BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0134.20
(1583 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 510 e-143
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 357 1e-97
YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein 158 1e-37
M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810... 145 1e-33
YJZ9_YEAST (P47100) Transposon Ty1 protein B 104 2e-21
YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B) 103 5e-21
YMD9_YEAST (Q03434) Transposon Ty1 protein B 101 1e-20
YMT5_YEAST (Q04214) Transposon Ty1 protein B 100 2e-20
YME4_YEAST (Q04711) Transposon Ty1 protein B 100 2e-20
YJZ7_YEAST (P47098) Transposon Ty1 protein B 100 5e-20
YMU0_YEAST (Q04670) Transposon Ty1 protein B 99 1e-19
YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein 95 2e-18
M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820... 92 1e-17
M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240... 70 6e-11
M710_ARATH (P92512) Hypothetical mitochondrial protein AtMg00710... 54 3e-06
POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.2... 50 5e-05
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 50 5e-05
POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.2... 48 2e-04
POL_MLVAK (P03357) Pol polyprotein [Contains: Reverse transcript... 47 5e-04
POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse transcript... 47 5e-04
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 510 bits (1313), Expect = e-143
Identities = 341/1054 (32%), Positives = 543/1054 (51%), Gaps = 68/1054 (6%)
Query: 572 WYLDSGCSRHMTGERRMFQELKLKPGGEVGFGGNEKGKIVGSGTIGVD-NSPC---IDNV 627
W +D+ S H T R +F G V G KI G G I + N C + +V
Sbjct: 294 WVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDV 353
Query: 628 LLVDGLNHNLLSISQLADKGYDIIFNQKSCRAVS*IDGS-VLFNSKRRNNTYKIR--LSE 684
V L NL+S L GY+ F + R GS V+ R Y+ + +
Sbjct: 354 RHVPDLRMNLISGIALDRDGYESYFANQKWRLTK---GSLVIAKGVARGTLYRTNAEICQ 410
Query: 685 LETQKVKCLLSVNEEQWVWHRRLGHASMSKLDLVRGLPTLKFSSDAL---CEACQKGKFT 741
E + +SV+ +WH+R+GH S L ++ + ++ C+ C GK
Sbjct: 411 GELNAAQDEISVD----LWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQH 466
Query: 742 KVPFKAKNVVSTSRPLELLHIDLFGLVKTESIGGKRYGMVIVDDYSCWTWVKFLSRKDES 801
+V F+ + + L+L++ D+ G ++ ES+GG +Y + +DD S WV L KD+
Sbjct: 467 RVSFQTSSERKLNI-LDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQV 525
Query: 802 HSVFSTFIAQVQNEKGCRIMRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTHQQNGVI 861
VF F A V+ E G ++ R+RSD+GGE+ + +FE S+GI H+ + P T Q NGV
Sbjct: 526 FQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVA 585
Query: 862 ERKNRTLQEMARTMLQETDMAKHFWAEAVNTTCYIQNRISIRPILNKTPYELWKKIKPNF 921
ER NRT+ E R+ML+ + K FW EAV T CY+ NR P+ + P +W + ++
Sbjct: 586 ERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSY 645
Query: 922 SYFHPFGCVCYALNNKDRLHKFDSKSSKCLLLGYSDRSKGFRIYNTDAKTIEECIHVRFD 981
S+ FGC +A K++ K D KS C+ +GY D G+R+++ K + V F
Sbjct: 646 SHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFR 705
Query: 982 D---KLDSDQSKLVEK-FADMSINVSDKGKAPEEAEPEEDSLEEVGLSDSQPQKKSRIVA 1037
+ + +D S+ V+ + + P AE D + E G QP + V
Sbjct: 706 ESEVRTAADMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQG---EQPGE----VI 758
Query: 1038 SHPKELILGIKD-----------EPV*TRSAFRPSEETLLSLKGLVSLI----EPKSIDE 1082
++L G+++ +P+ R + RP E+ LI EP+S+ E
Sbjct: 759 EQGEQLDEGVEEVEHPTQGEEQHQPL--RRSERPRVESRRYPSTEYVLISDDREPESLKE 816
Query: 1083 ALQ--DKDWIL-TMEEELNQFSKNDVWNLVKKPQGVHILGTKWVFRNKLNEKGDVVRNKA 1139
L +K+ ++ M+EE+ KN + LV+ P+G L KWVF+ K + +VR KA
Sbjct: 817 VLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKA 876
Query: 1140 RLVAQGNSQQEGIDYTETFALVARLEAIRLLISFSVNHNIIVHQMDVKSAFLNGYISEEV 1199
RLV +G Q++GID+ E F+ V ++ +IR ++S + + ++ V Q+DVK+AFL+G + EE+
Sbjct: 877 RLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEI 936
Query: 1200 YVHQPPGFEDEKNPDHVFKLKKSLYGLKQAPRAWYGRLSSFLLDNEFVRGKVDTTLFCKT 1259
Y+ QP GFE V KL KSLYGLKQAPR WY + SF+ +++ D ++ K
Sbjct: 937 YMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKR 996
Query: 1260 Y-KDDI*IKQIYVDDIIFGSANPSLCKEFSEMMQAELEMSTMGELKYFLGIQV--DQKPE 1316
+ +++ I +YVDD++ + L + + +M +G + LG+++ ++
Sbjct: 997 FSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSR 1056
Query: 1317 ATYIHQSKYTKELLKKFNMKKSTIAKTP----------MHPTCILEKEDVSGKVCQKIYR 1366
++ Q KY + +L++FNMK + TP M PT + EK G + + Y
Sbjct: 1057 KLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEK----GNMAKVPYS 1112
Query: 1367 GMIGSLLY-LTASRPDILFSVHLCARFQSDPRETHLTAVKRIRRYLKGTTNLGLMYKKTS 1425
+GSL+Y + +RPDI +V + +RF +P + H AVK I RYL+GTT L + S
Sbjct: 1113 SAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCF-GGS 1171
Query: 1426 EYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSIIALSLAEAEYISAAICS 1485
+ L GY DAD AGD RKS++G +SW SK Q +ALS EAEYI+A
Sbjct: 1172 DPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETG 1231
Query: 1486 TQMLWTKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYV*KGV 1545
+M+W K L++ + + +YCD+ +AI LSKN + H+R KHI+V+YH+IR+ V
Sbjct: 1232 KEMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDES 1291
Query: 1546 LLLKFVDTDHQWANIFTKPLADDRFNFILKNLNM 1579
L + + T+ A++ TK + ++F + + M
Sbjct: 1292 LKVLKISTNENPADMLTKVVPRNKFELCKELVGM 1325
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 357 bits (916), Expect = 1e-97
Identities = 230/662 (34%), Positives = 362/662 (53%), Gaps = 46/662 (6%)
Query: 942 KFDSKSSKC---LLLGYSDRSKGFRIYNTDAKTIE--------ECIHVRF-DDKLDSDQS 989
+F ++S +C L S S+ N K I+ EC +++F D +S++
Sbjct: 743 EFPNESKECDNIQFLKDSKESENKNFPNDSRKIIQTEFPNESKECDNIQFLKDSKESNKY 802
Query: 990 KLVE---KFADMSINVSDKGKAPEEAEPEE--DSLEEVGLSDSQPQKKSRIVASHPKELI 1044
L E + D +N S P E+ E + L+E+G+ + P K I I
