BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0134.24
(366 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog 104 4e-22
LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog 102 2e-21
POL2_MOUSE (P11369) Retrovirus-related Pol polyprotein [Contains... 95 2e-19
YTX2_XENLA (P14381) Transposon TX1 hypothetical 149 kDa protein ... 88 3e-17
PO22_POPJA (Q03274) Retrovirus-related Pol polyprotein from type... 71 4e-12
POLR_DROME (P16423) Retrovirus-related Pol polyprotein from type... 67 9e-11
PO23_POPJA (Q05118) Retrovirus-related Pol polyprotein from type... 62 2e-09
MC50_ARATH (P92555) Hypothetical mitochondrial protein AtMg01250... 60 7e-09
M310_ARATH (P93295) Hypothetical mitochondrial protein AtMg00310... 58 3e-08
PO21_NASVI (Q03278) Retrovirus-related Pol polyprotein from type... 55 2e-07
PO21_SCICO (Q03279) Retrovirus-related Pol polyprotein from type... 39 0.027
RTJK_DROME (P21328) RNA-directed DNA polymerase from mobile elem... 38 0.035
YMH5_CAEEL (P34472) Hypothetical protein F58A4.5 in chromosome III 37 0.079
YO84_CAEEL (P34620) Hypothetical protein ZK1236.4 in chromosome III 36 0.18
LMA2_HUMAN (P24043) Laminin alpha-2 chain precursor (Laminin M c... 31 5.6
ISPE_AQUAE (O67060) 4-diphosphocytidyl-2-C-methyl-D-erythritol k... 31 5.6
ANK1_HUMAN (P16157) Ankyrin 1 (Erythrocyte ankyrin) (Ankyrin R) 31 5.6
A8B2_HUMAN (P98198) Potential phospholipid-transporting ATPase I... 30 7.4
SPEB_SCHPO (Q10088) Putative agmatinase 1 precursor (EC 3.5.3.11... 30 9.6
>LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog
Length = 1260
Score = 104 bits (259), Expect = 4e-22
Identities = 83/371 (22%), Positives = 183/371 (48%), Gaps = 22/371 (5%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEARR-QGKECMIFKVDYKKA 59
K+L+ R+ + + ++I Q FI G ++ + V+ + + K+ MI +D +KA
Sbjct: 544 KILTNRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINVIQHINKLKNKDHMILSIDAEKA 603
Query: 60 YDSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDPLA 119
+D+++ F+ ++++G ++ I+A T ++++NG + ++ G RQG PL+
Sbjct: 604 FDNIQHPFMIRTLKKIGIEGTFLKLIEAIYSKPTANIILNGVKLKSFPLRSGTRQGCPLS 663
Query: 120 PFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLVLK 179
P LF +V E L+ +R+ + + KG +G + +++SL F DD + E + + L
Sbjct: 664 PLLFNIVMEVLAIAIREEKAI---KGIHIGSEEIKLSL--FADDMIVYLENTRDSTTKLL 718
Query: 180 GMLRYFELLSGLKVNFSKNRFPGISLGEGTTQCFARMLNCRVMKEPFTYLGIFVGANPR- 238
+++ + +SG K+N K+ + + + V+ + YLG+++ + +
Sbjct: 719 EVIKEYSNVSGYKINTHKSVAFIYTNNNQAEKTVKDSIPFTVVPKKMKYLGVYLTKDVKD 778
Query: 239 -RRSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSF----FKFPRGIA 293
+ +E L ++ + + WK S+ G++ ++K +S +P +F K P
