BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0131.12
(78 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GRR2_HUMAN (Q96P88) Gonadotropin-releasing hormone II receptor (... 32 0.29
GRR2_CALJA (Q95MG6) Gonadotropin-releasing hormone II receptor (... 30 1.5
GRR2_MACMU (Q95JG1) Gonadotropin-releasing hormone II receptor (... 29 2.5
GRR2_CERAE (Q95MH6) Gonadotropin-releasing hormone II receptor (... 29 2.5
AN15_HUMAN (Q14678) Ankyrin repeat domain protein 15 (Kidney ank... 27 7.2
SYQ_HAEIN (P43831) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glu... 27 9.5
>GRR2_HUMAN (Q96P88) Gonadotropin-releasing hormone II receptor
(Type II GnRH receptor) (GnRH-II-R)
Length = 379
Score = 32.0 bits (71), Expect = 0.29
Identities = 23/66 (34%), Positives = 36/66 (53%), Gaps = 8/66 (12%)
Query: 7 LRRLF-----ASLLITNIMNNPDHVWNITWKLLANDIQHEYRGTLTQPGMIPTFSLSSKP 61
+RRLF A LL+T ++ D WNIT + LA DI TL ++ T+S + P
Sbjct: 75 VRRLFIHLAAADLLVTFVVMPLDATWNITVQWLAVDIACR---TLMFLKLMATYSAAFLP 131
Query: 62 ILLKID 67
+++ +D
Sbjct: 132 VVIGLD 137
>GRR2_CALJA (Q95MG6) Gonadotropin-releasing hormone II receptor
(Type II GnRH receptor) (GnRH-II-R)
Length = 380
Score = 29.6 bits (65), Expect = 1.5
Identities = 21/66 (31%), Positives = 35/66 (52%), Gaps = 8/66 (12%)
Query: 7 LRRLFA-----SLLITNIMNNPDHVWNITWKLLANDIQHEYRGTLTQPGMIPTFSLSSKP 61
+RRLFA LL+T ++ D WNIT + LA DI TL ++ ++ + P
Sbjct: 75 VRRLFAHLAAADLLVTFVVMPLDATWNITVQWLAGDIACR---TLMFLKLMAMYAAAFLP 131
Query: 62 ILLKID 67
+++ +D
Sbjct: 132 VVIGLD 137
>GRR2_MACMU (Q95JG1) Gonadotropin-releasing hormone II receptor
(Type II GnRH receptor) (GnRH-II-R)
Length = 379
Score = 28.9 bits (63), Expect = 2.5
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 12 ASLLITNIMNNPDHVWNITWKLLANDIQHEYRGTLTQPGMIPTFSLSSKPILLKID 67
A LL+T ++ D WNIT + LA DI TL ++ +S + P+++ +D
Sbjct: 85 ADLLVTFVVMPLDATWNITVQWLAEDIACR---TLMFLKLMAMYSAAFLPVVIGLD 137
>GRR2_CERAE (Q95MH6) Gonadotropin-releasing hormone II receptor
(Type II GnRH receptor) (GnRH-II-R)
Length = 379
Score = 28.9 bits (63), Expect = 2.5
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 12 ASLLITNIMNNPDHVWNITWKLLANDIQHEYRGTLTQPGMIPTFSLSSKPILLKID 67
A LL+T ++ D WNIT + LA DI TL ++ +S + P+++ +D
Sbjct: 85 ADLLVTFVVMPLDATWNITVQWLAGDIACR---TLMFLKLMAMYSAAFLPVVIGLD 137
>AN15_HUMAN (Q14678) Ankyrin repeat domain protein 15 (Kidney ankyrin
repeat-containing protein)
Length = 1194
Score = 27.3 bits (59), Expect = 7.2
Identities = 19/77 (24%), Positives = 32/77 (40%), Gaps = 8/77 (10%)
Query: 8 RRLFASLLITNIMNNPDHVWNITWKLLANDIQHEYRGTLTQPGMIP--------TFSLSS 59
+ L A L+ N +N+P + + + N +QHE+ +Q IP F S
Sbjct: 930 KMLSACNLLKNTINDPKALTSKDMRFCLNTLQHEWFRVSSQKSAIPAMVGDYIAAFEAIS 989
Query: 60 KPILLKIDNHLQSNGKS 76
+L + N NG +
Sbjct: 990 PDVLRYVINLADGNGNT 1006
>SYQ_HAEIN (P43831) Glutaminyl-tRNA synthetase (EC 6.1.1.18)
(Glutamine--tRNA ligase) (GlnRS)
Length = 557
Score = 26.9 bits (58), Expect = 9.5
Identities = 11/17 (64%), Positives = 13/17 (75%)
Query: 34 LANDIQHEYRGTLTQPG 50
L+ D EYRGTLT+PG
Sbjct: 133 LSPDEMREYRGTLTEPG 149
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.318 0.135 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,357,351
Number of Sequences: 164201
Number of extensions: 304456
Number of successful extensions: 594
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 590
Number of HSP's gapped (non-prelim): 6
length of query: 78
length of database: 59,974,054
effective HSP length: 54
effective length of query: 24
effective length of database: 51,107,200
effective search space: 1226572800
effective search space used: 1226572800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0131.12