BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0134.17
(431 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YNN6_YEAST (P53911) Hypothetical 49.4 kDa protein in NAM9-FPR1 i... 42 0.004
IF2_YERPE (Q8ZBC2) Translation initiation factor IF-2 38 0.058
ACIN_HUMAN (Q9UKV3) Apoptotic chromatin condensation inducer in ... 37 0.13
ADFP_MOUSE (P43883) Adipophilin (Adipose differentiation-related... 36 0.17
SFRB_HUMAN (Q05519) Splicing factor arginine/serine-rich 11 (Arg... 35 0.29
PCLO_RAT (Q9JKS6) Piccolo protein (Multidomain presynaptic cytom... 34 0.64
GOA4_HUMAN (Q13439) Golgi autoantigen, golgin subfamily A member... 34 0.64
ANRY_HUMAN (Q6UB99) Ankyrin repeat domain protein 11 (Ankyrin re... 34 0.64
SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calciu... 34 0.83
INCE_HUMAN (Q9NQS7) Inner centromere protein 34 0.83
IF2_PHOLL (Q7MYY7) Translation initiation factor IF-2 33 1.1
YAP1_YEAST (P19880) AP-1 like transcription factor YAP1 (Phenant... 33 1.4
ADFP_HUMAN (Q99541) Adipophilin (Adipose differentiation-related... 33 1.4
ACIN_MOUSE (Q9JIX8) Apoptotic chromatin condensation inducer in ... 33 1.4
LAD1_MOUSE (P57016) Ladinin 1 (Lad-1) (Linear IgA disease autoan... 33 1.9
CAFA_MOUSE (Q9QWF0) Chromatin assembly factor 1 subunit A (CAF-1... 33 1.9
GAG_MLVRD (P11269) Gag polyprotein [Contains: Core protein p15; ... 32 2.4
SE11_MOUSE (Q8C1B7) Septin 11 32 3.2
IF3A_HUMAN (Q14152) Eukaryotic translation initiation factor 3 s... 32 3.2
GOA4_MOUSE (Q91VW5) Golgi autoantigen, golgin subfamily A member... 32 3.2
>YNN6_YEAST (P53911) Hypothetical 49.4 kDa protein in NAM9-FPR1
intergenic region
Length = 425
Score = 41.6 bits (96), Expect = 0.004
Identities = 50/207 (24%), Positives = 86/207 (41%), Gaps = 31/207 (14%)
Query: 56 IQRAPVGQGKS---KAIRETIQRRDKKIKSGERTA-----KEPLYPRKE---SFERRRPW 104
+Q+ P+ + +S + RE + ++K+KS +TA + L KE E +
Sbjct: 204 VQKEPIKEVQSDEKELQREHMSEEEQKMKSTNKTAAPVRKSQRLKRSKEVKFEDEEKEEI 263
Query: 105 HQTDSRRQEESGKSLNAHLTELLRKVKATHVVEAGEKETDPPRVVVDKTKWCEYHR---- 160
+ +++ +E+ K E +++ K TH E +++ + ++ K Y
Sbjct: 264 EEDNTKDEEQKEKK------EEIQEPKITHNEEVDKEKNENEEGDDEREKSTSYENTNGS 317
Query: 161 -SAGYDTGDCFTLKNEIERLIRAGRSQLNDRGDRWRG*RQQGNRYKGDR*QDDRRRDDRR 219