Sbjct: 779 LYKENYETLRKEIAEDVNKWKNIPCSWLGRINIVK--MSILPKAIYNFNAIPIKAPLSYF 836
Query: 294 KECKRIQMDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSK--WRWRN 351
K+ ++I + F+W ++ K AK + + + G+ + DL + ++++ K W W
Sbjct: 837 KDLEKIILHFIWNQK----KPQIAK-TLLSNKNKAGGITLPDLRLYYKSIVIKTAWYWHK 891
Query: 352 LGEEDRLWGEV 362
E D +W +
Sbjct: 892 NREVD-VWNRI 901
>LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog
Length = 1259
Score = 102 bits (253), Expect = 2e-21
Identities = 84/357 (23%), Positives = 168/357 (46%), Gaps = 21/357 (5%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEARR-QGKECMIFKVDYKKA 59
K+L+ ++ + + ++I Q FI ++ + ++ R + MI +D +KA
Sbjct: 544 KILANQIQQHIKKLIHHDQVGFIPAMQGWFNIRKSINIIQHINRTKDTNHMIISIDAEKA 603
Query: 60 YDSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDPLA 119
+D ++ F+ + +LG ++ I+A T ++++NG E ++ G RQG PL+
Sbjct: 604 FDKIQQPFMLKPLNKLGIDGTYLKIIRAIYDKPTANIILNGQKLEAPPLKTGTRQGCPLS 663
Query: 120 PFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGE---ASTQNVL 176
P L +V E L+ +RQ + + KG ++G + +++SL F DD + E S QN+L
Sbjct: 664 PLLPNIVLEVLARAIRQEKEI---KGIQLGKEEVKLSL--FADDMIVYLENPIVSAQNLL 718
Query: 177 VLKGMLRYFELLSGLKVNFSKNRFPGISLGEGTTQCFARMLNCRVMKEPFTYLGIFVGAN 236
L + F +SG K+N K++ + T L + + YLGI + +
Sbjct: 719 KL---ISNFSKVSGYKINVQKSQAFLYTNNRQTESQIMSELPFTIASKRIKYLGIQLTRD 775
Query: 237 PRR--RSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVL--SSIPLFYLSFFKFPRGI 292
+ + ++PL+ ++K+ WK S+ G++ ++K + I F K P
Sbjct: 776 VKDLFKENYKPLLNEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMTF 835
Query: 293 AKECKRIQMDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRW 349
E ++ + F+W + K ST+ + + G+ + D + + +A ++K W
Sbjct: 836 FTELEKTTLKFIWNQ-----KRAHIAKSTLSQKNKAGGITLPDFKLYYKATVTKTAW 887
>POL2_MOUSE (P11369) Retrovirus-related Pol polyprotein [Contains:
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1300
Score = 95.1 bits (235), Expect = 2e-19
Identities = 84/354 (23%), Positives = 161/354 (44%), Gaps = 15/354 (4%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEARR-QGKECMIFKVDYKKA 59
K+L+ R+ + +I Q FI G ++ + V+ + + K MI +D +KA
Sbjct: 571 KILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHYINKLKDKNHMIISLDAEKA 630
Query: 60 YDSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDPLA 119
+D ++ F+ ++ R G ++ IKA ++ VNG E ++ G RQG PL+
Sbjct: 631 FDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNGEKLEAIPLKSGTRQGCPLS 690
Query: 120 PFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLVLK 179
P+LF +V E L+ +RQ + + KG ++G + ++ISLL DD + + L
Sbjct: 691 PYLFNIVLEVLARAIRQQKEI---KGIQIGKEEVKISLL--ADDMIVYISDPKNSTRELL 745
