BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0141.1
         (705 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

LPRC_HUMAN (P42704) 130 kDa leucine-rich protein (LRP 130) (GP13...    45  5e-04
YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I      42  0.006
MRAW_BUCAP (O85295) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)     35  0.89
VIVD_BPT7 (P03726) Internal virion protein D                           33  2.6
AB11_RAT (O70127) Bile salt export pump (ATP-binding cassette, s...    32  5.7
TRPG_SCHPO (Q92370) Anthranilate synthase component II (EC 4.1.3...    32  7.5
LEM2_MOUSE (Q00690) E-selectin precursor (Endothelial leukocyte ...    31  9.8

>LPRC_HUMAN (P42704) 130 kDa leucine-rich protein (LRP 130) (GP130)
           (Leucine-rich PPR-motif containing protein)
          Length = 1273

 Score = 45.4 bits (106), Expect = 5e-04
 Identities = 51/215 (23%), Positives = 90/215 (41%), Gaps = 40/215 (18%)

Query: 286 ARKVFDGLQNRNVVV----WTSLMSAYLQNRYFEETLDLLTCMDQEDTLPNECTFKVLLG 341
           A +++D LQ    V     + +L+  YLQN Y     D L  M++ +  PN  T++ L+ 
Sbjct: 25  AHRIWDTLQKLGAVYDVSHYNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVTYQRLIA 84

Query: 342 ACAGIALLKHGDLLHARLEKLGFKNYVIVNNALINMYSKSGDIDSSYNVFSDTMCRDVTT 401
           +   +     GD+  A  + LGF               K+ D+  +  VFS         
Sbjct: 85  SYCNV-----GDIEGAS-KILGF--------------MKTKDLPVTEAVFS--------- 115

Query: 402 WNSMICGYSHHGLGQEALRVFQDMKSAGESPNNVTFVGVLSACAHLALVDKGLDYLYNEM 461
             +++ G++  G  + A  +   M+ AG  P   T++ +L+A A    +D     L    
Sbjct: 116 --ALVTGHARAGDMENAENILTVMRDAGIEPGPDTYLALLNAYAEKGDIDHVKQTL---E 170

Query: 462 KNHKIEPGLEHYTCMVVL--YCRAGLLEKAENFMK 494
           K  K E  L     + ++  + +AG L  ++ F K
Sbjct: 171 KVEKFELHLMDRDLLQIIFSFSKAGYLSMSQKFWK 205


>YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I
          Length = 1261

 Score = 42.0 bits (97), Expect = 0.006
 Identities = 35/137 (25%), Positives = 66/137 (47%), Gaps = 11/137 (8%)

Query: 350  KHGDLLHARLEKLGFKNYVIVNNALINMYSKSGDID---SSYNVFSDTMCRDVTT----W 402
            K  +L    ++ LG+         LIN  ++ GD D   ++ N+F +T   +V      +
Sbjct: 870  KSSNLFCDNMKMLGYIPRASTFAHLINNSTRRGDTDDATTALNIFEETKRHNVKPSVFLY 929

Query: 403  NSMICGYSHHGLGQEALRVFQDMKSAGESPNNVTFVGVLSACAHLALVDKGL-DYLYNEM 461
            N+++          E  ++FQ+MK +G  P +VT+  V++A   +   D+ L + L+ EM
Sbjct: 930  NAVLSKLGRARRTTECWKLFQEMKESGLLPTSVTYGTVINAACRIG--DESLAEKLFAEM 987

Query: 462  KNH-KIEPGLEHYTCMV 477
            +N    +P +  Y  M+
Sbjct: 988  ENQPNYQPRVAPYNTMI 1004


>MRAW_BUCAP (O85295) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)
          Length = 312

 Score = 34.7 bits (78), Expect = 0.89
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 12/85 (14%)

Query: 594 ESNEINKKVQQLLAMIKPLGYVPNISAVLHDVEDEQKEGYLNCHSEKLAIAYGLMKMPSP 653
           E  EI K ++  L ++KP G +  IS   H +ED   + ++  +S+K  + YGL     P
Sbjct: 215 ELEEIKKGLENSLKILKPGGRLSIIS--FHSLEDRIVKNFMMKYSKKATVPYGL-----P 267