S G D G L E ER Q+ G + ++ KGD QDD ++D +
Sbjct: 318 ESEGVDEGVDEELGYESEREAEGKGKQIESEGGNLK---KKTENKKGDDQQDDTKKDSK- 373
Query: 220 RTPTSDKKETLATRKKGSEETFNKDLE 246
DK E LA R + S T N E
Sbjct: 374 -----DKNEPLAKRTRHSSSTGNTSNE 395
>IF2_YERPE (Q8ZBC2) Translation initiation factor IF-2
Length = 892
Score = 37.7 bits (86), Expect = 0.058
Identities = 46/219 (21%), Positives = 90/219 (41%), Gaps = 29/219 (13%)
Query: 44 REQEQASCDRGLIQRAPVGQGKSKAIRETIQRRDKKIKSGERTAKEPLYPRKESFERRRP 103
RE E+ + + + K+K E +R+ K+ + A++ +++ E+ +P
Sbjct: 109 REAEEQAQREAEATAQKIAEEKAKREAEEQAKREAAEKAKRQAAEKEKVTNQQTDEKTKP 168
Query: 104 WHQTDSRRQEESGKSLNAHLTELLRKVK--ATHVVE-----AGEKETDPPRVVVDKTKWC 156
+RR+ E+ + + E RKV+ A V E A E E P V ++T+
Sbjct: 169 AQTDKARREAEAAELKRSVEEETRRKVEEDAKRVAEEARKMAAENEGKWPEPVAEQTESA 228
Query: 157 EYHRSAGYDTGDCFTLKNEIERLIRAGRSQLNDRGDRWRG*RQQGNRYKGDR*QDDRRRD 216
+YH + ++E + + DR R RG + + KG++ + +
Sbjct: 229 DYHVTTSQHAR---AAEDENDAKVE------GDRRSRTRGGKATKQK-KGNKLSESK--- 275
Query: 217 DRRRTPTSDKKETLATRKKGSEE--TFNKDLEPPVGTIN 253
+D++E A +KG + T + PV +N
Sbjct: 276 -------ADREEARAVGRKGKRKPSTLQQSFNKPVVAVN 307
>ACIN_HUMAN (Q9UKV3) Apoptotic chromatin condensation inducer in the
nucleus (Acinus)
Length = 1341
Score = 36.6 bits (83), Expect = 0.13
Identities = 45/203 (22%), Positives = 81/203 (39%), Gaps = 27/203 (13%)
Query: 65 KSKAIRETIQRRDKKIKSGERTAKEPLYPRKESFERRRPWHQTDSRRQEESGKSLNAH-- 122
+ +A+RE R+++++ ERT E + R + E R ++ RR++E KS
Sbjct: 1138 QERAVREQWAEREREMERRERTRSEREWDRDKVREGPRSRSRSRDRRRKERAKSKEKKSE 1197
Query: 123 -------------LTELLRKVKATHVV--------EAGEKETDPPRVVVDKTKWCEYHRS 161
L +L RK KA + + +KE + ++ K +
Sbjct: 1198 KKEKAQEEPPAKLLDDLFRKTKAAPCIYWLPLTDSQIVQKEAERAERAKEREKRRKEQEE 1257
Query: 162 AGYDTGDCFTLKNEIERLIRAGRSQLNDRGDRWRG*RQQGNRYKGDR*QDDRRRDDRRRT 221
+ + +L R R + + DR R ++ R +GDR +D R DR R
Sbjct: 1258 EEQKEREKEAERERNRQLEREKRREHSRERDRER--ERERERDRGDRDRD--RERDRERG 1313
Query: 222 PTSDKKETLATRKKGSEETFNKD 244
D+++T + S T +D
Sbjct: 1314 RERDRRDTKRHSRSRSRSTPVRD 1336
>ADFP_MOUSE (P43883) Adipophilin (Adipose differentiation-related
protein) (ADRP)
Length = 425
Score = 36.2 bits (82), Expect = 0.17
Identities = 31/109 (28%), Positives = 48/109 (43%), Gaps = 15/109 (13%)
