro... 127 3e-28
POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic pro... 127 3e-28
POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic pro... 126 4e-28
POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic pro... 125 1e-27
POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic pro... 123 5e-27
POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23... 121 2e-26
POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.2... 120 4e-26
POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic prot... 119 7e-26
YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II 112 1e-23
POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic prot... 110 3e-23
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 205 bits (521), Expect = 1e-51
Identities = 125/414 (30%), Positives = 211/414 (50%), Gaps = 9/414 (2%)
Query: 677 LALNPSVKPVSQLRRRLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVVMVKKANGKW 736
+ L +P+ Q R + +++ + K+L + IRE K P W + VV+VKK +G
Sbjct: 934 IELKEGAEPIRQKPRPIPLALKPEIRKMIQKMLNQKVIRESKSP-WSSPVVLVKKKDGSI 992
Query: 737 LMCVDYTDLNKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGYHQIRMHPADEDKTAF 796
MC+DY +NK +++PLP+I++ + +G +L ++ D +G+ QI + ++ TAF
Sbjct: 993 RMCIDYRKVNKVVKNNAHPLPNIEATLQSLAGKKLYTVFDMIAGFWQIPLDEKSKEITAF 1052
Query: 797 MTARVNYCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDL 856
+ + +PFGL + A +Q M+ + +G VYVDD+++ S H QD+
Sbjct: 1053 AIGSELFEWNVLPFGLVISPALFQGTMEEIIGDLLGVCAFVYVDDLLIASKDMEQHLQDV 1112
Query: 857 EEAFGEIRKHNMRLNPEKCSFGVQGGKFLGFMITSRGIEINPDKCKAIQQMKNPSNVKEV 916
+EA IRK M+L KC + ++LG +T G+E K ++Q P+NVKE+
Sbjct: 1113 KEALTRIRKSGMKLRASKCHIAKKEVEYLGHKVTLDGVETQEVKTDKMKQFSRPTNVKEL 1172
Query: 917 QRLTGRIAALSRFLPKSGDRSFPFFKCLQKNAAFEWTAECEEAFVRLKELLSSPPILSKP 976
Q G + +F+ + + A+ W E E AF LK+L+ P+L++P
Sbjct: 1173 QSFLGLVGYYRKFILNFAQIASSLTSLISAKVAWIWEKEQEIAFQELKKLVCQTPVLAQP 1232
Query: 977 -----MQG-HPLHLYFAVSDSALSSVILQEG-DGEHRVIYFVSHTLQGAEVRYKKIEKAA 1029
++G P +Y S + +V+ QEG DG+ I F S L AE RY + A
Sbjct: 1233 DVEAALKGDRPFMIYTDASRKGIGAVLAQEGPDGQQHPIAFASKALSPAETRYHITDLEA 1292
Query: 1030 LAVLVTARRLRPYFQSFPVRVRTD-LPLRQVLQKPDMSGRLVAWSVELSEYGLQ 1082
LA++ RR + + V TD PL +L+ ++ RL WS+E+ E+ ++
Sbjct: 1293 LAMMFALRRFKTIIYGTAITVFTDHKPLISLLKGSPLADRLWRWSIEILEFDVK 1346
Score = 112 bits (280), Expect = 9e-24
Identities = 95/373 (25%), Positives = 162/373 (42%), Gaps = 24/373 (6%)
Query: 1292 EQRREASHYTLIDGHLYRRGFSAPLLKCVPPEKYEAIMSEVHEGMCASHIGGRSLACKVL 1351
E +Y ++ G L VP + ++ E+HEGM A H G + + +++
Sbjct: 1432 ESEISLEYYKIVGGVLKNTEIEEQSRSVVPEKIRTPLLKELHEGMLAGHFGIKKM-WRMV 1490
Query: 1352 RAGFYWPTLRKDCMDFVKKCKKCQVFADLSKAPPKELVTMSAPWPFAMWGVDLVGPFPIA 1411
FYWP +R + V+ C KC D SK L +P + DL+ ++
Sbjct: 1491 HRKFYWPQMRVCVENCVRTCAKCLCANDHSKLT-SSLTPYRMTFPLEIVACDLMD-VGLS 1548
Query: 1412 RSQMKFILVAVDYFTKWIEAEPLAKITSAKIVNFYWKRIVCRFG-IPRAIVSDNGTQFSS 1470
++IL +D FTK+ A P+ + ++ + +R G IP +++D G +F +
Sbjct: 1549 VQGNRYILTIIDLFTKYGTAVPIPDKKAETVLKAFVERWAIGEGRIPLKLLTDQGKEFVN 1608
Query: 1471 NQTREFCREMGIQMRFASVEHPQANGQVEYANRVILRGLRRRLKEAKGAWLEELPVVLWS 1530
+F + I+ + +ANG VE N+ I+ ++++ W +++ +++
Sbjct: 1609 GLFAQFTHMLKIEHITTKGYNSRANGAVERFNKTIMHIMKKKTAVPM-EWDDQVVYAVYA 1667
Query: 1531 YNTTVQSTTRETPFRMTYGVDAMLPAEIDNFTWRTEPDFEGENQANMAAELDLLSE---- 1586
YN V T ETP + +G D M P E+ D G N A+M LL++
Sbjct: 1668 YNNCVHENTGETPMFLMHGRDVMGPLEMSG------EDAVGINYADMDEYKHLLTQELLK 1721
Query: 1587 ----TRDEAHIRETAMKQRVAAKFNSRVRVRDMQVGDLVL----KWRSGASGNKLTPNWE 1638
++ A + + K K+ S+ + R Q G VL + GA KL W
Sbjct: 1722 VQKIAKEHAMREQESYKSLFDQKYASK-KHRFPQPGSRVLLEIPSEKLGAQCPKLVNKWS 1780
Query: 1639 GPYRIIKVLGNEA 1651
GPYR+I N A
Sbjct: 1781 GPYRVISCSENSA 1793
>POL3_DROME (P04323) Retrovirus-related Pol polyprotein from
transposon 17.6 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1058
Score = 205 bits (521), Expect = 1e-51
Identities = 127/385 (32%), Positives = 195/385 (49%), Gaps = 10/385 (2%)
Query: 701 VQQEVDKLLAAEFIRE----VKYPTWLANVVMVKKANGKWLMCVDYTDLNKACPKDSYPL 756
V+ ++ +L IR P W+ K+ + +DY LN+ D +P+
Sbjct: 223 VESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPI 282
Query: 757 PSIDSLVDGASGNELLSLMDAYSGYHQIRMHPADEDKTAFMTARVNYCYRTMPFGLKNAG 816
P++D ++ + +D G+HQI M P KTAF T +Y Y MPFGLKNA
Sbjct: 283 PNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAP 342
Query: 817 ATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHNMRLNPEKCS 876
AT+QR M+ + + ++ VY+DD+IV S +H Q L F ++ K N++L +KC
Sbjct: 343 ATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCE 402
Query: 877 FGVQGGKFLGFMITSRGIEINPDKCKAIQQMKNPSNVKEVQRLTGRIAALSRFLPKSGDR 936
F Q FLG ++T GI+ NP+K +AIQ+ P+ KE++ G +F+P D
Sbjct: 403 FLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADI 462
Query: 937 SFPFFKCLQKNAAFEWT-AECEEAFVRLKELLSSPPILSKPMQGHPLHLYFAVSDSALSS 995
+ P KCL+KN + T E + AF +LK L+S PIL P L SD AL +
Sbjct: 463 AKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGA 522
Query: 996 VILQEGDGEHRVIYFVSHTLQGAEVRYKKIEKAALAVLVTARRLRPYFQSFPVRVRTD-L 1054
V+ Q+G + ++S TL E+ Y IEK LA++ + R Y + +D
Sbjct: 523 VLSQDG----HPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQ 578
Query: 1055 PLRQVLQKPDMSGRLVAWSVELSEY 1079
PL + + D + +L W V+LSE+
Sbjct: 579 PLSWLYRMKDPNSKLTRWRVKLSEF 603
>POL2_DROME (P20825) Retrovirus-related Pol polyprotein from
transposon 297 [Contains: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1059
Score = 192 bits (489), Expect = 5e-48
Identities = 124/390 (31%), Positives = 189/390 (47%), Gaps = 10/390 (2%)
Query: 701 VQQEVDKLLAAEFIRE----VKYPTWLANVVMVKKANGKWLMCVDYTDLNKACPKDSYPL 756
V+ +V ++L IRE PTW+ K+ + +DY LN+ D YP+
Sbjct: 222 VENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPI 281
Query: 757 PSIDSLVDGASGNELLSLMDAYSGYHQIRMHPADEDKTAFMTARVNYCYRTMPFGLKNAG 816
P++D ++ + + +D G+HQI M KTAF T +Y Y MPFGL+NA
Sbjct: 282 PNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAP 341
Query: 817 ATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHNMRLNPEKCS 876
AT+QR M+ + + ++ VY+DD+I+ S +H ++ F ++ N++L +KC
Sbjct: 342 ATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCE 401
Query: 877 FGVQGGKFLGFMITSRGIEINPDKCKAIQQMKNPSNVKEVQRLTGRIAALSRFLPKSGDR 936
F + FLG ++T GI+ NP K KAI P+ KE++ G +F+P D
Sbjct: 402 FLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADI 461
Query: 937 SFPFFKCLQKNAAFE-WTAECEEAFVRLKELLSSPPILSKPMQGHPLHLYFAVSDSALSS 995
+ P CL+K + E EAF +LK L+ PIL P L S+ AL +
Sbjct: 462 AKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGA 521
