BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0142.9
         (341 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CMF1_BACSU (P39145) ComF operon protein 1                              30  6.7
CLPB_CORDI (Q6NF05) Chaperone clpB                                     30  6.7

>CMF1_BACSU (P39145) ComF operon protein 1
          Length = 463

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 11/38 (28%), Positives = 22/38 (56%), Gaps = 1/38 (2%)

Query: 155 WKNCPKAWEGQFTRGDKGTTTVILEAVA-SHDLWIWHI 191
           WK+    W+G+ + G +    V++EA++   +L IW +
Sbjct: 110 WKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAV 147


>CLPB_CORDI (Q6NF05) Chaperone clpB
          Length = 849

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 23/69 (33%), Positives = 34/69 (48%), Gaps = 14/69 (20%)

Query: 1   RKYLDRDHAAANQRLINDYFANEPTYDDAM-----FRRRYRMQKHLFLRIVDD-----LS 50
           RKY+++D  AA +R     F  EP+ +DA+      + RY +  H  +RI D       +
Sbjct: 322 RKYIEKD--AALERRFQQVFVGEPSVEDAVGILRGLKERYEV--HHGVRIQDSALVAAAT 377

Query: 51  SSDNYFTQR 59
            SD Y T R
Sbjct: 378 LSDRYITSR 386


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.340    0.148    0.484 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,922,494
Number of Sequences: 164201
Number of extensions: 1354802
Number of successful extensions: 4130
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4130
Number of HSP's gapped (non-prelim): 2
length of query: 341
length of database: 59,974,054
effective HSP length: 111
effective length of query: 230
effective length of database: 41,747,743
effective search space: 9601980890
effective search space used: 9601980890
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 66 (30.0 bits)