BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0147a.4
(354 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei... 92 2e-18
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei... 92 2e-18
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei... 92 2e-18
POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23... 69 2e-11
POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.2... 68 3e-11
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 61 4e-09
POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse transcript... 60 1e-08
YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II 50 1e-05
POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse transcript... 49 2e-05
POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.2... 48 3e-05
POL_GALV (P21414) Pol polyprotein [Contains: Protease (EC 3.4.23... 47 1e-04
POL_MLVRK (P31795) Pol polyprotein [Contains: Protease (EC 3.4.2... 46 2e-04
POL_MLVRD (P11227) Pol polyprotein [Contains: Protease (EC 3.4.2... 46 2e-04
POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC 3.4.2... 44 6e-04
POL_MLVF5 (P26810) Pol polyprotein [Contains: Protease (EC 3.4.2... 44 6e-04
POL3_MOUSE (P11367) Retrovirus-related Pol polyprotein (Endonucl... 44 6e-04
POL_MLVFF (P26809) Pol polyprotein [Contains: Protease (EC 3.4.2... 44 8e-04
POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.2... 43 0.001
POL_MLVCB (P08361) Pol polyprotein [Contains: Reverse transcript... 42 0.002
POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.2... 41 0.004
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
type 3
Length = 1333
Score = 92.0 bits (227), Expect = 2e-18
Identities = 54/163 (33%), Positives = 81/163 (49%), Gaps = 1/163 (0%)
Query: 1 IRPPTTVWENIYMDSIGGLPKSKGKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFIQE 60
I P WE++ MD I LP+S G + VVVDR +K A +P +A + A F Q
Sbjct: 977 IPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQR 1036
Query: 61 IIRLHGFPSTIVSDHDS-FPE*FLEVLIQGAGTQLKFSSAYHPQTDGQTEVVNRCLEAYL 119
+I G P I++D+D F + +KFS Y PQTDGQTE N+ +E L
Sbjct: 1037 VIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLL 1096
Query: 120 RRLIWTCPKNWSNCLAWAEFWFNTNYNTSRNMSPFNALSGQDP 162
R + T P W + ++ + +N +++ M+PF + P
Sbjct: 1097 RCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSP 1139
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
type 2
Length = 1333
Score = 92.0 bits (227), Expect = 2e-18
Identities = 54/163 (33%), Positives = 81/163 (49%), Gaps = 1/163 (0%)
Query: 1 IRPPTTVWENIYMDSIGGLPKSKGKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFIQE 60
I P WE++ MD I LP+S G + VVVDR +K A +P +A + A F Q
Sbjct: 977 IPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQR 1036
Query: 61 IIRLHGFPSTIVSDHDS-FPE*FLEVLIQGAGTQLKFSSAYHPQTDGQTEVVNRCLEAYL 119
+I G P I++D+D F + +KFS Y PQTDGQTE N+ +E L