Query: 70 RETIQRRDKKIKSGERTAKEPLYPRKESFERR---RPWHQTDSRRQEESGKSLNAHLTEL 126
+E ++ KK++ + K Y R ES + R +HQ SR +E KS E
Sbjct: 193 QEELEMEAKKVEGFDMVQKPSNYERLESLSTKLCSRAYHQALSRVKEAKQKS-----QET 247
Query: 127 LRKVKAT-HVVEAGEKETDPPRVVV----DK--TKWCEYHRSAGYDTGD 168
+ ++ +T H++E K + DK W E+ RS GYD D
Sbjct: 248 ISQLHSTVHLIEFARKNMHSANQKIQGAQDKLYVSWVEWKRSIGYDDTD 296
>SFRB_HUMAN (Q05519) Splicing factor arginine/serine-rich 11
(Arginine-rich 54 kDa nuclear protein) (p54)
Length = 484
Score = 35.4 bits (80), Expect = 0.29
Identities = 44/183 (24%), Positives = 77/183 (42%), Gaps = 18/183 (9%)
Query: 74 QRRDKKIKSGERTAKEPL---YPRKESFERRRPWHQTDSRRQEESGKSLNAHLTELLRKV 130
+RR + +S R + P + R S RRR ++ SRR+ +S + +H E R+
Sbjct: 245 KRRHSRSRSRSRRRRTPSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSRERGRRS 304
Query: 131 KATHVVEAGEKETDPPRVVVDKTKWCEYHRSAGYDTG--DCFTLKNEIERLIRAG-RSQL 187
++T +KE DK K Y T + R R+G RS
Sbjct: 305 RSTSKTRDKKKE--------DKEKKRSKTPPKSYSTARRSRSASRERRRRRSRSGTRSPK 356
Query: 188 NDRGDRWRG*RQQG-NRYKGDR*QD---DRRRDDRRRTPTSDKKETLATRKKGSEETFNK 243
R + + R R+K ++ +D +R RD+R R+ + KK + + + +K
Sbjct: 357 KPRSPKRKLSRSPSPRRHKKEKKKDKDKERSRDERERSTSKKKKSKDKEKDRERKSESDK 416
Query: 244 DLE 246
D++
Sbjct: 417 DVK 419
>PCLO_RAT (Q9JKS6) Piccolo protein (Multidomain presynaptic cytomatrix
protein)
Length = 5085
Score = 34.3 bits (77), Expect = 0.64
Identities = 25/90 (27%), Positives = 37/90 (40%), Gaps = 3/90 (3%)
Query: 59 APVGQGKSKAIRETIQRRDKKIKSGERTAKEPLYPRKE--SFERRRPWHQTDSRRQEESG 116
AP K T + KK G+ A++P+ P KE S E+ P TD + +E G
Sbjct: 1090 APAEPSSQKTPTGTQVKGKKKEAEGKTEAEKPV-PEKETASIEKTPPMVTTDQKLEESEG 1148
Query: 117 KSLNAHLTELLRKVKATHVVEAGEKETDPP 146
K + + + A +KE PP
Sbjct: 1149 KKSKVSALPEKKPSEEEKAISADKKERKPP 1178
>GOA4_HUMAN (Q13439) Golgi autoantigen, golgin subfamily A member 4
(Trans-Golgi p230) (256 kDa golgin) (Golgin-245) (72.1
protein)
Length = 2230
Score = 34.3 bits (77), Expect = 0.64
Identities = 49/210 (23%), Positives = 95/210 (44%), Gaps = 28/210 (13%)
Query: 42 VFREQEQASCDRGLIQRAPVGQGKSKAIRETIQRRDKKIKSGERTAKEPLYPRKE----- 96
VF ++E D + V G S ET+Q+R K+ ++ + KE + KE
Sbjct: 257 VFTKEENPESDGEPV----VEDGTSVKTLETLQQRVKRQENLLKRCKETIQSHKEQCTLL 312
Query: 97 SFERRRPWHQTDSRRQE-ESGKSLN-AHLTELLRKVK-ATHVVEAGEKETDPPRVVVDKT 153
