BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0128.9
(1596 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 546 e-154
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 385 e-106
YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein 163 4e-39
M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810... 156 5e-37
YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B) 121 1e-26
YJZ9_YEAST (P47100) Transposon Ty1 protein B 117 3e-25
YMD9_YEAST (Q03434) Transposon Ty1 protein B 116 6e-25
YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein 116 6e-25
YME4_YEAST (Q04711) Transposon Ty1 protein B 115 1e-24
YMU0_YEAST (Q04670) Transposon Ty1 protein B 114 2e-24
YJZ7_YEAST (P47098) Transposon Ty1 protein B 114 2e-24
YMT5_YEAST (Q04214) Transposon Ty1 protein B 114 3e-24
M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820... 97 3e-19
M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240... 69 8e-11
POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.2... 63 6e-09
POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.2... 60 6e-08
M710_ARATH (P92512) Hypothetical mitochondrial protein AtMg00710... 58 2e-07
POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse transcript... 57 3e-07
POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.2... 56 7e-07
POL_MLVAK (P03357) Pol polyprotein [Contains: Reverse transcript... 56 7e-07
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 546 bits (1408), Expect = e-154
Identities = 345/1052 (32%), Positives = 561/1052 (52%), Gaps = 57/1052 (5%)
Query: 577 WYLDSGCSRHMTGEKRMFRELKLKPGGEVGFGGNEKGKIVGTGTICVDSSP----CIDNV 632
W +D+ S H T + +F G V G KI G G IC+ ++ + +V
Sbjct: 294 WVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDV 353
Query: 633 LLVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGS-VLFNSKRKNNIYKIR--LSE 689
V L NL+S L GY+ F + R GS V+ + +Y+ + +
Sbjct: 354 RHVPDLRMNLISGIALDRDGYESYFANQKWRLTK---GSLVIAKGVARGTLYRTNAEICQ 410
Query: 690 LEAQNVKCLLSVDEEQWVWHRRLGHASMRKISQLSKLNLVRGLPNLKFASDALCEACQKG 749
E + +SVD +WH+R+GH S + + L+K +L+ K + C+ C G
Sbjct: 411 GELNAAQDEISVD----LWHKRMGHMSEKGLQILAKKSLIS---YAKGTTVKPCDYCLFG 463
Query: 750 KFTKVPFKAKNVVSTSRPLELLHIDLFGPVKIESIGGKRYGMVIVDDYSRWTWVKFLTRK 809
K +V F+ + + L+L++ D+ GP++IES+GG +Y + +DD SR WV L K
Sbjct: 464 KQHRVSFQTSSERKLNI-LDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTK 522
Query: 810 DESHVVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTPQQN 869
D+ VF F A V+ E ++ R+RSD+GGE+ + +FE S+GI H+ + P TPQ N
Sbjct: 523 DQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHN 582
Query: 870 GVVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRISVRPILNKTPYELWKNIK 929
GV ER NRT+ E R+ML+ + K FW EAV TACY+ NR P+ + P +W N +
Sbjct: 583 GVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKE 642
Query: 930 PNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSERSKGFRFYNTDAKTIEESIHV 989
+ S+ FGC + K++ K D KS C+ +GY + G+R ++ K + S V
Sbjct: 643 VSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDV 702
Query: 990 RFDD---KLDSDQSKLVEK--------FADLSINVSDKGKAPEEVEPEEDEPEE--EAGP 1036
F + + +D S+ V+ S N + +EV + ++P E E G
Sbjct: 703 VFRESEVRTAADMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQGE 762
Query: 1037 SNSQTLKKSRITAAHPKELILGNKDEPVRTKSAFRPSEETLLSLKGLVSLIEPKSIDEAL 1096
+ +++ ++ + E R +S PS E +L + EP+S+ E L
Sbjct: 763 QLDEGVEEVEHPTQGEEQHQPLRRSERPRVESRRYPSTEYVL----ISDDREPESLKEVL 818
Query: 1097 Q--DKDWIL-AMEEELNQFSKNDVWSLVKKPESVLVIGTKWVFRNKLNEKGDVVRNKARL 1153
+K+ ++ AM+EE+ KN + LV+ P+ + KWVF+ K + +VR KARL
Sbjct: 819 SHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARL 878
Query: 1154 VAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYV 1213
V +G+ Q++GID+ E F+PV ++ +IR ++S + + ++ + Q+DVK+AFL+G + EE+Y+
Sbjct: 879 VVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYM 938
Query: 1214 HQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTY- 1272
QP GFE K V KL KSLYGLKQAPR WY + SF+ +++ D ++ K +
Sbjct: 939 EQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFS 998
Query: 1273 KDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFMGIQV--DQTPEGT 1330
+++ +I+ +YVDD++ ++ L + + F+M +G + +G+++ ++T
Sbjct: 999 ENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKL 1058
Query: 1331 YIHQSKYTKELLKKFNMLESTVAKTP----------MHPTCILEKEYKSGKVCQKLYRGM 1380
++ Q KY + +L++FNM + TP M PT + EK G + + Y
Sbjct: 1059 WLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEK----GNMAKVPYSSA 1114
Query: 1381 IGSLLY-LTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEY 1439
+GSL+Y + +RPDI +V + +RF +P + H AVK ILRYL+GTT L + S+
Sbjct: 1115 VGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCF-GGSDP 1173
Query: 1440 KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQ 1499
L GY DAD AGD RKS++G +SW SK Q +ALST EAEYI+A +
Sbjct: 1174 ILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKE 1233
Query: 1500 MLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKHHFIRDYVQKGVLL 1559
M+W+K L++ + + +YCD+ +AI LSKN + H+R KHI+V++H+IR+ V L
Sbjct: 1234 MIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLK 1293
Query: 1560 LKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 1591
+ + T+ AD+ TK + ++F + + M
Sbjct: 1294 VLKISTNENPADMLTKVVPRNKFELCKELVGM 1325
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 385 bits (988), Expect = e-106
Identities = 219/584 (37%), Positives = 339/584 (57%), Gaps = 33/584 (5%)
Query: 1027 EDEPEEEAGPSNSQTLKKSRITAAHPKEL------------ILGNKDEPVRTKSAFRPSE 1074
+D E G N ++S TA H KE+ I+ + E ++TK +E
Sbjct: 813 DDHLNESKGSGNPNESRESE-TAEHLKEIGIDNPTKNDGIEIINRRSERLKTKPQISYNE 871
Query: 1075 E------TLLSLKGLVSLIEPKSIDEALQDKD---WILAMEEELNQFSKNDVWSLVKKPE 1125
E +L+ + + + P S DE D W A+ ELN N+ W++ K+PE
Sbjct: 872 EDNSLNKVVLNAHTIFNDV-PNSFDEIQYRDDKSSWEEAINTELNAHKINNTWTITKRPE 930
Query: 1126 SVLVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISF 1185
+ ++ ++WVF K NE G+ +R KARLVA+G++Q+ IDY ETFAPVAR+ + R ++S
Sbjct: 931 NKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSL 990
Query: 1186 SVNHNIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAW 1245
+ +N+ +HQMDVK+AFLNG + EE+Y+ P G D+V KL K++YGLKQA R W
Sbjct: 991 VIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGISCNS--DNVCKLNKAIYGLKQAARCW 1048