Sbjct: 1037 VIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLL 1096
Query: 120 RRLIWTCPKNWSNCLAWAEFWFNTNYNTSRNMSPFNALSGQDP 162
R + T P W + ++ + +N +++ M+PF + P
Sbjct: 1097 RCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSP 1139
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
type 1
Length = 1333
Score = 92.0 bits (227), Expect = 2e-18
Identities = 54/163 (33%), Positives = 81/163 (49%), Gaps = 1/163 (0%)
Query: 1 IRPPTTVWENIYMDSIGGLPKSKGKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFIQE 60
I P WE++ MD I LP+S G + VVVDR +K A +P +A + A F Q
Sbjct: 977 IPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQR 1036
Query: 61 IIRLHGFPSTIVSDHDS-FPE*FLEVLIQGAGTQLKFSSAYHPQTDGQTEVVNRCLEAYL 119
+I G P I++D+D F + +KFS Y PQTDGQTE N+ +E L
Sbjct: 1037 VIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLL 1096
Query: 120 RRLIWTCPKNWSNCLAWAEFWFNTNYNTSRNMSPFNALSGQDP 162
R + T P W + ++ + +N +++ M+PF + P
Sbjct: 1097 RCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSP 1139
>POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1161
Score = 68.6 bits (166), Expect = 2e-11
Identities = 49/164 (29%), Positives = 76/164 (45%), Gaps = 6/164 (3%)
Query: 1 IRP--PTTVWENIYMDSIGGLPKSKGKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFI 58
+RP P ++ Y+D IG LP S G +LVVVD +T F P +++ V A
Sbjct: 875 LRPVKPLKPFDKFYIDYIGPLPPSNGYLHVLVVVDSMTGFVWLYPTKAPSTSATVKA--- 931
Query: 59 QEIIRLHGFPSTIVSDHDS-FPE*FLEVLIQGAGTQLKFSSAYHPQTDGQTEVVNRCLEA 117
++ P + SD + F + G QL+FS+ YHPQ+ G+ E N ++
Sbjct: 932 LNMLTSIAIPKVLHSDQGAAFTSSTFADWAKEKGIQLEFSTPYHPQSSGKVERKNSDIKR 991
Query: 118 YLRRLIWTCPKNWSNCLAWAEFWFNTNYNTSRNMSPFNALSGQD 161
L +L+ P W + L + N +Y+ S +P L G D
Sbjct: 992 LLTKLLIGRPAKWYDLLPVVQLALNNSYSPSSKYTPHQLLFGVD 1035
>POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1157
Score = 68.2 bits (165), Expect = 3e-11
Identities = 49/164 (29%), Positives = 76/164 (45%), Gaps = 6/164 (3%)
Query: 1 IRP--PTTVWENIYMDSIGGLPKSKGKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFI 58
+RP P ++ ++D IG LP S G +LVVVD +T F P +++ V A
Sbjct: 877 LRPERPVKPFDKFFIDYIGPLPPSNGYLHVLVVVDSMTGFVWLYPTKAPSTSATVKA--- 933
Query: 59 QEIIRLHGFPSTIVSDHDS-FPE*FLEVLIQGAGTQLKFSSAYHPQTDGQTEVVNRCLEA 117
++ P I SD + F + G QL+FS+ YHPQ+ G+ E N ++
Sbjct: 934 LNMLTSIAVPKVIHSDQGAAFTSATFADWAKNKGIQLEFSTPYHPQSSGKVERKNSDIKR 993
Query: 118 YLRRLIWTCPKNWSNCLAWAEFWFNTNYNTSRNMSPFNALSGQD 161
L +L+ P W + L + N +Y+ S +P L G D
Sbjct: 994 LLTKLLVGRPAKWYDLLPVVQLALNNSYSPSSKYTPHQLLFGID 1037
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 61.2 bits (147), Expect = 4e-09
Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 9/162 (5%)
Query: 4 PTTVWENIYMDSIGGLPKSK-GKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFIQEII 62
P ++ + +D+IG LPKS+ G E + ++ LTK+ +P+ + SA VA + I