+ E+ Q D R QE E K L+ A T+L+ +++ A +++E E++ +V+ +T
Sbjct: 313 TSEKEALQEQLDERLQELEKIKDLHMAEKTKLITQLRDAKNLIEQLEQDKG---MVIAET 369
Query: 154 KWCEYHRSAGYDTGDCFTLKNEIERLIRAGRSQLNDRGDRWRG*RQQGNRYKGDR*Q--- 210
K + +K E +R+ Q+ +G+ R +++ R + +
Sbjct: 370 K---------RQMHETLEMKEEEIAQLRSRIKQMTTQGEELREQKEKSERAAFEELEKAL 420
Query: 211 -DDRRRDDRRRTPTSDKKETLATRKKGSEE 239
++ ++ RR ++ E + T +K SEE
Sbjct: 421 STAQKTEEARRKLKAEMDEQIKTIEKTSEE 450
>ANRY_HUMAN (Q6UB99) Ankyrin repeat domain protein 11 (Ankyrin
repeat-containing cofactor-1)
Length = 2664
Score = 34.3 bits (77), Expect = 0.64
Identities = 24/91 (26%), Positives = 44/91 (47%), Gaps = 2/91 (2%)
Query: 65 KSKAIRETIQRRDKKIKSGERTAKEPLYPRKESFERRRPWHQTDSRRQEESGKSL-NAHL 123
K+ + RE ++ +K++K +A L +K+ + R W R ++ L H
Sbjct: 1431 KNDSEREPSKKIEKELKPYGSSAINILKEKKKREKHREKWRDEKERHRDRHADGLLRHHR 1490
Query: 124 TELLRKVKATHVVEAGEKETDPPRVVVDKTK 154
ELLR + +K++ PPRV+ DK++
Sbjct: 1491 DELLRHHRDEQKPATRDKDS-PPRVLKDKSR 1520
>SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich
calcium-binding protein precursor
Length = 852
Score = 33.9 bits (76), Expect = 0.83
Identities = 18/59 (30%), Positives = 28/59 (46%)
Query: 188 NDRGDRWRG*RQQGNRYKGDR*QDDRRRDDRRRTPTSDKKETLATRKKGSEETFNKDLE 246
+D GD Q +R++G R ++D DD + SD+ + R G EE + D E
Sbjct: 410 DDEGDSTESDHHQAHRHRGHREEEDEEDDDEGDSTESDRHQAHRHRGHGEEEDEDDDDE 468
Score = 32.7 bits (73), Expect = 1.9
Identities = 39/174 (22%), Positives = 63/174 (35%), Gaps = 24/174 (13%)
Query: 73 IQRRDKKIKSGERTAKEPLYPRKESFERRRPWHQTDSRRQEESGKSLNAHLTELLRKVKA 132
+ RR + GE +E + S E R H + E+ TE R
Sbjct: 172 VLRRAPRGHGGEEEGEEEEEEEEVSPEHRHRGHGKEDEEDEDDDS------TESDRHQAH 225
Query: 133 THVVEAGEKETDPPRVVVDKTKWCEY--HRSAGYDTGDCFTLKNEIERLIRAGRSQLNDR 190
H E++ D D T+ + HR G++ + +D
Sbjct: 226 RHRGHREEEDEDDDDDEGDSTESDHHQAHRHRGHEEEE--------------DEEDDDDE 271
Query: 191 GDRWRG*RQQGNRYKGDR*QDDRRRDDRRRTPTSDKKETLATRKKGSEETFNKD 244
GD R Q +R++G R ++D DD + SD+ + A R +G E + D
Sbjct: 272 GDSTESDRHQAHRHRGHREEEDEDDDDEGDSTESDRHQ--AHRHRGHREEEDDD 323
Score = 32.7 bits (73), Expect = 1.9
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 188 NDRGDRWRG*RQQGNRYKGDR*QDDRRRDDRRRTPTSDKKETLATRKKGSEETFNKD 244