Query: 180 GMLRYFELLSGLKVNFSKNRFPGISLGEGTTQCFARMLNCRVMKEPFTYLGIFVGANPR- 238
++ F + G K+N +K+ + + + ++ YLG+ + +
Sbjct: 746 NLINSFGEVVGYKINSNKSMAFLYTKNKQAEKEIRETTPFSIVTNNIKYLGVTLTKEVKD 805
Query: 239 -RRSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVL--SSIPLFYLSFFKFPRGIAKE 295
++ L ++K+ L+ WK S+ G++ ++K + +I F K P E
Sbjct: 806 LYDKNFKSLKKEIKEDLRRWKDLPCSWIGRINIVKMAILPKAIYRFNAIPIKIPTQFFNE 865
Query: 296 CKRIQMDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRW 349
+ F+W + K AK S + + G+ + DL+ + RA++ K W
Sbjct: 866 LEGAICKFVWNNK----KPRIAK-SLLKDKRTSGGITMPDLKLYYRAIVIKTAW 914
>YTX2_XENLA (P14381) Transposon TX1 hypothetical 149 kDa protein
(ORF 2)
Length = 1308
Score = 88.2 bits (217), Expect = 3e-17
Identities = 81/312 (25%), Positives = 143/312 (44%), Gaps = 18/312 (5%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEARRQGKECMIFKVDYKKAY 60
K +S R+ VL EVI QS + GR + D+V + +++ ARR G +D +KA+
Sbjct: 540 KAISLRLKSVLAEVIHPDQSYTVPGRTIFDNVFLIRDLLHFARRTGLSLAFLSLDQEKAF 599
Query: 61 DSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDPLAP 120
D V +L ++ F +++G++K SA V +N S T RG+RQG PL+
Sbjct: 600 DRVDHQYLIGTLQAYSFGPQFVGYLKTMYASAECLVKINWSLTAPLAFGRGVRQGCPLSG 659
Query: 121 FLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLVLKG 180
L+ + E L+R +RL G + M + L + DD + + + ++ +
Sbjct: 660 QLYSLAIEPFLCLLR--KRLT---GLVLKEPDMRVVLSAYADDVILVAQ-DLVDLERAQE 713
Query: 181 MLRYFELLSGLKVNFSKNRFPGISLGEGTTQCF---ARMLNCRVMKEPFTYLGIFVGAN- 236
+ S ++N+SK+ L EG+ + + + YLG+++ A
Sbjct: 714 CQEVYAAASSARINWSKSS----GLLEGSLKVDFLPPAFRDISWESKIIKYLGVYLSAEE 769
Query: 237 -PRRRSMWEPLVCKMKKRLQSWK--QKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIA 293
P ++ E C + RL WK K+LS G+ +I +++S + L +
Sbjct: 770 YPVSQNFIELEECVL-TRLGKWKGFAKVLSMRGRALVINQLVASQIWYRLICLSPTQEFI 828
Query: 294 KECKRIQMDFLW 305
+ +R +DFLW
Sbjct: 829 AKIQRRLLDFLW 840
>PO22_POPJA (Q03274) Retrovirus-related Pol polyprotein from type I
retrotransposable element R2 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 711
Score = 71.2 bits (173), Expect = 4e-12
Identities = 69/281 (24%), Positives = 129/281 (45%), Gaps = 22/281 (7%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEARRQGKECMIFKVDYKKAY 60
++L+KR+ + + +Q + L + L+ + + R Q K + +D +KA+
Sbjct: 91 RILAKRLEAAVE--LHPAQKGYARIDGTLVNSLLLDTYISSRREQRKTYNVVSLDVRKAF 148
Query: 61 DSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVN-GSPTEESVMQRGLRQGDPLA 119
D+V + ++RLG E +I + +T ++ V GS T + ++RG++QGDPL+
Sbjct: 149 DTVSHSSICRALQRLGIDEGTSNYITGSLSDSTTTIRVGPGSQTRKICIRRGVKQGDPLS 208
Query: 120 PFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLVLK 179
PFLF V + L ++ + G +G + +I +L F DD L + + L