Sbjct: 961 PEHAFDRVVVDTIGPLPKSENGNEYAVTLICDLTKYLVAIPIANK-SAKTVAKAIFESFI 1019
Query: 63 RLHGFPSTIVSDHDSFPE*FLEVLIQGAGTQLKF----SSAYHPQTDGQTEVVNRCLEAY 118
+G T ++D + + +I LK S+A+H QT G E +R L Y
Sbjct: 1020 LKYGPMKTFITDMGTE---YKNSIITDLCKYLKIKNITSTAHHHQTVGVVERSHRTLNEY 1076
Query: 119 LRRLIWTCPKNWSNCLAWAEFWFNTNYNTSRNMSPFNALSGQ 160
+R I T +W L + + FNT + N P+ + G+
Sbjct: 1077 IRSYISTDKTDWDVWLQYFVYCFNTTQSMVHNYCPYELVFGR 1118
>POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)]
Length = 886
Score = 59.7 bits (143), Expect = 1e-08
Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 6/164 (3%)
Query: 1 IRP--PTTVWENIYMDSIGGLPKSKGKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFI 58
+RP P ++ ++D IG LP S+G +LVVVD +T F P +++ V +
Sbjct: 667 LRPDRPQKPFDKFFIDYIGPLPPSQGYLYVLVVVDGMTGFTWLYPTKAPSTSATVKS--- 723
Query: 59 QEIIRLHGFPSTIVSDHDS-FPE*FLEVLIQGAGTQLKFSSAYHPQTDGQTEVVNRCLEA 117
++ P I SD + F + G L+FS+ YHPQ+ + E N ++
Sbjct: 724 LNVLTSIAIPKVIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSGSKVERKNSDIKR 783
Query: 118 YLRRLIWTCPKNWSNCLAWAEFWFNTNYNTSRNMSPFNALSGQD 161
L +L+ P W + L + N Y+ +P L G D
Sbjct: 784 LLTKLLVGRPTKWYDLLPVVQLALNNTYSPVLKYTPHQLLFGID 827
>YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II
Length = 1268
Score = 49.7 bits (117), Expect = 1e-05
Identities = 34/107 (31%), Positives = 54/107 (49%), Gaps = 7/107 (6%)
Query: 4 PTTVWENIYMDSIGGLPKSKGKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFIQEIIR 63
P W+ I++D G L +LVVVD TK+A + L SA ++EI
Sbjct: 845 PEAPWKRIHIDFAGPLNGCY----LLVVVDAKTKYAE-VKLTRSISAV-TTIDLLEEIFS 898
Query: 64 LHGFPSTIVSDHDS-FPE*FLEVLIQGAGTQLKFSSAYHPQTDGQTE 109
+HG+P TI+SD+ + + Q G + K S+ Y+P+++G E
Sbjct: 899 IHGYPETIISDNGTQLTSHLFAQMCQSHGIEHKTSAVYYPRSNGAAE 945
>POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 1046
Score = 48.9 bits (115), Expect = 2e-05
Identities = 49/166 (29%), Positives = 72/166 (42%), Gaps = 8/166 (4%)
Query: 4 PTTVWENIYMDSIGGLPKSKGKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFIQEIIR 63
P WE +D P G + +LV VD + + P +A VA ++EI
Sbjct: 761 PGVYWE---IDFTEVKPHYAGYKYLLVFVDTFSGWVEAYPT-RQETAHMVAKKILEEIFP 816
Query: 64 LHGFPSTIVSDHD-SFPE*FLEVLIQGAGTQLKFSSAYHPQTDGQTEVVNRCLEAYLRRL 122
G P I SD+ +F + L + G K AY PQ+ GQ E +NR ++ L +L
Sbjct: 817 RFGLPKVIGSDNGPAFVSQVSQGLARTLGINWKLHCAYRPQSSGQVERMNRTIKETLTKL 876
Query: 123 -IWTCPKNWSNCLAWAEFWFNTNYNTSRNMSPFNAL-SGQDPLSLL 166
+ T K+W L+ A N ++P+ L G PLS L
Sbjct: 877 TLETGLKDWRRLLSLALLRARNTPNRF-GLTPYEILYGGPPPLSTL 921
>POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1189
Score = 48.1 bits (113), Expect = 3e-05
Identities = 49/166 (29%), Positives = 72/166 (42%), Gaps = 8/166 (4%)
Query: 4 PTTVWENIYMDSIGGLPKSKGKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFIQEIIR 63
P WE +D P G + +LV VD + + P +A VA ++EI
Sbjct: 904 PGVYWE---IDFTEVKPHYAGYKYLLVFVDTFSGWVEAFPT-RQETAHIVAKKILEEIFP 959