+D GD R Q +R++G R ++D DD + SD+ + A R +G E ++D
Sbjct: 326 DDEGDSTESDRHQAHRHRGHREEEDEDDDDEGDSTESDRHQ--AHRHRGHREEEDED 380
Score = 32.7 bits (73), Expect = 1.9
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 188 NDRGDRWRG*RQQGNRYKGDR*QDDRRRDDRRRTPTSDKKETLATRKKGSEETFNKD 244
+D GD R Q +R++G R ++D DD + SD+ + A R +G E ++D
Sbjct: 354 DDEGDSTESDRHQAHRHRGHREEEDEDDDDEGDSTESDRHQ--AHRHRGHREEEDED 408
Score = 30.4 bits (67), Expect = 9.2
Identities = 18/59 (30%), Positives = 26/59 (43%)
Query: 188 NDRGDRWRG*RQQGNRYKGDR*QDDRRRDDRRRTPTSDKKETLATRKKGSEETFNKDLE 246
+D GD R Q +R++G R ++D DD + SD + R EE D E
Sbjct: 382 DDEGDSTESDRHQAHRHRGHREEEDEDDDDEGDSTESDHHQAHRHRGHREEEDEEDDDE 440
>INCE_HUMAN (Q9NQS7) Inner centromere protein
Length = 919
Score = 33.9 bits (76), Expect = 0.83
Identities = 39/188 (20%), Positives = 82/188 (42%), Gaps = 12/188 (6%)
Query: 56 IQRAPVGQGKSKAIRETIQRRDKKIKSGERTAKEPLYPRKESFERRRPWHQTDSRRQEES 115
++R V + K + + E +R+++++ + A+E + KE E+++ Q ++ E++
Sbjct: 550 LRRQKVEEDKRRRLEEVKLKREERLRKVLQ-ARERVEQMKE--EKKKQIEQKFAQIDEKT 606
Query: 116 GKSLNAHLTELLRKVKAT----HVVEAGEKETDPPRVVVDKTKWCEYHRSAGYDTGDCFT 171
K+ L E K KA VEA K+ + R + +W +
Sbjct: 607 EKAKEERLAEEKAKKKAAAKKMEEVEARRKQEEDAR----RLRWLQQEEEERRHQELLQK 662
Query: 172 LKNEIERLIRAGRSQLNDRGDRWRG*RQQGNRYKGDR*QDDRRRDDRRRTPTSDKKETLA 231
K E + +R R + R+Q R + +R + +RR +RR +++ LA
Sbjct: 663 KKEEEQERLRKAAEAKRLAEQREQERREQERREQ-ERREQERREQERREQERREQERQLA 721
Query: 232 TRKKGSEE 239
+++ E+
Sbjct: 722 EQERRREQ 729
>IF2_PHOLL (Q7MYY7) Translation initiation factor IF-2
Length = 909
Score = 33.5 bits (75), Expect = 1.1
Identities = 44/218 (20%), Positives = 88/218 (40%), Gaps = 28/218 (12%)
Query: 45 EQEQASCDRGLIQRAPVGQGKSKAIRETIQRRDKKIKSGERTAKEPLYPRKESFERRRPW 104
++E + + L++ + + KA RE ++ ++ E+ + +++ + +
Sbjct: 127 QREAEAAAKKLVEEQAKREAEEKAKREAAEKAKRQAAESEKVTNQHTEHKQKPAQTDKTI 186
Query: 105 HQTDSRRQEESGKSLNAHLTELLRKV--KATHVVEAGEKETDPPRVVVDKTKWCEYHRSA 162
+RR+ E+ E+ RKV +A V E + + ++ KW S+
Sbjct: 187 QSEKARREAEAADLKRKAEEEMRRKVEEEAKRVAEEARRMAEE-----NQDKW-----SS 236
Query: 163 GYDTGDCFTLKNEIERLIRAGRSQLND---RGDRWRG*RQQGNRYKGDR*QDDRRRDDRR 219
D+ D R RA + ND GDR R +G K R ++++++
Sbjct: 237 DSDSIDSDDYHVTTSRHARAAEDE-NDAKVEGDR----RARGRSGKATR----QKKNNKH 287