Sbjct: 209 PFLFNAVLDELLCSLQSTPGI----GGTIGEE--KIPVLAFADDLLLLEDNDVLLPTTLA 262
Query: 180 GMLRYFELLSGLKVNFSKNRFPGISLGEGT----TQCFARMLNCRV----MKEPFTYLGI 231
+ +F L G+ +N K+ ++ G T+ F R+ N + + F YLG
Sbjct: 263 TVANFFR-LRGMSLNAKKSVSISVAASGGVCIPRTKPFLRVDNVLLPVTDRMQTFRYLGH 321
Query: 232 FVGANPRRRSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIK 272
F G + + P V + + L+ + L K+ LI+
Sbjct: 322 FFGLSGAAK----PTVYNLSRWLKCVEAAPLKPEQKLSLIR 358
>POLR_DROME (P16423) Retrovirus-related Pol polyprotein from type II
retrotransposable element R2DM [Contains: Protease (EC
3.4.23.-); Reverse transcriptase (EC 2.7.7.49);
Endonuclease]
Length = 1057
Score = 66.6 bits (161), Expect = 9e-11
Identities = 53/197 (26%), Positives = 91/197 (45%), Gaps = 10/197 (5%)
Query: 16 DESQSAFIGGRHMLDSVLVANEVVDEARRQGKECMIFKVDYKKAYDSVRSDFLYYMMRRL 75
D Q F+ D+ + + V+ + + + C I +D KA+DS+ +Y +R
Sbjct: 443 DPRQRGFLPTDGCADNATIVDLVLRHSHKHFRSCYIANLDVSKAFDSLSHASIYDTLRAY 502
Query: 76 GFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDPLAPFLFLVVAEWLSGLMR 135
G + ++ +++ + S+ +G +EE V RG++QGDPL+P LF +V + R
Sbjct: 503 GAPKGFVDYVQNTYEGGGTSLNGDGWSSEEFVPARGVKQGDPLSPILFNLVMD------R 556
Query: 136 QARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLVLKGMLRYFELLSGLKVNF 195
R L G KVG + F DD + E ++L L + ++ GLK+N
Sbjct: 557 LLRTLPSEIGAKVG--NAITNAAAFADDLVLFAETRMGLQVLLDKTLDFLSIV-GLKLNA 613
Query: 196 SKNRFPGISLGEGTTQC 212
K GI G+ +C
Sbjct: 614 DKCFTVGIK-GQPKQKC 629
>PO23_POPJA (Q05118) Retrovirus-related Pol polyprotein from type I
retrotransposable element R2 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 606
Score = 62.0 bits (149), Expect = 2e-09
Identities = 64/279 (22%), Positives = 120/279 (42%), Gaps = 19/279 (6%)
Query: 29 LDSVLVANEVVDEARRQGKECMIFKVDYKKAYDSVRSDFLYYMMRRLGFCEKWIGWIKAC 88
L ++++ + R +GK + +D +KA+D+V + MR G + +I +
Sbjct: 3 LANIIMLEHYIKLRRLKGKTYNVVSLDIRKAFDTVSHPAILRAMRAFGIDDGMQDFIMST 62
Query: 89 IQSATVSVLVNGSPTEESVMQRGLRQGDPLAPFLFLVVAEWLSGLMRQARRLNLFKGYKV 148
I A +++V G T + ++ G++QGDPL+P LF +V + L RLN +
Sbjct: 63 ITDAYTNIVVGGRTTNKIYIRNGVKQGDPLSPVLFNIVLDEL------VTRLNDEQPGAS 116
Query: 149 GMDGMEISLLQFLDDTLFIGEASTQNVLVLKGMLRYFELLSGLKVNFSKNRFPGISLGEG 208
+I+ L F DD L + + L YF G+ +N K + G
Sbjct: 117 MTPACKIASLAFADDLLLLEDRDIDVPNSLATTCAYFR-TRGMTLNPEKCASISAATVSG 175
Query: 209 TTQCFAR---MLNCRVMK-----EPFTYLGIFVGANPRRRSMWEPLVCKMKKRLQSWKQK 260
+ ++ ++ R +K F YLG+ + + +P V + + L++ ++
Sbjct: 176 RSVPRSKPSFTIDGRYIKPLGGINTFKYLGLTFSST----GVAKPTVYNLTRWLRNLEKA 231
Query: 261 MLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIAKECKRI 299
L K ++K+ L + L GI +EC R+
Sbjct: 232 PLKPNQKFYILKTHLLPRLFYGLQSPGVTAGILQECDRL 270