Query: 996 VILQEGDGEHRVIYFVSHTLQGAEVRYKKIEKAALAVLVTARRLRPYFQSFPVRVRTD-L 1054
V+ Q G I F+S TL E+ Y IEK LA++ + R Y + +D
Sbjct: 522 VLSQNG----HPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQ 577
Query: 1055 PLRQVLQKPDMSGRLVAWSVELSEYGLQYD 1084
PLR + + +L W V LSEY + D
Sbjct: 578 PLRWLHNLKEPGAKLERWRVRLSEYQFKID 607
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 188 bits (477), Expect = 1e-46
Identities = 127/443 (28%), Positives = 205/443 (45%), Gaps = 11/443 (2%)
Query: 644 ETRLTKLLGENLDLFAWSCKDMPGIDPNFICHRLALNPSVKPVSQLRRRLGGDKGKAVQQ 703
+++L + E +D+FA + P N +L L +PV R + + +Q
Sbjct: 276 KSQLENICSEYIDIFALESE--PITVNNLYKQQLRLKDD-EPVYTKNYRSPHSQVEEIQA 332
Query: 704 EVDKLLAAEFIREVKYPTWLANVVMVKKANG------KWLMCVDYTDLNKACPKDSYPLP 757
+V KL+ + + E + + +++V K + KW + +DY +NK D +PLP
Sbjct: 333 QVQKLIKDKIV-EPSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKKLLADKFPLP 391
Query: 758 SIDSLVDGASGNELLSLMDAYSGYHQIRMHPADEDKTAFMTARVNYCYRTMPFGLKNAGA 817
ID ++D + S +D SG+HQI + D T+F T+ +Y + +PFGLK A
Sbjct: 392 RIDDILDQLGRAKYFSCLDLMSGFHQIELDEGSRDITSFSTSNGSYRFTRLPFGLKIAPN 451
Query: 818 TYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHNMRLNPEKCSF 877
++QR+M F+G +Y+DD+IV ++L E FG+ R++N++L+PEKCSF
Sbjct: 452 SFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEVFGKCREYNLKLHPEKCSF 511
Query: 878 GVQGGKFLGFMITSRGIEINPDKCKAIQQMKNPSNVKEVQRLTGRIAALSRFLPKSGDRS 937
+ FLG T +GI + K IQ P + +R RF+ D S
Sbjct: 512 FMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYYRRFIKNFADYS 571
Query: 938 FPFFKCLQKNAAFEWTAECEEAFVRLKELLSSPPILSKPMQGHPLHLYFAVSDSALSSVI 997
+ +KN FEWT EC++AF+ LK L +P +L P + S A +V+
Sbjct: 572 RHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTDASKQACGAVL 631
Query: 998 LQEGDGEHRVIYFVSHTLQGAEVRYKKIEKAALAVLVTARRLRPYFQSFPVRVRTD-LPL 1056
Q +G + + S E E+ A+ RPY V+TD PL
Sbjct: 632 TQNHNGHQLPVAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYIYGKHFTVKTDHRPL 691
Query: 1057 RQVLQKPDMSGRLVAWSVELSEY 1079
+ + S +L +EL EY
Sbjct: 692 TYLFSMVNPSSKLTRIRLELEEY 714
Score = 106 bits (264), Expect = 6e-22
Identities = 76/336 (22%), Positives = 155/336 (45%), Gaps = 7/336 (2%)
Query: 1315 PLLKCVPPEKYEAIMSEVHEG-MCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKKCKK 1373
P+ + ++ EAI+S +H+ + H G KV R +YW + K ++V+KC+K
Sbjct: 883 PVTQINNEKEKEAILSTLHDDPIQGGHTGITKTLAKVKRH-YYWKNMSKYIKEYVRKCQK 941
Query: 1374 CQVFADLSKAPPKELVTMSAPWPFAMWGVDLVGPFPIARSQMKFILVAVDYFTKWIEAEP 1433
CQ +T + F VD +GP P + + ++ + + TK++ A P
Sbjct: 942 CQKAKTTKHTKTPMTITETPEHAFDRVVVDTIGPLPKSENGNEYAVTLICDLTKYLVAIP 1001
Query: 1434 LAKITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSNQTREFCREMGIQMRFASVEHPQ 1493
+A ++ + ++ + ++G + ++D GT++ ++ + C+ + I+ ++ H Q
Sbjct: 1002 IANKSAKTVAKAIFESFILKYGPMKTFITDMGTEYKNSIITDLCKYLKIKNITSTAHHHQ 1061
Query: 1494 ANGQVEYANRVILRGLRRRLKEAKGAWLEELPVVLWSYNTTVQSTTRETPFRMTYGVDAM 1553
G VE ++R + +R + K W L ++ +NTT P+ + +G +
Sbjct: 1062 TVGVVERSHRTLNEYIRSYISTDKTDWDVWLQYFVYCFNTTQSMVHNYCPYELVFGRTSN 1121
Query: 1554 LPAEIDNFTWRTEPDFEGENQANMAAELDLLSETRDEAHIRETAMKQRVAAKFNSRVRVR 1613
LP N EP + ++ A + ++ R + A K++ ++ +V+
Sbjct: 1122 LPKHF-NKLHSIEPIYNIDDYAKESKYRLEVAYARARKLLE--AHKEKNKENYDLKVKDI 1178
Query: 1614 DMQVGDLVLKWRSGASGNKLTPNWEGPYRIIKVLGN 1649
+++VGD VL G+KL + GPY+I + N
Sbjct: 1179 ELEVGDKVL--LRNEVGHKLDFKYTGPYKIESIGDN 1212
>POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from
transposon opus [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1003
Score = 185 bits (469), Expect = 1e-45
Identities = 124/401 (30%), Positives = 204/401 (49%), Gaps = 21/401 (5%)
Query: 701 VQQEVDKLLAAEFIRE----VKYPTWLANVVMVKKANGK--WLMCVDYTDLNKACPKDSY 754
V++++D+LL IR P W+ V K NG+ + M VD+ LN D+Y
Sbjct: 139 VERQIDELLQDGIIRPSNSPYNSPIWI--VPKKPKPNGEKQYRMVVDFKRLNTVTIPDTY 196
Query: 755 PLPSIDSLVDGASGNELLSLMDAYSGYHQIRMHPADEDKTAFMTARVNYCYRTMPFGLKN 814
P+P I++ + + + +D SG+HQI M +D KTAF T Y + +PFGLKN
Sbjct: 197 PIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKN 256
Query: 815 AGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHNMRLNPEK 874
A A +QR++D + +G+ VY+DD+IV S H ++L + K N+++N EK
Sbjct: 257 APAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEK 316
Query: 875 CSFGVQGGKFLGFMITSRGIEINPDKCKAIQQMKNPSNVKEVQRLTGRIAALSRFLPKSG 934
F +FLG+++T+ GI+ +P K +AI +M P++VKE++R G + +F+
Sbjct: 317 SHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYA 376
Query: 935 DRSFP---FFKCLQKNAAFEWTAECE--------EAFVRLKELLSSPPILSKPMQGHPLH 983
+ P + L N +++ ++F LK +L S IL+ P P H
Sbjct: 377 KVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFH 436
Query: 984 LYFAVSDSALSSVILQEGDGEHRVIYFVSHTLQGAEVRYKKIEKAALAVLVTARRLRPY- 1042
L S+ A+ +V+ Q+ G R I ++S +L E Y IEK LA++ + LR Y
Sbjct: 437 LTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYL 496
Query: 1043 FQSFPVRVRTD-LPLRQVLQKPDMSGRLVAWSVELSEYGLQ 1082
+ + ++V TD PL L + + +L W + EY +
Sbjct: 497 YGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCE 537
Score = 42.7 bits (99), Expect = 0.008
Identities = 62/302 (20%), Positives = 125/302 (40%), Gaps = 25/302 (8%)
Query: 1339 SHIGGRSLACKVLRAGFYWPTLRKDCMDFVKKCKKCQVFADLSKAPPKELVTMSAPWPFA 1398
+H G + ++L +Y+P + C+ C+++ + P K + P P
Sbjct: 704 AHRGPTEIRLQLLEK-YYFPRMSSTIRLQTSSCQCCKLYK-YERHPNKPNLQ---PTPIP 758
Query: 1399 MWGVDLVGPFPIARSQMKFILVAVDYFTKWIEAEPLAKITSAKIVNFYWKRIVCRFGIPR 1458
+ +++ I + + L +D F+K+ + L S + + + F P+
Sbjct: 759 NYPCEILH-IDIFALEKRLYLSCIDKFSKFAKLFHLQSKASVHLRETLVEALHY-FTAPK 816
Query: 1459 AIVSDNGTQFSSNQTREFCREMGIQMRFASVEHPQANGQVEYANRVILRGLRRRLKEAKG 1518
+VSDN + R + I + +A + + NGQVE + L + R LK+
Sbjct: 817 VLVSDNERGLLCPTVLNYLRSLDIDLYYAPTQKSEVNGQVERFHSTFLE-IYRCLKDELP 875
Query: 1519 AW--LEELPVVLWSYNTTVQSTTRETPFRMTYGVDAMLPAE-IDNFTWRTEPDFEG---- 1571
+ +E + + + YNT+V S T P + + + + + + +F +T D +G
Sbjct: 876 TFKPVELVHIAVDRYNTSVHSVTNRKPADVFFDRSSRVNYQGLTDFRRQTLEDIKGLIEY 935
Query: 1572 -ENQANMAAELDLLSETR-----DEAHIRETAMKQRVAAKFNSRVRVRDMQVGDLVLKWR 1625
+ + NMA + E + DE + +K + A+F D ++ +K R
Sbjct: 936 KQIRGNMARNKN-RDEPKSYGPGDEVFVANKQIKTKEKARFRCEKVQEDNKI---TVKTR 991
Query: 1626 SG 1627
SG
Sbjct: 992 SG 993
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
type 1
Length = 1333
Score = 173 bits (439), Expect = 3e-42
Identities = 135/502 (26%), Positives = 234/502 (45%), Gaps = 17/502 (3%)
Query: 697 KGKAVQQEVDKLLAAEFIREVKYPTWLANVVMVKKANGKWLMCVDYTDLNKACPKDSYPL 756
K +A+ E+++ L + IRE K V+ V K G M VDY LNK + YPL
Sbjct: 424 KMQAMNDEINQGLKSGIIRESKAIN-ACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPL 482