Query: 1246 YERLSSFLLENEFVRGKVDTTLFC--KTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMM 1303
+E L E EFV VD ++ K ++ + V +YVDD++ + + + F +
Sbjct: 1049 FEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYL 1108
Query: 1304 QAEFEMSMMGELKYFMGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCIL 1363
+F M+ + E+K+F+GI+++ + Y+ QS Y K++L KFNM TP+ P+ I
Sbjct: 1109 MEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPL-PSKIN 1167
Query: 1364 EKEYKSGKVCQKLYRGMIGSLLY-LTASRPDILFSVHLCARFQSDPRETHLTAVKRILRY 1422
+ S + C R +IG L+Y + +RPD+ +V++ +R+ S +KR+LRY
Sbjct: 1168 YELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRY 1227
Query: 1423 LKGTTNLGLMYKK--TSEYKLSGYCDADYAGDRTERKSTSGNC-QFLGSNLVSWASKRQS 1479
LKGT ++ L++KK E K+ GY D+D+AG +RKST+G + NL+ W +KRQ+
Sbjct: 1228 LKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQN 1287
Query: 1480 TIALSTAEAEYISAAICSTQMLWMKHQLEDYQI-LESNIPIYCDNTAAISLSKNPILHSR 1538
++A S+ EAEY++ + LW+K L I LE+ I IY DN IS++ NP H R
Sbjct: 1288 SVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKR 1347
Query: 1539 AKHIEVKHHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRF 1582
AKHI++K+HF R+ VQ V+ L+++ T++Q ADIFTKPL RF
Sbjct: 1348 AKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARF 1391
Score = 181 bits (459), Expect = 1e-44
Identities = 122/411 (29%), Positives = 214/411 (51%), Gaps = 24/411 (5%)
Query: 579 LDSGCSRHMTGEKRMFRE-LKLKPGGEVGFGGNEKGKIV-----GTGTICVDSSPCIDNV 632
LDSG S H+ ++ ++ + +++ P ++ ++G+ + G + D +++V
Sbjct: 291 LDSGASDHLINDESLYTDSVEVVPPLKIAVA--KQGEFIYATKRGIVRLRNDHEITLEDV 348
Query: 633 LLVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELEA 692
L NL+S+ +L + G + F+ KS +S+ V+ NS NN+ I +A
Sbjct: 349 LFCKEAAGNLMSVKRLQEAGMSIEFD-KSGVTISKNGLMVVKNSGMLNNVPVINF---QA 404
Query: 693 QNVKCLLSVDEEQWVWHRRLGHASMRKISQLSKLNLVRG---LPNLKFASDALCEACQKG 749
++ + +WH R GH S K+ ++ + N+ L NL+ + + +CE C G
Sbjct: 405 YSINAKHKNNFR--LWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCE-ICEPCLNG 461
Query: 750 KFTKVPFKA-KNVVSTSRPLELLHIDLFGPVKIESIGGKRYGMVIVDDYSRWTWVKFLTR 808
K ++PFK K+ RPL ++H D+ GP+ ++ K Y ++ VD ++ + +
Sbjct: 462 KQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKY 521
Query: 809 KDESHVVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTPQQ 868
K + +F F+A+ + ++V + D+G E+ +++ GI++ + P TPQ
Sbjct: 522 KSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQL 581
Query: 869 NGVVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRISVRPIL--NKTPYELWK 926
NGV ER RT+ E ARTM+ + K FW EAV TA Y+ NRI R ++ +KTPYE+W
Sbjct: 582 NGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWH 641
Query: 927 NIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSERSKGFRFYN 977
N KP + + FG YV + K++ KFD KS K + +GY GF+ ++
Sbjct: 642 NKKPYLKHLRVFGATVYV-HIKNKQGKFDDKSFKSIFVGY--EPNGFKLWD 689
>YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein
Length = 308
Score = 163 bits (412), Expect = 4e-39
Identities = 95/304 (31%), Positives = 161/304 (52%), Gaps = 7/304 (2%)
Query: 1196 MDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLE 1255
MDV +AFLN + E +YV QPPGF +E+ PD+V++L +YGLKQAP W E +++ L +
Sbjct: 1 MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60
Query: 1256 NEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGEL 1315
F R + + L+ ++ D + + +YVDD++ + + + + + + M +G++
Sbjct: 61 IGFCRHEGEHGLYFRSTSDGPIYIGVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120
Query: 1316 KYFMGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEYKSGKVCQK 1375
F+G+ + Q+ G + K + E K P C + +++ K
Sbjct: 121 DKFLGLNIHQSTNGDI--TLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLK 178
Query: 1376 ---LYRGMIGSLLY-LTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGL 1431
Y+ ++G LL+ RPDI + V L +RF +PR HL + +R+LRYL T ++ L
Sbjct: 179 DITPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCL 238
Query: 1432 MYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKR-QSTIALSTAEAEY 1490
Y+ S+ L+ YCDA + ST G L V+W+SK+ + I + + EAEY
Sbjct: 239 KYRSGSQVALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEY 298
Query: 1491 ISAA 1494
I+A+
Sbjct: 299 ITAS 302
>M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810
(ORF240b)
Length = 240
Score = 156 bits (394), Expect = 5e-37
Identities = 76/223 (34%), Positives = 130/223 (58%), Gaps = 3/223 (1%)
Query: 1281 IYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPEGTYIHQSKYTKE 1340
+YVDDI+ ++ +L + + F M +G + YF+GIQ+ P G ++ Q+KY ++
Sbjct: 5 LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64
Query: 1341 LLKKFNMLESTVAKTPMHPTCILEKEYKSGKVCQKL-YRGMIGSLLYLTASRPDILFSVH 1399
+L ML+ TP+ L + K +R ++G+L YLT +RPDI ++V+
Sbjct: 65 ILNNAGMLDCKPMSTPL--PLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVN 122
Query: 1400 LCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYKLSGYCDADYAGDRTERKST 1459
+ + +P +KR+LRY+KGT GL K S+ + +CD+D+AG + R+ST
Sbjct: 123 IVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRST 182
Query: 1460 SGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLW 1502
+G C FLG N++SW++KRQ T++ S+ E EY + A+ + ++ W
Sbjct: 183 TGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B)
Length = 1770
Score = 121 bits (304), Expect = 1e-26
Identities = 113/388 (29%), Positives = 180/388 (46%), Gaps = 36/388 (9%)
Query: 638 LTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKI--------RLSE 689
+ ++LLS+S+LA++ F + + + + DG+VL + + Y + +S+
Sbjct: 518 IAYDLLSLSELANQNITACFTRNT---LERSDGTVLAPIVKHGDFYWLSKKYLIPSHISK 574
Query: 690 LEAQNVKCLLSVDEEQW-VWHRRLGHASMRKISQLSKLNLVRGLPNLKF----ASDALCE 744
L NV SV++ + + HR LGHA+ R I + K N V L AS C
Sbjct: 575 LTINNVNKSKSVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCP 634
Query: 745 ACQKGKFTK---VPFKAKNVVSTSRPLELLHIDLFGPVKIESIGGKRYGMVIVDDYSRWT 801
C GK TK V + P + LH D+FGPV Y + D+ +R+
Sbjct: 635 DCLIGKSTKHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQ 694
Query: 802 WVKFL-TRKDESHV-VFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHD 859
WV L R++ES + VF++ +A ++N+ R++ ++ D G E+ N F + GI
Sbjct: 695 WVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITAC 754
Query: 860 FSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRISVRPILNK 919
++ + +GV ER NRTL RT+L +G+ H W AV + I+N + V P +K
