BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0151.11
(1562 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 462 e-129
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 301 7e-81
YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein 159 4e-38
M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810... 150 3e-35
YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B) 111 1e-23
YJZ9_YEAST (P47100) Transposon Ty1 protein B 105 1e-21
YMU0_YEAST (Q04670) Transposon Ty1 protein B 102 8e-21
YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein 102 8e-21
YMT5_YEAST (Q04214) Transposon Ty1 protein B 101 1e-20
YME4_YEAST (Q04711) Transposon Ty1 protein B 101 1e-20
YMD9_YEAST (Q03434) Transposon Ty1 protein B 101 2e-20
YJZ7_YEAST (P47098) Transposon Ty1 protein B 99 7e-20
M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820... 99 9e-20
M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240... 66 7e-10
POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.2... 61 2e-08
M710_ARATH (P92512) Hypothetical mitochondrial protein AtMg00710... 58 2e-07
POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse transcript... 55 1e-06
POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.2... 52 1e-05
ATRX_CAEEL (Q9U7E0) Transcriptional regulator ATRX homolog (X-li... 52 1e-05
POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.2... 51 3e-05
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 462 bits (1190), Expect = e-129
Identities = 307/950 (32%), Positives = 493/950 (51%), Gaps = 54/950 (5%)
Query: 609 WYLDSGCSRHMTGESRMFQELKLKPGGEVGFGGNEKGKIVGTGTICVDSSP----CIDNV 664
W +D+ S H T +F G V G KI G G IC+ ++ + +V
Sbjct: 294 WVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDV 353
Query: 665 LLVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGS-VLFNSKRKNNIYKIR--LSE 721
V L NL+S L GY+ F + R GS V+ + +Y+ + +
Sbjct: 354 RHVPDLRMNLISGIALDRDGYESYFANQKWRLTK---GSLVIAKGVARGTLYRTNAEICQ 410
Query: 722 LEAQNVKCLLSVNEEQWVWHRRLGHASMRKISQLSKLNLVRGLPNLKFASDALCEACQKG 781
E + +SV+ +WH+R+GH S + + L+K +L+ K + C+ C G
Sbjct: 411 GELNAAQDEISVD----LWHKRMGHMSEKGLQILAKKSLIS---YAKGTTVKPCDYCLFG 463
Query: 782 KFTKVPFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLTRK 841
K +V F+ + + L+L++ D+ GP++ ES+GG +Y + +DD SR WV L K
Sbjct: 464 KQHRVSFQTSSERKLNI-LDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTK 522
Query: 842 DESHVVFSTFIAQVQNEKACRIVRVRSDHGGE-----FESLFDSYGIAHDFSCPRTPQQN 896
D+ VF F A V+ E ++ R+RSD+GGE FE S+GI H+ + P TPQ N
Sbjct: 523 DQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHN 582
Query: 897 GVVERKNRTLQEMARTMLQETGMAKHFLAEAVNTACYIQNRISVRPILNKTPYELWKNIK 956
GV ER NRT+ E R+ML+ + K F EAV TACY+ NR P+ + P +W N +
Sbjct: 583 GVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKE 642
Query: 957 PNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSERSKGFRFYNTDAKTIEESIHV 1016
+ S+ FGC + K++ K D KS C+ +GY + G+R ++ K + S V
Sbjct: 643 VSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDV 702
Query: 1017 RFDD---KLDSDQSKLVEK-FADLSINVSDKGKAPEEAEPEEDEPEEEAGP-----SDSQ 1067
F + + +D S+ V+ + + P AE DE E+ +
Sbjct: 703 VFRESEVRTAADMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQGE 762
Query: 1068 TLKKSRITAAHPKELILGNKDEPVRTRSAFRPYEETLLSLKGLVSLI----EPKSIDEAL 1123
L + HP + +++ R + RP E+ LI EP+S+ E L
Sbjct: 763 QLDEGVEEVEHPTQ----GEEQHQPLRRSERPRVESRRYPSTEYVLISDDREPESLKEVL 818
Query: 1124 Q--DKDWIL-AMEEELNQFSKNDVWSLVKKPESVHVIGTKWVFRNKLNEKGDVVRNKARL 1180
+K+ ++ AM+EE+ KN + LV+ P+ + KWVF+ K + +VR KARL
Sbjct: 819 SHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARL 878
Query: 1181 VAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYV 1240
V +G+ Q++GID+ E F+PV ++ +IR ++S + + ++ + Q+DVK+AFL+G + EE+Y+
Sbjct: 879 VVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYM 938
Query: 1241 HQPLGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTY- 1299
QP GFE K V KL KSLYGLKQAPR WY + SF+ +++ D ++ K +
Sbjct: 939 EQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFS 998
Query: 1300 KDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQV--DQTPEGT 1357
+++ +I+ +YVDD++ ++ L + + F+M +G + LG+++ ++T
Sbjct: 999 ENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKL 1058
Query: 1358 YIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKE------DKSGKVCQKLYRGMIGSL 1411
++ Q KY + +L++FNM + TP+ L K+ ++ G + + Y +GSL
Sbjct: 1059 WLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSL 1118
Query: 1412 LY-LTASRPDILFSVHLCARFQSDPRETHLTAIKRILRYLKGTTNLGLMYKKTSEYKLSG 1470
+Y + +RPDI +V + +RF +P + H A+K ILRYL+GTT L + S+ L G
Sbjct: 1119 MYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCF-GGSDPILKG 1177
Query: 1471 YCDAHYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISA 1520
Y DA AGD RKS++G +SW SK Q +ALST EAEYI+A
Sbjct: 1178 YTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAA 1227
Score = 53.9 bits (128), Expect = 3e-06
Identities = 68/306 (22%), Positives = 120/306 (38%), Gaps = 60/306 (19%)
Query: 17 GQRFEYWKDRMESFFLGFDADLWDIIVD-GYERPVDADGKKIPRSEMTADQKKLYSQHHK 75
G ++E K ++ F + + D+++ G + +D D KK P + D L +
Sbjct: 3 GVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKK-PDTMKAEDWADL---DER 58
Query: 76 ARAILLSAISYEEYQKITDREFAKGIF---ESLKMSHEGNKKVKESKALSLIQKYESFIM 132
A + + +S + I D + A+GI+ ESL MS K+ K L + M
Sbjct: 59 AASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALH------M 112
Query: 133 EPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRVIRCLPESWMPLVTSIELTRDVENM 192
+ + F L+ + L +D I ++ LP S+ L T+I
Sbjct: 113 SEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTI--------- 163
Query: 193 SLEELISILKCHELKRSEMQDLRKKSIALKSKSEKAKAEKSKALQAEEEESEEASEDSDE 252
H E++D+ ++ L K K + +AL
Sbjct: 164 ----------LHGKTTIELKDVTS-ALLLNEKMRKKPENQGQAL---------------- 196
Query: 253 DELTLISKRLNRIWKHRQSKYKGSGKAKGKSESSGQKKSSLKEVTCFECKESGHYKSDCP 312
I++ R ++ + Y SG A+GKS++ +S + C+ C + GH+K DCP
Sbjct: 197 -----ITEGRGRSYQRSSNNYGRSG-ARGKSKN----RSKSRVRNCYNCNQPGHFKRDCP 246
Query: 313 KLKKDK 318
+K K
Sbjct: 247 NPRKGK 252
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 301 bits (772), Expect = 7e-81
Identities = 178/506 (35%), Positives = 284/506 (55%), Gaps = 31/506 (6%)
Query: 1041 SDKGKAPEEAEPEEDEPEEEAGPSDSQTLKKSRITAAHPKEL------------ILGNKD 1088
S+K E + + D+ E+ S + + TA H KE+ I+ +