Query: 757 PSIDSLVDGASGNELLSLMDAYSGYHQIRMHPADEDKTAFMTARVNYCYRTMPFGLKNAG 816
P I+ L+ G+ + + +D S YH IR+ DE K AF R + Y MP+G+ A
Sbjct: 483 PLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAP 542
Query: 817 ATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHNMRLNPEKCS 876
A +Q ++ + ++ Y+DD+++ S +H + +++ +++ N+ +N KC
Sbjct: 543 AHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCE 602
Query: 877 FGVQGGKFLGFMITSRGIEINPDKCKAIQQMKNPSNVKEVQRLTGRIAALSRFLPKSGDR 936
F KF+G+ I+ +G + + Q K P N KE+++ G + L +F+PK+
Sbjct: 603 FHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQL 662
Query: 937 SFPFFKCLQKNAAFEWTAECEEAFVRLKELLSSPPILSKPMQGHPLHLYFAVSDSALSSV 996
+ P L+K+ ++WT +A +K+ L SPP+L + L SD A+ +V
Sbjct: 663 THPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAV 722
Query: 997 ILQE-GDGEHRVIYFVSHTLQGAEVRYKKIEKAALAVLVTARRLRPYFQSF--PVRVRTD 1053
+ Q+ D ++ + + S + A++ Y +K LA++ + + R Y +S P ++ TD
Sbjct: 723 LSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTD 782
Query: 1054 ---LPLRQVLQKPDMSGRLVAWSVELSEYGLQYDKR-GKVG--AQSLADFVVELTPDRFE 1107
L R + + RL W + L ++ + + R G A +L+ V E P +
Sbjct: 783 HRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKD 842
Query: 1108 RVDTQWTLFVDGSSNSSGSGTGVTLEGPGDLVLEQSLKFEFKATNNQAEYEALIAGLKLA 1167
D FV+ S + V E D L L E K + L GL +
Sbjct: 843 SEDNSIN-FVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQ---LKDGLLIN 898
Query: 1168 REVKIGSLLIRTDSQLVENQVK 1189
+ +I L+ D+QL +K
Sbjct: 899 SKDQI---LLPNDTQLTRTIIK 917
Score = 125 bits (313), Expect = 1e-27
Identities = 105/458 (22%), Positives = 187/458 (39%), Gaps = 56/458 (12%)
Query: 1218 VEYVPRTENQRADALAKLASTRKP------DNNRSVIQETLAFPSIEGELMACVDRGATW 1271
+ Y P + N ADAL+++ +P DN+ + + + + +
Sbjct: 815 INYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDDFKNQ----------- 863
Query: 1272 MGPILSILAGDPAEVEQCTKEQRREASHYTLIDGHLYRRGFSAPLLKCVPPEKYEAIMSE 1331
+++ D + E +R + L DG L +L + I+ +
Sbjct: 864 ---VVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINS--KDQILLPNDTQLTRTIIKK 918
Query: 1332 VHEGMCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKKCKKCQV--------FADLSKA 1383
HE H G L +LR F W +RK ++V+ C CQ+ + L
Sbjct: 919 YHEEGKLIHPGIELLTNIILRR-FTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPI 977
Query: 1384 PPKELVTMSAPWPFAMWGVDLVGPFPIARSQMKFILVAVDYFTKWIEAEPLAK-ITSAKI 1442
PP E P+ +D + P + S + V VD F+K P K IT+ +
Sbjct: 978 PPSER-------PWESLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQT 1029
Query: 1443 VNFYWKRIVCRFGIPRAIVSDNGTQFSSNQTREFCREMGIQMRFASVEHPQANGQVEYAN 1502
+ +R++ FG P+ I++DN F+S ++F + M+F+ PQ +GQ E N
Sbjct: 1030 ARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTN 1089
Query: 1503 RVILRGLRRRLKEAKGAWLEELPVVLWSYNTTVQSTTRETPFRMTYGVD-AMLPAEIDNF 1561
+ + + LR W++ + +V SYN + S T+ TPF + + A+ P E+
Sbjct: 1090 QTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLEL--- 1146
Query: 1562 TWRTEPDFEGENQANMAAELDLLSETRDEAHIRETAMKQRVAAKFNSRVRVRDMQVGDLV 1621
P F + N + + ++ + MK+ K + + Q GDLV
Sbjct: 1147 -----PSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQ---EIEEFQPGDLV 1198
Query: 1622 LKWRSGA----SGNKLTPNWEGPYRIIKVLGNEAYHLE 1655
+ R+ NKL P++ GP+ +++ G Y L+
Sbjct: 1199 MVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELD 1236
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
type 3
Length = 1333
Score = 170 bits (430), Expect = 3e-41
Identities = 134/502 (26%), Positives = 234/502 (45%), Gaps = 17/502 (3%)
Query: 697 KGKAVQQEVDKLLAAEFIREVKYPTWLANVVMVKKANGKWLMCVDYTDLNKACPKDSYPL 756
K +A+ E+++ L + IRE K V+ V K G M VDY LNK + YPL
Sbjct: 424 KMQAMNDEINQGLKSGIIRESKAIN-ACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPL 482
Query: 757 PSIDSLVDGASGNELLSLMDAYSGYHQIRMHPADEDKTAFMTARVNYCYRTMPFGLKNAG 816
P I+ L+ G+ + + +D S YH IR+ DE K AF R + Y MP+G+ A
Sbjct: 483 PLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAP 542
Query: 817 ATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHNMRLNPEKCS 876
A +Q ++ + ++ Y+D++++ S +H + +++ +++ N+ +N KC
Sbjct: 543 AHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCE 602
Query: 877 FGVQGGKFLGFMITSRGIEINPDKCKAIQQMKNPSNVKEVQRLTGRIAALSRFLPKSGDR 936
F KF+G+ I+ +G + + Q K P N KE+++ G + L +F+PK+
Sbjct: 603 FHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQL 662
Query: 937 SFPFFKCLQKNAAFEWTAECEEAFVRLKELLSSPPILSKPMQGHPLHLYFAVSDSALSSV 996
+ P L+K+ ++WT +A +K+ L SPP+L + L SD A+ +V
Sbjct: 663 THPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAV 722
Query: 997 ILQE-GDGEHRVIYFVSHTLQGAEVRYKKIEKAALAVLVTARRLRPYFQSF--PVRVRTD 1053
+ Q+ D ++ + + S + A++ Y +K LA++ + + R Y +S P ++ TD
Sbjct: 723 LSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTD 782
Query: 1054 ---LPLRQVLQKPDMSGRLVAWSVELSEYGLQYDKR-GKVG--AQSLADFVVELTPDRFE 1107
L R + + RL W + L ++ + + R G A +L+ V E P +
Sbjct: 783 HRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKD 842
Query: 1108 RVDTQWTLFVDGSSNSSGSGTGVTLEGPGDLVLEQSLKFEFKATNNQAEYEALIAGLKLA 1167
D FV+ S + V E D L L E K + L GL +
Sbjct: 843 SEDNSIN-FVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQ---LKDGLLIN 898
Query: 1168 REVKIGSLLIRTDSQLVENQVK 1189
+ +I L+ D+QL +K
Sbjct: 899 SKDQI---LLPNDTQLTRTIIK 917
Score = 125 bits (313), Expect = 1e-27
Identities = 105/458 (22%), Positives = 187/458 (39%), Gaps = 56/458 (12%)
Query: 1218 VEYVPRTENQRADALAKLASTRKP------DNNRSVIQETLAFPSIEGELMACVDRGATW 1271
+ Y P + N ADAL+++ +P DN+ + + + + +
Sbjct: 815 INYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDDFKNQ----------- 863
Query: 1272 MGPILSILAGDPAEVEQCTKEQRREASHYTLIDGHLYRRGFSAPLLKCVPPEKYEAIMSE 1331
+++ D + E +R + L DG L +L + I+ +
Sbjct: 864 ---VVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINS--KDQILLPNDTQLTRTIIKK 918
Query: 1332 VHEGMCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKKCKKCQV--------FADLSKA 1383
HE H G L +LR F W +RK ++V+ C CQ+ + L
Sbjct: 919 YHEEGKLIHPGIELLTNIILRR-FTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPI 977
Query: 1384 PPKELVTMSAPWPFAMWGVDLVGPFPIARSQMKFILVAVDYFTKWIEAEPLAK-ITSAKI 1442
PP E P+ +D + P + S + V VD F+K P K IT+ +
Sbjct: 978 PPSER-------PWESLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQT 1029
Query: 1443 VNFYWKRIVCRFGIPRAIVSDNGTQFSSNQTREFCREMGIQMRFASVEHPQANGQVEYAN 1502
+ +R++ FG P+ I++DN F+S ++F + M+F+ PQ +GQ E N
Sbjct: 1030 ARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTN 1089
Query: 1503 RVILRGLRRRLKEAKGAWLEELPVVLWSYNTTVQSTTRETPFRMTYGVD-AMLPAEIDNF 1561