Query: 64 LHGFPSTIVSDHD-SFPE*FLEVLIQGAGTQLKFSSAYHPQTDGQTEVVNRCLEAYLRRL 122
G P I SD+ +F + L + G K AY PQ+ GQ E +NR ++ L +L
Sbjct: 960 RFGLPKVIGSDNGPAFVSQVSQGLARILGINWKLHCAYRPQSSGQVERMNRTIKETLTKL 1019
Query: 123 -IWTCPKNWSNCLAWAEFWFNTNYNTSRNMSPFNAL-SGQDPLSLL 166
+ T K+W L+ A N ++P+ L G PLS L
Sbjct: 1020 TLETGLKDWRRLLSLALLRARNTPNRF-GLTPYEILYGGPPPLSTL 1064
>POL_GALV (P21414) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1165
Score = 46.6 bits (109), Expect = 1e-04
Identities = 48/170 (28%), Positives = 72/170 (42%), Gaps = 13/170 (7%)
Query: 4 PTTVWENIYMDSIGGLPKSKGKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFIQEIIR 63
P WE +D P G + +LV +D + + P +A V ++EI+
Sbjct: 876 PGVYWE---VDFTEIKPGRYGNKYLLVFIDTFSGWVEAFPT-KTETALIVCKKILEEILP 931
Query: 64 LHGFPSTIVSDHDSFPE*FLEVLIQGAGTQL----KFSSAYHPQTDGQTEVVNRCLEAYL 119
G P + SD+ F+ + QG TQL K AY PQ+ GQ E +NR ++ L
Sbjct: 932 RFGIPKVLGSDNGPA---FVAQVSQGLATQLGINWKLHCAYRPQSSGQVERMNRTIKETL 988
Query: 120 RRL-IWTCPKNWSNCLAWAEFWFNTNYNTSRNMSPFNALSGQDPLSLLKG 168
+L + T K+W L A N ++P+ L G P L G
Sbjct: 989 TKLALETGGKDWVTLLPLA-LLRARNTPGRFGLTPYEILYGGPPPILESG 1037
>POL_MLVRK (P31795) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] (Fragment)
Length = 581
Score = 45.8 bits (107), Expect = 2e-04
Identities = 43/161 (26%), Positives = 71/161 (43%), Gaps = 7/161 (4%)
Query: 4 PTTVWENIYMDSIGGLPKSKGKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFIQEIIR 63
P T WE + + GL G + +LV VD + + P H +A V ++EI
Sbjct: 294 PGTHWEIDFTEVKPGL---YGYKYLLVFVDTFSGWVEAFPTKHE-TAKIVTKKLLEEIFP 349
Query: 64 LHGFPSTIVSDHD-SFPE*FLEVLIQGAGTQLKFSSAYHPQTDGQTEVVNRCLEAYLRRL 122
G P + +D+ +F + + + G K AY PQ+ GQ E +NR ++ L +L
Sbjct: 350 RFGMPQVLGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKL 409
Query: 123 -IWTCPKNWSNCLAWAEFWFNTNYNTSRNMSPFNALSGQDP 162
+ T ++W L A + N ++P+ L G P
Sbjct: 410 TLATGTRDWVLLLPLA-LYRARNTPGPHGLTPYEILYGAPP 449
>POL_MLVRD (P11227) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1196
Score = 45.8 bits (107), Expect = 2e-04
Identities = 43/161 (26%), Positives = 71/161 (43%), Gaps = 7/161 (4%)
Query: 4 PTTVWENIYMDSIGGLPKSKGKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFIQEIIR 63
P T WE + + GL G + +LV VD + + P H +A V ++EI
Sbjct: 909 PGTHWEIDFTEVKPGL---YGYKYLLVFVDTFSGWVEAFPTKHE-TAKIVTKKLLEEIFP 964
Query: 64 LHGFPSTIVSDHD-SFPE*FLEVLIQGAGTQLKFSSAYHPQTDGQTEVVNRCLEAYLRRL 122
G P + +D+ +F + + + G K AY PQ+ GQ E +NR ++ L +L
Sbjct: 965 RFGMPQVLGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKL 1024
Query: 123 -IWTCPKNWSNCLAWAEFWFNTNYNTSRNMSPFNALSGQDP 162
+ T ++W L A + N ++P+ L G P
Sbjct: 1025 TLATGTRDWVLLLPLA-LYRARNTPGPHGLTPYEILYGAPP 1064
>POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 43.9 bits (102), Expect = 6e-04
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 7/161 (4%)