Sbjct: 799 SNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEIINRRS 858
Query: 1089 EPVRTRSAFRPYEETLLSLKGLVSLIE------PKSIDEALQDKD---WILAMEEELNQF 1139
E ++T+ Y E SL +V P S DE D W A+ ELN
Sbjct: 859 ERLKTKPQIS-YNEEDNSLNKVVLNAHTIFNDVPNSFDEIQYRDDKSSWEEAINTELNAH 917
Query: 1140 SKNDVWSLVKKPESVHVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAP 1199
N+ W++ K+PE+ +++ ++WVF K NE G+ +R KARLVA+G++Q+ IDY ETFAP
Sbjct: 918 KINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAP 977
Query: 1200 VARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPLGFEDEKKPDHVFKLK 1259
VAR+ + R ++S + +N+ +HQMDVK+AFLNG + EE+Y+ P G D+V KL
Sbjct: 978 VARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGISCNS--DNVCKLN 1035
Query: 1260 KSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFC--KTYKDDILIVQIYVDDIIFGS 1317
K++YGLKQA R W+E L E EFV VD ++ K ++ + V +YVDD++ +
Sbjct: 1036 KAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIAT 1095
Query: 1318 ANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLES 1377
+ + F + +F M+ + E+K+F+GI+++ + Y+ QS Y K++L KFNM
Sbjct: 1096 GDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENC 1155
Query: 1378 TVAKTPMHPTCILEKEDKSGKVCQKLYRGMIGSLLY-LTASRPDILFSVHLCARFQSDPR 1436
TP+ P+ I + S + C R +IG L+Y + +RPD+ +V++ +R+ S
Sbjct: 1156 NAVSTPL-PSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNN 1214
Query: 1437 ETHLTAIKRILRYLKGTTNLGLMYKK--TSEYKLSGYCDAHYAGDRTERKSTSGNC-QFL 1493
+KR+LRYLKGT ++ L++KK E K+ GY D+ +AG +RKST+G +
Sbjct: 1215 SELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMF 1274
Query: 1494 GSNLVSWASKRQSTIALSTAEAEYIS 1519
NL+ W +KRQ+++A S+ EAEY++
Sbjct: 1275 DFNLICWNTKRQNSVAASSTEAEYMA 1300
Score = 172 bits (437), Expect = 5e-42
Identities = 123/411 (29%), Positives = 210/411 (50%), Gaps = 29/411 (7%)
Query: 611 LDSGCSRHMTGESRMFQE-LKLKPGGEVGFGGNEKGKIV-----GTGTICVDSSPCIDNV 664
LDSG S H+ + ++ + +++ P ++ ++G+ + G + D +++V
Sbjct: 291 LDSGASDHLINDESLYTDSVEVVPPLKIAVA--KQGEFIYATKRGIVRLRNDHEITLEDV 348
Query: 665 LLVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELEA 724
L NL+S+ +L + G + F+ KS +S+ V+ NS NN+ I +A
Sbjct: 349 LFCKEAAGNLMSVKRLQEAGMSIEFD-KSGVTISKNGLMVVKNSGMLNNVPVINF---QA 404
Query: 725 QNVKCLLSVNEEQWVWHRRLGHASMRKISQLSKLNLVRG---LPNLKFASDALCEACQKG 781
++ N +WH R GH S K+ ++ + N+ L NL+ + + +CE C G
Sbjct: 405 YSINAKHKNNFR--LWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCE-ICEPCLNG 461
Query: 782 KFTKVPFKA-KNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLTR 840
K ++PFK K+ RPL ++H D+ GP+ ++ K Y ++ VD ++ + +
Sbjct: 462 KQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKY 521
Query: 841 KDESHVVFSTFIAQVQNEKACRIVRVRSDHGGEFES-----LFDSYGIAHDFSCPRTPQQ 895
K + +F F+A+ + ++V + D+G E+ S GI++ + P TPQ
Sbjct: 522 KSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQL 581
Query: 896 NGVVERKNRTLQEMARTMLQETGMAKHFLAEAVNTACYIQNRISVRPIL--NKTPYELWK 953
NGV ER RT+ E ARTM+ + K F EAV TA Y+ NRI R ++ +KTPYE+W
Sbjct: 582 NGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWH 641
Query: 954 NIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSERSKGFRFYN 1004
N KP + + FG YV + K++ KFD KS K + +GY GF+ ++
Sbjct: 642 NKKPYLKHLRVFGATVYV-HIKNKQGKFDDKSFKSIFVGY--EPNGFKLWD 689
Score = 43.9 bits (102), Expect = 0.003
Identities = 69/332 (20%), Positives = 124/332 (36%), Gaps = 71/332 (21%)
Query: 9 NAKPPMFDGQRFEYWKDRMESFFLGFDADLWDIIVDGYERPVDADGKKIPRSEMTADQKK 68
N KP FDG+++ WK R+ + + D+ ++ VD KK R
Sbjct: 7 NIKP--FDGEKYAIWKFRIRALLA--EQDVLKVVDGLMPNEVDDSWKKAERC-------- 54
Query: 69 LYSQHHKARAILLSAISYEEYQKITDREFAKGIFESLKMSHEGNKKVKESKALSLIQKYE 128
A++ ++ +S T A+ I E+L +E + L+L ++
Sbjct: 55 -------AKSTIIEYLSDSFLNFATSDITARQILENLDAVYERKSLASQ---LALRKRLL 104
Query: 129 SFIMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRVIRCLPESWMPLVTSIELTRD 188
S + S+ F F L++ + D + ++ LP + ++T+IE T
Sbjct: 105 SLKLSSEMSLLSHFHIFDELISELLAAGAKIEEMDKISHLLITLPSCYDGIITAIE-TLS 163
Query: 189 VENMSLEELISILKCHELK-RSEMQDLRKKSIALKSKSEKAKAEKSKALQAEEEESEEAS 247
EN++L + + L E+K +++ D KK + A+ + +
Sbjct: 164 EENLTLAFVKNRLLDQEIKIKNDHNDTSKKVM--------------NAIVHNNNNTYK-- 207
Query: 248 EDSDEDELTLISKRLNRIWKHRQSKYKGSGKAKGKSESSGQKKSSLKEVTCFECKESGHY 307
N ++K+R +K K K K +V C C GH
Sbjct: 208 ---------------NNLFKNRVTKPKKIFKGNSK-----------YKVKCHHCGREGHI 241
Query: 308 KSDCPKLK-----KDKKPKKHFKTKKSLMVTF 334
K DC K K+K+ +K +T S + F
Sbjct: 242 KKDCFHYKRILNNKNKENEKQVQTATSHGIAF 273
>YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein
Length = 308
Score = 159 bits (403), Expect = 4e-38
Identities = 96/309 (31%), Positives = 166/309 (53%), Gaps = 17/309 (5%)
Query: 1223 MDVKSAFLNGYISEEVYVHQPLGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLE 1282
MDV +AFLN + E +YV QP GF +E+ PD+V++L +YGLKQAP W E +++ L +
Sbjct: 1 MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60
Query: 1283 NEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGEL 1342
F R + + L+ ++ D + + +YVDD++ + + + + + + M +G++
Sbjct: 61 IGFCRHEGEHGLYFRSTSDGPIYIGVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120
Query: 1343 KYFLGIQVDQTPEG-------TYIHQSKYTKELLKKFNMLESTVAKT-PMHPTCILEKED 1394
FLG+ + Q+ G YI ++ E + F + ++ + + P+ T +D
Sbjct: 121 DKFLGLNIHQSTNGDITLSLQDYIAKAASESE-INTFKLTQTPLCNSKPLFETTSPHLKD 179
Query: 1395 KSGKVCQKLYRGMIGSLLY-LTASRPDILFSVHLCARFQSDPRETHLTAIKRILRYLKGT 1453
+ Y+ ++G LL+ RPDI + V L +RF +PR HL + +R+LRYL T
Sbjct: 180 ITP------YQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTT 233
Query: 1454 TNLGLMYKKTSEYKLSGYCDAHYAGDRTERKSTSGNCQFLGSNLVSWASKR-QSTIALST 1512
++ L Y+ S+ L+ YCDA + ST G L V+W+SK+ + I + +
Sbjct: 234 RSMCLKYRSGSQVALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPS 293
Query: 1513 AEAEYISAA 1521
EAEYI+A+
Sbjct: 294 TEAEYITAS 302
>M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810
(ORF240b)
Length = 240
Score = 150 bits (378), Expect = 3e-35
Identities = 74/215 (34%), Positives = 125/215 (57%), Gaps = 1/215 (0%)
Query: 1308 IYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKE 1367
+YVDDI+ ++ +L + + F M +G + YFLGIQ+ P G ++ Q+KY ++
Sbjct: 5 LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64
Query: 1368 LLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRGMIGSLLYLTASRPDILFSVHL 1427
+L ML+ TP+ P + + +R ++G+L YLT +RPDI ++V++
Sbjct: 65 ILNNAGMLDCKPMSTPL-PLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNI 123