+ + + LR W++ + +V SYN + S T+ TPF + + A+ P E+
Sbjct: 1090 QTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLEL--- 1146
Query: 1562 TWRTEPDFEGENQANMAAELDLLSETRDEAHIRETAMKQRVAAKFNSRVRVRDMQVGDLV 1621
P F + N + + ++ + MK+ K + + Q GDLV
Sbjct: 1147 -----PSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQ---EIEEFQPGDLV 1198
Query: 1622 LKWRSGA----SGNKLTPNWEGPYRIIKVLGNEAYHLE 1655
+ R+ NKL P++ GP+ +++ G Y L+
Sbjct: 1199 MVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELD 1236
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
type 2
Length = 1333
Score = 170 bits (430), Expect = 3e-41
Identities = 134/502 (26%), Positives = 234/502 (45%), Gaps = 17/502 (3%)
Query: 697 KGKAVQQEVDKLLAAEFIREVKYPTWLANVVMVKKANGKWLMCVDYTDLNKACPKDSYPL 756
K +A+ E+++ L + IRE K V+ V K G M VDY LNK + YPL
Sbjct: 424 KMQAMNDEINQGLKSGIIRESKAIN-ACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPL 482
Query: 757 PSIDSLVDGASGNELLSLMDAYSGYHQIRMHPADEDKTAFMTARVNYCYRTMPFGLKNAG 816
P I+ L+ G+ + + +D S YH IR+ DE K AF R + Y MP+G+ A
Sbjct: 483 PLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAP 542
Query: 817 ATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHNMRLNPEKCS 876
A +Q ++ + ++ Y+D++++ S +H + +++ +++ N+ +N KC
Sbjct: 543 AHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCE 602
Query: 877 FGVQGGKFLGFMITSRGIEINPDKCKAIQQMKNPSNVKEVQRLTGRIAALSRFLPKSGDR 936
F KF+G+ I+ +G + + Q K P N KE+++ G + L +F+PK+
Sbjct: 603 FHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQL 662
Query: 937 SFPFFKCLQKNAAFEWTAECEEAFVRLKELLSSPPILSKPMQGHPLHLYFAVSDSALSSV 996
+ P L+K+ ++WT +A +K+ L SPP+L + L SD A+ +V
Sbjct: 663 THPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAV 722
Query: 997 ILQE-GDGEHRVIYFVSHTLQGAEVRYKKIEKAALAVLVTARRLRPYFQSF--PVRVRTD 1053
+ Q+ D ++ + + S + A++ Y +K LA++ + + R Y +S P ++ TD
Sbjct: 723 LSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTD 782
Query: 1054 ---LPLRQVLQKPDMSGRLVAWSVELSEYGLQYDKR-GKVG--AQSLADFVVELTPDRFE 1107
L R + + RL W + L ++ + + R G A +L+ V E P +
Sbjct: 783 HRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKD 842
Query: 1108 RVDTQWTLFVDGSSNSSGSGTGVTLEGPGDLVLEQSLKFEFKATNNQAEYEALIAGLKLA 1167
D FV+ S + V E D L L E K + L GL +
Sbjct: 843 SEDNSIN-FVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQ---LKDGLLIN 898
Query: 1168 REVKIGSLLIRTDSQLVENQVK 1189
+ +I L+ D+QL +K
Sbjct: 899 SKDQI---LLPNDTQLTRTIIK 917
Score = 125 bits (313), Expect = 1e-27
Identities = 105/458 (22%), Positives = 187/458 (39%), Gaps = 56/458 (12%)
Query: 1218 VEYVPRTENQRADALAKLASTRKP------DNNRSVIQETLAFPSIEGELMACVDRGATW 1271
+ Y P + N ADAL+++ +P DN+ + + + + +
Sbjct: 815 INYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDDFKNQ----------- 863
Query: 1272 MGPILSILAGDPAEVEQCTKEQRREASHYTLIDGHLYRRGFSAPLLKCVPPEKYEAIMSE 1331
+++ D + E +R + L DG L +L + I+ +
Sbjct: 864 ---VVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINS--KDQILLPNDTQLTRTIIKK 918
Query: 1332 VHEGMCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKKCKKCQV--------FADLSKA 1383
HE H G L +LR F W +RK ++V+ C CQ+ + L
Sbjct: 919 YHEEGKLIHPGIELLTNIILRR-FTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPI 977
Query: 1384 PPKELVTMSAPWPFAMWGVDLVGPFPIARSQMKFILVAVDYFTKWIEAEPLAK-ITSAKI 1442
PP E P+ +D + P + S + V VD F+K P K IT+ +
Sbjct: 978 PPSER-------PWESLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQT 1029
Query: 1443 VNFYWKRIVCRFGIPRAIVSDNGTQFSSNQTREFCREMGIQMRFASVEHPQANGQVEYAN 1502
+ +R++ FG P+ I++DN F+S ++F + M+F+ PQ +GQ E N
Sbjct: 1030 ARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTN 1089
Query: 1503 RVILRGLRRRLKEAKGAWLEELPVVLWSYNTTVQSTTRETPFRMTYGVD-AMLPAEIDNF 1561
+ + + LR W++ + +V SYN + S T+ TPF + + A+ P E+
Sbjct: 1090 QTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLEL--- 1146
Query: 1562 TWRTEPDFEGENQANMAAELDLLSETRDEAHIRETAMKQRVAAKFNSRVRVRDMQVGDLV 1621
P F + N + + ++ + MK+ K + + Q GDLV
Sbjct: 1147 -----PSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQ---EIEEFQPGDLV 1198
Query: 1622 LKWRSGA----SGNKLTPNWEGPYRIIKVLGNEAYHLE 1655
+ R+ NKL P++ GP+ +++ G Y L+
Sbjct: 1199 MVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELD 1236
>POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)]
Length = 886
Score = 166 bits (421), Expect = 4e-40
Identities = 191/877 (21%), Positives = 355/877 (39%), Gaps = 97/877 (11%)
Query: 726 VVMVKKANGKWLMCVDYTDLNKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGYHQIR 785
V V K +G+W M +DY ++NK P + ++ + + +D +G+
Sbjct: 5 VYPVPKPDGRWRMVLDYREVNKTIPLTAAQNQHSAGILATIVRQKYKTTLDLANGFWAHP 64
Query: 786 MHPADEDKTAFMTARVNYCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVK 845
+ P TAF YC+ +P G N+ A + D V + N++VYVDD+ +
Sbjct: 65 ITPESYWLTAFTWQGKQYCWTRLPQGFLNSPALFTA--DVVDLLKEIPNVQVYVDDIYLS 122
Query: 846 SVRGLDHHQDLEEAFGEIRKHNMRLNPEKCSFGVQGGKFLGFMITSRGIEINPDKCKAIQ 905
+H Q LE+ F + + ++ +K G + +FLGF IT G + +
Sbjct: 123 HDDPKEHVQQLEKVFQILLQAGYVVSLKKSEIGQKTVEFLGFNITKEGRGLTDTFKTKLL 182
Query: 906 QMKNPSNVKEVQRLTGRIAALSRFLPKSGDRSFPFFKCLQ--KNAAFEWTAECEEAFVRL 963
+ P ++K++Q + G + F+P + P + + K EW+ E + +
Sbjct: 183 NITPPKDLKQLQSILGLLNFARNFIPNFAELVQPLYNLIASAKGKYIEWSEENTKQLNMV 242
Query: 964 KELLSSPPILSKPMQGHPLHLYFAVSDSALSSVILQEGDGEHRVIYFVSHTLQGAEVRYK 1023
E L++ L + + L V+ S + + + + I ++++ AE+++
Sbjct: 243 IEALNTASNLEERLPEQ--RLVIKVNTSPSAGYVRYYNETGKKPIMYLNYVFSKAELKFS 300
Query: 1024 KIEKAALAV---LVTARRL---RPYFQSFPVRVRTDLPLRQVLQKPDMSGRLVAWSVELS 1077
+EK + L+ A L + P+ T + + ++ + R + W L
Sbjct: 301 MLEKLLTTMHKALIKAMDLAMGQEILVYSPIVSMTKIQKTPLPERKALPIRWITWMTYLE 360
Query: 1078 EYGLQ--YDKRGKVGAQSLADFVVELTPDRFERVDTQWTLFVDGSSNSSGSGTGVTLEGP 1135
+ +Q YDK + + D + + DGS+ S T G
Sbjct: 361 DPRIQFHYDKT-LPELKHIPDVYTSSQSPVKHPSQYEGVFYTDGSAIKSPDPTKSNNAGM 419
Query: 1136 GDLVLEQSLKFEFKATN-------NQAEYEALIAGLKLA--REVKI-GSLLIRTDSQLVE 1185
G ++ + K E++ N N A IA ++ A + +KI G +L+ TDS V
Sbjct: 420 G--IVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKIPGPVLVITDSFYVA 477
Query: 1186 NQVKGTFQVKDPNLIKYLE*VRYLMTLFQEVVVEYVPRTENQRADALAKLASTRKPDNNR 1245
N + + +KP +
Sbjct: 478 ESANKELPYWKSN----------------------------------GFVNNKKKPLKHI 503
Query: 1246 SVIQETLAFPSIEGELMACVDRGATWMGPILSI--------LAGDPAEVEQC-TKEQRRE 1296
S + S++ ++ ++G + P+ + LA + V C TK+ +
Sbjct: 504 SKWKSIAECLSMKPDITIQHEKGISLQIPVFILKGNALADKLATQGSYVVNCNTKKPNLD 563
Query: 1297 ASHYTLIDGHLYRRGFSAPL----------------LKCVPPEK-YEAIMSEVHEGMCAS 1339
A L+ GH Y +G+ +K +PP+ + I+ + H +
Sbjct: 564 AELDQLLQGH-YIKGYPKQYTYFLEDGKVKVSRPEGVKIIPPQSDRQKIVLQAHN---LA 619