Sbjct: 755 YTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSL-VSPKNDK 813
Query: 920 TPYELWKNIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGY----SERSKGFRF 975
+ + +I+ PFG V N H D+K + GY S S G+
Sbjct: 814 SARQHAGLAGLDITTILPFGQPVIVNN-----HNPDSKIHPRGIPGYALHPSRNSYGYII 868
Query: 976 YNTD-AKTIEESIHVRFDDKLDSDQSKL 1002
Y KT++ + +V DK QSKL
Sbjct: 869 YLPSLKKTVDTTNYVILQDK----QSKL 892
Score = 117 bits (292), Expect = 3e-25
Identities = 134/566 (23%), Positives = 258/566 (44%), Gaps = 63/566 (11%)
Query: 1062 EPVRTKSAFRPSEETLLSLKGLVSLIEPKSI---DEAL------QDKD-WILAMEEELNQ 1111
EP R+K + ++KG+ S+ ++ DEA+ ++KD ++ A +E++Q
Sbjct: 1220 EPPRSKKRIN----LIAAIKGVKSIKPVRTTLRYDEAITYNKDNKEKDRYVEAYHKEISQ 1275
Query: 1112 FSKNDVWSLVK-----KPESVLVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDY 1166
K + W K + VI + ++F N+K D +KAR VA+G Q
Sbjct: 1276 LLKMNTWDTNKYYDRNDIDPKKVINSMFIF----NKKRDGT-HKARFVARGDIQHPDTYD 1330
Query: 1167 TETFAPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPP--GFEDEKK 1224
++ + A+ +S +++++ + Q+D+ SA+L I EE+Y+ PP G D+
Sbjct: 1331 SDMQSNTVHHYALMTSLSIALDNDYYITQLDISSAYLYADIKEELYIRPPPHLGLNDK-- 1388
Query: 1225 PDHVFKLKKSLYGLKQAPRAWYERLSSFLL---ENEFVRGKVDTTLFCKTYKDDILIVQI 1281
+ +L+KSLYGLKQ+ WYE + S+L+ + + VRG + +K+ + + +
Sbjct: 1389 ---LLRLRKSLYGLKQSGANWYETIKSYLINCCDMQEVRG------WSCVFKNSQVTICL 1439
Query: 1282 YVDDIIFGSANQSLCKEFSEMMQAEFEMSMM------GELKY-FMGIQVD-QTPEGTYIH 1333
+VDD+I S + + K+ ++ +++ ++ E++Y +G+++ Q + +
Sbjct: 1440 FVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRSKYMKLG 1499
Query: 1334 QSKYTKELLKKFNMLESTVAK------TPMHPTCILEKEYKSGKVCQKLY--RGMIGSLL 1385
K E L K N+ + K P H E E + +K++ + +IG
Sbjct: 1500 MEKSLTEKLPKLNVPLNPKGKKLRAPGQPGHYIDQDELEIDEDEYKEKVHEMQKLIGLAS 1559
Query: 1386 YLTAS-RPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTS----EYK 1440
Y+ R D+L+ ++ A+ P L +++++ T + L++ K + K
Sbjct: 1560 YVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTKPDNK 1619
Query: 1441 LSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQM 1500
L DA Y G++ KS GN L ++ S + S ST EAE + + +
Sbjct: 1620 LVAISDASY-GNQPYYKSQIGNIFLLNGKVIGGKSTKASLTCTSTTEAEIHAVSEAIPLL 1678
Query: 1501 LWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHS-RAKHIEVKHHFIRDYVQKGVLL 1559
+ H +++ + D+ + IS+ K+ R + K +RD V L
Sbjct: 1679 NNLSHLVQELNKKPIIKGLLTDSRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLY 1738
Query: 1560 LKFVDTDHQWADIFTKPLAEDRFNFI 1585
+ +++T AD+ TKPL F +
Sbjct: 1739 VYYIETKKNIADVMTKPLPIKTFKLL 1764
>YJZ9_YEAST (P47100) Transposon Ty1 protein B
Length = 1755
Score = 117 bits (293), Expect = 3e-25
Identities = 140/563 (24%), Positives = 249/563 (43%), Gaps = 57/563 (10%)
Query: 1062 EPVRTKSAFR--PSEETLLSLKGLVSLI---EPKSIDEALQDKD-WILAMEEELNQFSKN 1115
EP R+K + + + S+K + + + E + ++ +++K+ +I A +E+NQ K
Sbjct: 1205 EPPRSKKRIHLIAAVKAVKSIKPIRTTLRYDEAITYNKDIKEKEKYIEAYHKEVNQLLKM 1264
Query: 1116 DVWSLV-----KKPESVLVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETF 1170
W K+ + VI + ++F N+K D +KAR VA+G Q +
Sbjct: 1265 KTWDTDEYYDRKEIDPKRVINSMFIF----NKKRDGT-HKARFVARGDIQHPDTYDSGMQ 1319
Query: 1171 APVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFK 1230
+ A+ +S ++++N + Q+D+ SA+L I EE+Y+ PP D + +
Sbjct: 1320 SNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHLGMN---DKLIR 1376
Query: 1231 LKKSLYGLKQAPRAWYERLSSFLLEN---EFVRGKVDTTLFCKTYKDDILIVQIYVDDII 1287
LKKSLYGLKQ+ WYE + S+L++ E VRG + +K+ + + ++VDD++
Sbjct: 1377 LKKSLYGLKQSGANWYETIKSYLIQQCGMEEVRG------WSCVFKNSQVTICLFVDDMV 1430
Query: 1288 FGSANQSLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPEGTYIHQSKYTKELLKKFNM 1347
S N + K E ++ +++ ++ + IQ D + KY K L N
Sbjct: 1431 LFSKNLNSNKRIIEKLKMQYDTKIINLGESDEEIQYDILGLEIKYQRGKYMK--LGMENS 1488
Query: 1348 LESTVAK--TPMHP----------------TCILEKEYKSGKVCQKLYRGMIGSLLYLTA 1389
L + K P++P LE E K+ + +IG Y+
Sbjct: 1489 LTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQELELEEDDYKMKVHEMQKLIGLASYVGY 1548
Query: 1390 S-RPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEY----KLSGY 1444
R D+L+ ++ A+ P + L +++++ T + L++ K+ KL
Sbjct: 1549 KFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRDKQLIWHKSKPVKPTNKLVVI 1608
Query: 1445 CDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEY--ISAAICSTQMLW 1502
DA Y G++ KS GN L ++ S + S ST EAE IS ++ L
Sbjct: 1609 SDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLS 1667
Query: 1503 MKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKHHFIRDYVQKGVLLLKF 1562
Q D + + + +T +I +S N R + K +RD V L + +
Sbjct: 1668 YLIQELDKKPITKGLLTDSKSTISIIISNNE-EKFRNRFFGTKAMRLRDEVSGNHLHVCY 1726
Query: 1563 VDTDHQWADIFTKPLAEDRFNFI 1585
++T AD+ TKPL F +
Sbjct: 1727 IETKKNIADVMTKPLPIKTFKLL 1749
Score = 98.6 bits (244), Expect = 1e-19
Identities = 125/558 (22%), Positives = 217/558 (38%), Gaps = 76/558 (13%)
Query: 579 LDSGCSRHMTGEKRMFRELKLKPGGEVGFGGNEKGKIVGTGTICV---DSSPCIDNVLLV 635
LDSG SR + P V I G + D++ VL
Sbjct: 460 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 519
Query: 636 DGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELEAQNV 695
+ ++LLS+++LA F + + + DG+VL + + Y + L N+
Sbjct: 520 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLLPSNI 576
Query: 696 KCLL------SVDEEQWVW---HRRLGHASMRKISQLSKLNLVRGLP----NLKFASDAL 742
S ++ + HR L HA+ + I K N + + A D
Sbjct: 577 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQ 636
Query: 743 CEACQKGKFTK---VPFKAKNVVSTSRPLELLHIDLFGPVKIESIGGKRYGMVIVDDYSR 799
C C GK TK + ++ P + LH D+FGPV Y + D+ ++
Sbjct: 637 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 696
Query: 800 WTWVKFLTRKDESHV--VFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIA 857
+ WV L + E + VF+T +A ++N+ ++ ++ D G E+ N + GI
Sbjct: 697 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 756
Query: 858 HDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRIS----- 912
++ + +GV ER NRTL + RT LQ +G+ H W A+ + ++N ++
Sbjct: 757 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 816
Query: 913 -------------VRPILNKTPYELWKNIKPNISYFHPFGCVCYVLNTK----------D 949
+ +L + + PN S HP G Y L+
Sbjct: 817 KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN-SKIHPRGIPGYALHPSRNSYGYIIYLP 875
Query: 950 RLHKFDAKSSKCLLLGYSERSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSKLVEKFADL 1009