Query: 1428 CARFQSDPRETHLTAIKRILRYLKGTTNLGLMYKKTSEYKLSGYCDAHYAGDRTERKSTS 1487
+ +P +KR+LRY+KGT GL K S+ + +CD+ +AG + R+ST+
Sbjct: 124 VCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTT 183
Query: 1488 GNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAI 1522
G C FLG N++SW++KRQ T++ S+ E EY + A+
Sbjct: 184 GFCTFLGCNIISWSAKRQPTVSRSSTETEYRALAL 218
>YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B)
Length = 1770
Score = 111 bits (278), Expect = 1e-23
Identities = 112/388 (28%), Positives = 179/388 (45%), Gaps = 41/388 (10%)
Query: 670 LTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKI--------RLSE 721
+ ++LLS+S+LA++ F + + + + DG+VL + + Y + +S+
Sbjct: 518 IAYDLLSLSELANQNITACFTRNT---LERSDGTVLAPIVKHGDFYWLSKKYLIPSHISK 574
Query: 722 LEAQNVKCLLSVNEEQW-VWHRRLGHASMRKISQLSKLNLVRGLPNLKF----ASDALCE 776
L NV SVN+ + + HR LGHA+ R I + K N V L AS C
Sbjct: 575 LTINNVNKSKSVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCP 634
Query: 777 ACQKGKFTK---VPFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWT 833
C GK TK V + P + LH D+FGPV Y + D+ +R+
Sbjct: 635 DCLIGKSTKHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQ 694
Query: 834 WVKFL-TRKDESHV-VFSTFIAQVQNEKACRIVRVRSDHGGEFES-----LFDSYGIAHD 886
WV L R++ES + VF++ +A ++N+ R++ ++ D G E+ + F + GI
Sbjct: 695 WVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITAC 754
Query: 887 FSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFLAEAVNTACYIQNRISVRPILNK 946
++ + +GV ER NRTL RT+L +G+ H AV + I+N + V P +K
Sbjct: 755 YTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSL-VSPKNDK 813
Query: 947 TPYELWKNIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGY----SERSKGFRF 1002
+ + +I+ PFG V N H D+K + GY S S G+
Sbjct: 814 SARQHAGLAGLDITTILPFGQPVIVNN-----HNPDSKIHPRGIPGYALHPSRNSYGYII 868
Query: 1003 YNTD-AKTIEESIHVRFDDKLDSDQSKL 1029
Y KT++ + +V DK QSKL
Sbjct: 869 YLPSLKKTVDTTNYVILQDK----QSKL 892
Score = 99.8 bits (247), Expect = 5e-20
Identities = 113/469 (24%), Positives = 222/469 (47%), Gaps = 62/469 (13%)
Query: 1089 EPVRTRSAFRPYEETLLSLKGLVSLIEPKSI---DEAL------QDKD-WILAMEEELNQ 1138
EP R++ + ++KG+ S+ ++ DEA+ ++KD ++ A +E++Q
Sbjct: 1220 EPPRSKKRIN----LIAAIKGVKSIKPVRTTLRYDEAITYNKDNKEKDRYVEAYHKEISQ 1275
Query: 1139 FSKNDVWSLVK-----KPESVHVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDY 1193
K + W K + VI + ++F N+K D +KAR VA+G Q
Sbjct: 1276 LLKMNTWDTNKYYDRNDIDPKKVINSMFIF----NKKRDGT-HKARFVARGDIQHPDTYD 1330
Query: 1194 TETFAPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQP--LGFEDEKK 1251
++ + A+ +S +++++ + Q+D+ SA+L I EE+Y+ P LG D+
Sbjct: 1331 SDMQSNTVHHYALMTSLSIALDNDYYITQLDISSAYLYADIKEELYIRPPPHLGLNDK-- 1388
Query: 1252 PDHVFKLKKSLYGLKQAPRAWYERLSSFLL---ENEFVRGKVDTTLFCKTYKDDILIVQI 1308
+ +L+KSLYGLKQ+ WYE + S+L+ + + VRG + +K+ + + +
Sbjct: 1389 ---LLRLRKSLYGLKQSGANWYETIKSYLINCCDMQEVRG------WSCVFKNSQVTICL 1439
Query: 1309 YVDDIIFGSANQSLCKEFSEMMQAEFEMSMM------GELKY-FLGIQVD-QTPEGTYIH 1360
+VDD+I S + + K+ ++ +++ ++ E++Y LG+++ Q + +
Sbjct: 1440 FVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRSKYMKLG 1499
Query: 1361 QSKYTKELLKKFNMLESTVAK---TPMHPTCILEKED---KSGKVCQKLY--RGMIGSLL 1412
K E L K N+ + K P P +++++ + +K++ + +IG
Sbjct: 1500 MEKSLTEKLPKLNVPLNPKGKKLRAPGQPGHYIDQDELEIDEDEYKEKVHEMQKLIGLAS 1559
Query: 1413 YLTAS-RPDILFSVHLCARFQSDPRETHLTAIKRILRYLKGTTNLGLMYKKTS----EYK 1467
Y+ R D+L+ ++ A+ P L +++++ T + L++ K + K
Sbjct: 1560 YVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTKPDNK 1619
Query: 1468 LSGYCDAHYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAE 1516
L DA Y G++ KS GN L ++ S + S ST EAE
Sbjct: 1620 LVAISDASY-GNQPYYKSQIGNIFLLNGKVIGGKSTKASLTCTSTTEAE 1667
>YJZ9_YEAST (P47100) Transposon Ty1 protein B
Length = 1755
Score = 105 bits (261), Expect = 1e-21
Identities = 109/425 (25%), Positives = 196/425 (45%), Gaps = 50/425 (11%)
Query: 1124 QDKDWILAMEEELNQFSKNDVWSLV-----KKPESVHVIGTKWVFRNKLNEKGDVVRNKA 1178
+ + +I A +E+NQ K W K+ + VI + ++F N+K D +KA
Sbjct: 1246 EKEKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFIF----NKKRDGT-HKA 1300
Query: 1179 RLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEV 1238
R VA+G Q + + A+ +S ++++N + Q+D+ SA+L I EE+
Sbjct: 1301 RFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEEL 1360
Query: 1239 YVHQP--LGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLEN---EFVRGKVDTT 1293
Y+ P LG D+ + +LKKSLYGLKQ+ WYE + S+L++ E VRG
Sbjct: 1361 YIRPPPHLGMNDK-----LIRLKKSLYGLKQSGANWYETIKSYLIQQCGMEEVRG----- 1410
Query: 1294 LFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMG------ELKY-FL 1346
+ +K+ + + ++VDD++ S N + K E ++ +++ ++ E++Y L
Sbjct: 1411 -WSCVFKNSQVTICLFVDDMVLFSKNLNSNKRIIEKLKMQYDTKIINLGESDEEIQYDIL 1469
Query: 1347 GIQVDQTPEGTY--IHQSKYTKELLKKFNM---LESTVAKTPMHPTCI-----LEKEDKS 1396
G+++ + G Y + E + K N+ + P P LE E+
Sbjct: 1470 GLEI-KYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQELELEEDD 1528
Query: 1397 GKVCQKLYRGMIGSLLYLTAS-RPDILFSVHLCARFQSDPRETHLTAIKRILRYLKGTTN 1455
K+ + +IG Y+ R D+L+ ++ A+ P + L +++++ T +
Sbjct: 1529 YKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRD 1588
Query: 1456 LGLMYKKTSEY----KLSGYCDAHYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALS 1511
L++ K+ KL DA Y G++ KS GN L ++ S + S S
Sbjct: 1589 KQLIWHKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTS 1647
Query: 1512 TAEAE 1516
T EAE
Sbjct: 1648 TTEAE 1652
Score = 90.1 bits (222), Expect = 4e-17
Identities = 121/538 (22%), Positives = 208/538 (38%), Gaps = 75/538 (13%)
Query: 611 LDSGCSRHMTGESRMFQELKLKPGGEVGFGGNEKGKIVGTGTICV---DSSPCIDNVLLV 667
LDSG SR + + P V I G + D++ VL
Sbjct: 460 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 519
Query: 668 DGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKI--------RL 719
+ ++LLS+++LA F + + + DG+VL + + Y + +
Sbjct: 520 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLLPSNI 576
Query: 720 SELEAQNVKCLLSVNEEQWVW-HRRLGHASMRKISQLSKLNLVRGLP----NLKFASDAL 774
S NV S + + + HR L HA+ + I K N + + A D
Sbjct: 577 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQ 636
Query: 775 CEACQKGKFTK---VPFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSR 831
C C GK TK + ++ P + LH D+FGPV Y + D+ ++
Sbjct: 637 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 696
Query: 832 WTWVKFLTRKDESHV--VFSTFIAQVQNEKACRIVRVRSDHGGEFES-----LFDSYGIA 884