Query: 1340 HIGGRSLACKVLRAGFYWPTLRKDCMDFVKKCKKCQVFADLSKAPPKELVTMSAPWPFAM 1399
H G + K+ ++WP +RKD + + +C++C + +KA L PF
Sbjct: 620 HTGREATLLKIANL-YWWPNMRKDVVKQLGRCQQCLITNASNKASGPILRPDRPQKPFDK 678
Query: 1400 WGVDLVGPFPIARSQMKFILVAVDYFTKWIEAEPL-AKITSAKIVNFYWKRIVCRFGIPR 1458
+ +D +GP P ++ + ++LV VD T + P A TSA + + ++ IP+
Sbjct: 679 FFIDYIGPLPPSQGYL-YVLVVVDGMTGFTWLYPTKAPSTSATVKSL---NVLTSIAIPK 734
Query: 1459 AIVSDNGTQFSSNQTREFCREMGIQMRFASVEHPQANGQVEYANRVILRGLRRRLKEAKG 1518
I SD G F+S+ E+ +E GI + F++ HPQ+ +VE N I R L + L
Sbjct: 735 VIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSGSKVERKNSDIKRLLTKLLVGRPT 794
Query: 1519 AWLEELPVVLWSYNTTVQSTTRETPFRMTYGVDAMLP 1555
W + LPVV + N T + TP ++ +G+D+ P
Sbjct: 795 KWYDLLPVVQLALNNTYSPVLKYTPHQLLFGIDSNTP 831
>POLY_DROME (P10401) Retrovirus-related Pol polyprotein from
transposon gypsy [Contains: Reverse transcriptase (EC
2.7.7.49); Endonuclease]
Length = 1035
Score = 152 bits (383), Expect = 1e-35
Identities = 115/408 (28%), Positives = 193/408 (47%), Gaps = 24/408 (5%)
Query: 701 VQQEVDKLLAAEFIREVKYPTWLANVVMVKKA-----NGKWLMCVDYTDLNKACPKDSYP 755
V EV +LL IR + P V+ KK N + +D+ LN+ D YP
Sbjct: 197 VNNEVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAFGNPNKRLVIDFRKLNEKTIPDRYP 256
Query: 756 LPSIDSLVDGASGNELLSLMDAYSGYHQIRMHPADEDKTAFMTARVNYCYRTMPFGLKNA 815
+PSI ++ + + +D SGYHQI + D +KT+F Y + +PFGL+NA
Sbjct: 257 MPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNA 316
Query: 816 GATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHNMRLNPEKC 875
+ +QR +D V Q+G+ VYVDD+I+ S DH + ++ + NMR++ EK
Sbjct: 317 SSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQEKT 376
Query: 876 SFGVQGGKFLGFMITSRGIEINPDKCKAIQQMKNPSNVKEVQRLTGRIAALSRFLPKSGD 935
F + ++LGF+++ G + +P+K KAIQ+ P V +V+ G + F+
Sbjct: 377 RFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAA 436
Query: 936 RSFPF-----------FKCLQKNAAFEWTAECEEAFVRLKELLSSPPILSK-PMQGHPLH 983
+ P K + K E+ AF RL+ +L+S ++ K P P
Sbjct: 437 IARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFD 496
Query: 984 LYFAVSDSALSSVILQEGDGEHRVIYFVSHTLQGAEVRYKKIEKAALAVLVTARRLRPY- 1042
L S S + +V+ QEG R I +S TL+ E Y E+ LA++ +L+ +
Sbjct: 497 LTTDASASGIGAVLSQEG----RPITMISRTLKQPEQNYATNERELLAIVWALGKLQNFL 552
Query: 1043 FQSFPVRVRTD-LPLRQVLQKPDMSGRLVAWSVELSEYGLQ-YDKRGK 1088
+ S + + TD PL + + + ++ W + ++ + + K GK
Sbjct: 553 YGSREINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHNAKVFYKPGK 600
Score = 45.1 bits (105), Expect = 0.002
Identities = 108/479 (22%), Positives = 182/479 (37%), Gaps = 69/479 (14%)
Query: 1118 DGSSNSSGSGTGVTL--EGPGDLVLEQSLKF-EFKATNNQAEYEALIAGLKLAREVKIGS 1174
D ++++S SG G L EG ++ ++LK E N+ E A++ L + GS
Sbjct: 496 DLTTDASASGIGAVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWALGKLQNFLYGS 555
Query: 1175 --LLIRTDSQLVENQVKGTFQVKDPNLIKYLE*VRYLMTLFQE-VVVEYVPRTENQRADA 1231
+ I TD Q + TF V D N ++ R+ + Q V Y P EN ADA
Sbjct: 556 REINIFTDHQPL------TFAVADRNTNAKIK--RWKSYIDQHNAKVFYKPGKENFVADA 607
Query: 1232 LAK--------------------------LASTRKPDN--NRSVIQETLAFP-------- 1255
L++ + +T KP N +I E FP
Sbjct: 608 LSRQNLNALQNEPQSDAATIHSELSLTYTVETTDKPLNCFRNQIILEAARFPLKRNLVLF 667
Query: 1256 -SIEGELMACVDRGATWMGPILS-ILAGDPAEVEQCTKEQRREASHYTL--IDGHLYRRG 1311
S L++ D+ +W+ L ++ D C H + +R
Sbjct: 668 RSKSRHLISFTDK--SWLLKTLKEVVNPDVVNAIHCDLPTLASFQHDLIAHFPATQFRHC 725
Query: 1312 FSAPLLKCVPPEKYEAIMSEVHEGMCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKKC 1371
+ L E+ E + +E + +H + +VLR +Y+P + + V C
Sbjct: 726 KNVVLDITDKNEQIEIVTAEHNR----AHRAAQENIKQVLR-DYYFPKMGSLAKEVVANC 780
Query: 1372 KKCQVFADLSKAPPKELVTMSAPWPFAMWGVDLVGPFPIARSQMKFILVAVDYFTKWIEA 1431
+ C A + P K+ + + P + ++V I + K L +D F+K+
Sbjct: 781 RVCTQ-AKYDRHPKKQELGET---PIPSYTGEMVH-IDIFSTDRKLFLTCIDKFSKYAIV 835
Query: 1432 EPLAKITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSNQTREFCRE-MGIQMRFASVE 1490
+P+ T I + I+ F + + DN F+S + GI + A
Sbjct: 836 QPVVSRTIVDITAPLLQ-IINLFPNIKTVYCDNEPAFNSETVTSMLKNSFGIDIVNAPPL 894
Query: 1491 HPQANGQVEYANRVILRGLR-RRLKEAKGAWLEELPVVLWSYNTTVQSTTRETPFRMTY 1548
H +NGQVE + + R +L + +E + YN TV S TRE P + +
Sbjct: 895 HSSSNGQVERFHSTLAEIARCLKLDKKTNDTVELILRATIEYNKTVHSVTRERPIEVVH 953
>POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 679
Score = 127 bits (319), Expect = 3e-28
Identities = 120/484 (24%), Positives = 208/484 (42%), Gaps = 28/484 (5%)
Query: 619 PIEDTKALKFGDRTLKIGTRLTEEQETRLTKLLGENLDLFAWSCKDMPGIDPN----FIC 674
P+E+ L G R + +T+++ ++ +LL + C + P +DPN ++
Sbjct: 184 PLEEIAILSEGRRLSEEKLFITQQRMQKIEELLEK-------VCSENP-LDPNKTKQWMK 235
Query: 675 HRLALNPSVKPVSQLRRRLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVVM---VKK 731
+ L+ K + + + +++ +LL + I+ K P ++ +K
Sbjct: 236 ASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEK 295
Query: 732 ANGKWLMCVDYTDLNKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGYHQIRMHPADE 791
GK M V+Y +NKA D+Y LP+ D L+ G ++ S D SG+ Q+ +
Sbjct: 296 RRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESR 355
Query: 792 DKTAFMTARVNYCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNM-EVYVDDMIVKSVRGL 850
TAF + +Y + +PFGLK A + +QR MD F +V R VYVDD++V S
Sbjct: 356 PLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAF--RVFRKFCCVYVDDILVFSNNEE 413
Query: 851 DHHQDLEEAFGEIRKHNMRLNPEKCSFGVQGGKFLGFMITSRGIEINPDKCKAIQQMKNP 910
DH + + +H + L+ +K + FLG I + + I + +
Sbjct: 414 DHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDT 473
Query: 911 -SNVKEVQRLTGRIAALSRFLPKSGDRSFPFFKCLQKNAAFEWTAECEEAFVRLKELLSS 969
+ K++QR G + S ++PK P L++N + WT E ++K+ L
Sbjct: 474 LEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWRWTKEDTLYMQKVKKNLQG 533
Query: 970 PPILSKPMQGHPLHLYFAVSD----SALSSVILQEGDGEHRVIYFVSHTLQGAEVRYKKI 1025
P L P+ L + SD L ++ + EG + + S + + AE Y
Sbjct: 534 FPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSN 593
Query: 1026 EKAALAVLVTARRLRPYFQSFPVRVRTD----LPLRQVLQKPDMS-GRLVAWSVELSEYG 1080
+K LAV+ T ++ Y +RTD + K D GR + W LS Y
Sbjct: 594 DKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYS 653
Query: 1081 LQYD 1084
+
Sbjct: 654 FDVE 657
>POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 679
Score = 127 bits (318), Expect = 3e-28
Identities = 120/484 (24%), Positives = 209/484 (42%), Gaps = 28/484 (5%)
Query: 619 PIEDTKALKFGDRTLKIGTRLTEEQETRLTKLLGENLDLFAWSCKDMPGIDPN----FIC 674
P+E+ L G R + +T+++ ++ +LL + C + P +DPN ++
Sbjct: 184 PLEEIAILSEGRRLSEEKLFITQQRMQKIEELLEK-------VCSENP-LDPNKTKQWMK 235