Query: 654 APIRIIKNLRMCDDCHTAVKLISKV 678
                ++ LR+C      +K+I+++
Sbjct: 268 ITENKLETLRIC-----KLKIINRI 287


>VIVD_BPT7 (P03726) Internal virion protein D
          Length = 1318

 Score = 33.1 bits (74), Expect = 2.6
 Identities = 21/61 (34%), Positives = 35/61 (56%), Gaps = 7/61 (11%)

Query: 351 HGDLL---HARLEKLGFKNYVI--VNNALINMYSKSGDIDSSYNVFSDTMCRDVTTWNSM 405
           HG+ L   ++R    GFKN     ++N++  M  ++G +D+ ++VF DT+    T WNS 
Sbjct: 214 HGETLDEYNSRSTFFGFKNAAEAELSNSVAGMAFRAGRLDNGFDVFKDTI--TPTRWNSH 271

Query: 406 I 406
           I
Sbjct: 272 I 272


>AB11_RAT (O70127) Bile salt export pump (ATP-binding cassette,
           sub-family B, member 11) (Sister of P-glycoprotein)
          Length = 1321

 Score = 32.0 bits (71), Expect = 5.7
 Identities = 20/56 (35%), Positives = 25/56 (43%), Gaps = 7/56 (12%)

Query: 317 TLDLLTCMDQEDTLPNECTFKVLLGACA-------GIALLKHGDLLHARLEKLGFK 365
           T  LL    Q   + + C F V+LG  +       G    K G+LL  RL K GFK
Sbjct: 782 TFSLLDKEQQRSEIHSMCLFFVILGCVSIFTQFLQGYTFAKSGELLTKRLRKFGFK 837


>TRPG_SCHPO (Q92370) Anthranilate synthase component II (EC
           4.1.3.27) [Includes: Glutamine amidotransferase;
           Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
           (IGPS); N-(5'-phosphoribosyl)anthranilate isomerase (EC
           5.3.1.24) (PRAI)]
          Length = 759

 Score = 31.6 bits (70), Expect = 7.5
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 8/81 (9%)

Query: 333 ECTFKVLLGACAGIALLKHGDLLHARLEKLGFKNYVIVNNALINMYSKSGDIDSSYNVFS 392
           +C F+ + G       + HG +     + LGF   +  N ++   +S +G I S  +   
Sbjct: 112 QCIFETMGGKVDSAGEIIHGKVSKINHDGLGFYQGIPQNISVTRYHSLAGKISSLPD--- 168

Query: 393 DTMCRDVTTW--NSMICGYSH 411
              C DVT+W  N +I G  H
Sbjct: 169 ---CLDVTSWTENGVIMGARH 186


>LEM2_MOUSE (Q00690) E-selectin precursor (Endothelial leukocyte
           adhesion molecule 1) (ELAM-1) (Leukocyte-endothelial
           cell adhesion molecule 2) (LECAM2)
          Length = 612

 Score = 31.2 bits (69), Expect = 9.8
 Identities = 24/83 (28%), Positives = 37/83 (43%), Gaps = 8/83 (9%)

Query: 566 NIKKEPGASWLEIRNVNHVFVSEGCKHPESNEINKKVQQLLAMIKPLGYVPNISAVLHDV 625
           N+K  P   W+ IR VN+V++  G   P + E      Q  A  +P     N   V   +
Sbjct: 62  NLKHSPSYYWIGIRKVNNVWIWVGTGKPLTEE-----AQNWAPGEPNNKQRNEDCVEIYI 116

Query: 626 EDEQKEGYLN---CHSEKLAIAY 645
           +  +  G  N   C+ +KLA+ Y
Sbjct: 117 QRTKDSGMWNDERCNKKKLALCY 139


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.323    0.137    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,654,661
Number of Sequences: 164201
Number of extensions: 3382433
Number of successful extensions: 7037
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 7027
Number of HSP's gapped (non-prelim): 16
length of query: 705
length of database: 59,974,054
effective HSP length: 117
effective length of query: 588
effective length of database: 40,762,537
effective search space: 23968371756
effective search space used: 23968371756
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 69 (31.2 bits)