Sbjct: 803 FLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDN--PTKNDGIE-------I 853
Query: 1045 LGIKDEPV*TRSAFRPSEE------TLLSLKGLVSLIEPKSIDEALQDKD---WILTMEE 1095
+ + E + T+ +EE +L+ + + + P S DE D W +
Sbjct: 854 INRRSERLKTKPQISYNEEDNSLNKVVLNAHTIFNDV-PNSFDEIQYRDDKSSWEEAINT 912
Query: 1096 ELNQFSKNDVWNLVKKPQGVHILGTKWVFRNKLNEKGDVVRNKARLVAQGNSQQEGIDYT 1155
ELN N+ W + K+P+ +I+ ++WVF K NE G+ +R KARLVA+G +Q+ IDY
Sbjct: 913 ELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYE 972
Query: 1156 ETFALVARLEAIRLLISFSVNHNIIVHQMDVKSAFLNGYISEEVYVHQPPGFEDEKNPDH 1215
ETFA VAR+ + R ++S + +N+ VHQMDVK+AFLNG + EE+Y+ P G N D+
Sbjct: 973 ETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGI--SCNSDN 1030
Query: 1216 VFKLKKSLYGLKQAPRAWYGRLSSFLLDNEFVRGKVDTTLFC--KTYKDDI*IKQIYVDD 1273
V KL K++YGLKQA R W+ L + EFV VD ++ K ++ +YVDD
Sbjct: 1031 VCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDD 1090
Query: 1274 IIFGSANPSLCKEFSEMMQAELEMSTMGELKYFLGIQVDQKPEATYIHQSKYTKELLKKF 1333
++ + + + F + + M+ + E+K+F+GI+++ + + Y+ QS Y K++L KF
Sbjct: 1091 VVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKF 1150
Query: 1334 NMKKSTIAKTPMHPTCILEKEDVSGKVCQKIYRGMIGSLLY-LTASRPDILFSVHLCARF 1392
NM+ TP+ P+ I + S + C R +IG L+Y + +RPD+ +V++ +R+
Sbjct: 1151 NMENCNAVSTPL-PSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRY 1209
Query: 1393 QSDPRETHLTAVKRIRRYLKGTTNLGLMYKK--TSEYKLSGYCDADYAGDRTERKSTSGN 1450
S +KR+ RYLKGT ++ L++KK E K+ GY D+D+AG +RKST+G
Sbjct: 1210 SSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGY 1269
Query: 1451 C-QFLGSNLVSWASKRQSIIALSLAEAEYISAAICSTQMLWTKHQLEDYQI-LESNIPIY 1508
+ NL+ W +KRQ+ +A S EAEY++ + LW K L I LE+ I IY
Sbjct: 1270 LFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIY 1329
Query: 1509 CDNTAAISLSKNPILHSRAKHIEVKYHFIRDYV*KGVLLLKFVDTDHQWANIFTKPLADD 1568
DN IS++ NP H RAKHI++KYHF R+ V V+ L+++ T++Q A+IFTKPL
Sbjct: 1330 EDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAA 1389
Query: 1569 RF 1570
RF
Sbjct: 1390 RF 1391
Score = 165 bits (417), Expect = 1e-39
Identities = 120/435 (27%), Positives = 214/435 (48%), Gaps = 38/435 (8%)
Query: 554 IRLSILQISLIAPLKHQSWYLDSGCSRHMTGERRMFQE-LKLKPGGEVGFGGNEKGKIVG 612
I + +++ + + + + LDSG S H+ + ++ + +++ P ++ ++G+ +
Sbjct: 271 IAFMVKEVNNTSVMDNCGFVLDSGASDHLINDESLYTDSVEVVPPLKIAVA--KQGEFIY 328
Query: 613 SGTIGV-----DNSPCIDNVLLVDGLNHNLLSISQLADKGYDIIFNQKSCRAVS*IDGSV 667
+ G+ D+ +++VL NL+S+ +L + G I F+ KS +S V
Sbjct: 329 ATKRGIVRLRNDHEITLEDVLFCKEAAGNLMSVKRLQEAGMSIEFD-KSGVTISKNGLMV 387
Query: 668 LFNSKRRNNTYKIRLSELETQKVKCLLSVNEEQW----VWHRRLGHASMSKLDLVRG--- 720
+ NS NN I S+N + +WH R GH S KL ++
Sbjct: 388 VKNSGMLNNVPVINFQAY---------SINAKHKNNFRLWHERFGHISDGKLLEIKRKNM 438
Query: 721 ------LPTLKFSSDALCEACQKGKFTKVPFKA-KNVVSTSRPLELLHIDLFGLVKTESI 773
L L+ S + +CE C GK ++PFK K+ RPL ++H D+ G + ++
Sbjct: 439 FSDQSLLNNLELSCE-ICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTL 497
Query: 774 GGKRYGMVIVDDYSCWTWVKFLSRKDESHSVFSTFIAQVQNEKGCRIMRVRSDHGGEFEN 833
K Y ++ VD ++ + + K + S+F F+A+ + +++ + D+G E+ +
Sbjct: 498 DDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLS 557
Query: 834 DKFESLFDSYGIAHDFSCPRTHQQNGVIERKNRTLQEMARTMLQETDMAKHFWAEAVNTT 893
++ GI++ + P T Q NGV ER RT+ E ARTM+ + K FW EAV T
Sbjct: 558 NEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTA 617
Query: 894 CYIQNRISIRPIL--NKTPYELWKKIKPNFSYFHPFGCVCYALNNKDRLHKFDSKSSKCL 951
Y+ NRI R ++ +KTPYE+W KP + FG Y ++ K++ KFD KS K +
Sbjct: 618 TYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGATVY-VHIKNKQGKFDDKSFKSI 676
Query: 952 LLGYSDRSKGFRIYN 966
+GY GF++++
Sbjct: 677 FVGY--EPNGFKLWD 689
>YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein
Length = 308
Score = 158 bits (399), Expect = 1e-37
Identities = 96/309 (31%), Positives = 162/309 (52%), Gaps = 17/309 (5%)
Query: 1184 MDVKSAFLNGYISEEVYVHQPPGFEDEKNPDHVFKLKKSLYGLKQAPRAWYGRLSSFLLD 1243
MDV +AFLN + E +YV QPPGF +E+NPD+V++L +YGLKQAP W +++ L
Sbjct: 1 MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60
Query: 1244 NEFVRGKVDTTLFCKTYKDDI*IKQIYVDDIIFGSANPSLCKEFSEMMQAELEMSTMGEL 1303
F R + + L+ ++ D +YVDD++ + +P + + + M +G++
Sbjct: 61 IGFCRHEGEHGLYFRSTSDGPIYIGVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120
Query: 1304 KYFLGIQVDQKPEA-------TYIHQSKYTKELLKKFNMKKSTIAKT-PMHPTCILEKED 1355
FLG+ + Q YI ++ E + F + ++ + + P+ T +D
Sbjct: 121 DKFLGLNIHQSTNGDITLSLQDYIAKAASESE-INTFKLTQTPLCNSKPLFETTSPHLKD 179
Query: 1356 VSGKVCQKIYRGMIGSLLY-LTASRPDILFSVHLCARFQSDPRETHLTAVKRIRRYLKGT 1414
++ Y+ ++G LL+ RPDI + V L +RF +PR HL + +R+ RYL T
Sbjct: 180 ITP------YQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTT 233
Query: 1415 TNLGLMYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKR-QSIIALSL 1473
++ L Y+ S+ L+ YCDA + ST G L V+W+SK+ + +I +
Sbjct: 234 RSMCLKYRSGSQVALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPS 293
Query: 1474 AEAEYISAA 1482
EAEYI+A+
Sbjct: 294 TEAEYITAS 302
>M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810
(ORF240b)
Length = 240
Score = 145 bits (365), Expect = 1e-33
Identities = 71/223 (31%), Positives = 124/223 (54%), Gaps = 1/223 (0%)
Query: 1269 IYVDDIIFGSANPSLCKEFSEMMQAELEMSTMGELKYFLGIQVDQKPEATYIHQSKYTKE 1328
+YVDDI+ ++ +L + + M +G + YFLGIQ+ P ++ Q+KY ++
Sbjct: 5 LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64
Query: 1329 LLKKFNMKKSTIAKTPMHPTCILEKEDVSGKVCQKIYRGMIGSLLYLTASRPDILFSVHL 1388
+L M TP+ P + + +R ++G+L YLT +RPDI ++V++
Sbjct: 65 ILNNAGMLDCKPMSTPL-PLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNI 123
Query: 1389 CARFQSDPRETHLTAVKRIRRYLKGTTNLGLMYKKTSEYKLSGYCDADYAGDRTERKSTS 1448
+ +P +KR+ RY+KGT GL K S+ + +CD+D+AG + R+ST+
Sbjct: 124 VCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTT 183