Query: 675 HRLALNPSVKPVSQLRRRLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVVM---VKK 731
+ L+ K + + + +++ +LL + I+ K P ++ +K
Sbjct: 236 ASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEK 295
Query: 732 ANGKWLMCVDYTDLNKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGYHQIRMHPADE 791
GK M V+Y +NKA D+Y LP+ D L+ G ++ S D SG+ Q+ +
Sbjct: 296 RRGKKRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESR 355
Query: 792 DKTAFMTARVNYCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNM-EVYVDDMIVKSVRGL 850
TAF + +Y + +PFGLK A + +QR MD F +V R VYVDD++V S
Sbjct: 356 PLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAF--RVFRKFCCVYVDDILVFSNNEE 413
Query: 851 DHHQDLEEAFGEIRKHNMRLNPEKCSFGVQGGKFLGFMITSRGIEINPDKCKAIQQMKNP 910
DH + + +H + L+ +K + FLG I + + I + +
Sbjct: 414 DHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDT 473
Query: 911 -SNVKEVQRLTGRIAALSRFLPKSGDRSFPFFKCLQKNAAFEWTAECEEAFVRLKELLSS 969
+ K++QR G + S ++PK P L++N ++WT E ++K+ L
Sbjct: 474 LEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQG 533
Query: 970 PPILSKPMQGHPLHLYFAVSD----SALSSVILQEGDGEHRVIYFVSHTLQGAEVRYKKI 1025
P L P+ L + SD L ++ + EG + + S + + AE Y
Sbjct: 534 FPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAERNYHSN 593
Query: 1026 EKAALAVLVTARRLRPYFQSFPVRVRTD----LPLRQVLQKPDMS-GRLVAWSVELSEYG 1080
+K LAV+ T ++ Y +RTD + K D GR + W LS Y
Sbjct: 594 DKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYS 653
Query: 1081 LQYD 1084
+
Sbjct: 654 FDVE 657
>POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 679
Score = 126 bits (317), Expect = 4e-28
Identities = 119/470 (25%), Positives = 203/470 (42%), Gaps = 21/470 (4%)
Query: 633 LKIGTRLTEEQETRLTKLLGENLDLFAWSCKDMPGIDPN----FICHRLALNPSVKPVSQ 688
L G RL+EE+ + + + +L C + P +DPN ++ + L+ K +
Sbjct: 191 LSEGRRLSEEKLFITQQRMQKIEELLEKVCSENP-LDPNKTKQWMKASIKLSDPSKAIKV 249
Query: 689 LRRRLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVVM---VKKANGKWLMCVDYTDL 745
+ + +++ +LL + I+ K P ++ +K GK M V+Y +
Sbjct: 250 KPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAM 309
Query: 746 NKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGYHQIRMHPADEDKTAFMTARVNYCY 805
NKA D+Y LP+ D L+ G ++ S D SG+ Q+ + TAF + +Y +
Sbjct: 310 NKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEW 369
Query: 806 RTMPFGLKNAGATYQRLMDRVFAGQVGRNM-EVYVDDMIVKSVRGLDHHQDLEEAFGEIR 864
+PFGLK A + +QR MD F +V R VYVDD++V S DH + +
Sbjct: 370 NVVPFGLKQAPSIFQRHMDEAF--RVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCN 427
Query: 865 KHNMRLNPEKCSFGVQGGKFLGFMITSRGIEINPDKCKAIQQMKNP-SNVKEVQRLTGRI 923
+H + L+ +K + FLG I + + I + + + K++QR G +
Sbjct: 428 QHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGIL 487
Query: 924 AALSRFLPKSGDRSFPFFKCLQKNAAFEWTAECEEAFVRLKELLSSPPILSKPMQGHPLH 983
S ++PK P L++N ++WT E ++K+ L P L P+ L
Sbjct: 488 TYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLI 547
Query: 984 LYFAVSD----SALSSVILQEGDGEHRVIYFVSHTLQGAEVRYKKIEKAALAVLVTARRL 1039
+ SD L ++ + EG + + S + + AE Y +K LAV+ T ++
Sbjct: 548 IETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAERNYHSNDKETLAVINTIKKF 607
Query: 1040 RPYFQSFPVRVRTD----LPLRQVLQKPDMS-GRLVAWSVELSEYGLQYD 1084
Y +RTD + K D GR + W LS Y +
Sbjct: 608 SIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVE 657
>POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 674
Score = 125 bits (313), Expect = 1e-27
Identities = 123/499 (24%), Positives = 211/499 (41%), Gaps = 26/499 (5%)
Query: 604 ENLDPRGEGRVNRPTPIEDTKALKFGDRTLKIGTRLTEEQETRLTKLLGENLDLFAWSCK 663
E++ R + + P I K L G RL+EE+ + + + +L C
Sbjct: 162 ESMKKRSKTQQPEPVNISTNKIA-----ILSEGRRLSEEKLFITQQRMQKIEELLEKVCS 216
Query: 664 DMPGIDPN----FICHRLALNPSVKPVSQLRRRLGGDKGKAVQQEVDKLLAAEFIREVKY 719
+ P +DPN ++ + L+ K + + + +++ +LL + I+ K
Sbjct: 217 ENP-LDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKS 275
Query: 720 PTWLANVVM---VKKANGKWLMCVDYTDLNKACPKDSYPLPSIDSLVDGASGNELLSLMD 776
P ++ +K GK M V+Y +NKA D+Y P+ D L+ G ++ S D
Sbjct: 276 PHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNPPNKDELLTLIRGKKIFSSFD 335
Query: 777 AYSGYHQIRMHPADEDKTAFMTARVNYCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNM- 835
SG+ Q+ + TAF + +Y + +PFGLK A + +QR MD F +V R
Sbjct: 336 CKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAF--RVFRKFC 393
Query: 836 EVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHNMRLNPEKCSFGVQGGKFLGFMITSRGIE 895
VYVDD++V S DH + + +H + L+ +K + FLG I +
Sbjct: 394 CVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHK 453
Query: 896 INPDKCKAIQQMKNP-SNVKEVQRLTGRIAALSRFLPKSGDRSFPFFKCLQKNAAFEWTA 954
+ I + + + K++QR G + S ++PK P L++N ++WT
Sbjct: 454 PQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTK 513
Query: 955 ECEEAFVRLKELLSSPPILSKPMQGHPLHLYFAVSD----SALSSVILQEGDGEHRVIYF 1010
E ++K+ L P L P+ L + SD L ++ + EG + +
Sbjct: 514 EDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRY 573
Query: 1011 VSHTLQGAEVRYKKIEKAALAVLVTARRLRPYFQSFPVRVRTD----LPLRQVLQKPDMS 1066
S + + AE Y +K LAV+ T ++ Y +RTD + K D
Sbjct: 574 ASGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSK 633
Query: 1067 -GRLVAWSVELSEYGLQYD 1084
GR + W LS Y +
Sbjct: 634 LGRNIRWQAWLSHYSFDVE 652
>POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 680
Score = 123 bits (308), Expect = 5e-27
Identities = 117/470 (24%), Positives = 201/470 (41%), Gaps = 21/470 (4%)
Query: 633 LKIGTRLTEEQETRLTKLLGENLDLFAWSCKDMPGIDPN----FICHRLALNPSVKPVSQ 688
L G RL+EE+ + + + +L C + P +DPN ++ + L+ K +
Sbjct: 192 LSEGRRLSEEKLFITQQRMQKTEELLEKVCSENP-LDPNKTKQWMKASIKLSDPSKAIKV 250
Query: 689 LRRRLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVVMVKKAN---GKWLMCVDYTDL 745
+ + +++ +LL + I+ K P ++ +A G M V+Y +
Sbjct: 251 KPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAENGRGNKRMVVNYKAM 310
Query: 746 NKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGYHQIRMHPADEDKTAFMTARVNYCY 805
NKA D+Y LP+ D L+ G ++ S D SG+ Q+ + TAF + +Y +
Sbjct: 311 NKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEW 370
Query: 806 RTMPFGLKNAGATYQRLMDRVFAGQVGRNM-EVYVDDMIVKSVRGLDHHQDLEEAFGEIR 864
+PFGLK A + +QR MD F +V R VYVDD++V S DH + +
Sbjct: 371 NVVPFGLKQAPSIFQRHMDEAF--RVFRKFCCVYVDDIVVFSNNEEDHLLHVAMILQKCN 428
Query: 865 KHNMRLNPEKCSFGVQGGKFLGFMITSRGIEINPDKCKAIQQMKNP-SNVKEVQRLTGRI 923
+H + L+ +K + FLG I + + I + + + K++QR G +
Sbjct: 429 QHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGIL 488
Query: 924 AALSRFLPKSGDRSFPFFKCLQKNAAFEWTAECEEAFVRLKELLSSPPILSKPMQGHPLH 983