>MC50_ARATH (P92555) Hypothetical mitochondrial protein AtMg01250
(ORF102)
Length = 122
Score = 60.5 bits (145), Expect = 7e-09
Identities = 30/68 (44%), Positives = 42/68 (61%)
Query: 97 LVNGSPTEESVMQRGLRQGDPLAPFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEIS 156
++NG+P RGLRQGDPL+P+LF++ E LSGL R+A+ G +V + I+
Sbjct: 13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRIN 72
Query: 157 LLQFLDDT 164
L F DDT
Sbjct: 73 HLLFADDT 80
>M310_ARATH (P93295) Hypothetical mitochondrial protein AtMg00310
(ORF154)
Length = 154
Score = 58.2 bits (139), Expect = 3e-08
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 277 SIPLFYLSFFKFPRGIAKECKRIQMDFLWGREVGAGKICWAKWSTVCKIKEEE-GLGVKD 335
++P++ +S F+ + + K+ +F W KI W W +CK KE++ GLG +D
Sbjct: 2 ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRD 61
Query: 336 LERFNRALMSKWRWRNLGEEDRLWGEVLSSR 366
L FN+AL++K +R + + L +L SR
Sbjct: 62 LGWFNQALLAKQSFRIIHQPHTLLSRLLRSR 92
>PO21_NASVI (Q03278) Retrovirus-related Pol polyprotein from type I
retrotransposable element R2 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 1025
Score = 55.5 bits (132), Expect = 2e-07
Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 16/172 (9%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEARRQGKECMIFKVDYKKAY 60
++L+ R+G ++D Q AFI + ++ + + ++ EAR + K I +D KKA+
Sbjct: 404 RILANRIGE--HGLLDTRQRAFIVADGVAENTSLLSAMIKEARMKIKGLYIAILDVKKAF 461
Query: 61 DSVRSDFLYYMMRRLGF---CEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDP 117
DSV + +RR +I W+ ++ V G + RG+RQGDP
Sbjct: 462 DSVEHRSILDALRRKKLPLEMRNYIMWVYRNSKTRLEVVKTKGRWIRPA---RGVRQGDP 518
Query: 118 LAPFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGE 169
L+P LF V + + RRL G+ +G + +I L F DD + + E
Sbjct: 519 LSPLLFNCVMDAV------LRRLPENTGFLMGAE--KIGALVFADDLVLLAE 562
>PO21_SCICO (Q03279) Retrovirus-related Pol polyprotein from type I
retrotransposable element R2 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 869
Score = 38.5 bits (88), Expect = 0.027
Identities = 49/202 (24%), Positives = 91/202 (44%), Gaps = 18/202 (8%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEARRQGKECMIFKVDYKKAY 60
K+L++R V DE Q+A++ + +V + ++ EA+R KE I +D KA+
Sbjct: 245 KILARRF--VSCYTYDERQTAYLPIDGVCINVSMLTAIIAEAKRLRKELHIAILDLVKAF 302
Query: 61 DSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDPLAP 120
+SV L + G + +I + + G S++ G+ QGDPL+
Sbjct: 303 NSVYHSALIDAITEAGCPPGVVDYIADMYNNVITEMQFEGKCELASIL-AGVYQGDPLSG 361
Query: 121 FLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLVLKG 180
LF + E + R LN + + + ++ + DD L + V+ L+
Sbjct: 362 PLFTLAYE------KALRALNNEGRFDIA--DVRVNASAYSDDGLLL----AMTVIGLQH 409
Query: 181 ML-RYFELLS--GLKVNFSKNR 199