Query: 1449 GNCQFLGSNLVSWASKRQSIIALSLAEAEYISAAICSTQMLWT 1491
G C FLG N++SW++KRQ ++ S E EY + A+ + ++ W+
Sbjct: 184 GFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTWS 226
>YJZ9_YEAST (P47100) Transposon Ty1 protein B
Length = 1755
Score = 104 bits (259), Expect = 2e-21
Identities = 129/522 (24%), Positives = 230/522 (43%), Gaps = 51/522 (9%)
Query: 1085 QDKDWILTMEEELNQFSKNDVWNLV-----KKPQGVHILGTKWVFRNKLNEKGDVVRNKA 1139
+ + +I +E+NQ K W+ K+ ++ + ++F N+K D +KA
Sbjct: 1246 EKEKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFIF----NKKRDGT-HKA 1300
Query: 1140 RLVAQGNSQQEGIDYTETFALVARLEAIRLLISFSVNHNIIVHQMDVKSAFLNGYISEEV 1199
R VA+G+ Q + + A+ +S ++++N + Q+D+ SA+L I EE+
Sbjct: 1301 RFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEEL 1360
Query: 1200 YVHQPPGFEDEKNPDHVFKLKKSLYGLKQAPRAWYGRLSSFLLDN---EFVRGKVDTTLF 1256
Y+ PP D + +LKKSLYGLKQ+ WY + S+L+ E VRG +
Sbjct: 1361 YIRPPPHLGMN---DKLIRLKKSLYGLKQSGANWYETIKSYLIQQCGMEEVRG------W 1411
Query: 1257 CKTYKDDI*IKQIYVDDIIFGSANPSLCKEFSE--MMQAELEMSTMG----ELKY-FLGI 1309
+K+ ++VDD++ S N + K E MQ + ++ +G E++Y LG+
Sbjct: 1412 SCVFKNSQVTICLFVDDMVLFSKNLNSNKRIIEKLKMQYDTKIINLGESDEEIQYDILGL 1471
Query: 1310 QVD-QKPEATYIHQSKYTKELLKKFNM---KKSTIAKTPMHPTCI-------LEKEDVSG 1358
++ Q+ + + E + K N+ K P P LE++D
Sbjct: 1472 EIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQELELEEDDYKM 1531
Query: 1359 KVCQKIYRGMIGSLLYLTAS-RPDILFSVHLCARFQSDPRETHLTAVKRIRRYLKGTTNL 1417
KV + + +IG Y+ R D+L+ ++ A+ P + L + +++ T +
Sbjct: 1532 KVHE--MQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRDK 1589
Query: 1418 GLMYKKTSEY----KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSIIALSL 1473
L++ K+ KL DA Y G++ KS GN L ++ S + S+ S
Sbjct: 1590 QLIWHKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTST 1648
Query: 1474 AEAEY--ISAAICSTQMLWTKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIE 1531
EAE IS ++ L Q D + + + +T +I +S N R +
Sbjct: 1649 TEAEIHAISESVPLLNNLSYLIQELDKKPITKGLLTDSKSTISIIISNNE-EKFRNRFFG 1707
Query: 1532 VKYHFIRDYV*KGVLLLKFVDTDHQWANIFTKPLADDRFNFI 1573
K +RD V L + +++T A++ TKPL F +
Sbjct: 1708 TKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLL 1749
Score = 82.4 bits (202), Expect = 9e-15
Identities = 108/498 (21%), Positives = 186/498 (36%), Gaps = 46/498 (9%)
Query: 574 LDSGCSRHMTGERRMFQELKLKPGGEVGFGGNEKGKIVGSGTIGV---DNSPCIDNVLLV 630
LDSG SR + P V I G + DN+ VL
Sbjct: 460 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 519
Query: 631 DGLNHNLLSISQLADKGYDIIFNQKSCRAVS*IDGSVLFNSKRRNNTYKI--------RL 682
+ ++LLS+++LA F + + DG+VL + + Y + +
Sbjct: 520 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLLPSNI 576
Query: 683 SELETQKVKCLLSVNEEQWVW-HRRLGHASMSKLDLVRGLPTLKFSS----------DAL 731
S V S + + + HR L HA+ + T+ + + D
Sbjct: 577 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQ 636
Query: 732 CEACQKGKFTK---VPFKAKNVVSTSRPLELLHIDLFGLVKTESIGGKRYGMVIVDDYSC 788
C C GK TK + ++ P + LH D+FG V Y + D+ +
Sbjct: 637 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 696
Query: 789 WTWVKFLS--RKDESHSVFSTFIAQVQNEKGCRIMRVRSDHGGEFENDKFESLFDSYGIA 846
+ WV L R+D VF+T +A ++N+ ++ ++ D G E+ N + GI
Sbjct: 697 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 756
Query: 847 HDFSCPRTHQQNGVIERKNRTLQEMARTMLQETDMAKHFWAEAVNTTCYIQNRISIRPIL 906
++ + +GV ER NRTL + RT LQ + + H W A+ + ++N ++ P
Sbjct: 757 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLA-SPKS 815
Query: 907 NKTPYELWKKIKPNFSYFHPFGCVCYALNNKDRLHKFDSKSSKCLLLGYSDRSKGFRIYN 966
K+ + + S PFG +N+ + K + L S S G+ IY
Sbjct: 816 KKSARQHAGLAGLDISTLLPFG-QPVIVNDHNPNSKIHPRGIPGYALHPSRNSYGYIIYL 874
Query: 967 TD-AKTIEECIHVRFDDK-------------LDSDQSKLVEKFADMSINVSDKGKAPEEA 1012
KT++ +V K D D ++L + + +
Sbjct: 875 PSLKKTVDTTNYVILQGKESRLDQFNYDALTFDEDLNRLTASYQSFIASNEIQQSDDLNI 934
Query: 1013 EPEEDSLEEVGLSDSQPQ 1030
E + D ++ L QP+
Sbjct: 935 ESDHDFQSDIELHPEQPR 952
>YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B)
Length = 1770
Score = 103 bits (256), Expect = 5e-21
Identities = 126/553 (22%), Positives = 253/553 (44%), Gaps = 63/553 (11%)
Query: 1065 LLSLKGLVSLIEPKSI---DEAL------QDKD-WILTMEEELNQFSKNDVWNLVK---- 1110
+ ++KG+ S+ ++ DEA+ ++KD ++ +E++Q K + W+ K
Sbjct: 1231 IAAIKGVKSIKPVRTTLRYDEAITYNKDNKEKDRYVEAYHKEISQLLKMNTWDTNKYYDR 1290
Query: 1111 ---KPQGVHILGTKWVFRNKLNEKGDVVRNKARLVAQGNSQQEGIDYTETFALVARLEAI 1167
P+ V + + ++F N+K D +KAR VA+G+ Q ++ + A+
Sbjct: 1291 NDIDPKKV--INSMFIF----NKKRDGT-HKARFVARGDIQHPDTYDSDMQSNTVHHYAL 1343
Query: 1168 RLLISFSVNHNIIVHQMDVKSAFLNGYISEEVYVHQPP--GFEDEKNPDHVFKLKKSLYG 1225
+S +++++ + Q+D+ SA+L I EE+Y+ PP G D+ + +L+KSLYG
Sbjct: 1344 MTSLSIALDNDYYITQLDISSAYLYADIKEELYIRPPPHLGLNDK-----LLRLRKSLYG 1398
Query: 1226 LKQAPRAWYGRLSSFLL---DNEFVRGKVDTTLFCKTYKDDI*IKQIYVDDIIFGSANPS 1282
LKQ+ WY + S+L+ D + VRG + +K+ ++VDD+I S + +
Sbjct: 1399 LKQSGANWYETIKSYLINCCDMQEVRG------WSCVFKNSQVTICLFVDDMILFSKDLN 1452
Query: 1283 LCKEFSEMMQAELEMSTM------GELKY-FLGIQVD-QKPEATYIHQSKYTKELLKKFN 1334
K+ ++ + + + E++Y LG+++ Q+ + + K E L K N
Sbjct: 1453 ANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRSKYMKLGMEKSLTEKLPKLN 1512
Query: 1335 M---KKSTIAKTPMHPTCILEKEDV---SGKVCQKIY--RGMIGSLLYLTAS-RPDILFS 1385
+ K + P P ++++++ + +K++ + +IG Y+ R D+L+
Sbjct: 1513 VPLNPKGKKLRAPGQPGHYIDQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYY 1572
Query: 1386 VHLCARFQSDPRETHLTAVKRIRRYLKGTTNLGLMYKKTS----EYKLSGYCDADYAGDR 1441
++ A+ P L + +++ T + L++ K + KL DA Y G++
Sbjct: 1573 INTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTKPDNKLVAISDASY-GNQ 1631
Query: 1442 TERKSTSGNCQFLGSNLVSWASKRQSIIALSLAEAEYISAAICSTQMLWTKHQLEDYQIL 1501
KS GN L ++ S + S+ S EAE + + + H +++
Sbjct: 1632 PYYKSQIGNIFLLNGKVIGGKSTKASLTCTSTTEAEIHAVSEAIPLLNNLSHLVQELNKK 1691