S ++P P L++N ++WT E ++K+ L P L P+ L
Sbjct: 489 TYASDYIPNLAQMRQPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLI 548
Query: 984 LYFAVSD----SALSSVILQEGDGEHRVIYFVSHTLQGAEVRYKKIEKAALAVLVTARRL 1039
+ SD L ++ + EG + + S + + AE Y +K LAV+ T ++
Sbjct: 549 IETDASDDYWGGMLKAIKINEGTNTELICRYRSGSFKAAERNYHSNDKETLAVINTIKKF 608
Query: 1040 RPYFQSFPVRVRTD----LPLRQVLQKPDMS-GRLVAWSVELSEYGLQYD 1084
Y +RTD + K D GR + W LS Y +
Sbjct: 609 SIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVE 658
>POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1161
Score = 121 bits (303), Expect = 2e-26
Identities = 104/361 (28%), Positives = 164/361 (44%), Gaps = 34/361 (9%)
Query: 1317 LKCVPPEK-YEAIMSEVHEGMCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKKCKKCQ 1375
++ VPP+ E I+S H +H G + KV + ++WP LRKD + +++CK+C
Sbjct: 807 IRIVPPKADREKIISTAHN---IAHTGRDATFLKV-SSKYWWPNLRKDVVKSIRQCKQCL 862
Query: 1376 VFADLSKAPPKELVTMSAPWPFAMWGVDLVGPFPIARSQMKFILVAVDYFTKWIEAEPL- 1434
V + P L + PF + +D +GP P + + +LV VD T ++ P
Sbjct: 863 VTNATNLTSPPILRPVKPLKPFDKFYIDYIGPLPPSNGYLH-VLVVVDSMTGFVWLYPTK 921
Query: 1435 AKITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSNQTREFCREMGIQMRFASVEHPQA 1494
A TSA + ++ IP+ + SD G F+S+ ++ +E GIQ+ F++ HPQ+
Sbjct: 922 APSTSATVKAL---NMLTSIAIPKVLHSDQGAAFTSSTFADWAKEKGIQLEFSTPYHPQS 978
Query: 1495 NGQVEYANRVILRGLRRRLKEAKGAWLEELPVVLWSYNTTVQSTTRETPFRMTYGVDAML 1554
+G+VE N I R L + L W + LPVV + N + +++ TP ++ +GVD+
Sbjct: 979 SGKVERKNSDIKRLLTKLLIGRPAKWYDLLPVVQLALNNSYSPSSKYTPHQLLFGVDSNT 1038
Query: 1555 P-AEIDNFTWRTEPDFEGENQANMAAELDLLSETRDEAHIRETAMKQRVAAKFNSRVRVR 1613
P A D E EL LL E R H Q + +S R
Sbjct: 1039 PFANSDTLDLSRE------------EELSLLQEIRSSLH-------QPTSPPASS--RSW 1077
Query: 1614 DMQVGDLVLKWRSGASGNKLTPNWEGPYRIIKVLGNEAYHLEELDGRRLPRSFNGLSLRY 1673
VG LV + A L P W P I++V+ + + G R S + L L
Sbjct: 1078 SPSVGQLVQE--RVARPASLRPRWHKPTAILEVVNPRTVIILDHLGNRRTVSVDNLKLTA 1135
Query: 1674 Y 1674
Y
Sbjct: 1136 Y 1136
Score = 87.0 bits (214), Expect = 4e-16
Identities = 111/522 (21%), Positives = 204/522 (38%), Gaps = 40/522 (7%)
Query: 679 LNPSVKPVSQLRRRLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVVMVKKANGKWLM 738
+NP KP ++Q +D LL + + + T V V K +GKW M
Sbjct: 182 INPKAKP--------------SIQIVIDDLLKQGVLIQ-QNSTMNTPVYPVPKPDGKWRM 226
Query: 739 CVDYTDLNKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGYHQIRMHPADEDKTAFMT 798
+DY ++NK P + ++ + + +D +G+ + P TAF
Sbjct: 227 VLDYREVNKTIPLIAAQNQHSAGILSSIYRGKYKTTLDLTNGFWAHPITPESYWLTAFTW 286
Query: 799 ARVNYCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEE 858
YC+ +P G N+ A + D V + N++ YVDD+ + +H + LE+
Sbjct: 287 QGKQYCWTRLPQGFLNSPALFTA--DVVDLLKEIPNVQAYVDDIYISHDDPQEHLEQLEK 344
Query: 859 AFGEIRKHNMRLNPEKCSFGVQGGKFLGFMITSRGIEINPDKCKAIQQMKNPSNVKEVQR 918
F + ++ +K + +FLGF IT G + + + + P ++K++Q
Sbjct: 345 IFSILLNAGYVVSLKKSEIAQREVEFLGFNITKEGRGLTDTFKQKLLNITPPKDLKQLQS 404
Query: 919 LTGRIAALSRFLPKSGDRSFPFFKCL-QKNAAF-EWTAECEEAFVRLKELLSSPPILSKP 976
+ G + F+P + P + + N F WT + + +L+ L +
Sbjct: 405 ILGLLNFARNFIPNYSELVKPLYTIVANANGKFISWTEDNSNQLQHIISVLNQADNLEE- 463
Query: 977 MQGHPLHLYFAVSDSALSSVILQEGDGEHRVIYFVSHTLQGAEVRYKKIEKAALAV---L 1033
+ L V+ S + I +G R I +V++ AE ++ + EK + L
Sbjct: 464 -RNPETRLIIKVNSSPSAGYIRYYNEGSKRPIMYVNYIFSKAEAKFTQTEKLLTTMHKGL 522
Query: 1034 VTARRL---RPYFQSFPVRVRTDLPLRQVLQKPDMSGRLVAWSVELSEYGLQ--YDKRGK 1088
+ A L + P+ T + + ++ + R + W L + +Q YDK
Sbjct: 523 IKAMDLAMGQEILVYSPIVSMTKIQRTPLPERKALPVRWITWMTYLEDPRIQFHYDK-SL 581
Query: 1089 VGAQSLADFVVELTPDRFERVDTQWTLFVDGS---------SNSSGSGTGVTLEGPGDLV 1139
Q + + ++ + + DGS S+S+G G P +
Sbjct: 582 PELQQIPNVTEDVIAKTKHPSEFAMVFYTDGSAIKHPDVNKSHSAGMGIAQVQFIPEYKI 641
Query: 1140 LEQSLKFEFKATNNQAEYEALIAGLKLAREVKIGSLLIRTDS 1181
+ Q T AE A+ K A ++ G +LI TDS
Sbjct: 642 VHQWSIPLGDHTAQLAEIAAVEFACKKALKIS-GPVLIVTDS 682
>POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1157
Score = 120 bits (300), Expect = 4e-26
Identities = 99/360 (27%), Positives = 161/360 (44%), Gaps = 34/360 (9%)
Query: 1318 KCVPPEKYEA-IMSEVHEGMCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKKCKKCQV 1376
+ +PP+ I+ + H +H G S KV + ++WP LRKD + +++CK+C V
Sbjct: 810 RIIPPKSDRPQIILQAHN---IAHTGRDSTFLKV-SSKYWWPNLRKDVVKVIRQCKQCLV 865
Query: 1377 FADLSKAPPKELVTMSAPWPFAMWGVDLVGPFPIARSQMKFILVAVDYFTKWIEAEPL-A 1435
+ A P L PF + +D +GP P + + +LV VD T ++ P A
Sbjct: 866 TNAATLAAPPILRPERPVKPFDKFFIDYIGPLPPSNGYLH-VLVVVDSMTGFVWLYPTKA 924
Query: 1436 KITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSNQTREFCREMGIQMRFASVEHPQAN 1495
TSA + ++ +P+ I SD G F+S ++ + GIQ+ F++ HPQ++
Sbjct: 925 PSTSATVKAL---NMLTSIAVPKVIHSDQGAAFTSATFADWAKNKGIQLEFSTPYHPQSS 981
Query: 1496 GQVEYANRVILRGLRRRLKEAKGAWLEELPVVLWSYNTTVQSTTRETPFRMTYGVDAMLP 1555
G+VE N I R L + L W + LPVV + N + +++ TP ++ +G+D+ P
Sbjct: 982 GKVERKNSDIKRLLTKLLVGRPAKWYDLLPVVQLALNNSYSPSSKYTPHQLLFGIDSNTP 1041
Query: 1556 -AEIDNFTWRTEPDFEGENQANMAAELDLLSETRDEAHIRETAMKQRVAAKFNSRVRVRD 1614
A D E EL LL E R ++ T + +R
Sbjct: 1042 FANSDTLDLSRE------------EELSLLQEIRSSLYLPSTP---------PASIRAWS 1080
Query: 1615 MQVGDLVLKWRSGASGNKLTPNWEGPYRIIKVLGNEAYHLEELDGRRLPRSFNGLSLRYY 1674
VG LV + A L P W P +++V+ A + + G R S + L L Y
Sbjct: 1081 PSVGQLVQE--RVARPASLRPRWHKPTPVLEVINPRAVVILDHLGNRRTVSVDNLKLTAY 1138
Score = 84.3 bits (207), Expect = 3e-15
Identities = 79/370 (21%), Positives = 152/370 (40%), Gaps = 14/370 (3%)
Query: 726 VVMVKKANGKWLMCVDYTDLNKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGYHQIR 785
V V K +GKW M +DY ++NK P + ++ + + +D +G+
Sbjct: 216 VYPVPKPDGKWRMVLDYREVNKTIPLIAAQNQHSAGILSSIFRGKYKTTLDLSNGFWAHS 275
Query: 786 MHPADEDKTAFMTARVNYCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVK 845
+ P TAF YC+ +P G N+ A + D V + N++VYVDD+ +
Sbjct: 276 ITPESYWLTAFTWLGQQYCWTRLPQGFLNSPALFTA--DVVDLLKEVPNVQVYVDDIYIS 333
Query: 846 SVRGLDHHQDLEEAFGEIRKHNMRLNPEKCSFGVQGGKFLGFMITSRGIEINPDKCKAIQ 905
+H + LE+ F + ++ +K +FLGF IT G + + +
Sbjct: 334 HDDPREHLEQLEKVFSLLLNAGYVVSLKKSEIAQHEVEFLGFNITKEGRGLTETFKQKLL 393
Query: 906 QMKNPSNVKEVQRLTGRIAALSRFLPKSGDRSFPFFKCL--QKNAAFEWTAECEEAFVRL 963
+ P ++K++Q + G + F+P + P + + WT + + +
Sbjct: 394 NITPPRDLKQLQSILGLLNFARNFIPNFSELVKPLYNIIATANGKYITWTTDNSQQLQNI 453
Query: 964 KELLSSPPILSKPMQGHPLHLYFAVSDSALSSVILQEGDGEHRVIYFVSHTLQGAEVRYK 1023
+L+S L + + + L V+ S + I + R I ++++ AEV++
Sbjct: 454 ISMLNSAENLEE--RNPEVRLIMKVNTSPSAGYIRFYNEFAKRPIMYLNYVYTKAEVKFT 511
Query: 1024 KIEKAALAV---LVTARRL---RPYFQSFPVRVRTDLPLRQVLQKPDMSGRLVAWSVELS 1077
EK + L+ A L + P+ T + + ++ + R + W L