L K ++ +L G R F N DA T +E ++ S +++ DL
Sbjct: 876 SLKKTVDTTNYVILQGKESRLDQF---NYDALTFDEDLNRLTASYQSFIASNEIQQSDDL 932
Query: 1010 SINVSDKGKAPEEVEPEED--------EPEEEAGPS----NSQTLKKSRITAAHPKELIL 1057
+I ++ E+ PE+ P + PS +S+ + K+ I A P+E+
Sbjct: 933 NIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRA--PREV-- 988
Query: 1058 GNKDEPVRTKSAFRPSEE 1075
+P ++S PS++
Sbjct: 989 ----DPNISESNILPSKK 1002
>YMD9_YEAST (Q03434) Transposon Ty1 protein B
Length = 1328
Score = 116 bits (290), Expect = 6e-25
Identities = 141/568 (24%), Positives = 255/568 (44%), Gaps = 67/568 (11%)
Query: 1062 EPVRTKSAFR--PSEETLLSLKGLVSLI---EPKSIDEALQDKD-WILAMEEELNQFSKN 1115
EP R+K + + + S+K + + + E + ++ +++K+ +I A +E+NQ K
Sbjct: 778 EPPRSKKRIHLIAAVKAVKSIKPIRTTLRYDEAITYNKDIKEKEKYIEAYHKEVNQLLKM 837
Query: 1116 DVWSLV-----KKPESVLVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETF 1170
W K+ + VI + ++F N+K D +KAR VA+G Q +
Sbjct: 838 KTWDTDEYYDRKEIDPKRVINSMFIF----NKKRDGT-HKARFVARGDIQHPDTYDSGMQ 892
Query: 1171 APVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFK 1230
+ A+ +S ++++N + Q+D+ SA+L I EE+Y+ PP D + +
Sbjct: 893 SNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHLGMN---DKLIR 949
Query: 1231 LKKSLYGLKQAPRAWYERLSSFLLEN---EFVRGKVDTTLFCKTYKDDILIVQIYVDDII 1287
LKKSLYGLKQ+ WYE + S+L++ E VRG + +K+ + + ++VDD+I
Sbjct: 950 LKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRG------WSCVFKNSQVTICLFVDDMI 1003
Query: 1288 FGSANQSLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPEGTYIHQSKYTKELLKKFNM 1347
S + + K+ ++ +++ ++ + IQ D + KY K L N
Sbjct: 1004 LFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRGKYMK--LGMENS 1061
Query: 1348 LESTVAK--TPMHPTC-------------------ILEKEYKSGKVCQKLYRGMIGSLLY 1386
L + K P++P I E EYK KV + + +IG Y
Sbjct: 1062 LTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKE-KVHE--MQKLIGLASY 1118
Query: 1387 LTAS-RPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTS----EYKL 1441
+ R D+L+ ++ A+ P L +++++ T + L++ K + KL
Sbjct: 1119 VGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTEPDNKL 1178
Query: 1442 SGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEY--ISAAI-CST 1498
DA Y G++ KS GN L ++ S + S ST EAE IS ++
Sbjct: 1179 VAISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLN 1237
Query: 1499 QMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHS-RAKHIEVKHHFIRDYVQKGV 1557
+ ++ +L I++ + D+ + IS+ K+ R + K +RD V
Sbjct: 1238 NLSYLIQELNKKPIIKG---LLTDSRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNN 1294
Query: 1558 LLLKFVDTDHQWADIFTKPLAEDRFNFI 1585
L + +++T AD+ TKPL F +
Sbjct: 1295 LYVYYIETKKNIADVMTKPLPIKTFKLL 1322
Score = 98.6 bits (244), Expect = 1e-19
Identities = 125/558 (22%), Positives = 217/558 (38%), Gaps = 76/558 (13%)
Query: 579 LDSGCSRHMTGEKRMFRELKLKPGGEVGFGGNEKGKIVGTGTICV---DSSPCIDNVLLV 635
LDSG SR + P V I G + D++ VL
Sbjct: 33 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 92
Query: 636 DGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELEAQNV 695
+ ++LLS+++LA F + + + DG+VL + + Y + L N+
Sbjct: 93 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLLPSNI 149
Query: 696 KCLL------SVDEEQWVW---HRRLGHASMRKISQLSKLNLVRGLP----NLKFASDAL 742
S ++ + HR L HA+ + I K N + + A D
Sbjct: 150 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDRSSAIDYQ 209
Query: 743 CEACQKGKFTK---VPFKAKNVVSTSRPLELLHIDLFGPVKIESIGGKRYGMVIVDDYSR 799
C C GK TK + ++ P + LH D+FGPV Y + D+ ++
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 269
Query: 800 WTWVKFLTRKDESHV--VFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIA 857
+ WV L + E + VF+T +A ++N+ ++ ++ D G E+ N + GI
Sbjct: 270 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 329
Query: 858 HDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRIS----- 912
++ + +GV ER NRTL + RT LQ +G+ H W A+ + ++N ++
Sbjct: 330 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 389
Query: 913 -------------VRPILNKTPYELWKNIKPNISYFHPFGCVCYVLNTK----------D 949
+ +L + + PN S HP G Y L+
Sbjct: 390 KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN-SKIHPRGIPGYALHPSRNSYGYIIYLP 448
Query: 950 RLHKFDAKSSKCLLLGYSERSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSKLVEKFADL 1009
L K ++ +L G R F N DA T +E ++ S +++ DL
Sbjct: 449 SLKKTVDTTNYVILQGKESRLDQF---NYDALTFDEDLNRLTASYQSFIASNEIQQSDDL 505
Query: 1010 SINVSDKGKAPEEVEPEED--------EPEEEAGPS----NSQTLKKSRITAAHPKELIL 1057
+I ++ E+ PE+ P + PS +S+ + K+ I A P+E+
Sbjct: 506 NIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRA--PREV-- 561
Query: 1058 GNKDEPVRTKSAFRPSEE 1075
+P ++S PS++
Sbjct: 562 ----DPNISESNILPSKK 575
>YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein
Length = 1803
Score = 116 bits (290), Expect = 6e-25
Identities = 148/615 (24%), Positives = 262/615 (42%), Gaps = 96/615 (15%)
Query: 1015 DKGKAPEEVEPEEDEPEEEAG-----PSNSQTLKKSRITAAHPKELILGNKDEPVRTKSA 1069
DK + E E D+ + P N +T+ +I A + E I N D ++ K
Sbjct: 1231 DKNNSLTSYELERDKKRSKKNRVKLIPDNMETVSAPKIRAIYYNEAISKNPD--LKEKHE 1288
Query: 1070 FRPSEETLLSLKGLVSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPESVLV 1129
++ + K L +L + K D ++ +S++++ P++ L+
Sbjct: 1289 YKQAYH-----KELQNLKDMKVFDVDVK--------------YSRSEI------PDN-LI 1322
Query: 1130 IGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNH 1189
+ T +F K N KAR+V +G +Q Y+ I++ + + N
Sbjct: 1323 VPTNTIFTKKRNGI-----YKARIVCRGDTQSPDT-YSVITTESLNHNHIKIFLMIANNR 1376
Query: 1190 NIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERL 1249
N+ + +D+ AFL + EE+Y+ P D + V KL K+LYGLKQ+P+ W + L
Sbjct: 1377 NMFMKTLDINHAFLYAKLEEEIYIPHP---HDRRC---VVKLNKALYGLKQSPKEWNDHL 1430
Query: 1250 SSFL-----LENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQ 1304
+L +N + G T +D L++ +YVDD + ++N+ EF ++
Sbjct: 1431 RQYLNGIGLKDNSYTPGLYQT-------EDKNLMIAVYVDDCVIAASNEQRLDEFINKLK 1483
Query: 1305 AEFEMSMMGEL------KYFMGIQ---------VDQTPEGTYIHQSKYTKELLKKFNMLE 1349
+ FE+ + G L +G+ +D T + K E LKK
Sbjct: 1484 SNFELKITGTLIDDVLDTDILGMDLVYNKRLGTIDLTLKSFINRMDKKYNEELKKIRKSS 1543
Query: 1350 ----STVAKTPMHPTCIL-EKEYKSGKVCQKLYRGMIGSLLYLTAS-RPDILFSVHLCAR 1403
ST P + E+E++ G + KL + ++G L Y+ R DI F+V AR
Sbjct: 1544 IPHMSTYKIDPKKDVLQMSEEEFRQGVL--KLQQ-LLGELNYVRHKCRYDIEFAVKKVAR 1600
Query: 1404 FQSDPRETHLTAVKRILRYLKGTTNLGLMYKK--TSEYKLSGYCDADYAGDRTERKSTSG 1461