L ++ E L+ GL++N K++
Sbjct: 410 NLDKFGETLAKIGLRINSRKSK 431
>RTJK_DROME (P21328) RNA-directed DNA polymerase from mobile element
jockey (EC 2.7.7.49) (Reverse transcriptase)
Length = 916
Score = 38.1 bits (87), Expect = 0.035
Identities = 54/240 (22%), Positives = 95/240 (39%), Gaps = 25/240 (10%)
Query: 54 VDYKKAYDSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLR 113
+D ++A+D V L Y +RL F + +K+ ++ T V V+G + + G+
Sbjct: 585 LDIQQAFDRVWHPGLLYKAKRL-FPPQLYLVVKSFLEERTFHVSVDGYKSSIKPIAAGVP 643
Query: 114 QGDPLAPFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQ 173
QG L P L+ V A + +D ++ + + DDT + + S
Sbjct: 644 QGSVLGPTLYSVFASDMPTHTPVTE-----------VDEEDVLIATYADDTAVLTK-SKS 691
Query: 174 NVLVLKGMLRYFELL----SGLKVNFSKNRFPGISLGEGTTQCFARMLNCRVMK--EPFT 227
+ G+ Y + V + + ++ T C LN R+++ + +
Sbjct: 692 ILAATSGLQEYLDAFQQWAENWNVRINAEKCANVTFANRTGSCPGVSLNGRLIRHHQAYK 751
Query: 228 YLGIFVGANP--RRRSMWEPLVCKMKKRLQSW---KQKMLSFGGKVCLIKSVLSSIPLFY 282
YLGI + R + K SW + LS G KV + KS+L+ LFY
Sbjct: 752 YLGITLDRKLTFSRHITNIQQAFRTKVARMSWLIAPRNKLSLGCKVNIYKSILAPC-LFY 810
>YMH5_CAEEL (P34472) Hypothetical protein F58A4.5 in chromosome III
Length = 1222
Score = 37.0 bits (84), Expect = 0.079
Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 1/126 (0%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEARRQGKECMIFKVDYKKAY 60
+++ R+ ++ Q F+ R S++ + + + K I D+ KA+
Sbjct: 700 RIICSRIRSEYSHLLSPHQHGFLNFRSCPSSLVRSISLYHSILKNEKSLDILFFDFAKAF 759
Query: 61 DSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESV-MQRGLRQGDPLA 119
D V L + G + W K + T SV +N + + + G+ QG
Sbjct: 760 DKVSHPILLKKLALFGLDKLTCSWFKEFLHLRTFSVKINKFVSSNAYPISSGVPQGSVSG 819
Query: 120 PFLFLV 125
P LF++
Sbjct: 820 PLLFIL 825
>YO84_CAEEL (P34620) Hypothetical protein ZK1236.4 in chromosome III
Length = 364
Score = 35.8 bits (81), Expect = 0.18
Identities = 20/87 (22%), Positives = 40/87 (44%)
Query: 45 QGKECMIFKVDYKKAYDSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTE 104
+G + + +D+ KA+D V D L + + + I W+ + + + V V + +E
Sbjct: 14 EGAQTDVKYLDFSKAFDKVSHDILLDKLTSIKINKHLIRWLDVFLTNRSFKVKVGNTLSE 73
Query: 105 ESVMQRGLRQGDPLAPFLFLVVAEWLS 131
G+ QG ++P LF + +S
Sbjct: 74 PKKTVCGVPQGSVISPVLFGIFVNEIS 100
>LMA2_HUMAN (P24043) Laminin alpha-2 chain precursor (Laminin M chain)
(Merosin heavy chain)
Length = 3110
Score = 30.8 bits (68), Expect = 5.6
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 263 SFGGKVCLIKSVLSSIPLFYLSFFKFPRGIAKECKRIQMDFLWGREVGAGKI 314
S+ V +K+ ++ LFYL KF +A E ++ ++ FLW G G++
Sbjct: 2166 SYNNIVVNVKTAVADNLLFYLGSAKFIDFLAIEMRKGKVSFLWDVGSGVGRV 2217
>ISPE_AQUAE (O67060) 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase (EC 2.7.1.148) (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase)