+ WV L + E + VF+T +A ++N+ ++ ++ D G E+ + + GI
Sbjct: 697 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 756
Query: 885 HDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFLAEAVNTACYIQNRIS----- 939
++ + +GV ER NRTL + RT LQ +G+ H A+ + ++N ++
Sbjct: 757 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 816
Query: 940 -------------VRPILNKTPYELWKNIKPNISYFHPFGCVCYVLNTK----------D 976
+ +L + + PN S HP G Y L+
Sbjct: 817 KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN-SKIHPRGIPGYALHPSRNSYGYIIYLP 875
Query: 977 RLHKFDAKSSKCLLLGYSERSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSKLVEKFADL 1036
L K ++ +L G R F N DA T +E ++ S +++ DL
Sbjct: 876 SLKKTVDTTNYVILQGKESRLDQF---NYDALTFDEDLNRLTASYQSFIASNEIQQSDDL 932
Query: 1037 SINVSDKGKAPEEAEPEED--------EPEEEAGPS----DSQTLKKSRITAAHPKEL 1082
+I ++ E PE+ P + PS DS+ + K+ I A P+E+
Sbjct: 933 NIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRA--PREV 988
>YMU0_YEAST (Q04670) Transposon Ty1 protein B
Length = 1328
Score = 102 bits (254), Expect = 8e-21
Identities = 108/430 (25%), Positives = 198/430 (45%), Gaps = 60/430 (13%)
Query: 1124 QDKDWILAMEEELNQFSKNDVWSLV-----KKPESVHVIGTKWVFRNKLNEKGDVVRNKA 1178
+ + +I A +E+NQ K W K+ + VI + ++F K + +KA
Sbjct: 819 EKEKYIQAYHKEVNQLLKMKTWDTDRYYDRKEIDPKRVINSMFIFNRKRDGT-----HKA 873
Query: 1179 RLVAQGYSQQEGIDYTETFAPVARLE-----AIRLLISFSVNHNIVLHQMDVKSAFLNGY 1233
R VA+G I + +T+ P + A+ +S ++++N + Q+D+ SA+L
Sbjct: 874 RFVARG-----DIQHPDTYDPGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYAD 928
Query: 1234 ISEEVYVHQP--LGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLEN---EFVRG 1288
I EE+Y+ P LG D+ + +LKKSLYGLKQ+ WYE + S+L++ E VRG
Sbjct: 929 IKEELYIRPPPHLGMNDK-----LIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRG 983
Query: 1289 KVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMM------GEL 1342
+ +K+ + + ++VDD+I S + + K+ ++ +++ ++ E+
Sbjct: 984 ------WSCVFKNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEI 1037
Query: 1343 KY-FLGIQVDQTPEGTY--IHQSKYTKELLKKFNM---LESTVAKTPMHPTCI-----LE 1391
+Y LG+++ + G Y + E + K N+ + P P LE
Sbjct: 1038 QYDILGLEI-KYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQELE 1096
Query: 1392 KEDKSGKVCQKLYRGMIGSLLYLTAS-RPDILFSVHLCARFQSDPRETHLTAIKRILRYL 1450
E+ K+ + +IG Y+ R D+L+ ++ A+ P + L +++++
Sbjct: 1097 LEEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFI 1156
Query: 1451 KGTTNLGLMYKKTSEY----KLSGYCDAHYAGDRTERKSTSGNCQFLGSNLVSWASKRQS 1506
T + L++ K+ KL DA Y G++ KS GN L ++ S + S
Sbjct: 1157 WNTRDKQLIWHKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKAS 1215
Query: 1507 TIALSTAEAE 1516
ST EAE
Sbjct: 1216 LTCTSTTEAE 1225
Score = 90.1 bits (222), Expect = 4e-17
Identities = 121/538 (22%), Positives = 208/538 (38%), Gaps = 75/538 (13%)
Query: 611 LDSGCSRHMTGESRMFQELKLKPGGEVGFGGNEKGKIVGTGTICV---DSSPCIDNVLLV 667
LDSG SR + + P V I G + D++ VL
Sbjct: 33 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 92
Query: 668 DGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKI--------RL 719
+ ++LLS+++LA F + + + DG+VL + + Y + +
Sbjct: 93 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLLPSNI 149
Query: 720 SELEAQNVKCLLSVNEEQWVW-HRRLGHASMRKISQLSKLNLVRGLP----NLKFASDAL 774
S NV S + + + HR L HA+ + I K N + + A D
Sbjct: 150 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQ 209
Query: 775 CEACQKGKFTK---VPFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSR 831
C C GK TK + ++ P + LH D+FGPV Y + D+ ++
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 269
Query: 832 WTWVKFLTRKDESHV--VFSTFIAQVQNEKACRIVRVRSDHGGEFES-----LFDSYGIA 884
+ WV L + E + VF+T +A ++N+ ++ ++ D G E+ + + GI
Sbjct: 270 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 329
Query: 885 HDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFLAEAVNTACYIQNRIS----- 939
++ + +GV ER NRTL + RT LQ +G+ H A+ + ++N ++
Sbjct: 330 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 389
Query: 940 -------------VRPILNKTPYELWKNIKPNISYFHPFGCVCYVLNTK----------D 976
+ +L + + PN S HP G Y L+
Sbjct: 390 KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN-SKIHPRGIPGYALHPSRNSYGYIIYLP 448
Query: 977 RLHKFDAKSSKCLLLGYSERSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSKLVEKFADL 1036
L K ++ +L G R F N DA T +E ++ S +++ DL
Sbjct: 449 SLKKTVDTTNYVILQGKESRLDQF---NYDALTFDEDLNRLTASYQSFIASNEIQQSDDL 505
Query: 1037 SINVSDKGKAPEEAEPEED--------EPEEEAGPS----DSQTLKKSRITAAHPKEL 1082
+I ++ E PE+ P + PS DS+ + K+ I A P+E+
Sbjct: 506 NIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRA--PREV 561
>YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein
Length = 1803
Score = 102 bits (254), Expect = 8e-21
Identities = 103/432 (23%), Positives = 200/432 (45%), Gaps = 55/432 (12%)
Query: 1134 EELNQFSKNDVWSLVKKPESVHVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDY 1193
+++ F + +S + P+++ ++ T +F K N KAR+V +G +Q Y
Sbjct: 1301 KDMKVFDVDVKYSRSEIPDNL-IVPTNTIFTKKRNGI-----YKARIVCRGDTQSPDT-Y 1353
Query: 1194 TETFAPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPLGFEDEKKPD 1253
+ I++ + + N N+ + +D+ AFL + EE+Y+ P D +
Sbjct: 1354 SVITTESLNHNHIKIFLMIANNRNMFMKTLDINHAFLYAKLEEEIYIPHP---HDRRC-- 1408
Query: 1254 HVFKLKKSLYGLKQAPRAWYERLSSFL-----LENEFVRGKVDTTLFCKTYKDDILIVQI 1308
V KL K+LYGLKQ+P+ W + L +L +N + G T +D L++ +
Sbjct: 1409 -VVKLNKALYGLKQSPKEWNDHLRQYLNGIGLKDNSYTPGLYQT-------EDKNLMIAV 1460
Query: 1309 YVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGEL------KYFLGIQ---------VDQT 1353
YVDD + ++N+ EF +++ FE+ + G L LG+ +D T
Sbjct: 1461 YVDDCVIAASNEQRLDEFINKLKSNFELKITGTLIDDVLDTDILGMDLVYNKRLGTIDLT 1520
Query: 1354 PEGTYIHQ--SKYTKEL--LKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRGMIG 1409
+ ++I++ KY +EL ++K ++ + K + E++ + KL + ++G
Sbjct: 1521 LK-SFINRMDKKYNEELKKIRKSSIPHMSTYKIDPKKDVLQMSEEEFRQGVLKLQQ-LLG 1578
Query: 1410 SLLYLT-ASRPDILFSVHLCARFQSDPRETHLTAIKRILRYLKGTTNLGLMYKK--TSEY 1466
L Y+ R DI F+V AR + P E I +I++YL ++G+ Y + +
Sbjct: 1579 ELNYVRHKCRYDIEFAVKKVARLVNYPHERVFYMIYKIIQYLVRYKDIGIHYDRDCNKDK 1638
Query: 1467 KLSGYCDAHYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSVR 1526
K+ DA G + +S G + G N+ + S + + +S+ EAE + ++
Sbjct: 1639 KVIAITDAS-VGSEYDAQSRIGVILWYGMNIFNVYSNKSTNRCVSSTEAE-----LHAIY 1692
Query: 1527 PGFSEQVNFRLT 1538
G+++ ++T
Sbjct: 1693 EGYADSETLKVT 1704
Score = 73.6 bits (179), Expect = 4e-12