Query: 1502 ESNIPIYCDNTAAISLSKNPILHS-RAKHIEVKYHFIRDYV*KGVLLLKFVDTDHQWANI 1560
+ D+ + IS+ K+ R + K +RD V L + +++T A++
Sbjct: 1692 PIIKGLLTDSRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADV 1751
Query: 1561 FTKPLADDRFNFI 1573
TKPL F +
Sbjct: 1752 MTKPLPIKTFKLL 1764
Score = 98.2 bits (243), Expect = 2e-19
Identities = 105/386 (27%), Positives = 168/386 (43%), Gaps = 42/386 (10%)
Query: 635 HNLLSISQLADKGYDIIFNQKSCRAVS*IDGSVLFNSKRRNNTYKI--------RLSELE 686
++LLS+S+LA++ F + + DG+VL + + Y + +S+L
Sbjct: 520 YDLLSLSELANQNITACFTRNTLERS---DGTVLAPIVKHGDFYWLSKKYLIPSHISKLT 576
Query: 687 TQKVKCLLSVNEEQW-VWHRRLGHASMSKLD--LVRGLPTLKFSSDA--------LCEAC 735
V SVN+ + + HR LGHA+ + L + T SD C C
Sbjct: 577 INNVNKSKSVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCPDC 636
Query: 736 QKGKFTK---VPFKAKNVVSTSRPLELLHIDLFGLVKTESIGGKRYGMVIVDDYSCWTWV 792
GK TK V + P + LH D+FG V Y + D+ + + WV
Sbjct: 637 LIGKSTKHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWV 696
Query: 793 KFL-SRKDESH-SVFSTFIAQVQNEKGCRIMRVRSDHGGEFENDKFESLFDSYGIAHDFS 850
L R++ES +VF++ +A ++N+ R++ ++ D G E+ N F + GI ++
Sbjct: 697 YPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYT 756
Query: 851 CPRTHQQNGVIERKNRTLQEMARTMLQETDMAKHFWAEAVNTTCYIQNRISIRPILNKTP 910
+ +GV ER NRTL RT+L + + H W AV + I+N + + P +K+
Sbjct: 757 TTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSL-VSPKNDKSA 815
Query: 911 YELWKKIKPNFSYFHPFGCVCYALNNKDRLHKFDSKSSKCLLLGY----SDRSKGFRIYN 966
+ + + PFG N H DSK + GY S S G+ IY
Sbjct: 816 RQHAGLAGLDITTILPFGQPVIVNN-----HNPDSKIHPRGIPGYALHPSRNSYGYIIYL 870
Query: 967 TD-AKTIEECIHVRFDDKLDSDQSKL 991
KT++ +V DK QSKL
Sbjct: 871 PSLKKTVDTTNYVILQDK----QSKL 892
>YMD9_YEAST (Q03434) Transposon Ty1 protein B
Length = 1328
Score = 101 bits (252), Expect = 1e-20
Identities = 120/522 (22%), Positives = 233/522 (43%), Gaps = 51/522 (9%)
Query: 1085 QDKDWILTMEEELNQFSKNDVWNLV-----KKPQGVHILGTKWVFRNKLNEKGDVVRNKA 1139
+ + +I +E+NQ K W+ K+ ++ + ++F N+K D +KA
Sbjct: 819 EKEKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFIF----NKKRDGT-HKA 873
Query: 1140 RLVAQGNSQQEGIDYTETFALVARLEAIRLLISFSVNHNIIVHQMDVKSAFLNGYISEEV 1199
R VA+G+ Q + + A+ +S ++++N + Q+D+ SA+L I EE+
Sbjct: 874 RFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEEL 933
Query: 1200 YVHQPPGFEDEKNPDHVFKLKKSLYGLKQAPRAWYGRLSSFLLDN---EFVRGKVDTTLF 1256
Y+ PP D + +LKKSLYGLKQ+ WY + S+L+ E VRG +
Sbjct: 934 YIRPPPHLGMN---DKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRG------W 984
Query: 1257 CKTYKDDI*IKQIYVDDIIFGSANPSLCKEFSEMMQAELEMSTM------GELKY-FLGI 1309
+K+ ++VDD+I S + + K+ ++ + + + E++Y LG+
Sbjct: 985 SCVFKNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGL 1044
Query: 1310 QVD-QKPEATYIHQSKYTKELLKKFNM---KKSTIAKTPMHPTCILEKEDV---SGKVCQ 1362
++ Q+ + + E + K N+ K P P ++++++ + +
Sbjct: 1045 EIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKE 1104
Query: 1363 KIY--RGMIGSLLYLTAS-RPDILFSVHLCARFQSDPRETHLTAVKRIRRYLKGTTNLGL 1419
K++ + +IG Y+ R D+L+ ++ A+ P L + +++ T + L
Sbjct: 1105 KVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQL 1164
Query: 1420 MYKKTS----EYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSIIALSLAE 1475
++ K + KL DA Y G++ KS GN L ++ S + S+ S E
Sbjct: 1165 IWHKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTE 1223
Query: 1476 AEY--ISAAI-CSTQMLWTKHQLEDYQILESNIPIYCDNTAAISLSKNPILHS-RAKHIE 1531
AE IS ++ + + +L I++ + D+ + IS+ K+ R +
Sbjct: 1224 AEIHAISESVPLLNNLSYLIQELNKKPIIKG---LLTDSRSTISIIKSTNEEKFRNRFFG 1280
Query: 1532 VKYHFIRDYV*KGVLLLKFVDTDHQWANIFTKPLADDRFNFI 1573
K +RD V L + +++T A++ TKPL F +
Sbjct: 1281 TKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTFKLL 1322
Score = 82.4 bits (202), Expect = 9e-15
Identities = 108/498 (21%), Positives = 186/498 (36%), Gaps = 46/498 (9%)
Query: 574 LDSGCSRHMTGERRMFQELKLKPGGEVGFGGNEKGKIVGSGTIGV---DNSPCIDNVLLV 630
LDSG SR + P V I G + DN+ VL
Sbjct: 33 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 92
Query: 631 DGLNHNLLSISQLADKGYDIIFNQKSCRAVS*IDGSVLFNSKRRNNTYKI--------RL 682
+ ++LLS+++LA F + + DG+VL + + Y + +
Sbjct: 93 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLLPSNI 149
Query: 683 SELETQKVKCLLSVNEEQWVW-HRRLGHASMSKLDLVRGLPTLKFSS----------DAL 731
S V S + + + HR L HA+ + T+ + + D
Sbjct: 150 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDRSSAIDYQ 209
Query: 732 CEACQKGKFTK---VPFKAKNVVSTSRPLELLHIDLFGLVKTESIGGKRYGMVIVDDYSC 788
C C GK TK + ++ P + LH D+FG V Y + D+ +
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 269
Query: 789 WTWVKFLS--RKDESHSVFSTFIAQVQNEKGCRIMRVRSDHGGEFENDKFESLFDSYGIA 846
+ WV L R+D VF+T +A ++N+ ++ ++ D G E+ N + GI
Sbjct: 270 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 329
Query: 847 HDFSCPRTHQQNGVIERKNRTLQEMARTMLQETDMAKHFWAEAVNTTCYIQNRISIRPIL 906
++ + +GV ER NRTL + RT LQ + + H W A+ + ++N ++ P
Sbjct: 330 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLA-SPKS 388
Query: 907 NKTPYELWKKIKPNFSYFHPFGCVCYALNNKDRLHKFDSKSSKCLLLGYSDRSKGFRIYN 966
K+ + + S PFG +N+ + K + L S S G+ IY
Sbjct: 389 KKSARQHAGLAGLDISTLLPFG-QPVIVNDHNPNSKIHPRGIPGYALHPSRNSYGYIIYL 447
Query: 967 TD-AKTIEECIHVRFDDK-------------LDSDQSKLVEKFADMSINVSDKGKAPEEA 1012
KT++ +V K D D ++L + + +
Sbjct: 448 PSLKKTVDTTNYVILQGKESRLDQFNYDALTFDEDLNRLTASYQSFIASNEIQQSDDLNI 507
Query: 1013 EPEEDSLEEVGLSDSQPQ 1030
E + D ++ L QP+
Sbjct: 508 ESDHDFQSDIELHPEQPR 525
>YMT5_YEAST (Q04214) Transposon Ty1 protein B
Length = 1328
Score = 100 bits (250), Expect = 2e-20
Identities = 125/522 (23%), Positives = 228/522 (42%), Gaps = 51/522 (9%)
Query: 1085 QDKDWILTMEEELNQFSKNDVWNLVK-----KPQGVHILGTKWVFRNKLNEKGDVVRNKA 1139
+ + +I +E+NQ K W+ K + ++ + ++F K + +KA
Sbjct: 819 EKEKYIEAYHKEVNQLLKMKTWDTDKYYDRKEIDPKRVINSMFIFNRKRDGT-----HKA 873