Length = 268
Score = 30.8 bits (68), Expect = 5.6
Identities = 21/48 (43%), Positives = 30/48 (61%), Gaps = 6/48 (12%)
Query: 167 IGEASTQNVLVLKGMLRYFELLSGLKVNFS----KNRFPGISLGEGTT 210
IG +N LV KG LR FE ++G+++N+S KN PG LG G++
Sbjct: 53 IGIPQEEN-LVYKG-LREFERITGIEINYSIFIQKNIPPGAGLGGGSS 98
>ANK1_HUMAN (P16157) Ankyrin 1 (Erythrocyte ankyrin) (Ankyrin R)
Length = 1880
Score = 30.8 bits (68), Expect = 5.6
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 3 LSKRMGR-----VLGEVIDESQSAFIGGRHMLDSVLVANEVVDEARRQGKECMIFKVDYK 57
++KR+G VL V DE+ + +H + +E++D + +G+E + FK + +
Sbjct: 772 IAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETVDEILDVSEDEGEELISFKAERR 831
Query: 58 KAYD 61
+ D
Sbjct: 832 DSRD 835
>A8B2_HUMAN (P98198) Potential phospholipid-transporting ATPase ID
(EC 3.6.3.1) (ATPase class I type 8B member 2)
Length = 1209
Score = 30.4 bits (67), Expect = 7.4
Identities = 36/155 (23%), Positives = 57/155 (36%), Gaps = 21/155 (13%)
Query: 148 VGMDGMEISLLQFLDDTLFIGEASTQNVLVLKGMLRYFELLSGLKVNFSKNR-------- 199
VG+ G E D F Q +L++ G Y + L F KN
Sbjct: 848 VGISGQEGIQAVLASDYSFSQFKFLQRLLLVHGRWSYLRMCKFLCYFFYKNFAFTMVHFW 907
Query: 200 ---FPGISLGEGTTQCFARMLNCRVMKEPFTYLGIFVGANPRRRSMWEPLVCKMKKRLQS 256
F G S Q F + N P +G+F P +RSM P +L
Sbjct: 908 FGFFCGFSAQTVYDQYFITLYNIVYTSLPVLAMGVFDQDVPEQRSMEYP-------KLYE 960
Query: 257 WKQKMLSFGGK---VCLIKSVLSSIPLFYLSFFKF 288
Q L F + +C+ + + +S+ +F++ + F
Sbjct: 961 PGQLNLLFNKREFFICIAQGIYTSVLMFFIPYGVF 995
>SPEB_SCHPO (Q10088) Putative agmatinase 1 precursor (EC 3.5.3.11)
(Agmatine ureohydrolase) (AUH)
Length = 394
Score = 30.0 bits (66), Expect = 9.6
Identities = 21/68 (30%), Positives = 35/68 (50%), Gaps = 1/68 (1%)
Query: 131 SGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLVLKGMLR-YFELLS 189
SG+ +RRLNL+ GY V M+ + + D I S N + +K + +FELL+
Sbjct: 98 SGIREGSRRLNLYGGYNVPMETNPFNNWAKIVDCGDIPLTSYDNAVAIKQIENGHFELLT 157
Query: 190 GLKVNFSK 197
++S+
Sbjct: 158 RKPTSYSE 165
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.325 0.140 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,020,646
Number of Sequences: 164201
Number of extensions: 1775361
Number of successful extensions: 4340
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 4312
Number of HSP's gapped (non-prelim): 24
length of query: 366
length of database: 59,974,054
effective HSP length: 112
effective length of query: 254
effective length of database: 41,583,542
effective search space: 10562219668
effective search space used: 10562219668
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 66 (30.0 bits)
Lotus: description of TM0134.24