+ P E + +I++YL ++G+ Y + + K+ DA G + +S G
Sbjct: 1601 LVNYPHERVFYMIYKIIQYLVRYKDIGIHYDRDCNKDKKVIAITDAS-VGSEYDAQSRIG 1659
Query: 1462 NCQFLGSNLVSWASKRQSTIALSTAEAE----YISAAICSTQMLWMKHQLEDYQILESNI 1517
+ G N+ + S + + +S+ EAE Y A T + +K E ++I
Sbjct: 1660 VILWYGMNIFNVYSNKSTNRCVSSTEAELHAIYEGYADSETLKVTLKELGEGDN---NDI 1716
Query: 1518 PIYCDNTAAISLSKNPILHSRAKHIEVKHHFIRDYV-QKGVLLLKFVDTDHQWADIFTKP 1576
+ D+ AI + K +K I++ + +K + LLK + AD+ TKP
Sbjct: 1717 VMITDSKPAIQGLNRSYQQPKEKFTWIKTEIIKEKIKEKSIKLLKITGKGNI-ADLLTKP 1775
Query: 1577 LAED---RFNFILKN 1588
++ RF +LKN
Sbjct: 1776 VSASDFKRFIQVLKN 1790
Score = 88.2 bits (217), Expect = 2e-16
Identities = 71/276 (25%), Positives = 122/276 (43%), Gaps = 11/276 (3%)
Query: 709 HRRLGHASMRKISQLSKLN-LVRGLPNLKFASDALCEACQKGKFTK---VPFKAKNVVST 764
H+R+GH +++I K N L +K ++ C+ C+ K TK N +
Sbjct: 562 HKRMGHTGIQQIENSIKHNHYEESLDLIKEPNEFWCQTCKISKATKRNHYTGSMNNHSTD 621
Query: 765 SRPLELLHIDLFGPVKIESIGGKRYGMVIVDDYSRWTWVKFLTRKDESHVVFSTF--IAQ 822
P +D+FGPV + KRY +++VD+ +R+ K+ ++ I
Sbjct: 622 HEPGSSWCMDIFGPVSSSNADTKRYMLIMVDNNTRYCMTSTHFNKNAETILAQVRKNIQY 681
Query: 823 VQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTPQQNGVVERKNRTLQEM 882
V+ + ++ + SD G EF ND+ E F S GI H + + NG ER RT+
Sbjct: 682 VETQFDRKVREINSDRGTEFTNDQIEEYFISKGIHHILTSTQDHAANGRAERYIRTIITD 741
Query: 883 ARTMLQETGMAKHFWAEAVNTACYIQNRISVRPILNKTPYELWKN--IKPNISYFHPFGC 940
A T+L+++ + FW AV +A I+N + + K P + + + F PFG
Sbjct: 742 ATTLLRQSNLRVKFWEYAVTSATNIRNYLEHKS-TGKLPLKAISRQPVTVRLMSFLPFGE 800
Query: 941 VCYVLNTKDRLHKFDAKSSKCLLLGYSERSKGFRFY 976
+ N + K ++L S G++F+
Sbjct: 801 KGIIWNHNHK--KLKPSGLPSIILCKDPNSYGYKFF 834
>YME4_YEAST (Q04711) Transposon Ty1 protein B
Length = 1328
Score = 115 bits (288), Expect = 1e-24
Identities = 136/565 (24%), Positives = 249/565 (44%), Gaps = 61/565 (10%)
Query: 1062 EPVRTKSAFR--PSEETLLSLKGLVSLI---EPKSIDEALQDKD-WILAMEEELNQFSKN 1115
EP R+K + + + S+K + + + E + ++ +++K+ +I A +E+NQ K
Sbjct: 778 EPPRSKKRIHLIAAVKAVKSIKPIRTTLRYDEAITYNKDIKEKEKYIEAYHKEVNQLLKM 837
Query: 1116 DVWSLVK-----KPESVLVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETF 1170
+ W K + + VI + ++F K + +KAR VA+G Q +
Sbjct: 838 NTWDTDKYYDRKEIDPKRVINSMFIFNRKRDGT-----HKARFVARGDIQHPDTYDSGMQ 892
Query: 1171 APVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFK 1230
+ A+ +S ++++N + Q+D+ SA+L I EE+Y+ PP D + +
Sbjct: 893 SNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHLGMN---DKLIR 949
Query: 1231 LKKSLYGLKQAPRAWYERLSSFLLEN---EFVRGKVDTTLFCKTYKDDILIVQIYVDDII 1287
LKKSLYGLKQ+ WYE + S+L++ E VRG + +K+ + + ++VDD+I
Sbjct: 950 LKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRG------WSCVFKNSQVTICLFVDDMI 1003
Query: 1288 FGSANQSLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPEGTYIHQSKYTKELLKKFNM 1347
S + + K+ ++ +++ ++ + IQ D + KY K L N
Sbjct: 1004 LFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRGKYMK--LGMENS 1061
Query: 1348 LESTVAK--TPMHPTC-------------------ILEKEYKSGKVCQKLYRGMIGSLLY 1386
L + K P++P I E EYK KV + + +IG Y
Sbjct: 1062 LTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKE-KVHE--MQKLIGLASY 1118
Query: 1387 LTAS-RPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTS----EYKL 1441
+ R D+L+ ++ A+ P L +++++ T + L++ K + KL
Sbjct: 1119 VGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTEPDNKL 1178
Query: 1442 SGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQML 1501
DA Y G++ KS GN L ++ S + S ST EAE + + +
Sbjct: 1179 VAISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLN 1237
Query: 1502 WMKHQLEDYQILESNIPIYCDNTAAIS-LSKNPILHSRAKHIEVKHHFIRDYVQKGVLLL 1560
+ H +++ + D+ + IS + N R + K +RD V L +
Sbjct: 1238 NLSHLVQELNKKPITKGLLTDSKSTISIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHV 1297
Query: 1561 KFVDTDHQWADIFTKPLAEDRFNFI 1585
+++T AD+ TKPL F +
Sbjct: 1298 CYIETKKNIADVMTKPLPIKTFKLL 1322
Score = 98.6 bits (244), Expect = 1e-19
Identities = 125/558 (22%), Positives = 217/558 (38%), Gaps = 76/558 (13%)
Query: 579 LDSGCSRHMTGEKRMFRELKLKPGGEVGFGGNEKGKIVGTGTICV---DSSPCIDNVLLV 635
LDSG SR + P V I G + D++ VL
Sbjct: 33 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 92
Query: 636 DGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELEAQNV 695
+ ++LLS+++LA F + + + DG+VL + + Y + L N+
Sbjct: 93 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLLPSNI 149
Query: 696 KCLL------SVDEEQWVW---HRRLGHASMRKISQLSKLNLVRGLP----NLKFASDAL 742
S ++ + HR L HA+ + I K N + + A D
Sbjct: 150 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQ 209
Query: 743 CEACQKGKFTK---VPFKAKNVVSTSRPLELLHIDLFGPVKIESIGGKRYGMVIVDDYSR 799
C C GK TK + ++ P + LH D+FGPV Y + D+ ++
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 269
Query: 800 WTWVKFLTRKDESHV--VFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIA 857
+ WV L + E + VF+T +A ++N+ ++ ++ D G E+ N + GI
Sbjct: 270 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 329
Query: 858 HDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRIS----- 912
++ + +GV ER NRTL + RT LQ +G+ H W A+ + ++N ++
Sbjct: 330 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 389
Query: 913 -------------VRPILNKTPYELWKNIKPNISYFHPFGCVCYVLNTK----------D 949
+ +L + + PN S HP G Y L+
Sbjct: 390 KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN-SKIHPRGIPGYALHPSRNSYGYIIYLP 448
Query: 950 RLHKFDAKSSKCLLLGYSERSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSKLVEKFADL 1009
L K ++ +L G R F N DA T +E ++ S +++ DL
Sbjct: 449 SLKKTVDTTNYVILQGKESRLDQF---NYDALTFDEDLNRLTASYQSFIASNEIQQSDDL 505
Query: 1010 SINVSDKGKAPEEVEPEED--------EPEEEAGPS----NSQTLKKSRITAAHPKELIL 1057
+I ++ E+ PE+ P + PS +S+ + K+ I A P+E+
Sbjct: 506 NIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRA--PREV-- 561
Query: 1058 GNKDEPVRTKSAFRPSEE 1075
+P ++S PS++
Sbjct: 562 ----DPNISESNILPSKK 575
>YMU0_YEAST (Q04670) Transposon Ty1 protein B
Length = 1328
Score = 114 bits (286), Expect = 2e-24
Identities = 135/567 (23%), Positives = 250/567 (43%), Gaps = 65/567 (11%)
Query: 1062 EPVRTKSAFR--PSEETLLSLKGLVSLI---EPKSIDEALQDKD-WILAMEEELNQFSKN 1115
EP R+K + + + S+K + + + E + ++ +++K+ +I A +E+NQ K
Sbjct: 778 EPPRSKKRIHLIAAVKAVKSIKPIRTTLRYDEAITYNKDIKEKEKYIQAYHKEVNQLLKM 837
Query: 1116 DVWSLV-----KKPESVLVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETF 1170