Query: 220 RTPTSDKKETLAT-RKKGSE---ETFNKDLEPPVGTIN 253
+D++E A R KG + T + PV +N
Sbjct: 288 SESKADREEARAVGRTKGKQRKTSTLQQSFNKPVAAVN 325
>YAP1_YEAST (P19880) AP-1 like transcription factor YAP1
(Phenanthroline resistance protein PAR1) (Pleiotropic
drug resistance protein PDR4)
Length = 650
Score = 33.1 bits (74), Expect = 1.4
Identities = 14/44 (31%), Positives = 28/44 (62%)
Query: 204 YKGDR*QDDRRRDDRRRTPTSDKKETLATRKKGSEETFNKDLEP 247
++G + + D ++ RRT T D +++ +KKGS+ + +DL+P
Sbjct: 21 FEGSKSRHDEIENEHRRTGTRDGEDSEQPKKKGSKTSKKQDLDP 64
>ADFP_HUMAN (Q99541) Adipophilin (Adipose differentiation-related
protein) (ADRP)
Length = 437
Score = 33.1 bits (74), Expect = 1.4
Identities = 31/109 (28%), Positives = 44/109 (39%), Gaps = 17/109 (15%)
Query: 71 ETIQRRDKKIKSGERTAKEPLYPRKESFERR---RPWHQTDSRRQEESGKSLNA------ 121
E +++ KK++ + K Y R S + R + Q SR +E KS
Sbjct: 196 EELEKEAKKVEGFDLVQKPSYYVRLGSLSTKLHSRAYQQALSRVKEAKQKSQQTISQLHS 255
Query: 122 --HLTELLRKVKATHVVEAGEKETDPPRVVVDKTKWCEYHRSAGYDTGD 168
HL E RK +V A +K D + W E+ RS GYD D
Sbjct: 256 TVHLIEFARK----NVYSANQKIQDAQDKLY--LSWVEWKRSIGYDDTD 298
>ACIN_MOUSE (Q9JIX8) Apoptotic chromatin condensation inducer in the
nucleus (Acinus)
Length = 1338
Score = 33.1 bits (74), Expect = 1.4
Identities = 41/198 (20%), Positives = 79/198 (39%), Gaps = 29/198 (14%)
Query: 65 KSKAIRETIQRRDKKIKSGERTAKEPLYPRKESFERRRPWHQTDSRRQEESGKSLNAH-- 122
+ +A+RE R+++++ ERT E + R + E R ++ RR++E KS
Sbjct: 1137 QERAVREQWAEREREMERRERTRSEREWDRDKVREGPRSRSRSRDRRRKERAKSKEKKSE 1196
Query: 123 -------------LTELLRKVKA-----------THVVEAGEKETDPPRVVVDKTKWCEY 158
L +L RK KA + +V+ ++ + + + K E
Sbjct: 1197 KKEKAQEEPPAKLLDDLFRKTKAAPCIYWLPLTESQIVQKEAEQAERAKEREKRRKEREE 1256
Query: 159 HRSAGYDTGDCFTLKNEIERLIRAGRSQLNDRG---DRWRG*RQQGNRYKGDR*QDDRRR 215
+ ++ER R S+ +R +R RG R++ DR ++ RR
Sbjct: 1257 EEQKEREKEAERERNRQLEREKRREHSRERERDRERERDRGDRERERERDRDRGRERDRR 1316
Query: 216 DDRRRTPTSDKKETLATR 233
D +R + + + + R
Sbjct: 1317 DTKRHSRSRSRSTPVRDR 1334
>LAD1_MOUSE (P57016) Ladinin 1 (Lad-1) (Linear IgA disease
autoantigen)
Length = 528
Score = 32.7 bits (73), Expect = 1.9
Identities = 30/137 (21%), Positives = 57/137 (40%), Gaps = 14/137 (10%)
Query: 57 QRAPVGQGKSKAIRETIQRRDKKIKSG-ERTAKEPLYPRKE---------SFERRRPWHQ 106