Query: 1140 RLVAQGNSQQEGIDYTETFALVARLEAIRLLISFSVNHNIIVHQMDVKSAFLNGYISEEV 1199
R VA+G+ Q + + A+ +S ++++N + Q+D+ SA+L I EE+
Sbjct: 874 RFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEEL 933
Query: 1200 YVHQPPGFEDEKNPDHVFKLKKSLYGLKQAPRAWYGRLSSFLLDN---EFVRGKVDTTLF 1256
Y+ PP D + +LKKSLYGLKQ+ WY + S+L+ E VRG +
Sbjct: 934 YIRPPPHLGMN---DKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRG------W 984
Query: 1257 CKTYKDDI*IKQIYVDDIIFGSANPSLCKEFSE--MMQAELEMSTMG----ELKY-FLGI 1309
+++ ++VDD++ S N + K + MQ + ++ +G E++Y LG+
Sbjct: 985 SCVFENSQVTICLFVDDMVLFSKNLNSNKRIIDKLKMQYDTKIINLGESDEEIQYDILGL 1044
Query: 1310 QVD-QKPEATYIHQSKYTKELLKKFNM---KKSTIAKTPMHPTCI-------LEKEDVSG 1358
++ Q+ + + E + K N+ K P P LE++D
Sbjct: 1045 EIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQELELEEDDYKM 1104
Query: 1359 KVCQKIYRGMIGSLLYLTAS-RPDILFSVHLCARFQSDPRETHLTAVKRIRRYLKGTTNL 1417
KV + + +IG Y+ R D+L+ ++ A+ P + L + +++ T +
Sbjct: 1105 KVHE--MQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRDK 1162
Query: 1418 GLMYKKTSEY----KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSIIALSL 1473
L++ K+ KL DA Y G++ KS GN L ++ S + S+ S
Sbjct: 1163 QLIWHKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTST 1221
Query: 1474 AEAEY--ISAAICSTQMLWTKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIE 1531
EAE IS ++ L Q D + + + +T +I +S N R +
Sbjct: 1222 TEAEIHAISESVPLLNNLSYLIQELDKKPITKGLLTDSKSTISIIISNNE-EKFRNRFFG 1280
Query: 1532 VKYHFIRDYV*KGVLLLKFVDTDHQWANIFTKPLADDRFNFI 1573
K +RD V L + +++T A++ TKPL F +
Sbjct: 1281 TKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLL 1322
Score = 82.0 bits (201), Expect = 1e-14
Identities = 82/355 (23%), Positives = 140/355 (39%), Gaps = 30/355 (8%)
Query: 574 LDSGCSRHMTGERRMFQELKLKPGGEVGFGGNEKGKIVGSGTIGV---DNSPCIDNVLLV 630
LDSG SR + P V I G + DN+ VL
Sbjct: 33 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 92
Query: 631 DGLNHNLLSISQLADKGYDIIFNQKSCRAVS*IDGSVLFNSKRRNNTYKI--------RL 682
+ ++LLS+++LA F + + DG+VL + + Y + +
Sbjct: 93 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLLPSNI 149
Query: 683 SELETQKVKCLLSVNEEQWVW-HRRLGHASMSKLDLVRGLPTLKFSS----------DAL 731
S V S + + + HR L HA+ + T+ + + D
Sbjct: 150 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQ 209
Query: 732 CEACQKGKFTK---VPFKAKNVVSTSRPLELLHIDLFGLVKTESIGGKRYGMVIVDDYSC 788
C C GK TK + ++ P + LH D+FG V Y + D+ +
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 269
Query: 789 WTWVKFLS--RKDESHSVFSTFIAQVQNEKGCRIMRVRSDHGGEFENDKFESLFDSYGIA 846
+ WV L R+D VF+T +A ++N+ ++ ++ D G E+ N + GI
Sbjct: 270 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 329
Query: 847 HDFSCPRTHQQNGVIERKNRTLQEMARTMLQETDMAKHFWAEAVNTTCYIQNRIS 901
++ + +GV ER NRTL + RT LQ + + H W A+ + ++N ++
Sbjct: 330 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLA 384
>YME4_YEAST (Q04711) Transposon Ty1 protein B
Length = 1328
Score = 100 bits (250), Expect = 2e-20
Identities = 115/519 (22%), Positives = 227/519 (43%), Gaps = 45/519 (8%)
Query: 1085 QDKDWILTMEEELNQFSKNDVWNLVK-----KPQGVHILGTKWVFRNKLNEKGDVVRNKA 1139
+ + +I +E+NQ K + W+ K + ++ + ++F K + +KA
Sbjct: 819 EKEKYIEAYHKEVNQLLKMNTWDTDKYYDRKEIDPKRVINSMFIFNRKRDGT-----HKA 873
Query: 1140 RLVAQGNSQQEGIDYTETFALVARLEAIRLLISFSVNHNIIVHQMDVKSAFLNGYISEEV 1199
R VA+G+ Q + + A+ +S ++++N + Q+D+ SA+L I EE+
Sbjct: 874 RFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEEL 933
Query: 1200 YVHQPPGFEDEKNPDHVFKLKKSLYGLKQAPRAWYGRLSSFLLDN---EFVRGKVDTTLF 1256
Y+ PP D + +LKKSLYGLKQ+ WY + S+L+ E VRG +
Sbjct: 934 YIRPPPHLGMN---DKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRG------W 984
Query: 1257 CKTYKDDI*IKQIYVDDIIFGSANPSLCKEFSEMMQAELEMSTM------GELKY-FLGI 1309
+K+ ++VDD+I S + + K+ ++ + + + E++Y LG+
Sbjct: 985 SCVFKNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGL 1044
Query: 1310 QVD-QKPEATYIHQSKYTKELLKKFNM---KKSTIAKTPMHPTCILEKEDV---SGKVCQ 1362
++ Q+ + + E + K N+ K P P ++++++ + +
Sbjct: 1045 EIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKE 1104
Query: 1363 KIY--RGMIGSLLYLTAS-RPDILFSVHLCARFQSDPRETHLTAVKRIRRYLKGTTNLGL 1419
K++ + +IG Y+ R D+L+ ++ A+ P L + +++ T + L
Sbjct: 1105 KVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQL 1164
Query: 1420 MYKKTS----EYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSIIALSLAE 1475
++ K + KL DA Y G++ KS GN L ++ S + S+ S E
Sbjct: 1165 IWHKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTE 1223
Query: 1476 AEYISAAICSTQMLWTKHQLEDYQILESNIPIYCDNTAAIS-LSKNPILHSRAKHIEVKY 1534
AE + + + H +++ + D+ + IS + N R + K
Sbjct: 1224 AEIHAISESVPLLNNLSHLVQELNKKPITKGLLTDSKSTISIIISNNEEKFRNRFFGTKA 1283
Query: 1535 HFIRDYV*KGVLLLKFVDTDHQWANIFTKPLADDRFNFI 1573
+RD V L + +++T A++ TKPL F +
Sbjct: 1284 MRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLL 1322
Score = 82.4 bits (202), Expect = 9e-15
Identities = 108/498 (21%), Positives = 186/498 (36%), Gaps = 46/498 (9%)
Query: 574 LDSGCSRHMTGERRMFQELKLKPGGEVGFGGNEKGKIVGSGTIGV---DNSPCIDNVLLV 630
LDSG SR + P V I G + DN+ VL
Sbjct: 33 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 92
Query: 631 DGLNHNLLSISQLADKGYDIIFNQKSCRAVS*IDGSVLFNSKRRNNTYKI--------RL 682
+ ++LLS+++LA F + + DG+VL + + Y + +
Sbjct: 93 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLLPSNI 149
Query: 683 SELETQKVKCLLSVNEEQWVW-HRRLGHASMSKLDLVRGLPTLKFSS----------DAL 731
S V S + + + HR L HA+ + T+ + + D
Sbjct: 150 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQ 209
Query: 732 CEACQKGKFTK---VPFKAKNVVSTSRPLELLHIDLFGLVKTESIGGKRYGMVIVDDYSC 788
C C GK TK + ++ P + LH D+FG V Y + D+ +
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 269
Query: 789 WTWVKFLS--RKDESHSVFSTFIAQVQNEKGCRIMRVRSDHGGEFENDKFESLFDSYGIA 846
+ WV L R+D VF+T +A ++N+ ++ ++ D G E+ N + GI