W K+ + VI + ++F K + +KAR VA+G I + +T+
Sbjct: 838 KTWDTDRYYDRKEIDPKRVINSMFIFNRKRDGT-----HKARFVARG-----DIQHPDTY 887
Query: 1171 APVARLE-----AIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDEKKP 1225
P + A+ +S ++++N + Q+D+ SA+L I EE+Y+ PP
Sbjct: 888 DPGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHLGMN--- 944
Query: 1226 DHVFKLKKSLYGLKQAPRAWYERLSSFLLEN---EFVRGKVDTTLFCKTYKDDILIVQIY 1282
D + +LKKSLYGLKQ+ WYE + S+L++ E VRG + +K+ + + ++
Sbjct: 945 DKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRG------WSCVFKNSQVTICLF 998
Query: 1283 VDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPEGTYIHQSKYTKELL 1342
VDD+I S + + K+ ++ +++ ++ + IQ D + KY K L
Sbjct: 999 VDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRGKYMK--L 1056
Query: 1343 KKFNMLESTVAK--TPMHP----------------TCILEKEYKSGKVCQKLYRGMIGSL 1384
N L + K P++P LE E K+ + +IG
Sbjct: 1057 GMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQELELEEDDYKMKVHEMQKLIGLA 1116
Query: 1385 LYLTAS-RPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEY---- 1439
Y+ R D+L+ ++ A+ P + L +++++ T + L++ K+
Sbjct: 1117 SYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRDKQLIWHKSKPVKPTN 1176
Query: 1440 KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQ 1499
KL DA Y G++ KS GN L ++ S + S ST EAE + +
Sbjct: 1177 KLVVISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPL 1235
Query: 1500 MLWMKHQLEDYQILESNIPIYCDNTAAIS-LSKNPILHSRAKHIEVKHHFIRDYVQKGVL 1558
+ + H +++ + D+ + IS + N R + K +RD V L
Sbjct: 1236 LNNLSHLVQELNKKPITKGLLTDSKSTISIIISNNEEKFRNRFFGTKAMRLRDEVSGNHL 1295
Query: 1559 LLKFVDTDHQWADIFTKPLAEDRFNFI 1585
+ +++T AD+ TKPL F +
Sbjct: 1296 HVCYIETKKNIADVMTKPLPIKTFKLL 1322
Score = 98.6 bits (244), Expect = 1e-19
Identities = 125/558 (22%), Positives = 217/558 (38%), Gaps = 76/558 (13%)
Query: 579 LDSGCSRHMTGEKRMFRELKLKPGGEVGFGGNEKGKIVGTGTICV---DSSPCIDNVLLV 635
LDSG SR + P V I G + D++ VL
Sbjct: 33 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 92
Query: 636 DGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELEAQNV 695
+ ++LLS+++LA F + + + DG+VL + + Y + L N+
Sbjct: 93 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLLPSNI 149
Query: 696 KCLL------SVDEEQWVW---HRRLGHASMRKISQLSKLNLVRGLP----NLKFASDAL 742
S ++ + HR L HA+ + I K N + + A D
Sbjct: 150 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQ 209
Query: 743 CEACQKGKFTK---VPFKAKNVVSTSRPLELLHIDLFGPVKIESIGGKRYGMVIVDDYSR 799
C C GK TK + ++ P + LH D+FGPV Y + D+ ++
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 269
Query: 800 WTWVKFLTRKDESHV--VFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIA 857
+ WV L + E + VF+T +A ++N+ ++ ++ D G E+ N + GI
Sbjct: 270 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 329
Query: 858 HDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRIS----- 912
++ + +GV ER NRTL + RT LQ +G+ H W A+ + ++N ++
Sbjct: 330 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 389
Query: 913 -------------VRPILNKTPYELWKNIKPNISYFHPFGCVCYVLNTK----------D 949
+ +L + + PN S HP G Y L+
Sbjct: 390 KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN-SKIHPRGIPGYALHPSRNSYGYIIYLP 448
Query: 950 RLHKFDAKSSKCLLLGYSERSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSKLVEKFADL 1009
L K ++ +L G R F N DA T +E ++ S +++ DL
Sbjct: 449 SLKKTVDTTNYVILQGKESRLDQF---NYDALTFDEDLNRLTASYQSFIASNEIQQSDDL 505
Query: 1010 SINVSDKGKAPEEVEPEED--------EPEEEAGPS----NSQTLKKSRITAAHPKELIL 1057
+I ++ E+ PE+ P + PS +S+ + K+ I A P+E+
Sbjct: 506 NIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRA--PREV-- 561
Query: 1058 GNKDEPVRTKSAFRPSEE 1075
+P ++S PS++
Sbjct: 562 ----DPNISESNILPSKK 575
>YJZ7_YEAST (P47098) Transposon Ty1 protein B
Length = 1755
Score = 114 bits (285), Expect = 2e-24
Identities = 141/568 (24%), Positives = 254/568 (43%), Gaps = 67/568 (11%)
Query: 1062 EPVRTKSAFR--PSEETLLSLKGLVSLI---EPKSIDEALQDKD-WILAMEEELNQFSKN 1115
EP R+K + + + S+K + + + E + ++ +++K+ +I A +E+NQ K
Sbjct: 1205 EPPRSKKRIHLIAAVKAVKSIKPIRTTLRYDEAITYNKDIKEKEKYIEAYHKEVNQLLKM 1264
Query: 1116 DVWSLV-----KKPESVLVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETF 1170
W K+ + VI + ++F N+K D +KAR VA+G Q T
Sbjct: 1265 KTWDTDEYYDRKEIDPKRVINSMFIF----NKKRDGT-HKARFVARGDIQHPDTYDTGMQ 1319
Query: 1171 APVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFK 1230
+ A+ +S ++++N + Q+D+ SA+L I EE+Y+ PP D + +
Sbjct: 1320 SNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHLGMN---DKLIR 1376
Query: 1231 LKKSLYGLKQAPRAWYERLSSFLLEN---EFVRGKVDTTLFCKTYKDDILIVQIYVDDII 1287
LKKS YGLKQ+ WYE + S+L++ E VRG + +K+ + + ++VDD+I
Sbjct: 1377 LKKSHYGLKQSGANWYETIKSYLIKQCGMEEVRG------WSCVFKNSQVTICLFVDDMI 1430
Query: 1288 FGSANQSLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPEGTYIHQSKYTKELLKKFNM 1347
S + + K+ ++ +++ ++ + IQ D + KY K L N
Sbjct: 1431 LFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRGKYMK--LGMENS 1488
Query: 1348 LESTVAK--TPMHPTC-------------------ILEKEYKSGKVCQKLYRGMIGSLLY 1386
L + K P++P I E EYK KV + + +IG Y
Sbjct: 1489 LTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKE-KVHE--MQKLIGLASY 1545
Query: 1387 LTAS-RPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTS----EYKL 1441
+ R D+L+ ++ A+ P L +++++ T + L++ K + KL
Sbjct: 1546 VGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTEPDNKL 1605
Query: 1442 SGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEY--ISAAI-CST 1498
DA Y G++ KS GN L ++ S + S ST EAE IS ++
Sbjct: 1606 VAISDASY-GNQPYYKSQIGNIFLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLN 1664
Query: 1499 QMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHS-RAKHIEVKHHFIRDYVQKGV 1557
+ ++ +L I++ + D+ + IS+ K+ R + K +RD V
Sbjct: 1665 NLSYLIQELNKKPIIKG---LLTDSRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNN 1721
Query: 1558 LLLKFVDTDHQWADIFTKPLAEDRFNFI 1585
L + +++T AD+ TKPL F +
Sbjct: 1722 LYVYYIETKKNIADVMTKPLPIKTFKLL 1749
Score = 98.2 bits (243), Expect = 2e-19
Identities = 126/558 (22%), Positives = 218/558 (38%), Gaps = 76/558 (13%)
Query: 579 LDSGCSRHMTGEKRMFRELKLKPGGEVGFGGNEKGKIVGTGTICV---DSSPCIDNVLLV 635
LDSG SR + P V I G + D++ VL
Sbjct: 460 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 519
Query: 636 DGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKI--------RL 687