QR V + ++E + +++ G E+T+ +PL P+K+ S E+R PW Q
Sbjct: 95 QRRQVVEAVQAPVQERPEAEEERDSLGPEQTSSQPLVPKKKVEALPRRRLSREQRGPWAQ 154
Query: 107 TDSR---RQEESGKSLNAHLTELLRKVKATHVVEAGEKETDPPRVVVDKTKWCEYHRSAG 163
+ R R+ G+ T +K + EK P + +V + K C +
Sbjct: 155 DEERLKNRELAEGEKRLPEETVAQQKTLVSEKTPVSEKTPVPAKRLVSE-KACPSEKGTA 213
Query: 164 YDTGDCFTLKNEIERLI 180
+ ++ E+L+
Sbjct: 214 TEKASLTEKRHSPEKLV 230
>CAFA_MOUSE (Q9QWF0) Chromatin assembly factor 1 subunit A (CAF-1
subunit A) (Chromatin assembly factor I p150 subunit)
(CAF-I 150 kDa subunit) (CAF-Ip150)
Length = 911
Score = 32.7 bits (73), Expect = 1.9
Identities = 22/69 (31%), Positives = 36/69 (51%), Gaps = 2/69 (2%)
Query: 63 QGKSKAIRETIQRRDKKIKSGE--RTAKEPLYPRKESFERRRPWHQTDSRRQEESGKSLN 120
+G+SK R+ Q+R++K K E R AKE +KE + + + + R ++E K+
Sbjct: 313 KGRSKLHRDREQQREEKEKLREEIRRAKEEARKKKEEEKELKEKERREKREKDEKEKAEK 372
Query: 121 AHLTELLRK 129
L E RK
Sbjct: 373 QRLKEEKRK 381
>GAG_MLVRD (P11269) Gag polyprotein [Contains: Core protein p15;
Inner coat protein p12; Core shell protein p30;
Nucleoprotein p10]
Length = 537
Score = 32.3 bits (72), Expect = 2.4
Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
Query: 65 KSKAIRETIQRRDKKIKSGERTAKEPLYPRKESFERRRPWHQTDSRRQEESGKSLNAHLT 124
KSK +R+ ++ +K E + R+E+ E D +R++E + ++
Sbjct: 415 KSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERRRAEDEQREKERDRRRQREMS 474
Query: 125 ELLRKVKATHVVEAGEKETDPPRVVVDKTKWCEYHRSAGYDTGDC 169
+LL V + E P++ D+ C Y + G+ DC
Sbjct: 475 KLLATVVTGQRQDRQGGERKRPQLDKDQ---CAYCKEKGHWAKDC 516
>SE11_MOUSE (Q8C1B7) Septin 11
Length = 431
Score = 32.0 bits (71), Expect = 3.2
Identities = 19/92 (20%), Positives = 46/92 (49%), Gaps = 3/92 (3%)
Query: 63 QGKSKAIRETIQRRDKKIKSGERTAKEPLYPRKESFERRRPWHQTDSRRQEESGKSLNAH 122
Q K + +R+ R K+ ++ + A++ L+ E F+ + HQ + ++ E+ K L
Sbjct: 335 QKKEEEMRQMFVMRVKEKEAELKEAEKELH---EKFDLLKRTHQEEKKKVEDKKKELEEE 391
Query: 123 LTELLRKVKATHVVEAGEKETDPPRVVVDKTK 154
++ +K A ++++ +++ + DK K
Sbjct: 392 VSNFQKKKAAAQLLQSQAQQSGAQQTKKDKDK 423
>IF3A_HUMAN (Q14152) Eukaryotic translation initiation factor 3
subunit 10 (eIF-3 theta) (eIF3 p167) (eIF3 p180) (eIF3
p185) (eIF3a)
Length = 1382
Score = 32.0 bits (71), Expect = 3.2
Identities = 52/221 (23%), Positives = 85/221 (37%), Gaps = 34/221 (15%)