Query: 4 PTTVWENIYMDSIGGLPKSKGKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFIQEIIR 63
P T WE + + GL G + +LV VD + + P +A V ++EI
Sbjct: 914 PGTHWEIDFTEVKPGL---YGYKYLLVFVDTFSGWVEAFPT-KKETAKVVTKKLLEEIFP 969
Query: 64 LHGFPSTIVSDHD-SFPE*FLEVLIQGAGTQLKFSSAYHPQTDGQTEVVNRCLEAYLRRL 122
G P + +D+ +F + + G K AY PQ+ GQ E +NR ++ L +L
Sbjct: 970 RFGMPQVLGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKL 1029
Query: 123 -IWTCPKNWSNCLAWAEFWFNTNYNTSRNMSPFNALSGQDP 162
+ T ++W L A + N ++P+ L G P
Sbjct: 1030 TLATGSRDWVLLLPLA-LYRARNTPGPHGLTPYEILYGAPP 1069
>POL_MLVF5 (P26810) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 43.9 bits (102), Expect = 6e-04
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 7/161 (4%)
Query: 4 PTTVWENIYMDSIGGLPKSKGKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFIQEIIR 63
P T WE + + GL G + +LV VD + + P +A V ++EI
Sbjct: 914 PGTHWEIDFTEVKPGL---YGYKYLLVFVDTFSGWVEAFPT-KKETAKVVTKKLLEEIFP 969
Query: 64 LHGFPSTIVSDHD-SFPE*FLEVLIQGAGTQLKFSSAYHPQTDGQTEVVNRCLEAYLRRL 122
G P + +D+ +F + + G K AY PQ+ GQ E +NR ++ L +L
Sbjct: 970 RFGMPQVLGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKL 1029
Query: 123 -IWTCPKNWSNCLAWAEFWFNTNYNTSRNMSPFNALSGQDP 162
+ T ++W L A + N ++P+ L G P
Sbjct: 1030 TLATGSRDWVLLLPLA-LYRARNTPGPHGLTPYEILYGAPP 1069
>POL3_MOUSE (P11367) Retrovirus-related Pol polyprotein
(Endonuclease) (Fragment)
Length = 390
Score = 43.9 bits (102), Expect = 6e-04
Identities = 42/159 (26%), Positives = 70/159 (43%), Gaps = 7/159 (4%)
Query: 6 TVWENIYMDSIGGLPKSKGKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFIQEIIRLH 65
T WE + + GL G + +LV VD + + P H +A V ++EI
Sbjct: 120 THWEIDFTEVKPGL---YGYKYLLVFVDTFSGWVEAFPTKHE-TAKIVTKKLLEEIFPRF 175
Query: 66 GFPSTIVSDHD-SFPE*FLEVLIQGAGTQLKFSSAYHPQTDGQTEVVNRCLEAYLRRL-I 123
G P + +D+ +F + + + G K AY PQ+ GQ E +NR ++ L +L +
Sbjct: 176 GMPQVLGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTL 235
Query: 124 WTCPKNWSNCLAWAEFWFNTNYNTSRNMSPFNALSGQDP 162
T ++W L A + N ++P+ L G P
Sbjct: 236 ATGTRDWVLLLPLA-LYRARNTPGPHGLTPYEILYGAPP 273
>POL_MLVFF (P26809) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 43.5 bits (101), Expect = 8e-04
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 7/161 (4%)
Query: 4 PTTVWENIYMDSIGGLPKSKGKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFIQEIIR 63
P T WE + + GL G + +LV +D + + P +A V ++EI
Sbjct: 914 PGTHWEIDFTEVKPGL---YGYKYLLVFIDTFSGWVEAFPT-KKETAKVVTKKLLEEIFP 969
Query: 64 LHGFPSTIVSDHD-SFPE*FLEVLIQGAGTQLKFSSAYHPQTDGQTEVVNRCLEAYLRRL 122
G P + +D+ +F + + G K AY PQ+ GQ E +NR ++ L +L
Sbjct: 970 RFGMPQVLGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKL 1029
Query: 123 -IWTCPKNWSNCLAWAEFWFNTNYNTSRNMSPFNALSGQDP 162
+ T ++W L A + N ++P+ L G P
Sbjct: 1030 TLATGSRDWVLLLPLA-LYRARNTPGPHGLTPYEILYGAPP 1069
>POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1199