+ ++LLS+++LA F + + + DG+VL + + Y + +
Sbjct: 520 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVQYGDFYWVSKRYLLPSNI 576
Query: 688 SELEAQNVKCLLSVDEEQWVW-HRRLGHASMRKISQLSKLNLVRGLP----NLKFASDAL 742
S NV S + + + HR L HA+ + I K N + + A D
Sbjct: 577 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQ 636
Query: 743 CEACQKGKFTK---VPFKAKNVVSTSRPLELLHIDLFGPVKIESIGGKRYGMVIVDDYSR 799
C C GK TK + ++ P + LH D+FGPV Y + D+ ++
Sbjct: 637 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 696
Query: 800 WTWVKFLTRKDESHV--VFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIA 857
+ WV L + E + VF+T +A ++N+ ++ ++ D G E+ N + GI
Sbjct: 697 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 756
Query: 858 HDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRIS----- 912
++ + +GV ER NRTL + RT LQ +G+ H W A+ + ++N ++
Sbjct: 757 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 816
Query: 913 -------------VRPILNKTPYELWKNIKPNISYFHPFGCVCYVLNTK----------D 949
+ +L + + PN S HP G Y L+
Sbjct: 817 KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN-SKIHPRGIPGYALHPSRNSYGYIIYLP 875
Query: 950 RLHKFDAKSSKCLLLGYSERSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSKLVEKFADL 1009
L K ++ +L G R F N DA T +E ++ S +++ DL
Sbjct: 876 SLKKTVDTTNYVILQGKESRLDQF---NYDALTFDEDLNRLTASYQSFIASNEIQESNDL 932
Query: 1010 SINVSDKGKAPEEVEPEED--------EPEEEAGPS----NSQTLKKSRITAAHPKELIL 1057
+I ++ E+ PE+ P + PS +S+ + K+ I A P+E+
Sbjct: 933 NIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRA--PREV-- 988
Query: 1058 GNKDEPVRTKSAFRPSEE 1075
+P ++S PS++
Sbjct: 989 ----DPNISESNILPSKK 1002
>YMT5_YEAST (Q04214) Transposon Ty1 protein B
Length = 1328
Score = 114 bits (284), Expect = 3e-24
Identities = 136/563 (24%), Positives = 247/563 (43%), Gaps = 57/563 (10%)
Query: 1062 EPVRTKSAFR--PSEETLLSLKGLVSLI---EPKSIDEALQDKD-WILAMEEELNQFSKN 1115
EP R+K + + + S+K + + + E + ++ +++K+ +I A +E+NQ K
Sbjct: 778 EPPRSKKRIHLIAAVKAVKSIKPIRTTLRYDEAITYNKDIKEKEKYIEAYHKEVNQLLKM 837
Query: 1116 DVWSLVK-----KPESVLVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETF 1170
W K + + VI + ++F K + +KAR VA+G Q +
Sbjct: 838 KTWDTDKYYDRKEIDPKRVINSMFIFNRKRDGT-----HKARFVARGDIQHPDTYDSGMQ 892
Query: 1171 APVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFK 1230
+ A+ +S ++++N + Q+D+ SA+L I EE+Y+ PP D + +
Sbjct: 893 SNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHLGMN---DKLIR 949
Query: 1231 LKKSLYGLKQAPRAWYERLSSFLLEN---EFVRGKVDTTLFCKTYKDDILIVQIYVDDII 1287
LKKSLYGLKQ+ WYE + S+L++ E VRG + +++ + + ++VDD++
Sbjct: 950 LKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRG------WSCVFENSQVTICLFVDDMV 1003
Query: 1288 FGSANQSLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPEGTYIHQSKYTKELLKKFNM 1347
S N + K + ++ +++ ++ + IQ D + KY K L N
Sbjct: 1004 LFSKNLNSNKRIIDKLKMQYDTKIINLGESDEEIQYDILGLEIKYQRGKYMK--LGMENS 1061
Query: 1348 LESTVAK--TPMHP----------------TCILEKEYKSGKVCQKLYRGMIGSLLYLTA 1389
L + K P++P LE E K+ + +IG Y+
Sbjct: 1062 LTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQELELEEDDYKMKVHEMQKLIGLASYVGY 1121
Query: 1390 S-RPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEY----KLSGY 1444
R D+L+ ++ A+ P + L +++++ T + L++ K+ KL
Sbjct: 1122 KFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRDKQLIWHKSKPVKPTNKLVVI 1181
Query: 1445 CDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEY--ISAAICSTQMLW 1502
DA Y G++ KS GN L ++ S + S ST EAE IS ++ L
Sbjct: 1182 SDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLS 1240
Query: 1503 MKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKHHFIRDYVQKGVLLLKF 1562
Q D + + + +T +I +S N R + K +RD V L + +
Sbjct: 1241 YLIQELDKKPITKGLLTDSKSTISIIISNNE-EKFRNRFFGTKAMRLRDEVSGNHLHVCY 1299
Query: 1563 VDTDHQWADIFTKPLAEDRFNFI 1585
++T AD+ TKPL F +
Sbjct: 1300 IETKKNIADVMTKPLPIKTFKLL 1322
Score = 97.4 bits (241), Expect = 3e-19
Identities = 103/438 (23%), Positives = 176/438 (39%), Gaps = 27/438 (6%)
Query: 579 LDSGCSRHMTGEKRMFRELKLKPGGEVGFGGNEKGKIVGTGTICV---DSSPCIDNVLLV 635
LDSG SR + P V I G + D++ VL
Sbjct: 33 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 92
Query: 636 DGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELEAQNV 695
+ ++LLS+++LA F + + + DG+VL + + Y + L N+
Sbjct: 93 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLLPSNI 149
Query: 696 KCLL------SVDEEQWVW---HRRLGHASMRKISQLSKLNLVRGLP----NLKFASDAL 742
S ++ + HR L HA+ + I K N + + A D
Sbjct: 150 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQ 209
Query: 743 CEACQKGKFTK---VPFKAKNVVSTSRPLELLHIDLFGPVKIESIGGKRYGMVIVDDYSR 799
C C GK TK + ++ P + LH D+FGPV Y + D+ ++
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 269
Query: 800 WTWVKFLTRKDESHV--VFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIA 857
+ WV L + E + VF+T +A ++N+ ++ ++ D G E+ N + GI
Sbjct: 270 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 329
Query: 858 HDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRISVRPIL 917
++ + +GV ER NRTL + RT LQ +G+ H W A+ + ++N ++ P
Sbjct: 330 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLA-SPKS 388
Query: 918 NKTPYELWKNIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSERSKGFRFYN 977
K+ + +IS PFG ++N + K + L S S G+ Y
Sbjct: 389 KKSARQHAGLAGLDISTLLPFG-QPVIVNDHNPNSKIHPRGIPGYALHPSRNSYGYIIYL 447
Query: 978 TD-AKTIEESIHVRFDDK 994
KT++ + +V K
Sbjct: 448 PSLKKTVDTTNYVILQGK 465
>M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820
(ORF170)
Length = 170
Score = 97.4 bits (241), Expect = 3e-19
Identities = 46/97 (47%), Positives = 66/97 (67%)
Query: 1088 EPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPESVLVIGTKWVFRNKLNEKGDVV 1147
EPKS+ AL+D W AM+EEL+ S+N W LV P + ++G KWVF+ KL+ G +
Sbjct: 27 EPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLD 86
Query: 1148 RNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLIS 1184
R KARLVA+G+ Q+EGI + ET++PV R IR +++
Sbjct: 87 RLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILN 123
>M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240
(ORF111a)
Length = 111
Score = 69.3 bits (168), Expect = 8e-11
Identities = 31/82 (37%), Positives = 50/82 (60%)
Query: 1385 LYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYKLSGY 1444