Sbjct: 512 NTEKLLTTIHKGLIKALDLGMGQEILVYSPIVSMTKIQKTPLPERKALPIRWITWMSYLE 571
Query: 1078 EYGLQ--YDK 1085
+ +Q YDK
Sbjct: 572 DPRIQFHYDK 581
>POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 666
Score = 119 bits (298), Expect = 7e-26
Identities = 105/384 (27%), Positives = 166/384 (42%), Gaps = 29/384 (7%)
Query: 730 KKANGKWLMCVDYTDLNKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGYHQIRMHPA 789
++ GK M V+Y +N+A DS+ LP++ L+ G + S D SG+ Q+ +
Sbjct: 287 ERRRGKKRMVVNYKAINQATIGDSHNLPNMQELLTLLRGKSIFSSFDCKSGFWQVVLDEE 346
Query: 790 DEDKTAFMTARVNYCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRG 849
+ TAF + ++ ++ +PFGLK A + +QR M G + VYVDD+IV S
Sbjct: 347 SQKLTAFTCPQGHFQWKVVPFGLKQAPSIFQRHMQTALNG-ADKFCMVYVDDIIVFSNSE 405
Query: 850 LDHHQDLEEAFGEIRKHNMRLNPEKCSFGVQGGKFLGFMITS----------RGIEINPD 899
LDH+ + + K+ + L+ +K + + FLG I I PD
Sbjct: 406 LDHYNHVYAVLKIVEKYGIILSKKKANLFKEKINFLGLEIDKGTHCPQNHILENIHKFPD 465
Query: 900 KCKAIQQMKNPSNVKEVQRLTGRIAALSRFLPKSGDRSFPFFKCLQKNAAFEWTAECEEA 959
+ + + K +QR G + ++PK + P L+K+ + WT +
Sbjct: 466 RLE---------DKKHLQRFLGVLTYAETYIPKLAEIRKPLQVKLKKDVTWNWTQSDSDY 516
Query: 960 FVRLKELLSSPPILSKPMQGHPLHLYFAVSDSALSSVILQEG-DGEHRVIYFVSHTLQGA 1018
++K+ L S P L P L + SDS V+ DG + + S + + A
Sbjct: 517 VKKIKKNLGSFPKLYLPKPEDHLIIETDASDSFWGGVLKARALDGVELICRYSSGSFKQA 576
Query: 1019 EVRYKKIEKAALAVLVTARRLRPYFQSFPVRVRTDLP-----LRQVLQKPDMSGRLVAWS 1073
E Y +K LAV + Y VRTD LR L+ GRLV W
Sbjct: 577 EKNYHSNDKELLAVKQVITKFSAYLTPVRFTVRTDNKNFTYFLRINLKGDSKQGRLVRWQ 636
Query: 1074 VELSEYGLQYDKRGKVGAQS-LAD 1096
S+Y Q+D G ++ LAD
Sbjct: 637 NWFSKY--QFDVEHLEGVKNVLAD 658
>YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II
Length = 1268
Score = 112 bits (279), Expect = 1e-23
Identities = 74/249 (29%), Positives = 128/249 (50%), Gaps = 7/249 (2%)
Query: 685 PVSQLRRRLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVVMVKK-ANGKWLMCVDY- 742
PV + R + +AV+ E+++L I + Y W A +V++KK GK +C D+
Sbjct: 440 PVFKRARPVPYGSLEAVETELNRLQEMGVIVPITYAKWAAPIVVIKKKGTGKIRVCADFK 499
Query: 743 -TDLNKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGYHQIRMHPADEDKTAFMTARV 801
+ LN A + +PLP+ + + G + S +D Y Q+ + + T R
Sbjct: 500 CSGLNAALKDEFHPLPTSEDIFSRLKGT-VYSQIDLKDAYLQVELDEEAQKLAVINTHRG 558
Query: 802 NYCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFG 861
+ Y M FGLK A A++Q++MD++ +G G + VY DD+I+ + +H + L E F
Sbjct: 559 IFKYLRMTFGLKPAPASFQKIMDKMVSGLTG--VAVYWDDIIISASSIEEHEKILRELFE 616
Query: 862 EIRKHNMRLNPEKCSFGVQGGKFLGFMITSRGIEINPDKCKAIQQMKNPSNVKEVQRLTG 921
+++ R++ EKC+F + FLGF + G + K +AI+ MK P++ K++ G
Sbjct: 617 RFKEYGFRVSAEKCAFAQKQVTFLGF-VDEHGRRPDSKKTEAIRSMKAPTDQKQLASFLG 675
Query: 922 RIAALSRFL 930
LSR +
Sbjct: 676 AADWLSRMM 684
Score = 77.0 bits (188), Expect = 4e-13
Identities = 64/236 (27%), Positives = 105/236 (44%), Gaps = 24/236 (10%)
Query: 1320 VPPEKYEAIMSEVHEGMCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKKCKKCQVFAD 1379
VP + ++ ++HEG H G + K R+ +W L D + V+ C CQ +
Sbjct: 778 VPKSLQKIVLKQLHEG----HPGIVQMKQKA-RSFVFWRGLDSDIENMVRHCNNCQENSK 832
Query: 1380 LSKAPPKELVTMSAPWPF--AMWG---VDLVGPFPIARSQMKFILVAVDYFTKWIEAEPL 1434
+ + P PWP A W +D GP ++LV VD TK+ E +
Sbjct: 833 MPRVVPLN------PWPVPEAPWKRIHIDFAGPLNGC-----YLLVVVDAKTKYAEVKLT 881
Query: 1435 AKITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSNQTREFCREMGIQMRFASVEHPQA 1494
I++ ++ + I G P I+SDNGTQ +S+ + C+ GI+ + ++V +P++
Sbjct: 882 RSISAVTTIDLL-EEIFSIHGYPETIISDNGTQLTSHLFAQMCQSHGIEHKTSAVYYPRS 940
Query: 1495 NGQVEYANRVILRGLRRRLKEAKGAWLEELPVVLWSYNTTVQSTTR-ETPFRMTYG 1549
NG E + RG+ ++K + L L SY T S TP +G
Sbjct: 941 NGAAERFVDTLKRGI-AKIKGEGSVNQQILNKFLISYRNTPHSALNGSTPAECHFG 995
>POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 659
Score = 110 bits (275), Expect = 3e-23
Identities = 131/545 (24%), Positives = 227/545 (41%), Gaps = 46/545 (8%)
Query: 587 KKSALVGH--RCYEIEASDENLDPRGEGRVNRPTPIEDT--KALKFGDRTLKIGTRLTEE 642
K+S ++G + Y+ + + +VNRP PI T + L + + L E
Sbjct: 127 KQSVIIGKITKAYQYGVKGFLESMKKKSKVNRPEPINITSNQHLFLEEGGNHVDEMLYEI 186
Query: 643 Q-------ETRLTKLLGEN-LD---LFAWSCKDMPGIDPNFICHRLALNPSVKPVSQLRR 691
Q E L ++ EN +D W + IDP + VKP+S
Sbjct: 187 QISKFSAIEEMLERVSSENPIDPEKSKQWMTATIELIDPKTVV-------KVKPMSY--- 236
Query: 692 RLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVVMVK----KANGKWLMCVDYTDLNK 747
+ +++ +LL + I+ K T ++ +V+ + GK M V+Y +NK
Sbjct: 237 --SPSDREEFDRQIKELLELKVIKPSK-STHMSPAFLVENEAERRRGKKRMVVNYKAMNK 293
Query: 748 ACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGYHQIRMHPADEDKTAFMTARVNYCYRT 807
A D++ LP+ D L+ G ++ S D SG Q+ + + TAF + +Y +
Sbjct: 294 ATKGDAHNLPNKDELLTLVRGKKIYSSFDCKSGLWQVLLDKESQLLTAFTCPQGHYQWNV 353
Query: 808 MPFGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRG-LDHHQDLEEAFGEIRKH 866
+PFGLK A + + + + Q + VYVDD++V S G +H+ + K
Sbjct: 354 VPFGLKQAPSIFPKTYANSHSNQYSKYCCVYVDDILVFSNTGRKEHYIHVLNILRRCEKL 413
Query: 867 NMRLNPEKCSFGVQGGKFLGFMITSRGIEINPDKCKAIQQMKNPSNV---KEVQRLTGRI 923
+ L+ +K + FLG I +G P K P + K++QR G +
Sbjct: 414 GIILSKKKAQLFKEKINFLGLEI-DQGTHC-PQNHILEHIHKFPDRIEDKKQLQRFLGIL 471
Query: 924 AALSRFLPKSGDRSFPFFKCLQKNAAFEWTAECEEAFVRLKELLSSPPILSKPMQGHPLH 983
S ++PK P L++++ + W + ++K+ L S P L P L
Sbjct: 472 TYASDYIPKLASIRKPLQSKLKEDSTWTWNDTDSQYMAKIKKNLKSFPKLYHPEPNDKLV 531
Query: 984 LYFAVSDSALSSVILQEGDGEHRVIYFVSHTLQGAEVRYKKIEKAALAVLVTARRLRPYF 1043
+ S+ ++ + + + S + + AE Y EK LAV+ ++ Y
Sbjct: 532 IETDASEEFWGGILKAIHNSHEYICRYASGSFKAAERNYHSNEKELLAVIRVIKKFSIYL 591
Query: 1044 QSFPVRVRTDLP-----LRQVLQKPDMSGRLVAWSVELSEYGLQYDKRGKVGAQSL-ADF 1097
+RTD + L+ GRLV W + LS+Y +D G +++ ADF
Sbjct: 592 TPSRFLIRTDNKNFTHFVNINLKGDRKQGRLVRWQMWLSQY--DFDVEHIAGTKNVFADF 649
Query: 1098 VVELT 1102
+ E T
Sbjct: 650 LQENT 654
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.319 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 198,331,893
Number of Sequences: 164201
Number of extensions: 8662574
Number of successful extensions: 22401
Number of sequences better than 10.0: 214
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 124
Number of HSP's that attempted gapping in prelim test: 21738
Number of HSP's gapped (non-prelim): 532
length of query: 1675
length of database: 59,974,054
effective HSP length: 124
effective length of query: 1551
effective length of database: 39,613,130
effective search space: 61439964630
effective search space used: 61439964630
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 73 (32.7 bits)
Lotus: description of TM0151.7