Identities = 68/276 (24%), Positives = 119/276 (42%), Gaps = 16/276 (5%)
Query: 741 HRRLGHASMRKISQLSKLN-LVRGLPNLKFASDALCEACQKGKFTK---VPFKAKNVVST 796
H+R+GH +++I K N L +K ++ C+ C+ K TK N +
Sbjct: 562 HKRMGHTGIQQIENSIKHNHYEESLDLIKEPNEFWCQTCKISKATKRNHYTGSMNNHSTD 621
Query: 797 SRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLTRKDESHVVFSTF--IAQ 854
P +D+FGPV + + KRY +++VD+ +R+ K+ ++ I
Sbjct: 622 HEPGSSWCMDIFGPVSSSNADTKRYMLIMVDNNTRYCMTSTHFNKNAETILAQVRKNIQY 681
Query: 855 VQNEKACRIVRVRSDHGGEF-----ESLFDSYGIAHDFSCPRTPQQNGVVERKNRTLQEM 909
V+ + ++ + SD G EF E F S GI H + + NG ER RT+
Sbjct: 682 VETQFDRKVREINSDRGTEFTNDQIEEYFISKGIHHILTSTQDHAANGRAERYIRTIITD 741
Query: 910 ARTMLQETGMAKHFLAEAVNTACYIQNRISVRPILNKTPYELWKN--IKPNISYFHPFGC 967
A T+L+++ + F AV +A I+N + + K P + + + F PFG
Sbjct: 742 ATTLLRQSNLRVKFWEYAVTSATNIRNYLEHKS-TGKLPLKAISRQPVTVRLMSFLPFGE 800
Query: 968 VCYVLNTKDRLHKFDAKSSKCLLLGYSERSKGFRFY 1003
+ N + K ++L S G++F+
Sbjct: 801 KGIIWNHNHK--KLKPSGLPSIILCKDPNSYGYKFF 834
>YMT5_YEAST (Q04214) Transposon Ty1 protein B
Length = 1328
Score = 101 bits (252), Expect = 1e-20
Identities = 105/425 (24%), Positives = 194/425 (44%), Gaps = 50/425 (11%)
Query: 1124 QDKDWILAMEEELNQFSKNDVWSLVK-----KPESVHVIGTKWVFRNKLNEKGDVVRNKA 1178
+ + +I A +E+NQ K W K + + VI + ++F K + +KA
Sbjct: 819 EKEKYIEAYHKEVNQLLKMKTWDTDKYYDRKEIDPKRVINSMFIFNRKRDGT-----HKA 873
Query: 1179 RLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEV 1238
R VA+G Q + + A+ +S ++++N + Q+D+ SA+L I EE+
Sbjct: 874 RFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEEL 933
Query: 1239 YVHQP--LGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLEN---EFVRGKVDTT 1293
Y+ P LG D+ + +LKKSLYGLKQ+ WYE + S+L++ E VRG
Sbjct: 934 YIRPPPHLGMNDK-----LIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRG----- 983
Query: 1294 LFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMG------ELKY-FL 1346
+ +++ + + ++VDD++ S N + K + ++ +++ ++ E++Y L
Sbjct: 984 -WSCVFENSQVTICLFVDDMVLFSKNLNSNKRIIDKLKMQYDTKIINLGESDEEIQYDIL 1042
Query: 1347 GIQVDQTPEGTY--IHQSKYTKELLKKFNM---LESTVAKTPMHPTCI-----LEKEDKS 1396
G+++ + G Y + E + K N+ + P P LE E+
Sbjct: 1043 GLEI-KYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQELELEEDD 1101
Query: 1397 GKVCQKLYRGMIGSLLYLTAS-RPDILFSVHLCARFQSDPRETHLTAIKRILRYLKGTTN 1455
K+ + +IG Y+ R D+L+ ++ A+ P + L +++++ T +
Sbjct: 1102 YKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRD 1161
Query: 1456 LGLMYKKTSEY----KLSGYCDAHYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALS 1511
L++ K+ KL DA Y G++ KS GN L ++ S + S S
Sbjct: 1162 KQLIWHKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTS 1220
Query: 1512 TAEAE 1516
T EAE
Sbjct: 1221 TTEAE 1225
Score = 89.0 bits (219), Expect = 9e-17
Identities = 121/538 (22%), Positives = 208/538 (38%), Gaps = 75/538 (13%)
Query: 611 LDSGCSRHMTGESRMFQELKLKPGGEVGFGGNEKGKIVGTGTICV---DSSPCIDNVLLV 667
LDSG SR + + P V I G + D++ VL
Sbjct: 33 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 92
Query: 668 DGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKI--------RL 719
+ ++LLS+++LA F + + + DG+VL + + Y + +
Sbjct: 93 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLLPSNI 149
Query: 720 SELEAQNVKCLLSVNEEQWVW-HRRLGHASMRKISQLSKLNLVRGLP----NLKFASDAL 774
S NV S + + + HR L HA+ + I K N + + A D
Sbjct: 150 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQ 209
Query: 775 CEACQKGKFTK---VPFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSR 831
C C GK TK + ++ P + LH D+FGPV Y + D+ ++
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 269
Query: 832 WTWVKFLTRKDESHV--VFSTFIAQVQNEKACRIVRVRSDHGGEFES-----LFDSYGIA 884
+ WV L + E + VF+T +A ++N+ ++ ++ D G E+ + + GI
Sbjct: 270 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 329
Query: 885 HDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFLAEAVNTACYIQNRIS----- 939
++ + +GV ER NRTL + RT LQ +G+ H A+ + ++N ++
Sbjct: 330 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 389
Query: 940 -------------VRPILNKTPYELWKNIKPNISYFHPFGCVCYVLNTK----------D 976
+ +L + + PN S HP G Y L+
Sbjct: 390 KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN-SKIHPRGIPGYALHPSRNSYGYIIYLP 448
Query: 977 RLHKFDAKSSKCLLLGYSERSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSKLVEKFADL 1036
L K ++ +L G R F N DA T +E ++ S +++ DL
Sbjct: 449 SLKKTVDTTNYVILQGKESRLDQF---NYDALTFDEDLNRLTASYHSFIASNEIQQSNDL 505
Query: 1037 SINVSDKGKAPEEAEPEE--------DEPEEEAGPS----DSQTLKKSRITAAHPKEL 1082
+I ++ E PE+ P + PS DS+ + K+ I A P+E+
Sbjct: 506 NIESDHDFQSDIELHPEQLRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRA--PREV 561
>YME4_YEAST (Q04711) Transposon Ty1 protein B
Length = 1328
Score = 101 bits (252), Expect = 1e-20
Identities = 103/425 (24%), Positives = 198/425 (46%), Gaps = 50/425 (11%)
Query: 1124 QDKDWILAMEEELNQFSKNDVWSLVK-----KPESVHVIGTKWVFRNKLNEKGDVVRNKA 1178
+ + +I A +E+NQ K + W K + + VI + ++F K + +KA
Sbjct: 819 EKEKYIEAYHKEVNQLLKMNTWDTDKYYDRKEIDPKRVINSMFIFNRKRDGT-----HKA 873
Query: 1179 RLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEV 1238
R VA+G Q + + A+ +S ++++N + Q+D+ SA+L I EE+
Sbjct: 874 RFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEEL 933
Query: 1239 YVHQP--LGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLEN---EFVRGKVDTT 1293
Y+ P LG D+ + +LKKSLYGLKQ+ WYE + S+L++ E VRG
Sbjct: 934 YIRPPPHLGMNDK-----LIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRG----- 983
Query: 1294 LFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMM------GELKY-FL 1346
+ +K+ + + ++VDD+I S + + K+ ++ +++ ++ E++Y L
Sbjct: 984 -WSCVFKNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDIL 1042
Query: 1347 GIQVDQTPEGTY--IHQSKYTKELLKKFNM---LESTVAKTPMHPTCILEKED---KSGK 1398
G+++ + G Y + E + K N+ + P P +++++ +
Sbjct: 1043 GLEI-KYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDE 1101
Query: 1399 VCQKLY--RGMIGSLLYLTAS-RPDILFSVHLCARFQSDPRETHLTAIKRILRYLKGTTN 1455
+K++ + +IG Y+ R D+L+ ++ A+ P L +++++ T +
Sbjct: 1102 YKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRD 1161
Query: 1456 LGLMYKKTS----EYKLSGYCDAHYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALS 1511
L++ K + KL DA Y G++ KS GN L ++ S + S S
Sbjct: 1162 KQLIWHKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTS 1220
Query: 1512 TAEAE 1516
T EAE
Sbjct: 1221 TTEAE 1225
Score = 90.1 bits (222), Expect = 4e-17