+YLT +RPD+ F+V+ ++F S R + AV ++L Y+KGT GL Y TS+ +L +
Sbjct: 1 MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60
Query: 1445 CDADYAGDRTERKSTSGNCQFL 1466
D+D+A R+S +G C +
Sbjct: 61 ADSDWASCPDTRRSVTGFCSLV 82
>POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1189
Score = 63.2 bits (152), Expect = 6e-09
Identities = 69/276 (25%), Positives = 117/276 (42%), Gaps = 19/276 (6%)
Query: 658 NQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELEAQNVKCLLSVDEEQWVWHRRLGHASM 717
+Q+ RA+ + N +++ KI L + EA L++ ++ W LG+ +
Sbjct: 806 DQEEARAIGATENKDTRNWEKEG---KIVLPQKEA------LAMIQQMHAW-THLGNRKL 855
Query: 718 RKISQLSKLNLVRGLPNLKFASDALCEACQKGKFTKVPFKAKNVVSTSRPLELLHIDLFG 777
+ + + + + R ++ + A C+ CQ+ A +RP ID F
Sbjct: 856 KLLIEKTDFLIPRASTLIEQVTSA-CKVCQQVNAGATRVPAGKRTRGNRPGVYWEID-FT 913
Query: 778 PVKIESIGGKRYGMVIVDDYSRWTWVKFLTRKDESHVVFSTFIAQVQNEKACRIVRVRSD 837
VK G +Y +V VD +S W F TR++ +H+V + ++ V + SD
Sbjct: 914 EVK-PHYAGYKYLLVFVDTFSGWVEA-FPTRQETAHIVAKKILEEIFPRFGLPKV-IGSD 970
Query: 838 HGGEFENDKFESLFDSYGIAHDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFW 897
+G F + + L GI C PQ +G VER NRT++E + ETG+ W
Sbjct: 971 NGPAFVSQVSQGLARILGINWKLHCAYRPQSSGQVERMNRTIKETLTKLTLETGLKD--W 1028
Query: 898 AEAVNTACYIQNRISVRPILNKTPYELWKNIKPNIS 933
++ A R TPYE+ P +S
Sbjct: 1029 RRLLSLALLRARNTPNR--FGLTPYEILYGGPPPLS 1062
>POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1196
Score = 59.7 bits (143), Expect = 6e-08
Identities = 64/231 (27%), Positives = 99/231 (42%), Gaps = 14/231 (6%)
Query: 711 RLGHASMRKISQL-----SKLNLVRGLPNLKFASDALCEACQKGKFTKVPFKAKNVVSTS 765
RL H +K+ L S ++ L++ +D+ C C + +K A V
Sbjct: 849 RLTHLGYQKMKALLDRGESPYYMLNRDKTLQYVADS-CTVCAQVNASKAKIGAGVRVRGH 907
Query: 766 RPLELLHIDLFGPVKIESIGGKRYGMVIVDDYSRWTWVKFLTRKDESHVVFSTFIAQVQN 825
RP ID F VK + G +Y +V VD +S W F T+++ + VV + ++
Sbjct: 908 RPGSHWEID-FTEVK-PGLYGYKYLLVFVDTFSGWVEA-FPTKRETARVVSKKLLEEIFP 964
Query: 826 EKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTPQQNGVVERKNRTLQEMART 885
V + SD+G F + +S+ D GI C PQ +G VER NRT++E
Sbjct: 965 RFGMPQV-LGSDNGPAFTSQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTK 1023
Query: 886 MLQETGMAKHFWAEAVNTACYIQNRISVRPILNKTPYELWKNIKPNISYFH 936
+ G W + A Y + R + P TPYE+ P + FH
Sbjct: 1024 LTLAAGTRD--WVLLLPLALY-RARNTPGP-HGLTPYEILYGAPPPLVNFH 1070
>M710_ARATH (P92512) Hypothetical mitochondrial protein AtMg00710
(ORF120)
Length = 120
Score = 57.8 bits (138), Expect = 2e-07
Identities = 30/69 (43%), Positives = 38/69 (54%)
Query: 876 NRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRISVRPILNKTPYELWKNIKPNISYF 935
NRT+ E R+ML E G+ K F A+A NTA +I N+ I P E+W P SY
Sbjct: 2 NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61
Query: 936 HPFGCVCYV 944
FGCV Y+
Sbjct: 62 RRFGCVAYI 70
>POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 1046
Score = 57.4 bits (137), Expect = 3e-07
Identities = 55/193 (28%), Positives = 85/193 (43%), Gaps = 12/193 (6%)
Query: 743 CEACQK--GKFTKVPFKAKNVVSTSRPLELLHIDLFGPVKIESIGGKRYGMVIVDDYSRW 800
C+ CQ+ T+VP + +RP ID F VK G +Y +V VD +S W
Sbjct: 737 CKVCQQVNAGATRVPEGKRT--RGNRPGVYWEID-FTEVK-PHYAGYKYLLVFVDTFSGW 792
Query: 801 TWVKFLTRKDESHVVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDF 860
+ TR++ +H+V + ++ V + SD+G F + + L + GI
Sbjct: 793 VEA-YPTRQETAHMVAKKILEEIFPRFGLPKV-IGSDNGPAFVSQVSQGLARTLGINWKL 850
Query: 861 SCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRISVRPILNKT 920
C PQ +G VER NRT++E + ETG+ W ++ A R T
Sbjct: 851 HCAYRPQSSGQVERMNRTIKETLTKLTLETGLKD--WRRLLSLALLRARNTPNR--FGLT 906
Query: 921 PYELWKNIKPNIS 933
PYE+ P +S
Sbjct: 907 PYEILYGGPPPLS 919
>POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1199
Score = 56.2 bits (134), Expect = 7e-07
Identities = 64/233 (27%), Positives = 99/233 (42%), Gaps = 20/233 (8%)
Query: 711 RLGHASMRKISQLSK--------LNLVRGLPNLKFASDALCEACQKGKFTKVPFKAKNVV 762
+L H S K+ L + LN R L N+ C+AC + +K K V
Sbjct: 849 QLTHLSFSKMKALLERSHSPYYMLNRDRTLKNIT----ETCKACAQVNASKSAVKQGTRV 904
Query: 763 STSRPLELLHIDLFGPVKIESIGGKRYGMVIVDDYSRWTWVKFLTRKDESHVVFSTFIAQ 822
RP ID F +K + G +Y +V +D +S W F T+K+ + VV + +
Sbjct: 905 RGHRPGTHWEID-FTEIK-PGLYGYKYLLVFIDTFSGWIEA-FPTKKETAKVVTKKLLEE 961
Query: 823 VQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTPQQNGVVERKNRTLQEM 882
+ V + +D+G F + +++ D GI C PQ +G VER NRT++E
Sbjct: 962 IFPRFGMPQV-LGTDNGPAFVSKVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKET 1020
Query: 883 ARTMLQETGMAKHFWAEAVNTACYIQNRISVRPILNKTPYELWKNIKPNISYF 935
+ TG W + A Y + R + P TPYE+ P + F
Sbjct: 1021 LTKLTLATG--SRDWVLLLPLALY-RARNTPGP-HGLTPYEILYGAPPPLVNF 1069
>POL_MLVAK (P03357) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 843
Score = 56.2 bits (134), Expect = 7e-07
Identities = 64/231 (27%), Positives = 99/231 (42%), Gaps = 15/231 (6%)
Query: 711 RLGHASMRKISQL-----SKLNLVRGLPNLKFASDALCEACQKGKFTKVPFKAKNVVSTS 765
RL H +K+ L S ++ L++ +D+ C C + +K A V
Sbjct: 497 RLTHLGYQKMKALLDRGESPYYMLNRDKTLQYVADS-CTVCAQVNASKAKIGAGVRVRGH 555
Query: 766 RPLELLHIDLFGPVKIESIGGKRYGMVIVDDYSRWTWVKFLTRKDESHVVFSTFIAQVQN 825
RP ID F VK + G +Y +V VD +S W F T+++ + VV + ++
Sbjct: 556 RPGSHWEID-FTEVK-PGLYGYKYLLVFVDTFSGWVEA-FPTKRETARVVSKKLLEEIFP 612
Query: 826 EKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTPQQNGVVERKNRTLQEMART 885
V + SD+G F + +S+ D GI C PQ +G VER NRT++E
Sbjct: 613 RFGMPQV-LGSDNGPAFTSQVSQSVADLLGI-DKLHCAYRPQSSGQVERMNRTIKETLTK 670
Query: 886 MLQETGMAKHFWAEAVNTACYIQNRISVRPILNKTPYELWKNIKPNISYFH 936
+ G W + A Y + R + P TPYE+ P + FH
Sbjct: 671 LTLAAGTRD--WVLLLPLALY-RARNTPGP-HGLTPYEILYGAPPPLVNFH 717
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.332 0.142 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 167,681,700
Number of Sequences: 164201
Number of extensions: 6733389
Number of successful extensions: 29256
Number of sequences better than 10.0: 126
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 28942
Number of HSP's gapped (non-prelim): 241
length of query: 1596
length of database: 59,974,054
effective HSP length: 124
effective length of query: 1472
effective length of database: 39,613,130
effective search space: 58310527360
effective search space used: 58310527360
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 73 (32.7 bits)
Lotus: description of TM0128.9