Query: 85 RTAKEPLYPRKESFERRRPWHQTD----SRRQEES------GKSLNAHLTELLRKVKATH 134
R A + PR+ + + R PW D SRR ++ S L++
Sbjct: 1121 RNADDDRIPRRGAEDDRGPWRNMDDDRLSRRADDDRFPRRGDDSRPGPWRPLVKPGGWRE 1180
Query: 135 VVEAGEKETDPPRVVVDKTKWCEYHRSAGYDTGDCFTLKNEIERLIRAGRSQLNDRGDRW 194
+A E+ PPR + E+ R D + +N+ + R + DR DR+
Sbjct: 1181 KEKAREESWGPPRESRPSEER-EWDREKERDRDNQDREENDKDPERERDRERDVDREDRF 1239
Query: 195 RG*RQQGNRYKGDR*Q----------DDRRRDDRRRTPTSDKKETLATRKKGSEETFNKD 244
R R +G +G + DDR RDDRRR D + L R+ ++ +
Sbjct: 1240 RRPRDEGGWRRGPAEESSSWRDSSRRDDRDRDDRRR--ERDDRRDLRERRDLRDDRDRRG 1297
Query: 245 LEPPVGTINTIAGGFGGGGDIASTRRRNVRAVTSVREYEAP 285
PP+ + +++S RR + R V E + P
Sbjct: 1298 --PPLRSERE---------EVSSWRRADDRKDDRVEERDPP 1327
>GOA4_MOUSE (Q91VW5) Golgi autoantigen, golgin subfamily A member 4
(tGolgin-1)
Length = 2238
Score = 32.0 bits (71), Expect = 3.2
Identities = 44/192 (22%), Positives = 86/192 (43%), Gaps = 24/192 (12%)
Query: 60 PVGQGKSKAIRETIQRRDKKIKSGERTAKEPLYPRKES-----FERRRPWHQTDSRRQE- 113
PVG G S E +Q+R K+ ++ + KE + KE E+ Q D R QE
Sbjct: 291 PVGGGTSAKTLEMLQQRVKRQENLLQRCKETIGSHKEQCALLLSEKEALQEQLDERLQEL 350
Query: 114 ESGKSLN-AHLTELLRKVK-ATHVVEAGEKETDPPRVVVDKTKWCEYHRSAGYDTGDCFT 171
E K L+ A T+L+ +++ A +++E E++ +V+ +TK +
Sbjct: 351 EKMKELHMAEKTKLITQLRDAKNLIEQLEQDKG---MVITETK---------RQMLETLE 398
Query: 172 LKNEIERLIRAGRSQLNDRGDRWRG*RQQGNRYKGDR*Q----DDRRRDDRRRTPTSDKK 227
LK + +R+ Q+ +G+ R +++ R + + ++ +D +R +
Sbjct: 399 LKEDEIAQLRSHIKQMTTQGEELREQKEKSERAAFEELEKALSTAQKTEDAQRRMKMEMD 458
Query: 228 ETLATRKKGSEE 239
E + ++ SEE
Sbjct: 459 EQMKAVERASEE 470
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.327 0.143 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,388,660
Number of Sequences: 164201
Number of extensions: 2180421
Number of successful extensions: 6993
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 6911
Number of HSP's gapped (non-prelim): 105
length of query: 431
length of database: 59,974,054
effective HSP length: 113
effective length of query: 318
effective length of database: 41,419,341
effective search space: 13171350438
effective search space used: 13171350438
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0134.17