Score = 42.7 bits (99), Expect = 0.001
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 7/161 (4%)
Query: 4 PTTVWENIYMDSIGGLPKSKGKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFIQEIIR 63
P T WE + + GL G + +LV +D + + P +A V ++EI
Sbjct: 909 PGTHWEIDFTEIKPGL---YGYKYLLVFIDTFSGWIEAFPT-KKETAKVVTKKLLEEIFP 964
Query: 64 LHGFPSTIVSDHD-SFPE*FLEVLIQGAGTQLKFSSAYHPQTDGQTEVVNRCLEAYLRRL 122
G P + +D+ +F + + G K AY PQ+ GQ E +NR ++ L +L
Sbjct: 965 RFGMPQVLGTDNGPAFVSKVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKL 1024
Query: 123 -IWTCPKNWSNCLAWAEFWFNTNYNTSRNMSPFNALSGQDP 162
+ T ++W L A + N ++P+ L G P
Sbjct: 1025 TLATGSRDWVLLLPLA-LYRARNTPGPHGLTPYEILYGAPP 1064
>POL_MLVCB (P08361) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 282
Score = 42.0 bits (97), Expect = 0.002
Identities = 37/145 (25%), Positives = 63/145 (42%), Gaps = 4/145 (2%)
Query: 20 PKSKGKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFIQEIIRLHGFPSTIVSDHD-SF 78
P+ G + +LV VD + + P +A V ++EI G P + +D+ +F
Sbjct: 8 PRLYGYKYLLVFVDTFSGWIEAFPT-KKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAF 66
Query: 79 PE*FLEVLIQGAGTQLKFSSAYHPQTDGQTEVVNRCLEAYLRRL-IWTCPKNWSNCLAWA 137
+ + G K AY PQ+ GQ E +NR ++ L +L + T ++W L A
Sbjct: 67 VSKVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLA 126
Query: 138 EFWFNTNYNTSRNMSPFNALSGQDP 162
+ N ++P+ L G P
Sbjct: 127 -LYRARNTPGPHGLTPYEILYGAPP 150
>POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1196
Score = 41.2 bits (95), Expect = 0.004
Identities = 41/161 (25%), Positives = 68/161 (41%), Gaps = 7/161 (4%)
Query: 4 PTTVWENIYMDSIGGLPKSKGKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFIQEIIR 63
P + WE + + GL G + +LV VD + + P +A V+ ++EI
Sbjct: 909 PGSHWEIDFTEVKPGL---YGYKYLLVFVDTFSGWVEAFPTKRE-TARVVSKKLLEEIFP 964
Query: 64 LHGFPSTIVSDHD-SFPE*FLEVLIQGAGTQLKFSSAYHPQTDGQTEVVNRCLEAYLRRL 122
G P + SD+ +F + + G K AY PQ+ GQ E +NR ++ L +L
Sbjct: 965 RFGMPQVLGSDNGPAFTSQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKL 1024
Query: 123 IWTC-PKNWSNCLAWAEFWFNTNYNTSRNMSPFNALSGQDP 162
++W L A + N ++P+ L G P
Sbjct: 1025 TLAAGTRDWVLLLPLA-LYRARNTPGPHGLTPYEILYGAPP 1064
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.349 0.154 0.574
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,160,324
Number of Sequences: 164201
Number of extensions: 1487792
Number of successful extensions: 4961
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 4936
Number of HSP's gapped (non-prelim): 32
length of query: 354
length of database: 59,974,054
effective HSP length: 111
effective length of query: 243
effective length of database: 41,747,743
effective search space: 10144701549
effective search space used: 10144701549
T: 11
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 66 (30.0 bits)
Lotus: description of TM0147a.4