Identities = 121/538 (22%), Positives = 208/538 (38%), Gaps = 75/538 (13%)
Query: 611 LDSGCSRHMTGESRMFQELKLKPGGEVGFGGNEKGKIVGTGTICV---DSSPCIDNVLLV 667
LDSG SR + + P V I G + D++ VL
Sbjct: 33 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 92
Query: 668 DGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKI--------RL 719
+ ++LLS+++LA F + + + DG+VL + + Y + +
Sbjct: 93 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLLPSNI 149
Query: 720 SELEAQNVKCLLSVNEEQWVW-HRRLGHASMRKISQLSKLNLVRGLP----NLKFASDAL 774
S NV S + + + HR L HA+ + I K N + + A D
Sbjct: 150 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQ 209
Query: 775 CEACQKGKFTK---VPFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSR 831
C C GK TK + ++ P + LH D+FGPV Y + D+ ++
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 269
Query: 832 WTWVKFLTRKDESHV--VFSTFIAQVQNEKACRIVRVRSDHGGEFES-----LFDSYGIA 884
+ WV L + E + VF+T +A ++N+ ++ ++ D G E+ + + GI
Sbjct: 270 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 329
Query: 885 HDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFLAEAVNTACYIQNRIS----- 939
++ + +GV ER NRTL + RT LQ +G+ H A+ + ++N ++
Sbjct: 330 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 389
Query: 940 -------------VRPILNKTPYELWKNIKPNISYFHPFGCVCYVLNTK----------D 976
+ +L + + PN S HP G Y L+
Sbjct: 390 KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN-SKIHPRGIPGYALHPSRNSYGYIIYLP 448
Query: 977 RLHKFDAKSSKCLLLGYSERSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSKLVEKFADL 1036
L K ++ +L G R F N DA T +E ++ S +++ DL
Sbjct: 449 SLKKTVDTTNYVILQGKESRLDQF---NYDALTFDEDLNRLTASYQSFIASNEIQQSDDL 505
Query: 1037 SINVSDKGKAPEEAEPEED--------EPEEEAGPS----DSQTLKKSRITAAHPKEL 1082
+I ++ E PE+ P + PS DS+ + K+ I A P+E+
Sbjct: 506 NIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRA--PREV 561
>YMD9_YEAST (Q03434) Transposon Ty1 protein B
Length = 1328
Score = 101 bits (251), Expect = 2e-20
Identities = 105/425 (24%), Positives = 199/425 (46%), Gaps = 50/425 (11%)
Query: 1124 QDKDWILAMEEELNQFSKNDVWSLV-----KKPESVHVIGTKWVFRNKLNEKGDVVRNKA 1178
+ + +I A +E+NQ K W K+ + VI + ++F N+K D +KA
Sbjct: 819 EKEKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFIF----NKKRDGT-HKA 873
Query: 1179 RLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEV 1238
R VA+G Q + + A+ +S ++++N + Q+D+ SA+L I EE+
Sbjct: 874 RFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEEL 933
Query: 1239 YVHQP--LGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLEN---EFVRGKVDTT 1293
Y+ P LG D+ + +LKKSLYGLKQ+ WYE + S+L++ E VRG
Sbjct: 934 YIRPPPHLGMNDK-----LIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRG----- 983
Query: 1294 LFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMM------GELKY-FL 1346
+ +K+ + + ++VDD+I S + + K+ ++ +++ ++ E++Y L
Sbjct: 984 -WSCVFKNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDIL 1042
Query: 1347 GIQVDQTPEGTY--IHQSKYTKELLKKFNM---LESTVAKTPMHPTCILEKED---KSGK 1398
G+++ + G Y + E + K N+ + P P +++++ +
Sbjct: 1043 GLEI-KYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDE 1101
Query: 1399 VCQKLY--RGMIGSLLYLTAS-RPDILFSVHLCARFQSDPRETHLTAIKRILRYLKGTTN 1455
+K++ + +IG Y+ R D+L+ ++ A+ P L +++++ T +
Sbjct: 1102 YKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRD 1161
Query: 1456 LGLMYKKTS----EYKLSGYCDAHYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALS 1511
L++ K + KL DA Y G++ KS GN L ++ S + S S
Sbjct: 1162 KQLIWHKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTS 1220
Query: 1512 TAEAE 1516
T EAE
Sbjct: 1221 TTEAE 1225
Score = 90.1 bits (222), Expect = 4e-17
Identities = 121/538 (22%), Positives = 208/538 (38%), Gaps = 75/538 (13%)
Query: 611 LDSGCSRHMTGESRMFQELKLKPGGEVGFGGNEKGKIVGTGTICV---DSSPCIDNVLLV 667
LDSG SR + + P V I G + D++ VL
Sbjct: 33 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 92
Query: 668 DGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKI--------RL 719
+ ++LLS+++LA F + + + DG+VL + + Y + +
Sbjct: 93 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLLPSNI 149
Query: 720 SELEAQNVKCLLSVNEEQWVW-HRRLGHASMRKISQLSKLNLVRGLP----NLKFASDAL 774
S NV S + + + HR L HA+ + I K N + + A D
Sbjct: 150 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDRSSAIDYQ 209
Query: 775 CEACQKGKFTK---VPFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSR 831
C C GK TK + ++ P + LH D+FGPV Y + D+ ++
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 269
Query: 832 WTWVKFLTRKDESHV--VFSTFIAQVQNEKACRIVRVRSDHGGEFES-----LFDSYGIA 884
+ WV L + E + VF+T +A ++N+ ++ ++ D G E+ + + GI
Sbjct: 270 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 329
Query: 885 HDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFLAEAVNTACYIQNRIS----- 939
++ + +GV ER NRTL + RT LQ +G+ H A+ + ++N ++
Sbjct: 330 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 389
Query: 940 -------------VRPILNKTPYELWKNIKPNISYFHPFGCVCYVLNTK----------D 976
+ +L + + PN S HP G Y L+
Sbjct: 390 KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN-SKIHPRGIPGYALHPSRNSYGYIIYLP 448
Query: 977 RLHKFDAKSSKCLLLGYSERSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSKLVEKFADL 1036
L K ++ +L G R F N DA T +E ++ S +++ DL
Sbjct: 449 SLKKTVDTTNYVILQGKESRLDQF---NYDALTFDEDLNRLTASYQSFIASNEIQQSDDL 505
Query: 1037 SINVSDKGKAPEEAEPEED--------EPEEEAGPS----DSQTLKKSRITAAHPKEL 1082
+I ++ E PE+ P + PS DS+ + K+ I A P+E+
Sbjct: 506 NIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRA--PREV 561
>YJZ7_YEAST (P47098) Transposon Ty1 protein B
Length = 1755
Score = 99.4 bits (246), Expect = 7e-20
Identities = 105/425 (24%), Positives = 198/425 (45%), Gaps = 50/425 (11%)
Query: 1124 QDKDWILAMEEELNQFSKNDVWSLV-----KKPESVHVIGTKWVFRNKLNEKGDVVRNKA 1178
+ + +I A +E+NQ K W K+ + VI + ++F N+K D +KA
Sbjct: 1246 EKEKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFIF----NKKRDGT-HKA 1300
Query: 1179 RLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEV 1238
R VA+G Q T + A+ +S ++++N + Q+D+ SA+L I EE+
Sbjct: 1301 RFVARGDIQHPDTYDTGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEEL 1360
Query: 1239 YVHQP--LGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLEN---EFVRGKVDTT 1293
Y+ P LG D+ + +LKKS YGLKQ+ WYE + S+L++ E VRG
Sbjct: 1361 YIRPPPHLGMNDK-----LIRLKKSHYGLKQSGANWYETIKSYLIKQCGMEEVRG----- 1410
Query: 1294 LFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMM------GELKY-FL 1346