Sbjct: 270 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 329
Query: 847 HDFSCPRTHQQNGVIERKNRTLQEMARTMLQETDMAKHFWAEAVNTTCYIQNRISIRPIL 906
++ + +GV ER NRTL + RT LQ + + H W A+ + ++N ++ P
Sbjct: 330 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLA-SPKS 388
Query: 907 NKTPYELWKKIKPNFSYFHPFGCVCYALNNKDRLHKFDSKSSKCLLLGYSDRSKGFRIYN 966
K+ + + S PFG +N+ + K + L S S G+ IY
Sbjct: 389 KKSARQHAGLAGLDISTLLPFG-QPVIVNDHNPNSKIHPRGIPGYALHPSRNSYGYIIYL 447
Query: 967 TD-AKTIEECIHVRFDDK-------------LDSDQSKLVEKFADMSINVSDKGKAPEEA 1012
KT++ +V K D D ++L + + +
Sbjct: 448 PSLKKTVDTTNYVILQGKESRLDQFNYDALTFDEDLNRLTASYQSFIASNEIQQSDDLNI 507
Query: 1013 EPEEDSLEEVGLSDSQPQ 1030
E + D ++ L QP+
Sbjct: 508 ESDHDFQSDIELHPEQPR 525
>YJZ7_YEAST (P47098) Transposon Ty1 protein B
Length = 1755
Score = 99.8 bits (247), Expect = 5e-20
Identities = 120/522 (22%), Positives = 232/522 (43%), Gaps = 51/522 (9%)
Query: 1085 QDKDWILTMEEELNQFSKNDVWNLV-----KKPQGVHILGTKWVFRNKLNEKGDVVRNKA 1139
+ + +I +E+NQ K W+ K+ ++ + ++F N+K D +KA
Sbjct: 1246 EKEKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFIF----NKKRDGT-HKA 1300
Query: 1140 RLVAQGNSQQEGIDYTETFALVARLEAIRLLISFSVNHNIIVHQMDVKSAFLNGYISEEV 1199
R VA+G+ Q T + A+ +S ++++N + Q+D+ SA+L I EE+
Sbjct: 1301 RFVARGDIQHPDTYDTGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEEL 1360
Query: 1200 YVHQPPGFEDEKNPDHVFKLKKSLYGLKQAPRAWYGRLSSFLLDN---EFVRGKVDTTLF 1256
Y+ PP D + +LKKS YGLKQ+ WY + S+L+ E VRG +
Sbjct: 1361 YIRPPPHLGMN---DKLIRLKKSHYGLKQSGANWYETIKSYLIKQCGMEEVRG------W 1411
Query: 1257 CKTYKDDI*IKQIYVDDIIFGSANPSLCKEFSEMMQAELEMSTM------GELKY-FLGI 1309
+K+ ++VDD+I S + + K+ ++ + + + E++Y LG+
Sbjct: 1412 SCVFKNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGL 1471
Query: 1310 QVD-QKPEATYIHQSKYTKELLKKFNM---KKSTIAKTPMHPTCILEKEDV---SGKVCQ 1362
++ Q+ + + E + K N+ K P P ++++++ + +
Sbjct: 1472 EIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKE 1531
Query: 1363 KIY--RGMIGSLLYLTAS-RPDILFSVHLCARFQSDPRETHLTAVKRIRRYLKGTTNLGL 1419
K++ + +IG Y+ R D+L+ ++ A+ P L + +++ T + L
Sbjct: 1532 KVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQL 1591
Query: 1420 MYKKTS----EYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSIIALSLAE 1475
++ K + KL DA Y G++ KS GN L ++ S + S+ S E
Sbjct: 1592 IWHKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNIFLLNGKVIGGKSTKASLTCTSTTE 1650
Query: 1476 AEY--ISAAI-CSTQMLWTKHQLEDYQILESNIPIYCDNTAAISLSKNPILHS-RAKHIE 1531
AE IS ++ + + +L I++ + D+ + IS+ K+ R +
Sbjct: 1651 AEIHAISESVPLLNNLSYLIQELNKKPIIKG---LLTDSRSTISIIKSTNEEKFRNRFFG 1707
Query: 1532 VKYHFIRDYV*KGVLLLKFVDTDHQWANIFTKPLADDRFNFI 1573
K +RD V L + +++T A++ TKPL F +
Sbjct: 1708 TKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTFKLL 1749
Score = 82.0 bits (201), Expect = 1e-14
Identities = 108/498 (21%), Positives = 186/498 (36%), Gaps = 46/498 (9%)
Query: 574 LDSGCSRHMTGERRMFQELKLKPGGEVGFGGNEKGKIVGSGTIGV---DNSPCIDNVLLV 630
LDSG SR + P V I G + DN+ VL
Sbjct: 460 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 519
Query: 631 DGLNHNLLSISQLADKGYDIIFNQKSCRAVS*IDGSVLFNSKRRNNTYKI--------RL 682
+ ++LLS+++LA F + + DG+VL + + Y + +
Sbjct: 520 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVQYGDFYWVSKRYLLPSNI 576
Query: 683 SELETQKVKCLLSVNEEQWVW-HRRLGHASMSKLDLVRGLPTLKFSS----------DAL 731
S V S + + + HR L HA+ + T+ + + D
Sbjct: 577 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQ 636
Query: 732 CEACQKGKFTK---VPFKAKNVVSTSRPLELLHIDLFGLVKTESIGGKRYGMVIVDDYSC 788
C C GK TK + ++ P + LH D+FG V Y + D+ +
Sbjct: 637 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 696
Query: 789 WTWVKFLS--RKDESHSVFSTFIAQVQNEKGCRIMRVRSDHGGEFENDKFESLFDSYGIA 846
+ WV L R+D VF+T +A ++N+ ++ ++ D G E+ N + GI
Sbjct: 697 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 756
Query: 847 HDFSCPRTHQQNGVIERKNRTLQEMARTMLQETDMAKHFWAEAVNTTCYIQNRISIRPIL 906
++ + +GV ER NRTL + RT LQ + + H W A+ + ++N ++ P
Sbjct: 757 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLA-SPKS 815
Query: 907 NKTPYELWKKIKPNFSYFHPFGCVCYALNNKDRLHKFDSKSSKCLLLGYSDRSKGFRIYN 966
K+ + + S PFG +N+ + K + L S S G+ IY
Sbjct: 816 KKSARQHAGLAGLDISTLLPFG-QPVIVNDHNPNSKIHPRGIPGYALHPSRNSYGYIIYL 874
Query: 967 TD-AKTIEECIHVRFDDK-------------LDSDQSKLVEKFADMSINVSDKGKAPEEA 1012
KT++ +V K D D ++L + + +
Sbjct: 875 PSLKKTVDTTNYVILQGKESRLDQFNYDALTFDEDLNRLTASYQSFIASNEIQESNDLNI 934
Query: 1013 EPEEDSLEEVGLSDSQPQ 1030
E + D ++ L QP+
Sbjct: 935 ESDHDFQSDIELHPEQPR 952
>YMU0_YEAST (Q04670) Transposon Ty1 protein B
Length = 1328
Score = 98.6 bits (244), Expect = 1e-19
Identities = 119/521 (22%), Positives = 223/521 (41%), Gaps = 49/521 (9%)
Query: 1085 QDKDWILTMEEELNQFSKNDVWNLV-----KKPQGVHILGTKWVFRNKLNEKGDVVRNKA 1139
+ + +I +E+NQ K W+ K+ ++ + ++F K + +KA
Sbjct: 819 EKEKYIQAYHKEVNQLLKMKTWDTDRYYDRKEIDPKRVINSMFIFNRKRDGT-----HKA 873
Query: 1140 RLVAQGNSQQEGIDYTETFALVARLEAIRLLISFSVNHNIIVHQMDVKSAFLNGYISEEV 1199
R VA+G+ Q + A+ +S ++++N + Q+D+ SA+L I EE+
Sbjct: 874 RFVARGDIQHPDTYDPGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEEL 933
Query: 1200 YVHQPPGFEDEKNPDHVFKLKKSLYGLKQAPRAWYGRLSSFLLDN---EFVRGKVDTTLF 1256
Y+ PP D + +LKKSLYGLKQ+ WY + S+L+ E VRG +
Sbjct: 934 YIRPPPHLGMN---DKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRG------W 984
Query: 1257 CKTYKDDI*IKQIYVDDIIFGSANPSLCKEFSEMMQAELEMSTM------GELKY-FLGI 1309
+K+ ++VDD+I S + + K+ ++ + + + E++Y LG+
Sbjct: 985 SCVFKNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGL 1044
Query: 1310 QVD-QKPEATYIHQSKYTKELLKKFNM---KKSTIAKTPMHPTCI-------LEKEDVSG 1358
++ Q+ + + E + K N+ K P P LE++D
Sbjct: 1045 EIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQELELEEDDYKM 1104
Query: 1359 KVCQKIYRGMIGSLLYLTAS-RPDILFSVHLCARFQSDPRETHLTAVKRIRRYLKGTTNL 1417