+ +K+ + + ++VDD+I S + + K+ ++ +++ ++ E++Y L
Sbjct: 1411 -WSCVFKNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDIL 1469
Query: 1347 GIQVDQTPEGTY--IHQSKYTKELLKKFNM---LESTVAKTPMHPTCILEKED---KSGK 1398
G+++ + G Y + E + K N+ + P P +++++ +
Sbjct: 1470 GLEI-KYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDE 1528
Query: 1399 VCQKLY--RGMIGSLLYLTAS-RPDILFSVHLCARFQSDPRETHLTAIKRILRYLKGTTN 1455
+K++ + +IG Y+ R D+L+ ++ A+ P L +++++ T +
Sbjct: 1529 YKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRD 1588
Query: 1456 LGLMYKKTS----EYKLSGYCDAHYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALS 1511
L++ K + KL DA Y G++ KS GN L ++ S + S S
Sbjct: 1589 KQLIWHKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNIFLLNGKVIGGKSTKASLTCTS 1647
Query: 1512 TAEAE 1516
T EAE
Sbjct: 1648 TTEAE 1652
Score = 89.7 bits (221), Expect = 6e-17
Identities = 121/538 (22%), Positives = 208/538 (38%), Gaps = 75/538 (13%)
Query: 611 LDSGCSRHMTGESRMFQELKLKPGGEVGFGGNEKGKIVGTGTICV---DSSPCIDNVLLV 667
LDSG SR + + P V I G + D++ VL
Sbjct: 460 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 519
Query: 668 DGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKI--------RL 719
+ ++LLS+++LA F + + + DG+VL + + Y + +
Sbjct: 520 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVQYGDFYWVSKRYLLPSNI 576
Query: 720 SELEAQNVKCLLSVNEEQWVW-HRRLGHASMRKISQLSKLNLVRGLP----NLKFASDAL 774
S NV S + + + HR L HA+ + I K N + + A D
Sbjct: 577 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQ 636
Query: 775 CEACQKGKFTK---VPFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSR 831
C C GK TK + ++ P + LH D+FGPV Y + D+ ++
Sbjct: 637 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 696
Query: 832 WTWVKFLTRKDESHV--VFSTFIAQVQNEKACRIVRVRSDHGGEFES-----LFDSYGIA 884
+ WV L + E + VF+T +A ++N+ ++ ++ D G E+ + + GI
Sbjct: 697 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 756
Query: 885 HDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFLAEAVNTACYIQNRIS----- 939
++ + +GV ER NRTL + RT LQ +G+ H A+ + ++N ++
Sbjct: 757 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 816
Query: 940 -------------VRPILNKTPYELWKNIKPNISYFHPFGCVCYVLNTK----------D 976
+ +L + + PN S HP G Y L+
Sbjct: 817 KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN-SKIHPRGIPGYALHPSRNSYGYIIYLP 875
Query: 977 RLHKFDAKSSKCLLLGYSERSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSKLVEKFADL 1036
L K ++ +L G R F N DA T +E ++ S +++ DL
Sbjct: 876 SLKKTVDTTNYVILQGKESRLDQF---NYDALTFDEDLNRLTASYQSFIASNEIQESNDL 932
Query: 1037 SINVSDKGKAPEEAEPEED--------EPEEEAGPS----DSQTLKKSRITAAHPKEL 1082
+I ++ E PE+ P + PS DS+ + K+ I A P+E+
Sbjct: 933 NIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRA--PREV 988
>M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820
(ORF170)
Length = 170
Score = 99.0 bits (245), Expect = 9e-20
Identities = 46/97 (47%), Positives = 67/97 (68%)
Query: 1115 EPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPESVHVIGTKWVFRNKLNEKGDVV 1174
EPKS+ AL+D W AM+EEL+ S+N W LV P + +++G KWVF+ KL+ G +
Sbjct: 27 EPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLD 86
Query: 1175 RNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLIS 1211
R KARLVA+G+ Q+EGI + ET++PV R IR +++
Sbjct: 87 RLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILN 123
>M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240
(ORF111a)
Length = 111
Score = 66.2 bits (160), Expect = 7e-10
Identities = 29/82 (35%), Positives = 49/82 (59%)
Query: 1412 LYLTASRPDILFSVHLCARFQSDPRETHLTAIKRILRYLKGTTNLGLMYKKTSEYKLSGY 1471
+YLT +RPD+ F+V+ ++F S R + A+ ++L Y+KGT GL Y TS+ +L +
Sbjct: 1 MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60
Query: 1472 CDAHYAGDRTERKSTSGNCQFL 1493
D+ +A R+S +G C +
Sbjct: 61 ADSDWASCPDTRRSVTGFCSLV 82
>POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1189
Score = 61.2 bits (147), Expect = 2e-08
Identities = 73/278 (26%), Positives = 120/278 (42%), Gaps = 28/278 (10%)
Query: 690 NQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELEAQNVKCLLSVNEEQWVWHRRLGHASM 749
+Q+ RA+ + N +++ KI L + EA L++ ++ W LG+ +
Sbjct: 806 DQEEARAIGATENKDTRNWEKEG---KIVLPQKEA------LAMIQQMHAW-THLGNRKL 855
Query: 750 RKISQLSKLNLVRGLPNLKFASDALCEACQKGKFTKVPFKAKNVVSTSRPLELLHIDLFG 809
+ + + + + R ++ + A C+ CQ+ A +RP ID F
Sbjct: 856 KLLIEKTDFLIPRASTLIEQVTSA-CKVCQQVNAGATRVPAGKRTRGNRPGVYWEID-FT 913
Query: 810 PVKTESIGGKRYGMVIVDDYSRWTWVKFLTRKDESHVVFSTFIAQVQNEKACRIVRVRSD 869
VK G K Y +V VD +S W F TR++ +H+V + ++ V + SD
Sbjct: 914 EVKPHYAGYK-YLLVFVDTFSGWVEA-FPTRQETAHIVAKKILEEIFPRFGLPKV-IGSD 970
Query: 870 HGGEFES-----LFDSYGIAHDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMA--KH 922
+G F S L GI C PQ +G VER NRT++E + ETG+ +
Sbjct: 971 NGPAFVSQVSQGLARILGINWKLHCAYRPQSSGQVERMNRTIKETLTKLTLETGLKDWRR 1030
Query: 923 FLAEAVNTACYIQNRISVRPILNKTPYELWKNIKPNIS 960
L+ A+ A NR + TPYE+ P +S
Sbjct: 1031 LLSLALLRARNTPNRFGL------TPYEILYGGPPPLS 1062
>M710_ARATH (P92512) Hypothetical mitochondrial protein AtMg00710
(ORF120)
Length = 120
Score = 58.2 bits (139), Expect = 2e-07
Identities = 30/69 (43%), Positives = 38/69 (54%)
Query: 903 NRTLQEMARTMLQETGMAKHFLAEAVNTACYIQNRISVRPILNKTPYELWKNIKPNISYF 962
NRT+ E R+ML E G+ K F A+A NTA +I N+ I P E+W P SY
Sbjct: 2 NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61
Query: 963 HPFGCVCYV 971
FGCV Y+
Sbjct: 62 RRFGCVAYI 70
>POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 1046
Score = 55.5 bits (132), Expect = 1e-06
Identities = 59/195 (30%), Positives = 88/195 (44%), Gaps = 21/195 (10%)
Query: 775 CEACQK--GKFTKVPFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRW 832
C+ CQ+ T+VP + +RP ID F VK G K Y +V VD +S W
Sbjct: 737 CKVCQQVNAGATRVPEGKRT--RGNRPGVYWEID-FTEVKPHYAGYK-YLLVFVDTFSGW 792
Query: 833 TWVKFLTRKDESHVVFSTFIAQVQNEKACRIVRVRSDHGGEFES-----LFDSYGIAHDF 887
+ TR++ +H+V + ++ V + SD+G F S L + GI
Sbjct: 793 VEA-YPTRQETAHMVAKKILEEIFPRFGLPKV-IGSDNGPAFVSQVSQGLARTLGINWKL 850
Query: 888 SCPRTPQQNGVVERKNRTLQEMARTMLQETGMA--KHFLAEAVNTACYIQNRISVRPILN 945
C PQ +G VER NRT++E + ETG+ + L+ A+ A NR +
Sbjct: 851 HCAYRPQSSGQVERMNRTIKETLTKLTLETGLKDWRRLLSLALLRARNTPNRFGL----- 905
Query: 946 KTPYELWKNIKPNIS 960
TPYE+ P +S
Sbjct: 906 -TPYEILYGGPPPLS 919
>POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1196
Score = 52.4 bits (124), Expect = 1e-05
Identities = 64/231 (27%), Positives = 98/231 (41%), Gaps = 19/231 (8%)
Query: 743 RLGHASMRKISQL-----SKLNLVRGLPNLKFASDALCEACQKGKFTKVPFKAKNVVSTS 797
RL H +K+ L S ++ L++ +D+ C C + +K A V
Sbjct: 849 RLTHLGYQKMKALLDRGESPYYMLNRDKTLQYVADS-CTVCAQVNASKAKIGAGVRVRGH 907
Query: 798 RPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLTRKDESHVVFSTFIAQVQN 857
RP ID F VK + G +Y +V VD +S W F T+++ + VV + ++
Sbjct: 908 RPGSHWEID-FTEVKP-GLYGYKYLLVFVDTFSGWVEA-FPTKRETARVVSKKLLEEIFP 964
Query: 858 EKACRIVRVRSDHGGEF-----ESLFDSYGIAHDFSCPRTPQQNGVVERKNRTLQEMART 912
V + SD+G F +S+ D GI C PQ +G VER NRT++E
Sbjct: 965 RFGMPQV-LGSDNGPAFTSQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTK 1023
Query: 913 MLQETGMAKHFLAEAVNTACYIQNRISVRPILNKTPYELWKNIKPNISYFH 963
+ G L + A Y + R + P TPYE+ P + FH
Sbjct: 1024 LTLAAGTRDWVL--LLPLALY-RARNTPGP-HGLTPYEILYGAPPPLVNFH 1070
>ATRX_CAEEL (Q9U7E0) Transcriptional regulator ATRX homolog
(X-linked nuclear protein-1)
Length = 1359
Score = 52.0 bits (123), Expect = 1e-05
Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 28/169 (16%)
Query: 207 KRSEMQDLRKKSIALKSKSEKAKAEKSKALQAEEEESEEASEDSDEDELTLISKRLNRIW 266
++ E + K++ LK K E+ K A++ ++ + ED D++E +
Sbjct: 25 RQIENERKEKRAQKLKEKREREGKPPPKKRPAKKRKASSSEEDDDDEEES---------- 74
Query: 267 KHRQSKYKGSGKAKGKSESSGQKKSSLKEVTCFECKESGHYKSDCPKLKKDKKPKKHFKT 326
R+S K +AK +SES E E K K K D+K K+ K
Sbjct: 75 -PRKSSKKSRKRAKSESESD-------------ESDEEEDRKKSKSKKKVDQKKKEKSKK 120
Query: 327 KKSLMVTFDESESEDVDSDGESKDSWLLSKTKKQSQRELLTLTQNQKEI 375
K+ T SE ED D + E K KTKKQ+ E ++ ++++
Sbjct: 121 KR----TTSSSEDEDSDEEREQKSKKKSKKTKKQTSSESSEESEEERKV 165
Score = 48.5 bits (114), Expect = 1e-04
Identities = 56/222 (25%), Positives = 94/222 (42%), Gaps = 34/222 (15%)
Query: 183 IELTRDVENMSLEELISILKCHELKRSEMQDLRKKSIALKSKS-----------EKAKAE 231
+E+ R +EN E+ LK E + E + KK A K K+ E +
Sbjct: 21 LEMARQIENERKEKRAQKLK--EKREREGKPPPKKRPAKKRKASSSEEDDDDEEESPRKS 78
Query: 232 KSKALQAEEEESEEASEDSDEDELTLISKRLNRIWKHRQSKYK---GSGKAKGKSESSGQ 288
K+ + + ESE D +ED SK+ K +SK K S + + E Q
Sbjct: 79 SKKSRKRAKSESESDESDEEEDRKKSKSKKKVDQKKKEKSKKKRTTSSSEDEDSDEEREQ 138
Query: 289 K-KSSLKEVTCFECKESGHYKSDCPKLKKDKKPKKHFKTKKSLMVTFDESESED------ 341
K K K+ ES + K+KK KK K+ K+ K T +ES+ ++
Sbjct: 139 KSKKKSKKTKKQTSSESSEESEEERKVKKSKKNKE--KSVKKRAETSEESDEDEKPSKKS 196
Query: 342 ---------VDSDGESKDSWLLSKTKKQSQRELLTLTQNQKE 374
+S+ ES+D + K+KK+S++ + ++++ E
Sbjct: 197 KKGLKKKAKSESESESEDEKEVKKSKKKSKKVVKKESESEDE 238
Score = 48.1 bits (113), Expect = 2e-04
Identities = 42/188 (22%), Positives = 89/188 (47%), Gaps = 14/188 (7%)
Query: 187 RDVENMSLEELISILKCHELKRSEMQDLRKKSIALKSKSEKAKAEKSKALQAEEEESEEA 246
+ + S EE K + K+++ + ++K++ + E K K +++ E+
Sbjct: 149 KQTSSESSEESEEERKVKKSKKNKEKSVKKRAETSEESDEDEKPSKKSKKGLKKKAKSES 208
Query: 247 SEDSDEDELTLISKRLNRIWKHRQSKYKGSGKAKGKSESSGQKKSSLKEVTCFECKESGH 306
+S++++ SK+ ++ ++S+ + K K+E + K+S +E S
Sbjct: 209 ESESEDEKEVKKSKKKSKKVVKKESESEDEAPEKKKTEKRKRSKTSSEE-------SSES 261
Query: 307 YKSDCPKLKKDKKPKKHFKTKKSLMVTFDESESEDVDSDGESKDSWLLSKTKKQSQRELL 366
KSD + +K+ PK K KK L V S+ E +SD E +L + KK+ L+
Sbjct: 262 EKSDEEEEEKESSPKP--KKKKPLAVKKLSSDEESEESDVE-----VLPQKKKRGAVTLI 314
Query: 367 TLTQNQKE 374
+ ++++K+
Sbjct: 315 SDSEDEKD 322
Score = 47.4 bits (111), Expect = 3e-04
Identities = 49/174 (28%), Positives = 75/174 (42%), Gaps = 18/174 (10%)
Query: 205 ELKRSEMQDLRKKSIALKSKSEKAKAEKSKALQAEEEES----EEASEDSDEDELTLISK 260
E K + KK + +S E + K K + +E+S E SE+SDEDE SK
Sbjct: 137 EQKSKKKSKKTKKQTSSESSEESEEERKVKKSKKNKEKSVKKRAETSEESDEDEKP--SK 194
Query: 261 RLNRIWKHRQSKYKGSGKAKGKSESSGQKKSSLKEVTCFECKESGHYKSDCPKLKKDKKP 320
+ + K + S K +KKS K+V K+ + + P+ KK +K
Sbjct: 195 KSKKGLKKKAKSESESESEDEKEVKKSKKKS--KKVV----KKESESEDEAPEKKKTEK- 247
Query: 321 KKHFKTKKSLMVTFDESESEDVDSDGESKDSWLLSKTKKQSQRELLTLTQNQKE 374
+K KT + SESE D + E K+S K KK + L+ + +E
Sbjct: 248 RKRSKTSSE-----ESSESEKSDEEEEEKESSPKPKKKKPLAVKKLSSDEESEE 296
Score = 42.7 bits (99), Expect = 0.008
Identities = 51/202 (25%), Positives = 88/202 (43%), Gaps = 34/202 (16%)
Query: 205 ELKRSEMQDLRKKSIALKSKSEKA-----------KAEKSKALQAEEEESEEASEDSDED 253
E K++E + K S S+SEK+ K +K K L ++ S+E SE+SD +
Sbjct: 241 EKKKTEKRKRSKTSSEESSESEKSDEEEEEKESSPKPKKKKPLAVKKLSSDEESEESDVE 300
Query: 254 EL---------TLISKRLNRIWKHRQSKYKGSGKAKGKSESSGQKKSSLKEVTCFECKES 304
L TLIS + + +S+ + K ++ Q+ S ES
Sbjct: 301 VLPQKKKRGAVTLISDSEDEKDQKSESEASDVEEKVSKKKAKKQESS-----------ES 349
Query: 305 GHYKSD--CPKLKKDKKPKKHFKTKKSLMVTFDESESEDVDSD-GESKDSWLLSKTKKQS 361
G S+ +K KK +K K KK +++ + + E +D++ E + L K +K+
Sbjct: 350 GSDSSEGSITVNRKSKKKEKPEKKKKGIIMDSSKLQKETIDAERAEKERRKRLEKKQKEF 409
Query: 362 QRELLTLTQNQKEILTQTMKMR 383
+L ++ E+LT T R
Sbjct: 410 NGIVLEEGEDLTEMLTGTSSQR 431
>POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1199
Score = 50.8 bits (120), Expect = 3e-05
Identities = 53/189 (28%), Positives = 82/189 (43%), Gaps = 21/189 (11%)
Query: 743 RLGHASMRKISQLSK--------LNLVRGLPNLKFASDALCEACQKGKFTKVPFKAKNVV 794
+L H S K+ L + LN R L N+ C+AC + +K K V
Sbjct: 849 QLTHLSFSKMKALLERSHSPYYMLNRDRTLKNIT----ETCKACAQVNASKSAVKQGTRV 904
Query: 795 STSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLTRKDESHVVFSTFIAQ 854
RP ID F +K + G +Y +V +D +S W F T+K+ + VV + +
Sbjct: 905 RGHRPGTHWEID-FTEIKP-GLYGYKYLLVFIDTFSGWIEA-FPTKKETAKVVTKKLLEE 961
Query: 855 VQNEKACRIVRVRSDHGGEF-----ESLFDSYGIAHDFSCPRTPQQNGVVERKNRTLQEM 909
+ V + +D+G F +++ D GI C PQ +G VER NRT++E
Sbjct: 962 IFPRFGMPQV-LGTDNGPAFVSKVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKET 1020
Query: 910 ARTMLQETG 918
+ TG
Sbjct: 1021 LTKLTLATG 1029
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.323 0.137 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,961,635
Number of Sequences: 164201
Number of extensions: 7247375
Number of successful extensions: 32575
Number of sequences better than 10.0: 498
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 429
Number of HSP's that attempted gapping in prelim test: 29548
Number of HSP's gapped (non-prelim): 2104
length of query: 1562
length of database: 59,974,054
effective HSP length: 124
effective length of query: 1438
effective length of database: 39,613,130
effective search space: 56963680940
effective search space used: 56963680940
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 73 (32.7 bits)
Lotus: description of TM0151.11