KV + + +IG Y+ R D+L+ ++ A+ P + L + +++ T +
Sbjct: 1105 KVHE--MQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRDK 1162
Query: 1418 GLMYKKTSEY----KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSIIALSL 1473
L++ K+ KL DA Y G++ KS GN L ++ S + S+ S
Sbjct: 1163 QLIWHKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTST 1221
Query: 1474 AEAEYISAAICSTQMLWTKHQLEDYQILESNIPIYCDNTAAIS-LSKNPILHSRAKHIEV 1532
EAE + + + H +++ + D+ + IS + N R +
Sbjct: 1222 TEAEIHAISESVPLLNNLSHLVQELNKKPITKGLLTDSKSTISIIISNNEEKFRNRFFGT 1281
Query: 1533 KYHFIRDYV*KGVLLLKFVDTDHQWANIFTKPLADDRFNFI 1573
K +RD V L + +++T A++ TKPL F +
Sbjct: 1282 KAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLL 1322
Score = 82.4 bits (202), Expect = 9e-15
Identities = 108/498 (21%), Positives = 186/498 (36%), Gaps = 46/498 (9%)
Query: 574 LDSGCSRHMTGERRMFQELKLKPGGEVGFGGNEKGKIVGSGTIGV---DNSPCIDNVLLV 630
LDSG SR + P V I G + DN+ VL
Sbjct: 33 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 92
Query: 631 DGLNHNLLSISQLADKGYDIIFNQKSCRAVS*IDGSVLFNSKRRNNTYKI--------RL 682
+ ++LLS+++LA F + + DG+VL + + Y + +
Sbjct: 93 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLLPSNI 149
Query: 683 SELETQKVKCLLSVNEEQWVW-HRRLGHASMSKLDLVRGLPTLKFSS----------DAL 731
S V S + + + HR L HA+ + T+ + + D
Sbjct: 150 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQ 209
Query: 732 CEACQKGKFTK---VPFKAKNVVSTSRPLELLHIDLFGLVKTESIGGKRYGMVIVDDYSC 788
C C GK TK + ++ P + LH D+FG V Y + D+ +
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 269
Query: 789 WTWVKFLS--RKDESHSVFSTFIAQVQNEKGCRIMRVRSDHGGEFENDKFESLFDSYGIA 846
+ WV L R+D VF+T +A ++N+ ++ ++ D G E+ N + GI
Sbjct: 270 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 329
Query: 847 HDFSCPRTHQQNGVIERKNRTLQEMARTMLQETDMAKHFWAEAVNTTCYIQNRISIRPIL 906
++ + +GV ER NRTL + RT LQ + + H W A+ + ++N ++ P
Sbjct: 330 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLA-SPKS 388
Query: 907 NKTPYELWKKIKPNFSYFHPFGCVCYALNNKDRLHKFDSKSSKCLLLGYSDRSKGFRIYN 966
K+ + + S PFG +N+ + K + L S S G+ IY
Sbjct: 389 KKSARQHAGLAGLDISTLLPFG-QPVIVNDHNPNSKIHPRGIPGYALHPSRNSYGYIIYL 447
Query: 967 TD-AKTIEECIHVRFDDK-------------LDSDQSKLVEKFADMSINVSDKGKAPEEA 1012
KT++ +V K D D ++L + + +
Sbjct: 448 PSLKKTVDTTNYVILQGKESRLDQFNYDALTFDEDLNRLTASYQSFIASNEIQQSDDLNI 507
Query: 1013 EPEEDSLEEVGLSDSQPQ 1030
E + D ++ L QP+
Sbjct: 508 ESDHDFQSDIELHPEQPR 525
>YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein
Length = 1803
Score = 94.7 bits (234), Expect = 2e-18
Identities = 113/475 (23%), Positives = 204/475 (42%), Gaps = 58/475 (12%)
Query: 1138 KARLVAQGNSQQEGIDYTETFALVARLEA----IRLLISFSVNHNIIVHQMDVKSAFLNG 1193
KAR+V +G++Q +T++++ I++ + + N N+ + +D+ AFL
Sbjct: 1338 KARIVCRGDTQSP-----DTYSVITTESLNHNHIKIFLMIANNRNMFMKTLDINHAFLYA 1392
Query: 1194 YISEEVYVHQPPGFEDEKNPDHVFKLKKSLYGLKQAPRAWYGRLSSF-----LLDNEFVR 1248
+ EE+Y+ P D + V KL K+LYGLKQ+P+ W L + L DN +
Sbjct: 1393 KLEEEIYIPHP---HDRRC---VVKLNKALYGLKQSPKEWNDHLRQYLNGIGLKDNSYTP 1446
Query: 1249 GKVDTTLFCKTYKDDI*IKQIYVDDIIFGSANPSLCKEFSEMMQAELEMSTMGEL----- 1303
G T +D + +YVDD + ++N EF +++ E+ G L
Sbjct: 1447 GLYQT-------EDKNLMIAVYVDDCVIAASNEQRLDEFINKLKSNFELKITGTLIDDVL 1499
Query: 1304 -KYFLGIQV--DQKPEATYIHQSKYTKELLKKFNMKKSTIAKTP---MHPTCILEKEDVS 1357
LG+ + +++ + + + KK+N + I K+ M I K+DV
Sbjct: 1500 DTDILGMDLVYNKRLGTIDLTLKSFINRMDKKYNEELKKIRKSSIPHMSTYKIDPKKDVL 1559
Query: 1358 GKVCQKIYRG------MIGSLLYLT-ASRPDILFSVHLCARFQSDPRETHLTAVKRIRRY 1410
++ +G ++G L Y+ R DI F+V AR + P E + +I +Y
Sbjct: 1560 QMSEEEFRQGVLKLQQLLGELNYVRHKCRYDIEFAVKKVARLVNYPHERVFYMIYKIIQY 1619
Query: 1411 LKGTTNLGLMYKK--TSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSI 1468
L ++G+ Y + + K+ DA G + +S G + G N+ + S + +
Sbjct: 1620 LVRYKDIGIHYDRDCNKDKKVIAITDAS-VGSEYDAQSRIGVILWYGMNIFNVYSNKSTN 1678
Query: 1469 IALSLAEAE----YISAAICSTQMLWTKHQLEDYQILESNIPIYCDNTAAISLSKNPILH 1524
+S EAE Y A T + K E ++I + D+ AI
Sbjct: 1679 RCVSSTEAELHAIYEGYADSETLKVTLKELGEGD---NNDIVMITDSKPAIQGLNRSYQQ 1735
Query: 1525 SRAKHIEVKYHFIRDYV*KGVLLLKFVDTDHQWANIFTKPLADD---RFNFILKN 1576
+ K +K I++ + + + L + A++ TKP++ RF +LKN
Sbjct: 1736 PKEKFTWIKTEIIKEKIKEKSIKLLKITGKGNIADLLTKPVSASDFKRFIQVLKN 1790
Score = 83.2 bits (204), Expect = 5e-15
Identities = 56/207 (27%), Positives = 96/207 (46%), Gaps = 12/207 (5%)
Query: 704 HRRLGHASMSKLD-------LVRGLPTLKFSSDALCEACQKGKFTK---VPFKAKNVVST 753
H+R+GH + +++ L +K ++ C+ C+ K TK N +
Sbjct: 562 HKRMGHTGIQQIENSIKHNHYEESLDLIKEPNEFWCQTCKISKATKRNHYTGSMNNHSTD 621
Query: 754 SRPLELLHIDLFGLVKTESIGGKRYGMVIVDDYS--CWTWVKFLSRKDESHSVFSTFIAQ 811
P +D+FG V + + KRY +++VD+ + C T F + + I
Sbjct: 622 HEPGSSWCMDIFGPVSSSNADTKRYMLIMVDNNTRYCMTSTHFNKNAETILAQVRKNIQY 681
Query: 812 VQNEKGCRIMRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTHQQNGVIERKNRTLQEM 871
V+ + ++ + SD G EF ND+ E F S GI H + + H NG ER RT+
Sbjct: 682 VETQFDRKVREINSDRGTEFTNDQIEEYFISKGIHHILTSTQDHAANGRAERYIRTIITD 741
Query: 872 ARTMLQETDMAKHFWAEAVNTTCYIQN 898
A T+L+++++ FW AV + I+N
Sbjct: 742 ATTLLRQSNLRVKFWEYAVTSATNIRN 768
>M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820
(ORF170)
Length = 170
Score = 91.7 bits (226), Expect = 1e-17
Identities = 46/97 (47%), Positives = 63/97 (64%)
Query: 1076 EPKSIDEALQDKDWILTMEEELNQFSKNDVWNLVKKPQGVHILGTKWVFRNKLNEKGDVV 1135
EPKS+ AL+D W M+EEL+ S+N W LV P +ILG KWVF+ KL+ G +
Sbjct: 27 EPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLD 86
Query: 1136 RNKARLVAQGNSQQEGIDYTETFALVARLEAIRLLIS 1172
R KARLVA+G Q+EGI + ET++ V R IR +++
Sbjct: 87 RLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILN 123
>M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240
(ORF111a)
Length = 111
Score = 69.7 bits (169), Expect = 6e-11
Identities = 37/109 (33%), Positives = 62/109 (55%), Gaps = 2/109 (1%)
Query: 1373 LYLTASRPDILFSVHLCARFQSDPRETHLTAVKRIRRYLKGTTNLGLMYKKTSEYKLSGY 1432
+YLT +RPD+ F+V+ ++F S R + AV ++ Y+KGT GL Y TS+ +L +
Sbjct: 1 MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60
Query: 1433 CDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSIIALSLAEAEYISA 1481
D+D+A R+S +G C + L + R+SI++ L + + I A
Sbjct: 61 ADSDWASCPDTRRSVTGFCSLV--PLWFLGALRKSILSPGLLQRQNIEA 107
>M710_ARATH (P92512) Hypothetical mitochondrial protein AtMg00710
(ORF120)
Length = 120
Score = 54.3 bits (129), Expect = 3e-06
Identities = 28/68 (41%), Positives = 37/68 (54%)
Query: 865 NRTLQEMARTMLQETDMAKHFWAEAVNTTCYIQNRISIRPILNKTPYELWKKIKPNFSYF 924
NRT+ E R+ML E + K F A+A NT +I N+ I P E+W + P +SY
Sbjct: 2 NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61
Query: 925 HPFGCVCY 932
FGCV Y
Sbjct: 62 RRFGCVAY 69
>POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1196
Score = 50.1 bits (118), Expect = 5e-05
Identities = 52/190 (27%), Positives = 83/190 (43%), Gaps = 19/190 (10%)
Query: 681 RLSELETQKVKCLLSVNEEQWVWHRRLGHASMSKLDLVRGLPTLKFSSDALCEACQKGKF 740
RL+ L QK+K LL E + R TL++ +D+ C C +
Sbjct: 849 RLTHLGYQKMKALLDRGESPYYMLNRD--------------KTLQYVADS-CTVCAQVNA 893
Query: 741 TKVPFKAKNVVSTSRPLELLHIDLFGLVKTESIGGKRYGMVIVDDYSCWTWVKFLSRKDE 800
+K A V RP ID F VK + G +Y +V VD +S W F ++++
Sbjct: 894 SKAKIGAGVRVRGHRPGSHWEID-FTEVKP-GLYGYKYLLVFVDTFSGWVEA-FPTKRET 950
Query: 801 SHSVFSTFIAQVQNEKGCRIMRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTHQQNGV 860
+ V + ++ G + + SD+G F + +S+ D GI C Q +G
Sbjct: 951 ARVVSKKLLEEIFPRFGMPQV-LGSDNGPAFTSQVSQSVADLLGIDWKLHCAYRPQSSGQ 1009
Query: 861 IERKNRTLQE 870
+ER NRT++E
Sbjct: 1010 VERMNRTIKE 1019
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 50.1 bits (118), Expect = 5e-05
Identities = 65/259 (25%), Positives = 108/259 (41%), Gaps = 35/259 (13%)
Query: 732 CEACQKGKFTKVPFKAKNVVST-SRPLELLHIDLFG-LVKTESIGGKRYGMVIVDD---Y 786
C+ CQK K TK + T + + +D G L K+E+ G Y + ++ D Y
Sbjct: 939 CQKCQKAKTTKHTKTPMTITETPEHAFDRVVVDTIGPLPKSEN--GNEYAVTLICDLTKY 996
Query: 787 SCWTWVKFLSRKDESHSVFSTFIAQVQNEKGCRIMRVRSDHGGEFENDKFESLFDSYGIA 846
+ S K + ++F +FI + K +D G E++N L I
Sbjct: 997 LVAIPIANKSAKTVAKAIFESFILKYGPMK-----TFITDMGTEYKNSIITDLCKYLKIK 1051
Query: 847 HDFSCPRTHQQNGVIERKNRTLQEMARTMLQ----ETDMAKHFWAEAVNTTCYIQNRISI 902
+ S HQ GV+ER +RTL E R+ + + D+ ++ NTT +
Sbjct: 1052 NITSTAHHHQTVGVVERSHRTLNEYIRSYISTDKTDWDVWLQYFVYCFNTTQSM------ 1105
Query: 903 RPILNKTPYEL----WKKIKPNFSYFHP----FGCVCYALNNKDRLHKFDSKSSKCLLLG 954
+ N PYEL + +F+ H + YA +K RL +++ K LL
Sbjct: 1106 --VHNYCPYELVFGRTSNLPKHFNKLHSIEPIYNIDDYAKESKYRLEVAYARARK-LLEA 1162
Query: 955 YSDRSKGFRIYNTDAKTIE 973
+ +++K Y+ K IE
Sbjct: 1163 HKEKNK--ENYDLKVKDIE 1179
>POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1189
Score = 47.8 bits (112), Expect = 2e-04
Identities = 45/165 (27%), Positives = 70/165 (42%), Gaps = 4/165 (2%)
Query: 717 LVRGLPTLKFSSDALCEACQKGKFTKVPFKAKNVVSTSRPLELLHIDLFGLVKTESIGGK 776
L+ TL + C+ CQ+ A +RP ID F VK G K
Sbjct: 865 LIPRASTLIEQVTSACKVCQQVNAGATRVPAGKRTRGNRPGVYWEID-FTEVKPHYAGYK 923
Query: 777 RYGMVIVDDYSCWTWVKFLSRKDESHSVFSTFIAQVQNEKGCRIMRVRSDHGGEFENDKF 836
Y +V VD +S W F +R++ +H V + ++ G + + SD+G F +
Sbjct: 924 -YLLVFVDTFSGWVEA-FPTRQETAHIVAKKILEEIFPRFGLPKV-IGSDNGPAFVSQVS 980
Query: 837 ESLFDSYGIAHDFSCPRTHQQNGVIERKNRTLQEMARTMLQETDM 881
+ L GI C Q +G +ER NRT++E + ET +
Sbjct: 981 QGLARILGINWKLHCAYRPQSSGQVERMNRTIKETLTKLTLETGL 1025
>POL_MLVAK (P03357) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 843
Score = 46.6 bits (109), Expect = 5e-04
Identities = 52/190 (27%), Positives = 83/190 (43%), Gaps = 20/190 (10%)
Query: 681 RLSELETQKVKCLLSVNEEQWVWHRRLGHASMSKLDLVRGLPTLKFSSDALCEACQKGKF 740
RL+ L QK+K LL E + R TL++ +D+ C C +
Sbjct: 497 RLTHLGYQKMKALLDRGESPYYMLNRD--------------KTLQYVADS-CTVCAQVNA 541
Query: 741 TKVPFKAKNVVSTSRPLELLHIDLFGLVKTESIGGKRYGMVIVDDYSCWTWVKFLSRKDE 800
+K A V RP ID F VK + G +Y +V VD +S W F ++++
Sbjct: 542 SKAKIGAGVRVRGHRPGSHWEID-FTEVKP-GLYGYKYLLVFVDTFSGWVEA-FPTKRET 598
Query: 801 SHSVFSTFIAQVQNEKGCRIMRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTHQQNGV 860
+ V + ++ G + + SD+G F + +S+ D GI C Q +G
Sbjct: 599 ARVVSKKLLEEIFPRFGMPQV-LGSDNGPAFTSQVSQSVADLLGI-DKLHCAYRPQSSGQ 656
Query: 861 IERKNRTLQE 870
+ER NRT++E
Sbjct: 657 VERMNRTIKE 666
>POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 1046
Score = 46.6 bits (109), Expect = 5e-04
Identities = 43/152 (28%), Positives = 70/152 (45%), Gaps = 8/152 (5%)
Query: 732 CEACQK--GKFTKVPFKAKNVVSTSRPLELLHIDLFGLVKTESIGGKRYGMVIVDDYSCW 789
C+ CQ+ T+VP + +RP ID F VK G K Y +V VD +S W
Sbjct: 737 CKVCQQVNAGATRVPEGKRT--RGNRPGVYWEID-FTEVKPHYAGYK-YLLVFVDTFSGW 792
Query: 790 TWVKFLSRKDESHSVFSTFIAQVQNEKGCRIMRVRSDHGGEFENDKFESLFDSYGIAHDF 849
+ +R++ +H V + ++ G + + SD+G F + + L + GI
Sbjct: 793 VEA-YPTRQETAHMVAKKILEEIFPRFGLPKV-IGSDNGPAFVSQVSQGLARTLGINWKL 850
Query: 850 SCPRTHQQNGVIERKNRTLQEMARTMLQETDM 881
C Q +G +ER NRT++E + ET +
Sbjct: 851 HCAYRPQSSGQVERMNRTIKETLTKLTLETGL 882
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.351 0.155 0.541
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164,446,896
Number of Sequences: 164201
Number of extensions: 6579590
Number of successful extensions: 28531
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 28352
Number of HSP's gapped (non-prelim): 136
length of query: 1583
length of database: 59,974,054
effective HSP length: 124
effective length of query: 1459
effective length of database: 39,613,130
effective search space: 57795556670
effective search space used: 57795556670
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 73 (32.7 bits)
Lotus: description of TM0134.20